assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	2	591006-591130	1	CRISPRCasFinder	no	WYL	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Unclear	TGATGGTTGATAAGAATAGTAAGAAAAAAATAGATAATTAAAG	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|204aa|up_4|CP012312.1_585708_586320_+,NA|219aa|down_0|CP012312.1_591341_591998_+	NA|147aa|up_9|CP012312.1_581677_582118_+	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|268aa|up_8|CP012312.1_582153_582957_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|199aa|up_7|CP012312.1_582996_583593_+	cd16432, CheB_Rec, Chemotaxis response regulator protein-glutamate methylesterase, CheB, with N-terminal REC domain	NA|288aa|up_6|CP012312.1_583698_584562_+	pfam13739, DUF4163, Domain of unknown function (DUF4163)	NA|330aa|up_5|CP012312.1_584628_585618_+	PRK08618, PRK08618, ornithine cyclodeaminase family protein	NA|204aa|up_4|CP012312.1_585708_586320_+	NA	NA|260aa|up_3|CP012312.1_586766_587546_+	pfam06161, DUF975, Protein of unknown function (DUF975)	NA|120aa|up_2|CP012312.1_587750_588110_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|461aa|up_1|CP012312.1_588120_589503_+	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|137aa|up_0|CP012312.1_589718_590129_+	pfam02181, FH2, Formin Homology 2 Domain	NA|219aa|down_0|CP012312.1_591341_591998_+	NA	NA|424aa|down_1|CP012312.1_592468_593740_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|239aa|down_2|CP012312.1_593984_594701_+	pfam13367, PrsW-protease, Protease prsW family	NA|437aa|down_3|CP012312.1_594779_596090_+	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|179aa|down_4|CP012312.1_596189_596726_+	TIGR02227, Inactive_signal_peptidase_IA	NA|179aa|down_5|CP012312.1_596891_597428_+	TIGR02227, Inactive_signal_peptidase_IA	NA|252aa|down_6|CP012312.1_597437_598193_+	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|556aa|down_7|CP012312.1_598266_599934_+	cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2	NA|310aa|down_8|CP012312.1_600697_601627_+	TIGR03814, Glutaminase_1, glutaminase A	NA|188aa|down_9|CP012312.1_601724_602288_+	pfam12840, HTH_20, Helix-turn-helix domain
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	3	1145996-1146088	2	CRISPRCasFinder	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTGGCGCTGTGCGTTAGCACTTTAAGCAAC	31	1	5	1146027-1146057|1146027-1146057|1146027-1146057|1146027-1146057|1146027-1146057	CP012312.1_12391-12421|CP012312.1_32077-32107|CP012312.1_3111576-3111546|CP012312.1_3901670-3901640|CP012312.1_4042232-4042202	NA	1	1	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA,NA|638aa|down_2|CP012312.1_1154473_1156387_+	NA|279aa|up_9|CP012312.1_1131775_1132612_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|243aa|up_8|CP012312.1_1132662_1133391_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|351aa|up_7|CP012312.1_1133390_1134443_+	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|283aa|up_6|CP012312.1_1134904_1135753_+	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]	NA|555aa|up_5|CP012312.1_1135742_1137407_+	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria	NA|419aa|up_4|CP012312.1_1137455_1138712_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|694aa|up_3|CP012312.1_1138734_1140816_+	pfam03170, BcsB, Bacterial cellulose synthase subunit	NA|358aa|up_2|CP012312.1_1140864_1141938_+	cd19608, GH113_mannanase-like, Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins	NA|375aa|up_1|CP012312.1_1141991_1143116_+	TIGR00236, UDP-N-acetylglucosamine_2-epimerase, UDP-N-acetylglucosamine 2-epimerase	NA|325aa|up_0|CP012312.1_1143191_1144166_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|673aa|down_0|CP012312.1_1149696_1151715_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|671aa|down_1|CP012312.1_1152219_1154232_+	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase	NA|638aa|down_2|CP012312.1_1154473_1156387_+	NA	NA|740aa|down_3|CP012312.1_1156379_1158599_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|277aa|down_4|CP012312.1_1158707_1159538_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|1156aa|down_5|CP012312.1_1159527_1162995_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1276aa|down_6|CP012312.1_1162994_1166822_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|404aa|down_7|CP012312.1_1166866_1168078_+	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD	NA|1176aa|down_8|CP012312.1_1168064_1171592_+	TIGR00618, Nuclease_SbcCD_subunit_C, exonuclease SbcC	