assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	1	32087-32179	1	CRISPRCasFinder	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTGGCGCTGTGCGTTAGCACTTTAAGCAAC	31	1	2	32118-32148|32118-32148	CP016102.1_17782-17812|CP016102.1_1158894-1158924	NA	1	1	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|74aa|up_1|CP016102.1_28502_28724_+,NA|138aa|down_0|CP016102.1_39447_39861_+,NA|32aa|down_1|CP016102.1_39870_39966_+	NA|258aa|up_9|CP016102.1_9856_10630_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|170aa|up_8|CP016102.1_21323_21833_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|294aa|up_7|CP016102.1_21844_22726_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|424aa|up_6|CP016102.1_23184_24456_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|152aa|up_5|CP016102.1_24776_25232_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|546aa|up_4|CP016102.1_25702_27340_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|117aa|up_3|CP016102.1_27398_27749_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|200aa|up_2|CP016102.1_27761_28361_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|74aa|up_1|CP016102.1_28502_28724_+	NA	NA|402aa|up_0|CP016102.1_28794_30000_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|138aa|down_0|CP016102.1_39447_39861_+	NA	NA|32aa|down_1|CP016102.1_39870_39966_+	NA	NA|1144aa|down_2|CP016102.1_40169_43601_+	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|643aa|down_3|CP016102.1_43842_45771_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|158aa|down_4|CP016102.1_46218_46692_+	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|165aa|down_5|CP016102.1_46698_47193_+	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|342aa|down_6|CP016102.1_47208_48234_+	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|816aa|down_7|CP016102.1_48220_50668_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|458aa|down_8|CP016102.1_50847_52221_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|357aa|down_9|CP016102.1_52223_53294_+	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	2	629101-629225	2	CRISPRCasFinder	no	WYL	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Unclear	TGATGGTTGATAAGAATAGTAAGAAAAAAATAGATAATTAAAG	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|204aa|up_4|CP016102.1_623803_624415_+,NA|219aa|down_0|CP016102.1_629436_630093_+	NA|147aa|up_9|CP016102.1_619772_620213_+	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|268aa|up_8|CP016102.1_620248_621052_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|199aa|up_7|CP016102.1_621091_621688_+	cd16432, CheB_Rec, Chemotaxis response regulator protein-glutamate methylesterase, CheB, with N-terminal REC domain	NA|288aa|up_6|CP016102.1_621793_622657_+	pfam13739, DUF4163, Domain of unknown function (DUF4163)	NA|330aa|up_5|CP016102.1_622723_623713_+	PRK08618, PRK08618, ornithine cyclodeaminase family protein	NA|204aa|up_4|CP016102.1_623803_624415_+	NA	NA|260aa|up_3|CP016102.1_624861_625641_+	pfam06161, DUF975, Protein of unknown function (DUF975)	NA|120aa|up_2|CP016102.1_625845_626205_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|461aa|up_1|CP016102.1_626215_627598_+	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|137aa|up_0|CP016102.1_627813_628224_+	pfam02181, FH2, Formin Homology 2 Domain	NA|219aa|down_0|CP016102.1_629436_630093_+	NA	NA|424aa|down_1|CP016102.1_630563_631835_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|239aa|down_2|CP016102.1_632079_632796_+	pfam13367, PrsW-protease, Protease prsW family	NA|437aa|down_3|CP016102.1_632874_634185_+	PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed	NA|179aa|down_4|CP016102.1_634284_634821_+	TIGR02227, Inactive_signal_peptidase_IA	NA|179aa|down_5|CP016102.1_634986_635523_+	TIGR02227, Inactive_signal_peptidase_IA	NA|252aa|down_6|CP016102.1_635532_636288_+	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|556aa|down_7|CP016102.1_636361_638029_+	cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2	NA|310aa|down_8|CP016102.1_639048_639978_+	TIGR03814, Glutaminase_1, glutaminase A	NA|188aa|down_9|CP016102.1_640075_640639_+	pfam12840, HTH_20, Helix-turn-helix domain
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	3	798205-798295	3	CRISPRCasFinder	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	ATTGATGGTAAAAAATATTACTTTAAT	27	0	0	NA	NA	?	1	1	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|44aa|up_0|CP016102.1_792028_792160_+,NA|101aa|down_3|CP016102.1_801261_801564_-	NA|615aa|up_9|CP016102.1_773484_775329_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|195aa|up_8|CP016102.1_776095_776680_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|245aa|up_7|CP016102.1_777478_778213_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|419aa|up_6|CP016102.1_779196_780453_+	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	NA|398aa|up_5|CP016102.1_780515_781709_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|127aa|up_4|CP016102.1_781910_782291_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|185aa|up_3|CP016102.1_783309_783864_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|2368aa|up_2|CP016102.1_784194_791298_+	pfam12920, TcdA_TcdB_pore, TcdA/TcdB pore forming domain	NA|167aa|up_1|CP016102.1_791419_791920_+	TIGR01593, Uncharacterized_protein_CPE0383, toxin secretion/phage lysis holin	NA|44aa|up_0|CP016102.1_792028_792160_+	NA	NA|233aa|down_0|CP016102.1_799282_799981_-	pfam12569, NARP1, NMDA receptor-regulated protein 1	NA|82aa|down_1|CP016102.1_800397_800643_+	pfam11731, Cdd1, Pathogenicity locus	NA|90aa|down_2|CP016102.1_800860_801130_-	pfam12675, DUF3795, Protein of unknown function (DUF3795)	NA|101aa|down_3|CP016102.1_801261_801564_-	NA	NA|246aa|down_4|CP016102.1_802042_802780_-	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown]	NA|254aa|down_5|CP016102.1_802791_803553_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|305aa|down_6|CP016102.1_803552_804467_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|236aa|down_7|CP016102.1_804637_805345_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|469aa|down_8|CP016102.1_805389_806796_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|130aa|down_9|CP016102.1_808194_808584_+	pfam03965, Penicillinase_R, Penicillinase repressor
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	4	798421-798634	4	CRISPRCasFinder	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	ATTGATGGTAAAAAATATTACTTTAAT	27	0	0	NA	NA	?	3	3	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|44aa|up_0|CP016102.1_792028_792160_+,NA|101aa|down_3|CP016102.1_801261_801564_-	NA|615aa|up_9|CP016102.1_773484_775329_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|195aa|up_8|CP016102.1_776095_776680_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|245aa|up_7|CP016102.1_777478_778213_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|419aa|up_6|CP016102.1_779196_780453_+	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	NA|398aa|up_5|CP016102.1_780515_781709_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|127aa|up_4|CP016102.1_781910_782291_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|185aa|up_3|CP016102.1_783309_783864_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|2368aa|up_2|CP016102.1_784194_791298_+	pfam12920, TcdA_TcdB_pore, TcdA/TcdB pore forming domain	NA|167aa|up_1|CP016102.1_791419_791920_+	TIGR01593, Uncharacterized_protein_CPE0383, toxin secretion/phage lysis holin	NA|44aa|up_0|CP016102.1_792028_792160_+	NA	NA|233aa|down_0|CP016102.1_799282_799981_-	pfam12569, NARP1, NMDA receptor-regulated protein 1	NA|82aa|down_1|CP016102.1_800397_800643_+	pfam11731, Cdd1, Pathogenicity locus	NA|90aa|down_2|CP016102.1_800860_801130_-	pfam12675, DUF3795, Protein of unknown function (DUF3795)	NA|101aa|down_3|CP016102.1_801261_801564_-	NA	NA|246aa|down_4|CP016102.1_802042_802780_-	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown]	NA|254aa|down_5|CP016102.1_802791_803553_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|305aa|down_6|CP016102.1_803552_804467_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|236aa|down_7|CP016102.1_804637_805345_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|469aa|down_8|CP016102.1_805389_806796_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|130aa|down_9|CP016102.1_808194_808584_+	pfam03965, Penicillinase_R, Penicillinase repressor