NA|418aa|down_9|CP012312.1_1171722_1172976_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	4	1342529-1342953	1,3,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,6	6	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA,NA|84aa|down_1|CP012312.1_1344565_1344817_+,NA|38aa|down_2|CP012312.1_1345133_1345247_+,NA|65aa|down_3|CP012312.1_1345470_1345665_+,NA|128aa|down_4|CP012312.1_1346033_1346417_-,NA|115aa|down_5|CP012312.1_1346543_1346888_+,NA|99aa|down_6|CP012312.1_1348293_1348590_-,NA|92aa|down_7|CP012312.1_1348915_1349191_-	NA|271aa|up_9|CP012312.1_1329623_1330436_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|442aa|up_8|CP012312.1_1330639_1331965_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|CP012312.1_1332177_1333257_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|CP012312.1_1333428_1334103_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|CP012312.1_1334089_1335337_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_4|CP012312.1_1335408_1337073_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_3|CP012312.1_1337169_1337454_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_2|CP012312.1_1337476_1338994_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_1|CP012312.1_1339118_1339940_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_0|CP012312.1_1340130_1341558_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|47aa|down_0|CP012312.1_1343322_1343463_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|down_1|CP012312.1_1344565_1344817_+	NA	NA|38aa|down_2|CP012312.1_1345133_1345247_+	NA	NA|65aa|down_3|CP012312.1_1345470_1345665_+	NA	NA|128aa|down_4|CP012312.1_1346033_1346417_-	NA	NA|115aa|down_5|CP012312.1_1346543_1346888_+	NA	NA|99aa|down_6|CP012312.1_1348293_1348590_-	NA	NA|92aa|down_7|CP012312.1_1348915_1349191_-	NA	NA|130aa|down_8|CP012312.1_1349626_1350016_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_9|CP012312.1_1350339_1350849_+	pfam04892, VanZ, VanZ like family
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	5	1555280-1555637	4,3,2	CRISPRCasFinder,CRT,PILER-CR	no	DinG	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	5,5,3	5	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|183aa|up_5|CP012312.1_1550240_1550789_-,NA|80aa|down_4|CP012312.1_1562788_1563028_+,NA|59aa|down_5|CP012312.1_1563214_1563391_-	NA|195aa|up_9|CP012312.1_1545428_1546013_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|481aa|up_8|CP012312.1_1546212_1547655_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_7|CP012312.1_1547970_1548915_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_6|CP012312.1_1549185_1550121_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_5|CP012312.1_1550240_1550789_-	NA	NA|143aa|up_4|CP012312.1_1550940_1551369_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|217aa|up_3|CP012312.1_1551453_1552104_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_2|CP012312.1_1552221_1553577_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|187aa|up_1|CP012312.1_1554117_1554678_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|119aa|up_0|CP012312.1_1554707_1555064_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|578aa|down_0|CP012312.1_1555962_1557696_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|CP012312.1_1557932_1558778_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|CP012312.1_1558808_1561043_-	cd01948, EAL, EAL domain	NA|270aa|down_3|CP012312.1_1561826_1562636_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|CP012312.1_1562788_1563028_+	NA	NA|59aa|down_5|CP012312.1_1563214_1563391_-	NA	NA|225aa|down_6|CP012312.1_1563882_1564557_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|45aa|down_7|CP012312.1_1565133_1565268_+	TIGR00232, Transketolase_2, transketolase, bacterial and yeast	NA|262aa|down_8|CP012312.1_1565367_1566153_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|275aa|down_9|CP012312.1_1566248_1567073_-	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	6	1663959-1664251	3,5,4	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	3,4,4	4	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|190aa|up_7|CP012312.1_1654115_1654685_+,NA|61aa|up_4|CP012312.1_1657368_1657551_-,NA|52aa|down_0|CP012312.1_1664547_1664703_-,NA|323aa|down_5|CP012312.1_1669174_1670143_+	NA|195aa|up_9|CP012312.1_1652474_1653059_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|300aa|up_8|CP012312.1_1653211_1654111_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|CP012312.1_1654115_1654685_+	