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	5	798820-798912	5	CRISPRCasFinder	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	ATTGATGGTAAAAAATATTACTTTAAT	27	0	0	NA	NA	?	1	1	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|44aa|up_0|CP016102.1_792028_792160_+,NA|101aa|down_3|CP016102.1_801261_801564_-	NA|615aa|up_9|CP016102.1_773484_775329_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|195aa|up_8|CP016102.1_776095_776680_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|245aa|up_7|CP016102.1_777478_778213_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|419aa|up_6|CP016102.1_779196_780453_+	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	NA|398aa|up_5|CP016102.1_780515_781709_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|127aa|up_4|CP016102.1_781910_782291_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|185aa|up_3|CP016102.1_783309_783864_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|2368aa|up_2|CP016102.1_784194_791298_+	pfam12920, TcdA_TcdB_pore, TcdA/TcdB pore forming domain	NA|167aa|up_1|CP016102.1_791419_791920_+	TIGR01593, Uncharacterized_protein_CPE0383, toxin secretion/phage lysis holin	NA|44aa|up_0|CP016102.1_792028_792160_+	NA	NA|233aa|down_0|CP016102.1_799282_799981_-	pfam12569, NARP1, NMDA receptor-regulated protein 1	NA|82aa|down_1|CP016102.1_800397_800643_+	pfam11731, Cdd1, Pathogenicity locus	NA|90aa|down_2|CP016102.1_800860_801130_-	pfam12675, DUF3795, Protein of unknown function (DUF3795)	NA|101aa|down_3|CP016102.1_801261_801564_-	NA	NA|246aa|down_4|CP016102.1_802042_802780_-	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown]	NA|254aa|down_5|CP016102.1_802791_803553_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|305aa|down_6|CP016102.1_803552_804467_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|236aa|down_7|CP016102.1_804637_805345_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|469aa|down_8|CP016102.1_805389_806796_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|130aa|down_9|CP016102.1_808194_808584_+	pfam03965, Penicillinase_R, Penicillinase repressor
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	6	1568770-1568997	1,6	PILER-CR,CRISPRCasFinder	no	DinG	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Type IV-A	TGTTTTATATTAACTAAGTGGTATGTAAATAAAATAAAATT,GTTTTATATTAACTAAGTGGTATGTAAATA	41,30	0	0	NA	NA	I-A:I-A	2,3	3	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|183aa|up_5|CP016102.1_1563456_1564005_-,NA|80aa|down_4|CP016102.1_1576146_1576386_+,NA|59aa|down_5|CP016102.1_1576572_1576749_-,NA|45aa|down_9|CP016102.1_1579362_1579497_+	NA|195aa|up_9|CP016102.1_1558644_1559229_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|481aa|up_8|CP016102.1_1559428_1560871_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_7|CP016102.1_1561186_1562131_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_6|CP016102.1_1562401_1563337_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_5|CP016102.1_1563456_1564005_-	NA	NA|143aa|up_4|CP016102.1_1564156_1564585_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|217aa|up_3|CP016102.1_1564669_1565320_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_2|CP016102.1_1565437_1566793_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|187aa|up_1|CP016102.1_1567296_1567857_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|119aa|up_0|CP016102.1_1567886_1568243_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|578aa|down_0|CP016102.1_1569321_1571055_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|CP016102.1_1571291_1572137_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|CP016102.1_1572167_1574402_-	cd01948, EAL, EAL domain	NA|270aa|down_3|CP016102.1_1575184_1575994_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|CP016102.1_1576146_1576386_+	NA	NA|59aa|down_5|CP016102.1_1576572_1576749_-	NA	NA|225aa|down_6|CP016102.1_1577240_1577915_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|CP016102.1_1578134_1578689_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|CP016102.1_1578766_1579132_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|45aa|down_9|CP016102.1_1579362_1579497_+	NA
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	7	1678190-1678876	7,1	CRISPRCasFinder,CRT	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29	0	0	NA	NA	I-A:I-A	10,10	10	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|190aa|up_7|CP016102.1_1668344_1668914_+,NA|61aa|up_4|CP016102.1_1671597_1671780_-,NA|323aa|down_4|CP016102.1_1683788_1684757_+	NA|195aa|up_9|CP016102.1_1666703_1667288_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|300aa|up_8|CP016102.1_1667440_1668340_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|CP016102.1_1668344_1668914_+	NA	NA|216aa|up_6|CP016102.1_1669080_1669728_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|CP016102.1_1670117_1671032_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|CP016102.1_1671597_1671780_-	NA	NA|283aa|up_3|CP016102.1_1672190_1673039_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|CP016102.1_1673057_1673885_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|299aa|up_1|CP016102.1_1673859_1674756_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|CP016102.1_1675435_1677529_+	cd01948, EAL, EAL domain	NA|273aa|down_0|CP016102.1_1679524_1680343_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_1|CP016102.1_1680475_1682596_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_2|CP016102.1_1682621_1682849_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_3|CP016102.1_1683175_1683616_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_4|CP016102.1_1683788_1684757_+	NA	NA|403aa|down_5|CP016102.1_1685233_1686442_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_6|CP016102.1_1686502_1687384_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_7|CP016102.1_1687799_1688714_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_8|CP016102.1_1688936_1689482_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	NA|383aa|down_9|CP016102.1_1689572_1690721_+	COG2006, COG2006, Uncharacterized conserved protein [Function unknown]
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	8	1769659-1769953	2,8,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAA,GTTTTAGATTAACTATATGGAATGTAAAT	29,28,29	0	0	NA	NA	I-A:NA:I-A	3,4,4	4	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|134aa|up_8|CP016102.1_1764344_1764746_+,NA|116aa|up_7|CP016102.1_1764739_1765087_+,NA|146aa|up_5|CP016102.1_1765504_1765942_+,NA|62aa|up_4|CP016102.1_1765925_1766111_+,NA|35aa|up_0|CP016102.1_1769263_1769368_+,NA|58aa|down_1|CP016102.1_1771126_1771300_+,NA|59aa|down_3|CP016102.1_1772299_1772476_+	NA|78aa|up_9|CP016102.1_1764101_1764335_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_8|CP016102.1_1764344_1764746_+	NA	NA|116aa|up_7|CP016102.1_1764739_1765087_+	NA	NA|142aa|up_6|CP016102.1_1765086_1765512_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_5|CP016102.1_1765504_1765942_+	NA	NA|62aa|up_4|CP016102.1_1765925_1766111_+	NA	NA|437aa|up_3|CP016102.1_1766111_1767422_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_2|CP016102.1_1767438_1767909_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_1|CP016102.1_1767980_1768421_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|35aa|up_0|CP016102.1_1769263_1769368_+	NA	NA|251aa|down_0|CP016102.1_1770070_1770823_+	pfam09851, SHOCT, Short C-terminal domain	NA|58aa|down_1|CP016102.1_1771126_1771300_+	NA	NA|276aa|down_2|CP016102.1_1771423_1772251_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|59aa|down_3|CP016102.1_1772299_1772476_+	NA	NA|187aa|down_4|CP016102.1_1772906_1773467_+	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain	NA|789aa|down_5|CP016102.1_1773542_1775909_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|234aa|down_6|CP016102.1_1775924_1776626_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|655aa|down_7|CP016102.1_1776618_1778583_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_8|CP016102.1_1778596_1778857_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_9|CP016102.1_1778861_1779281_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	9	1772553-1772778	3,9	CRT,CRISPRCasFinder	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTTTATATTAACTATGTGGTATGTAAAT,TTTTATATTAACTATGTGGTATGTAAAT	29,28	0	0	NA	NA	I-A:I-A	3,3	3	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|146aa|up_9|CP016102.1_1765504_1765942_+,NA|62aa|up_8|CP016102.1_1765925_1766111_+,NA|35aa|up_4|CP016102.1_1769263_1769368_+,NA|58aa|up_2|CP016102.1_1771126_1771300_+,NA|59aa|up_0|CP016102.1_1772299_1772476_+,NA	NA|146aa|up_9|CP016102.1_1765504_1765942_+	NA	NA|62aa|up_8|CP016102.1_1765925_1766111_+	NA	NA|437aa|up_7|CP016102.1_1766111_1767422_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_6|CP016102.1_1767438_1767909_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_5|CP016102.1_1767980_1768421_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|35aa|up_4|CP016102.1_1769263_1769368_+	NA	NA|251aa|up_3|CP016102.1_1770070_1770823_+	pfam09851, SHOCT, Short C-terminal domain	NA|58aa|up_2|CP016102.1_1771126_1771300_+	NA	NA|276aa|up_1|CP016102.1_1771423_1772251_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|59aa|up_0|CP016102.1_1772299_1772476_+	NA	NA|187aa|down_0|CP016102.1_1772906_1773467_+	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain	NA|789aa|down_1|CP016102.1_1773542_1775909_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|234aa|down_2|CP016102.1_1775924_1776626_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|655aa|down_3|CP016102.1_1776618_1778583_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_4|CP016102.1_1778596_1778857_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_5|CP016102.1_1778861_1779281_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|349aa|down_6|CP016102.1_1779281_1780328_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_7|CP016102.1_1780320_1780938_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|331aa|down_8|CP016102.1_1780949_1781942_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|571aa|down_9|CP016102.1_1781958_1783671_+	pfam12810, Gly_rich, Glycine rich protein
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	10	1904103-1904522	3,10,4	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,6	6	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA,NA|96aa|down_0|CP016102.1_1904928_1905216_+,NA|33aa|down_1|CP016102.1_1905240_1905339_+,NA|59aa|down_6|CP016102.1_1911601_1911778_-,NA|341aa|down_7|CP016102.1_1912345_1913368_+,NA|258aa|down_9|CP016102.1_1914274_1915048_+	NA|200aa|up_9|CP016102.1_1887343_1887943_-	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only]	NA|266aa|up_8|CP016102.1_1888045_1888843_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_7|CP016102.1_1889152_1890139_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_6|CP016102.1_1890621_1892352_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_5|CP016102.1_1892876_1893392_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_4|CP016102.1_1894181_1896656_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_3|CP016102.1_1896655_1898113_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_2|CP016102.1_1898535_1900893_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_1|CP016102.1_1900978_1901296_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|424aa|up_0|CP016102.1_1902186_1903458_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|CP016102.1_1904928_1905216_+	NA	NA|33aa|down_1|CP016102.1_1905240_1905339_+	NA	NA|184aa|down_2|CP016102.1_1905754_1906306_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_3|CP016102.1_1906496_1907459_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_4|CP016102.1_1907750_1909595_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_5|CP016102.1_1909915_1910500_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_6|CP016102.1_1911601_1911778_-	NA	NA|341aa|down_7|CP016102.1_1912345_1913368_+	NA	NA|296aa|down_8|CP016102.1_1913381_1914269_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_9|CP016102.1_1914274_1915048_+	NA
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	11	2732254-2732414	11,4	CRISPRCasFinder,PILER-CR	no	cas3,cas5,cas7,cas6,c2c9_V-U4	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Unclear	TGAAATCCACTTAGTTAATCTTAAAC,TAGGTTTAAGATTAACTAAGTGGATTTCA	26,29	0	0	NA	NA	NA:NA	2,2	2	Unclear	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA,NA|489aa|down_3|CP016102.1_2736835_2738302_-	NA|448aa|up_9|CP016102.1_2724710_2726054_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|CP016102.1_2726066_2726303_-	pfam07873, YabP, YabP family	NA|188aa|up_7|CP016102.1_2726517_2727081_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|CP016102.1_2727273_2727771_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|CP016102.1_2727881_2728325_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|CP016102.1_2728354_2728534_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|CP016102.1_2728696_2729047_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|CP016102.1_2729089_2730388_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|CP016102.1_2730389_2731148_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|CP016102.1_2731166_2732114_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|CP016102.1_2732554_2734963_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|266aa|down_1|CP016102.1_2734989_2735787_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|CP016102.1_2735802_2736816_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|489aa|down_3|CP016102.1_2736835_2738302_-	NA	cas6|246aa|down_4|CP016102.1_2738306_2739044_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|153aa|down_5|CP016102.1_2739357_2739816_+	COG2452, COG2452, Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]	c2c9_V-U4|388aa|down_6|CP016102.1_2739852_2741016_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|370aa|down_7|CP016102.1_2741168_2742278_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_8|CP016102.1_2742307_2743075_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|458aa|down_9|CP016102.1_2743262_2744636_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	12	2822003-2822421	5,5,12	CRT,PILER-CR,CRISPRCasFinder	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	ATTCCATATAGTNTAATATAAAAC,GTTTTATATTAACTATATGGAATGTAAATT,ATTTACATTCCATATAGTTAATATAAAAC	24,30,29	0	0	NA	NA	NA:I-A:I-A	6,2,5	6	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA|59aa|up_6|CP016102.1_2817456_2817633_+,NA|53aa|down_0|CP016102.1_2822706_2822865_-	NA|543aa|up_9|CP016102.1_2813764_2815393_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_8|CP016102.1_2815513_2816509_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|128aa|up_7|CP016102.1_2816693_2817077_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|59aa|up_6|CP016102.1_2817456_2817633_+	NA	NA|67aa|up_5|CP016102.1_2817858_2818059_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|441aa|up_4|CP016102.1_2818504_2819827_+	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|194aa|up_3|CP016102.1_2819869_2820451_+	pfam04647, AgrB, Accessory gene regulator B	NA|54aa|up_2|CP016102.1_2820468_2820630_+	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|266aa|up_1|CP016102.1_2820651_2821449_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|87aa|up_0|CP016102.1_2821445_2821706_-	pfam16079, Phage_holin_5_2, Phage holin family Hol44, in holin superfamily V	NA|53aa|down_0|CP016102.1_2822706_2822865_-	NA	NA|457aa|down_1|CP016102.1_2823222_2824593_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|141aa|down_2|CP016102.1_2824991_2825414_+	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain	NA|223aa|down_3|CP016102.1_2826399_2827068_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_4|CP016102.1_2827949_2830370_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_5|CP016102.1_2830723_2831074_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_6|CP016102.1_2831190_2831763_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_7|CP016102.1_2831763_2832453_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_8|CP016102.1_2832728_2833367_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_9|CP016102.1_2833519_2835523_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	18	3713076-3713279	18	CRISPRCasFinder	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	TCATCATATAAACCTATTAAATATTATCTTATTTATTGGTATATGGAAT	49	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA,NA|176aa|down_1|CP016102.1_3716825_3717353_-,NA|132aa|down_6|CP016102.1_3722493_3722889_+	NA|82aa|up_9|CP016102.1_3702063_3702309_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|373aa|up_8|CP016102.1_3702439_3703558_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|398aa|up_7|CP016102.1_3703763_3704957_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|up_6|CP016102.1_3705279_3706161_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|334aa|up_5|CP016102.1_3706590_3707592_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|296aa|up_4|CP016102.1_3707708_3708596_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|250aa|up_3|CP016102.1_3708662_3709412_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|239aa|up_2|CP016102.1_3709630_3710347_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|330aa|up_1|CP016102.1_3710777_3711767_-	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|252aa|up_0|CP016102.1_3712206_3712962_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|561aa|down_0|CP016102.1_3715047_3716730_-	pfam07508, Recombinase, Recombinase	NA|176aa|down_1|CP016102.1_3716825_3717353_-	NA	NA|146aa|down_2|CP016102.1_3717786_3718224_-	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|328aa|down_3|CP016102.1_3718697_3719681_-	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only]	NA|119aa|down_4|CP016102.1_3720239_3720596_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|446aa|down_5|CP016102.1_3721087_3722425_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|132aa|down_6|CP016102.1_3722493_3722889_+	NA	NA|389aa|down_7|CP016102.1_3723151_3724318_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|397aa|down_8|CP016102.1_3724516_3725707_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|69aa|down_9|CP016102.1_3725732_3725939_-	pfam14203, TTRAP, Putative tranposon-transfer assisting protein