NA	NA|216aa|up_6|CP012312.1_1654851_1655499_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|CP012312.1_1655888_1656803_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|CP012312.1_1657368_1657551_-	NA	NA|283aa|up_3|CP012312.1_1657961_1658810_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|CP012312.1_1658828_1659656_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|299aa|up_1|CP012312.1_1659630_1660527_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|CP012312.1_1661206_1663300_+	cd01948, EAL, EAL domain	NA|52aa|down_0|CP012312.1_1664547_1664703_-	NA	NA|273aa|down_1|CP012312.1_1664910_1665729_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|CP012312.1_1665861_1667982_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|CP012312.1_1668007_1668235_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|CP012312.1_1668561_1669002_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_5|CP012312.1_1669174_1670143_+	NA	NA|403aa|down_6|CP012312.1_1670619_1671828_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|CP012312.1_1671888_1672770_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_8|CP012312.1_1673185_1674100_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|CP012312.1_1674322_1674868_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	7	1753757-1753987	4,6,5	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTTTAGATTAACTATATGGAATGTAAATTT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAATTT	31,29,31	0	0	NA	NA	NA:I-A:NA	2,3,3	3	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|134aa|up_8|CP012312.1_1748442_1748844_+,NA|116aa|up_7|CP012312.1_1748837_1749185_+,NA|146aa|up_5|CP012312.1_1749602_1750040_+,NA|62aa|up_4|CP012312.1_1750023_1750209_+,NA|35aa|up_0|CP012312.1_1753361_1753466_+,NA|294aa|down_0|CP012312.1_1755136_1756018_+	NA|78aa|up_9|CP012312.1_1748199_1748433_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_8|CP012312.1_1748442_1748844_+	NA	NA|116aa|up_7|CP012312.1_1748837_1749185_+	NA	NA|142aa|up_6|CP012312.1_1749184_1749610_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_5|CP012312.1_1749602_1750040_+	NA	NA|62aa|up_4|CP012312.1_1750023_1750209_+	NA	NA|437aa|up_3|CP012312.1_1750209_1751520_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_2|CP012312.1_1751536_1752007_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_1|CP012312.1_1752078_1752519_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|35aa|up_0|CP012312.1_1753361_1753466_+	NA	NA|294aa|down_0|CP012312.1_1755136_1756018_+	NA	NA|763aa|down_1|CP012312.1_1756088_1758377_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|231aa|down_2|CP012312.1_1758392_1759085_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_3|CP012312.1_1759077_1760970_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_4|CP012312.1_1760983_1761244_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_5|CP012312.1_1761248_1761668_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_6|CP012312.1_1761668_1762718_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_7|CP012312.1_1762710_1763328_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|342aa|down_8|CP012312.1_1763339_1764365_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|563aa|down_9|CP012312.1_1764381_1766070_+	pfam12810, Gly_rich, Glycine rich protein
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	8	1754588-1755009	5,7,6	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	5,6,6	6	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|134aa|up_8|CP012312.1_1748442_1748844_+,NA|116aa|up_7|CP012312.1_1748837_1749185_+,NA|146aa|up_5|CP012312.1_1749602_1750040_+,NA|62aa|up_4|CP012312.1_1750023_1750209_+,NA|35aa|up_0|CP012312.1_1753361_1753466_+,NA|294aa|down_0|CP012312.1_1755136_1756018_+	NA|78aa|up_9|CP012312.1_1748199_1748433_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_8|CP012312.1_1748442_1748844_+	NA	NA|116aa|up_7|CP012312.1_1748837_1749185_+	NA	NA|142aa|up_6|CP012312.1_1749184_1749610_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_5|CP012312.1_1749602_1750040_+	NA	NA|62aa|up_4|CP012312.1_1750023_1750209_+	NA	NA|437aa|up_3|CP012312.1_1750209_1751520_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_2|CP012312.1_1751536_1752007_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_1|CP012312.1_1752078_1752519_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|35aa|up_0|CP012312.1_1753361_1753466_+	NA	NA|294aa|down_0|CP012312.1_1755136_1756018_+	NA	NA|763aa|down_1|CP012312.1_1756088_1758377_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|231aa|down_2|CP012312.1_1758392_1759085_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_3|CP012312.1_1759077_1760970_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_4|CP012312.1_1760983_1761244_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_5|CP012312.1_1761248_1761668_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_6|CP012312.1_1761668_1762718_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_7|CP012312.1_1762710_1763328_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|342aa|down_8|CP012312.1_1763339_1764365_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|563aa|down_9|CP012312.1_1764381_1766070_+	pfam12810, Gly_rich, Glycine rich protein
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	9	1887293-1887586	6,8,7	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTTTATATTAACTATGTGGTATGTAAATTTT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAATTT	32,29,31	0	0	NA	NA	I-A:I-A:I-A	3,4,4	4	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA,NA|96aa|down_0|CP012312.1_1887990_1888278_+,NA|33aa|down_1|CP012312.1_1888302_1888401_+,NA|59aa|down_6|CP012312.1_1894664_1894841_-,NA|341aa|down_7|CP012312.1_1895408_1896431_+,NA|258aa|down_9|CP012312.1_1897337_1898111_+	NA|200aa|up_9|CP012312.1_1870534_1871134_-	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only]	NA|266aa|up_8|CP012312.1_1871236_1872034_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_7|CP012312.1_1872343_1873330_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_6|CP012312.1_1873812_1875543_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_5|CP012312.1_1876067_1876583_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_4|CP012312.1_1877372_1879847_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_3|CP012312.1_1879846_1881304_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_2|CP012312.1_1881726_1884084_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_1|CP012312.1_1884169_1884487_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|424aa|up_0|CP012312.1_1885376_1886648_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|CP012312.1_1887990_1888278_+	NA	NA|33aa|down_1|CP012312.1_1888302_1888401_+	NA	NA|184aa|down_2|CP012312.1_1888816_1889368_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_3|CP012312.1_1889558_1890521_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_4|CP012312.1_1890813_1892658_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_5|CP012312.1_1892978_1893563_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_6|CP012312.1_1894664_1894841_-	NA	NA|341aa|down_7|CP012312.1_1895408_1896431_+	NA	NA|296aa|down_8|CP012312.1_1896444_1897332_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_9|CP012312.1_1897337_1898111_+	NA
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	10	2579514-2580142	9,8,7	CRISPRCasFinder,CRT,PILER-CR	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCANATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	9,9,6	9	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|50aa|up_2|CP012312.1_2578025_2578175_-,NA|81aa|up_0|CP012312.1_2579113_2579356_-,NA|53aa|down_0|CP012312.1_2580217_2580376_-,NA|54aa|down_3|CP012312.1_2582751_2582913_-,NA|78aa|down_5|CP012312.1_2583960_2584194_-,NA|53aa|down_6|CP012312.1_2584597_2584756_-,NA|86aa|down_8|CP012312.1_2585523_2585781_-	NA|350aa|up_9|CP012312.1_2570296_2571346_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|140aa|up_8|CP012312.1_2571346_2571766_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|87aa|up_7|CP012312.1_2571770_2572031_-	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|656aa|up_6|CP012312.1_2572044_2574012_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|234aa|up_5|CP012312.1_2574004_2574706_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|784aa|up_4|CP012312.1_2574717_2577069_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|257aa|up_3|CP012312.1_2577125_2577896_-	pfam09851, SHOCT, Short C-terminal domain	NA|50aa|up_2|CP012312.1_2578025_2578175_-	NA	NA|273aa|up_1|CP012312.1_2578174_2578993_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|81aa|up_0|CP012312.1_2579113_2579356_-	NA	NA|53aa|down_0|CP012312.1_2580217_2580376_-	NA	NA|260aa|down_1|CP012312.1_2580408_2581188_-	pfam10543, ORF6N, ORF6N domain	NA|68aa|down_2|CP012312.1_2581431_2581635_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|54aa|down_3|CP012312.1_2582751_2582913_-	NA	NA|289aa|down_4|CP012312.1_2582972_2583839_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|78aa|down_5|CP012312.1_2583960_2584194_-	NA	NA|53aa|down_6|CP012312.1_2584597_2584756_-	NA	NA|147aa|down_7|CP012312.1_2585078_2585519_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|86aa|down_8|CP012312.1_2585523_2585781_-	NA	NA|159aa|down_9|CP012312.1_2585833_2586310_-	pfam09393, DUF2001, Phage tail tube protein