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	19	3713812-3714393	6	CRT	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	TGCTCCGGTTGGNCCTGTTGNTCC	24	0	0	NA	NA	NA	9	9	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA,NA|176aa|down_1|CP016102.1_3716825_3717353_-,NA|132aa|down_6|CP016102.1_3722493_3722889_+	NA|82aa|up_9|CP016102.1_3702063_3702309_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|373aa|up_8|CP016102.1_3702439_3703558_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|398aa|up_7|CP016102.1_3703763_3704957_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|up_6|CP016102.1_3705279_3706161_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|334aa|up_5|CP016102.1_3706590_3707592_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|296aa|up_4|CP016102.1_3707708_3708596_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|250aa|up_3|CP016102.1_3708662_3709412_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|239aa|up_2|CP016102.1_3709630_3710347_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|330aa|up_1|CP016102.1_3710777_3711767_-	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|252aa|up_0|CP016102.1_3712206_3712962_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|561aa|down_0|CP016102.1_3715047_3716730_-	pfam07508, Recombinase, Recombinase	NA|176aa|down_1|CP016102.1_3716825_3717353_-	NA	NA|146aa|down_2|CP016102.1_3717786_3718224_-	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|328aa|down_3|CP016102.1_3718697_3719681_-	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only]	NA|119aa|down_4|CP016102.1_3720239_3720596_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|446aa|down_5|CP016102.1_3721087_3722425_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|132aa|down_6|CP016102.1_3722493_3722889_+	NA	NA|389aa|down_7|CP016102.1_3723151_3724318_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|397aa|down_8|CP016102.1_3724516_3725707_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|69aa|down_9|CP016102.1_3725732_3725939_-	pfam14203, TTRAP, Putative tranposon-transfer assisting protein
GCA_003482255.1_ASM348225v1	CP016102	Clostridioides difficile strain DSM 29627 chromosome, complete genome	20	4062287-4062421	19	CRISPRCasFinder	no		csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	Orphan	GTTGCTTAAAGTGCTAACGCACAGCGCCAAC	31	1	2	4062318-4062390|4062318-4062390	CP016102.1_32190-32118|CP016102.1_1158966-1158894	NA	1	1	Orphan	csa3,cas14j,PD-DExK,WYL,c2c9_V-U4,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6	NA,NA|65aa|down_0|CP016102.1_4064303_4064498_-	NA|477aa|up_9|CP016102.1_4050059_4051490_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|143aa|up_8|CP016102.1_4051526_4051955_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|235aa|up_7|CP016102.1_4052142_4052847_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|278aa|up_6|CP016102.1_4052869_4053703_-	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|249aa|up_5|CP016102.1_4053703_4054450_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|298aa|up_4|CP016102.1_4054527_4055421_-	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|312aa|up_3|CP016102.1_4055417_4056353_-	PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated	NA|230aa|up_2|CP016102.1_4056355_4057045_-	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]	NA|470aa|up_1|CP016102.1_4057165_4058575_-	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|64aa|up_0|CP016102.1_4058729_4058921_-	pfam04070, DUF378, Domain of unknown function (DUF378)	NA|65aa|down_0|CP016102.1_4064303_4064498_-	NA	NA|510aa|down_1|CP016102.1_4064806_4066336_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|160aa|down_2|CP016102.1_4066350_4066830_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|323aa|down_3|CP016102.1_4066938_4067907_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|257aa|down_4|CP016102.1_4068043_4068814_-	PRK13318, PRK13318, type III pantothenate kinase	NA|197aa|down_5|CP016102.1_4068832_4069423_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|323aa|down_6|CP016102.1_4069605_4070574_-	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC	NA|326aa|down_7|CP016102.1_4070566_4071544_-	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|657aa|down_8|CP016102.1_4071865_4073836_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|463aa|down_9|CP016102.1_4073869_4075258_-	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain