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	11	2581680-2582508	10,9,8	CRISPRCasFinder,CRT,PILER-CR	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,TTTACATNCCANATAGTTAATNTAAAAC,GTTTTATATTAACTATGTGGTATGTAAA	29,28,28	0	0	NA	NA	I-A:NA:I-A	12,12,11	12	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|50aa|up_5|CP012312.1_2578025_2578175_-,NA|81aa|up_3|CP012312.1_2579113_2579356_-,NA|53aa|up_2|CP012312.1_2580217_2580376_-,NA|54aa|down_0|CP012312.1_2582751_2582913_-,NA|78aa|down_2|CP012312.1_2583960_2584194_-,NA|53aa|down_3|CP012312.1_2584597_2584756_-,NA|86aa|down_5|CP012312.1_2585523_2585781_-,NA|62aa|down_8|CP012312.1_2587640_2587826_-,NA|146aa|down_9|CP012312.1_2587809_2588247_-	NA|656aa|up_9|CP012312.1_2572044_2574012_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|234aa|up_8|CP012312.1_2574004_2574706_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|784aa|up_7|CP012312.1_2574717_2577069_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|257aa|up_6|CP012312.1_2577125_2577896_-	pfam09851, SHOCT, Short C-terminal domain	NA|50aa|up_5|CP012312.1_2578025_2578175_-	NA	NA|273aa|up_4|CP012312.1_2578174_2578993_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|81aa|up_3|CP012312.1_2579113_2579356_-	NA	NA|53aa|up_2|CP012312.1_2580217_2580376_-	NA	NA|260aa|up_1|CP012312.1_2580408_2581188_-	pfam10543, ORF6N, ORF6N domain	NA|68aa|up_0|CP012312.1_2581431_2581635_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|54aa|down_0|CP012312.1_2582751_2582913_-	NA	NA|289aa|down_1|CP012312.1_2582972_2583839_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|78aa|down_2|CP012312.1_2583960_2584194_-	NA	NA|53aa|down_3|CP012312.1_2584597_2584756_-	NA	NA|147aa|down_4|CP012312.1_2585078_2585519_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|86aa|down_5|CP012312.1_2585523_2585781_-	NA	NA|159aa|down_6|CP012312.1_2585833_2586310_-	pfam09393, DUF2001, Phage tail tube protein	NA|437aa|down_7|CP012312.1_2586329_2587640_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|62aa|down_8|CP012312.1_2587640_2587826_-	NA	NA|146aa|down_9|CP012312.1_2587809_2588247_-	NA
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	12	2779285-2779442	9	PILER-CR	no	cas3,cas5,cas7,cas6	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Unclear	AGGTTTAAGATTAACTAAGTGG-------ATTTCA	35	0	0	NA	NA	NA	2	2	Unclear	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA,NA|492aa|down_3|CP012312.1_2783869_2785345_-,NA|59aa|down_5|CP012312.1_2786187_2786364_-	NA|448aa|up_9|CP012312.1_2771740_2773084_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|CP012312.1_2773096_2773333_-	pfam07873, YabP, YabP family	NA|188aa|up_7|CP012312.1_2773547_2774111_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|CP012312.1_2774302_2774800_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|CP012312.1_2774910_2775354_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|CP012312.1_2775383_2775563_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|CP012312.1_2775725_2776076_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|CP012312.1_2776118_2777417_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|CP012312.1_2777418_2778177_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|CP012312.1_2778195_2779143_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|CP012312.1_2779583_2781992_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|266aa|down_1|CP012312.1_2782018_2782816_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|340aa|down_2|CP012312.1_2782831_2783851_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|CP012312.1_2783869_2785345_-	NA	cas6|246aa|down_4|CP012312.1_2785349_2786087_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|59aa|down_5|CP012312.1_2786187_2786364_-	NA	NA|370aa|down_6|CP012312.1_2786817_2787927_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_7|CP012312.1_2787956_2788724_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|458aa|down_8|CP012312.1_2788911_2790285_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_9|CP012312.1_2790320_2791256_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	13	2867718-2868007	10,10,11	CRT,PILER-CR,CRISPRCasFinder	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	ANTCCATATAGTNTAATATAAAAC,GTTTTATATTAACTATATGGAATGTAAATTCTT,ATTTACATTCCATATAGTTAATATAAAAC	24,33,29	1	1	2867741-2867785	CP012312.1_1754024-1753980	NA:I-A:I-A	4,3,3	4	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|59aa|up_6|CP012312.1_2863171_2863348_+,NA|53aa|down_0|CP012312.1_2868292_2868451_-	NA|543aa|up_9|CP012312.1_2859480_2861109_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_8|CP012312.1_2861229_2862225_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|128aa|up_7|CP012312.1_2862408_2862792_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|59aa|up_6|CP012312.1_2863171_2863348_+	NA	NA|67aa|up_5|CP012312.1_2863573_2863774_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|441aa|up_4|CP012312.1_2864219_2865542_+	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|194aa|up_3|CP012312.1_2865584_2866166_+	pfam04647, AgrB, Accessory gene regulator B	NA|54aa|up_2|CP012312.1_2866183_2866345_+	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|266aa|up_1|CP012312.1_2866366_2867164_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|87aa|up_0|CP012312.1_2867160_2867421_-	pfam16079, Phage_holin_5_2, Phage holin family Hol44, in holin superfamily V	NA|53aa|down_0|CP012312.1_2868292_2868451_-	NA	NA|457aa|down_1|CP012312.1_2868808_2870179_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|141aa|down_2|CP012312.1_2870577_2871000_+	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain	NA|230aa|down_3|CP012312.1_2871270_2871960_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_4|CP012312.1_2872841_2875262_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_5|CP012312.1_2875615_2875966_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_6|CP012312.1_2876082_2876655_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_7|CP012312.1_2876655_2877345_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_8|CP012312.1_2877620_2878259_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_9|CP012312.1_2878411_2880415_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme
GCA_003482225.1_ASM348222v1	CP012312	Clostridioides difficile strain DSM 28670 chromosome, complete genome	19	3722266-3722469	17	CRISPRCasFinder	no		csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	TCATCATATAAACCTATTAAATATTATCTTATTTATTGGTATATGGAAT	49	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,c2c9_V-U4,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA,NA|46aa|down_4|CP012312.1_3728788_3728926_-	NA|82aa|up_9|CP012312.1_3711221_3711467_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|373aa|up_8|CP012312.1_3711597_3712716_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|398aa|up_7|CP012312.1_3712921_3714115_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|up_6|CP012312.1_3714437_3715319_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|334aa|up_5|CP012312.1_3715748_3716750_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|296aa|up_4|CP012312.1_3716866_3717754_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|250aa|up_3|CP012312.1_3717820_3718570_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|239aa|up_2|CP012312.1_3718788_3719505_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|330aa|up_1|CP012312.1_3719967_3720957_-	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|252aa|up_0|CP012312.1_3721396_3722152_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|556aa|down_0|CP012312.1_3722584_3724252_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|180aa|down_1|CP012312.1_3724430_3724970_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|436aa|down_2|CP012312.1_3725297_3726605_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|589aa|down_3|CP012312.1_3727016_3728783_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|46aa|down_4|CP012312.1_3728788_3728926_-	NA	NA|190aa|down_5|CP012312.1_3729003_3729573_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|212aa|down_6|CP012312.1_3729756_3730392_-	PRK05813, PRK05813, single-stranded DNA-binding protein; Provisional	NA|294aa|down_7|CP012312.1_3731059_3731941_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|336aa|down_8|CP012312.1_3732060_3733068_-	PRK13969, PRK13969, proline racemase; Provisional	NA|158aa|down_9|CP012312.1_3733087_3733561_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein
