The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP016104	Clostridioides difficile strain DSM 29629 chromosome, complete genome	4111235	277036	293217	4111235		Synechococcus_phage(23.08%)	14	NA	NA
AXU48541.1|277036_277549_-	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	87.6	7.8e-84
AXU48542.1|277998_278475_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AXU48543.1|278480_279179_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AXU48544.1|279190_280558_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AXU48545.1|280551_281628_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AXU48546.1|281621_282215_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	5.6e-25
AXU48547.1|282207_283740_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AXU48548.1|283750_285001_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXU48549.1|285025_288832_+	formylglycinamidine ribonucleotide synthetase	NA	A6N228	Microbacterium_phage	24.1	6.8e-31
AXU48550.1|289032_289905_+	dtdp-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.1	2.9e-38
AXU48551.1|290014_290884_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	62.2	1.2e-97
AXU48552.1|290933_291491_+	dtdp-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.4	7.5e-48
AXU48553.1|291526_292510_+	dtdp-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.1	5.9e-80
AXU48554.1|292548_293217_+	transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	45.7	4.5e-23
>prophage 2
CP016104	Clostridioides difficile strain DSM 29629 chromosome, complete genome	4111235	662412	706408	4111235	coat,transposase,tRNA	Streptococcus_phage(22.22%)	34	NA	NA
AXU48877.1|662412_664332_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
AXU48878.1|665089_666205_+|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
AXU48879.1|666426_667464_-	hypothetical protein	NA	NA	NA	NA	NA
AXU48880.1|667456_668143_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
AXU48881.1|668154_668475_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU48882.1|668835_670176_+	two-component sensor histidine kinase	NA	X5JAC0	Clostridium_phage	37.4	1.5e-73
AXU48883.1|670817_671387_-	putative HD superfamily hydrolase	NA	NA	NA	NA	NA
AXU48884.1|671547_672798_-	efflux protein	NA	NA	NA	NA	NA
AXU48885.1|672806_673040_-	hypothetical protein	NA	NA	NA	NA	NA
AXU48886.1|673090_673669_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU48887.1|673969_675430_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXU48888.1|675814_676420_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU48889.1|676422_678990_+	PEP-utilizing kinase	NA	A0A1V0SGR7	Hokovirus	39.2	2.7e-47
AXU48890.1|679249_681334_-	signaling protein	NA	NA	NA	NA	NA
AXU48891.1|681381_682611_-	signaling protein	NA	NA	NA	NA	NA
AXU48892.1|682612_683791_-	signaling protein	NA	G3MA91	Bacillus_virus	26.9	8.6e-09
AXU48893.1|684733_686173_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU48894.1|686485_686665_+	hypothetical protein	NA	NA	NA	NA	NA
AXU48895.1|687283_687559_+	hypothetical protein	NA	NA	NA	NA	NA
AXU48896.1|687578_687866_+	hypothetical protein	NA	NA	NA	NA	NA
AXU48897.1|688389_690885_+	hypothetical protein	NA	NA	NA	NA	NA
AXU48898.1|690899_696080_+	hypothetical protein	NA	NA	NA	NA	NA
AXU48899.1|696284_697151_-	cation transporting ATPase	NA	E4ZFI9	Streptococcus_phage	29.5	1.9e-29
AXU48900.1|697343_698099_-|transposase	transposase-like protein b	transposase	A0A0H3UZC2	Geobacillus_virus	56.6	8.0e-77
AXU48901.1|698077_698452_-|transposase	transposase-like protein B	transposase	S6AND0	Bacillus_phage	51.5	5.3e-21
AXU48902.1|699198_700359_-	cation transporting ATPase	NA	NA	NA	NA	NA
AXU48903.1|700401_700797_-	hypothetical protein	NA	NA	NA	NA	NA
AXU48904.1|701737_701926_+	hypothetical protein	NA	NA	NA	NA	NA
AXU48905.1|702107_702548_-	hypothetical protein	NA	NA	NA	NA	NA
AXU48906.1|702902_704216_+	putative phosphoadenosine phosphosulfate sulfotransferase	NA	A0A068F1U8	Mycobacterium_phage	38.9	9.6e-94
AXU48907.1|704233_704770_+	ParB-like nuclease domain protein	NA	A0A220GKT8	Streptococcus_phage	69.7	1.2e-63
AXU48908.1|705289_705511_+|coat	Spore coat associated protein JA (CotJA)	coat	NA	NA	NA	NA
AXU48909.1|705510_705774_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU48910.1|705835_706408_+|coat	spore-coat protein	coat	NA	NA	NA	NA
>prophage 3
CP016104	Clostridioides difficile strain DSM 29629 chromosome, complete genome	4111235	781268	852556	4111235	tRNA,transposase,protease	Bacillus_phage(23.53%)	57	NA	NA
AXU48977.1|781268_782312_+|protease	serine protease	protease	NA	NA	NA	NA
AXU48978.1|782409_783129_+	antimicrobial peptide ABC transporter ATPase	NA	G9BWD6	Planktothrix_phage	34.1	1.0e-28
AXU48979.1|783262_785107_+	multidrug ABC transporter ATPase and permease	NA	W8CYL7	Bacillus_phage	25.9	8.6e-40
AXU48980.1|785873_786458_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	39.4	1.8e-31
AXU48981.1|787256_787991_+	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA	NA
AXU48982.1|788936_790193_+	chloride ion channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.8	2.4e-94
AXU48983.1|790255_791449_+	Na(+)/H(+) antiporter	NA	NA	NA	NA	NA
AXU48984.1|791650_792031_+	regulatory protein	NA	A0A0A8WHZ2	Clostridium_phage	64.2	5.3e-37
AXU48985.1|792336_792582_+	Pathogenicity locus	NA	NA	NA	NA	NA
AXU48986.1|792799_793069_-	hypothetical protein	NA	NA	NA	NA	NA
AXU48987.1|793241_793700_-	hypothetical protein	NA	NA	NA	NA	NA
AXU48988.1|794178_794916_-	lantibiotic ABC transporter permease	NA	NA	NA	NA	NA
AXU48989.1|794927_795689_-	lantibiotic ABC transporter permease	NA	NA	NA	NA	NA
AXU48990.1|795688_796603_-	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.2	1.3e-41
AXU48991.1|796773_797481_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	36.4	4.2e-35
AXU48992.1|797525_798932_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	24.2	1.5e-07
AXU48993.1|800330_800720_+	regulatory protein	NA	A0A0A8WFF9	Clostridium_phage	47.2	2.1e-28
AXU48994.1|801410_801935_+	glyoxalase	NA	NA	NA	NA	NA
AXU48995.1|802254_803124_+	dinuclear metal center protein, YbgI/ family	NA	NA	NA	NA	NA
AXU48996.1|803855_804563_+	methyltransferase type 11	NA	NA	NA	NA	NA
AXU48997.1|805138_805639_+	acetyltransferase	NA	NA	NA	NA	NA
AXU48998.1|805846_806626_-	hypothetical protein	NA	NA	NA	NA	NA
AXU48999.1|806622_807102_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXU49000.1|807919_808621_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49001.1|808646_809303_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49002.1|809612_811253_+	amidohydrolase 3	NA	NA	NA	NA	NA
AXU49003.1|811609_812932_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU49004.1|813128_813434_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49005.1|814084_815194_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.1e-110
AXU49006.1|815344_816016_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49007.1|816053_817466_+	putative ester cyclase	NA	NA	NA	NA	NA
AXU49008.1|817610_818876_+	transporter	NA	NA	NA	NA	NA
AXU49009.1|818893_820516_+	sodium:solute symporter	NA	A0A240F3J2	Aeromonas_phage	26.0	4.2e-22
AXU49010.1|820550_821573_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AXU49011.1|822017_823421_-	ATP-dependent peptidase	NA	H8ZJI5	Ostreococcus_tauri_virus	44.7	6.2e-99
AXU49012.1|824450_824876_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	37.9	2.3e-12
AXU49013.1|824903_825098_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AXU49014.1|825152_825509_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AXU49015.1|825818_826364_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49016.1|826800_828726_+	nucleotide phosphodiesterase	NA	NA	NA	NA	NA
AXU49017.1|829120_831025_+	nucleotide phosphodiesterase	NA	NA	NA	NA	NA
AXU49018.1|831484_832264_+	short chain dehydrogenase	NA	NA	NA	NA	NA
AXU49019.1|832999_833242_-|transposase	transposase-like protein b	transposase	A0A0H3UZC2	Geobacillus_virus	63.8	4.9e-28
AXU49020.1|833247_834075_-|transposase	transposase-like protein B	transposase	S6AND0	Bacillus_phage	50.6	7.7e-65
AXU49021.1|834725_835292_-	carbon-phosphorus lyase complex accessory protein	NA	NA	NA	NA	NA
AXU49022.1|836163_836982_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXU49023.1|837149_837731_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU49024.1|837727_837922_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49025.1|838085_839828_-	exported peptidase	NA	NA	NA	NA	NA
AXU49026.1|840256_841633_+	cation transport protein	NA	NA	NA	NA	NA
AXU49027.1|841932_842604_+	cation transport protein	NA	NA	NA	NA	NA
AXU49028.1|842792_843590_+	RNA methylase	NA	NA	NA	NA	NA
AXU49029.1|844256_845276_+|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	36.4	4.3e-33
AXU49030.1|845292_847686_+|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
AXU49031.1|847710_848301_+	Z ring-associated protein ZapA	NA	NA	NA	NA	NA
AXU49032.1|848641_849325_+	putative membrane protein	NA	NA	NA	NA	NA
AXU49033.1|849973_852556_+|protease	protease	protease	Q6DW11	Phage_TP	30.2	1.3e-28
>prophage 4
CP016104	Clostridioides difficile strain DSM 29629 chromosome, complete genome	4111235	1482106	1506485	4111235	tail	Clostridium_phage(54.55%)	29	NA	NA
AXU49592.1|1482106_1482307_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AXU49593.1|1482727_1483156_+	regulatory protein	NA	NA	NA	NA	NA
AXU49594.1|1483298_1484054_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
AXU49595.1|1484174_1484591_-	hypothetical protein	NA	NA	NA	NA	NA
AXU49596.1|1484754_1485261_-	phage protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AXU49597.1|1485342_1485663_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AXU49598.1|1485831_1486029_+	phage regulatory protein	NA	NA	NA	NA	NA
AXU49599.1|1486132_1486573_+	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
AXU49600.1|1486821_1487265_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	37.4	4.1e-20
AXU49601.1|1487269_1488334_+	phage-like element pbsx protein XkdK	NA	A0A1V0DZX4	Clostridioides_phage	53.1	2.0e-97
AXU49602.1|1488347_1488776_+	phage-like element pbsx protein XkdM	NA	A0A1V0DZX1	Clostridioides_phage	51.8	3.6e-34
AXU49603.1|1488889_1489336_+	Phage XkdN-like protein	NA	A0A0A7RTP2	Clostridium_phage	36.4	1.4e-12
AXU49604.1|1489362_1489530_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49605.1|1489529_1491929_+	phage protein	NA	A0A1V0DZX3	Clostridioides_phage	45.6	6.4e-19
AXU49606.1|1491928_1492351_+	phage-like element pbsx protein xkdP	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AXU49607.1|1492632_1494165_+	phage cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	79.5	3.5e-236
AXU49608.1|1494180_1494507_+	hypothetical protein	NA	J9QE86	Clostridium_phage	92.6	1.9e-51
AXU49609.1|1494506_1494935_+	phage protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AXU49610.1|1494927_1495980_+	phage protein	NA	A0A0A8WFP3	Clostridium_phage	70.4	6.0e-139
AXU49611.1|1495976_1496675_+	phage protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
AXU49612.1|1496675_1497662_+|tail	phage tail fiber protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
AXU49613.1|1497683_1502915_+	RCC1 domain-containing protein, alpha-tubulin suppressor	NA	A0A0A8WEY5	Clostridium_phage	31.3	5.2e-82
AXU49614.1|1502931_1503285_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	43.0	5.5e-12
AXU49615.1|1503547_1503808_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AXU49616.1|1504018_1504474_-	hypothetical protein	NA	NA	NA	NA	NA
AXU49617.1|1504701_1505121_-	phage regulatory protein	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AXU49618.1|1505419_1505629_+	phage regulatory protein	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AXU49619.1|1505660_1505870_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49620.1|1506086_1506485_-	phage regulatory protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP016104	Clostridioides difficile strain DSM 29629 chromosome, complete genome	4111235	1588223	1597952	4111235		Pandoravirus(37.5%)	11	NA	NA
AXU49691.1|1588223_1588808_+	para-aminobenzoate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.7	1.7e-58
AXU49692.1|1588809_1590159_+	para-aminobenzoate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.9e-37
AXU49693.1|1590148_1590892_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AXU49694.1|1590925_1591627_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49695.1|1591652_1592225_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AXU49696.1|1592290_1593082_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.0	9.8e-25
AXU49697.1|1593092_1593458_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXU49698.1|1593450_1593957_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	S4VNV0	Pandoravirus	36.6	2.5e-13
AXU49699.1|1593937_1594723_+	chorismate biosynthesis-like protein	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
AXU49700.1|1594977_1596768_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AXU49701.1|1596785_1597952_+	RNA polymerase sigma factor (sigma-43)	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 6
CP016104	Clostridioides difficile strain DSM 29629 chromosome, complete genome	4111235	1723415	1779990	4111235	head,portal,tail,capsid,terminase,holin	Clostridium_phage(84.75%)	70	NA	NA
AXU49812.1|1723415_1725104_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.2	4.9e-50
AXU49813.1|1725461_1726592_-	prophage lambdaba04, site-specific recombinase	NA	A0A0A8WIE1	Clostridium_phage	99.2	3.3e-215
AXU49814.1|1726831_1727338_-	putative Zn peptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
AXU49815.1|1727414_1727963_-	phage regulatory protein	NA	A0A0A8WJ60	Clostridium_phage	97.3	4.2e-91
AXU49816.1|1727974_1728316_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
AXU49817.1|1728492_1728696_+	DNA-binding protein	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
AXU49818.1|1729731_1729911_-	Mnt	NA	A0A0A8WG21	Clostridium_phage	70.9	1.9e-13
AXU49819.1|1730046_1730226_+	hypothetical protein	NA	A0A0A8WJW4	Clostridium_phage	58.2	9.9e-10
AXU49820.1|1730218_1731022_+	phage anti-repressor	NA	X5JAW6	Clostridium_phage	68.1	1.0e-90
AXU49821.1|1731062_1731671_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49822.1|1731818_1731989_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49823.1|1732150_1732543_+	Helix-turn-helix domain protein	NA	A0A0A8WHS2	Clostridium_phage	89.9	5.3e-56
AXU49824.1|1732523_1732673_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
AXU49825.1|1732743_1733181_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49826.1|1733192_1734359_+	phage-like protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.1e-117
AXU49827.1|1734373_1734709_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49828.1|1734761_1735334_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXU49829.1|1735356_1735929_+	phage-like protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AXU49830.1|1735928_1737887_+	dna-directed dna polymerase i	NA	A0A0A7RTL3	Clostridium_phage	68.8	3.3e-263
AXU49831.1|1737898_1740316_+	virulence-associated protein e	NA	A0A0A7RTG3	Clostridium_phage	67.8	0.0e+00
AXU49832.1|1740281_1740425_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49833.1|1740597_1740924_+	VRR-NUC domain-containing protein	NA	A0A0A7RTE1	Clostridium_phage	51.7	8.4e-15
AXU49834.1|1740872_1742243_+	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	NA	A0A1S7FYY5	Listeria_phage	60.3	8.4e-157
AXU49835.1|1742396_1742876_+	sigma-70 region 4 type 2	NA	I2E8Y5	Clostridium_phage	51.6	3.3e-36
AXU49836.1|1743361_1743598_+	anti-repressor	NA	A0A0A8WJQ8	Clostridium_phage	96.2	3.3e-37
AXU49837.1|1743898_1744873_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49838.1|1744893_1745403_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49839.1|1745473_1746166_+	phage DNA-binding protein	NA	A0A0A8WFS6	Clostridium_phage	98.7	3.4e-122
AXU49840.1|1746143_1747397_+|terminase	phage terminase large subunit	terminase	A0A0A8WFI5	Clostridium_phage	99.3	4.0e-246
AXU49841.1|1747402_1748842_+|portal	phage portal protein	portal	A0A0A8WFC0	Clostridium_phage	99.2	7.7e-278
AXU49842.1|1748831_1750229_+|head	phage minor head protein	head	A0A0A8WJ84	Clostridium_phage	97.0	8.0e-264
AXU49843.1|1750243_1750444_+	hypothetical protein	NA	A0A0A8WJ56	Clostridium_phage	100.0	2.3e-31
AXU49844.1|1750509_1751073_+	phage scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	99.5	6.4e-87
AXU49845.1|1751084_1751984_+|capsid	phage major capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	99.3	1.1e-168
AXU49846.1|1751983_1752217_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	96.1	5.4e-32
AXU49847.1|1752226_1752628_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.7	1.6e-68
AXU49848.1|1752621_1752969_+	phage protein	NA	X5JAV9	Clostridium_phage	98.3	1.6e-56
AXU49849.1|1752968_1753394_+	phage protein	NA	X5JB35	Clostridium_phage	98.6	1.9e-75
AXU49850.1|1753386_1753824_+	phage protein	NA	X5JAB5	Clostridium_phage	92.4	2.8e-74
AXU49851.1|1753807_1753993_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	87.9	6.4e-20
AXU49852.1|1753993_1755304_+	phage protein	NA	X5JAJ1	Clostridium_phage	93.3	6.2e-234
AXU49853.1|1755320_1755791_+	phage protein	NA	A0A0A8WJ62	Clostridium_phage	82.1	7.0e-71
AXU49854.1|1755862_1756303_+	phage protein	NA	X5JAB6	Clostridium_phage	63.7	8.6e-47
AXU49855.1|1757145_1757250_+	hypothetical protein	NA	A0A090D809	Clostridium_phage	73.5	1.9e-05
AXU49856.1|1759678_1759849_+	Ribbon-helix-helix protein, copG family	NA	NA	NA	NA	NA
AXU49857.1|1759976_1760819_+	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	71.4	1.4e-82
AXU49858.1|1760871_1761030_+	hypothetical protein	NA	NA	NA	NA	NA
AXU49859.1|1761587_1762370_+	hypothetical protein	NA	X5JB37	Clostridium_phage	48.5	3.6e-48
AXU49860.1|1762433_1764785_+|tail	phage tail tape measure protein	tail	X5JAB7	Clostridium_phage	57.7	5.5e-225
AXU49861.1|1764800_1765490_+	phage cell wall hydrolase	NA	X5J9Z8	Clostridium_phage	93.9	8.6e-118
AXU49862.1|1765482_1767447_+	phage cell wall hydrolase	NA	A0A0A8WIF2	Clostridium_phage	87.7	7.2e-312
AXU49863.1|1767460_1767721_+	phage protein	NA	A0A0A8WJ65	Clostridium_phage	96.5	2.5e-38
AXU49864.1|1767725_1768145_+	phage protein	NA	A0A0A8WJV8	Clostridium_phage	98.6	3.9e-73
AXU49865.1|1768145_1769195_+	phage protein	NA	A0A0A8WFK0	Clostridium_phage	96.0	1.2e-187
AXU49866.1|1769187_1769805_+	phage protein	NA	A0A0A8WII4	Clostridium_phage	96.6	5.7e-113
AXU49867.1|1769816_1770809_+|tail	phage tail fiber protein	tail	A3QSB7	Clostridium_virus	95.0	2.1e-162
AXU49868.1|1770823_1772476_+	Glycine rich protein	NA	B6SBV0	Clostridium_virus	77.4	5.7e-168
AXU49869.1|1772500_1772848_+	hypothetical protein	NA	A3QSB8	Clostridium_virus	85.2	1.5e-46
AXU49870.1|1772859_1773030_+	hypothetical protein	NA	A0A0A8WHY8	Clostridium_phage	66.1	1.8e-13
AXU49871.1|1773063_1773255_+	hypothetical protein	NA	A3QSB9	Clostridium_virus	90.5	7.0e-22
AXU49872.1|1773267_1773855_+|tail	tail fiber protein	tail	E2ELK5	Clostridium_phage	43.3	1.2e-40
AXU49873.1|1773867_1774173_+	hypothetical protein	NA	E2ELK6	Clostridium_phage	87.1	1.5e-45
AXU49874.1|1774172_1774355_+	hypothetical protein	NA	J9QDY8	Clostridium_phage	91.7	1.6e-23
AXU49875.1|1774390_1774621_+	Hemolysin XhlA	NA	A0A0A8WJR7	Clostridium_phage	97.4	4.8e-33
AXU49876.1|1774640_1774898_+|holin	holin	holin	A0A0A8WF70	Clostridium_phage	95.3	6.6e-39
AXU49877.1|1775158_1776022_+	AbiF-like protein	NA	A3QSC6	Clostridium_virus	99.3	1.9e-162
AXU49878.1|1776100_1776913_+	N-acetylmuramoyl-l-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
AXU49879.1|1777006_1779406_+	penicillin-binding protein	NA	NA	NA	NA	NA
AXU49880.1|1779447_1779624_-	putative PemI	NA	A0A0A8WHQ4	Clostridium_phage	63.8	4.2e-13
AXU49881.1|1779861_1779990_-	hypothetical protein	NA	A0A0A8WEJ5	Clostridium_phage	95.2	5.8e-12
>prophage 7
CP016104	Clostridioides difficile strain DSM 29629 chromosome, complete genome	4111235	2103853	2110045	4111235	transposase	Clostridium_phage(33.33%)	8	NA	NA
AXU50179.1|2103853_2104642_-	phage-related cell wall hydrolase	NA	A0A0A8WE15	Clostridium_phage	62.7	8.6e-90
AXU50180.1|2104780_2105218_-	phage-related deoxycytidylate deaminase	NA	A7KUY9	Bacillus_phage	54.3	5.9e-32
AXU50181.1|2105452_2105587_-	hypothetical protein	NA	B6SBZ7	Clostridium_virus	78.0	6.2e-09
AXU50182.1|2106055_2106355_+|transposase	transposase	transposase	A0A0A8WJI7	Clostridium_phage	94.2	2.7e-20
AXU50183.1|2106631_2107141_+	phage repressor	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	43.8	1.0e-06
AXU50184.1|2107529_2108066_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AXU50185.1|2108502_2109303_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU50186.1|2109292_2110045_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.3	3.1e-28
>prophage 8
CP016104	Clostridioides difficile strain DSM 29629 chromosome, complete genome	4111235	2518875	2530657	4111235	tail	Clostridium_phage(83.33%)	13	NA	NA
AXU50542.1|2518875_2519622_-	phage-related cell wall hydrolase	NA	A0A0A8WHU0	Clostridium_phage	67.5	3.9e-84
AXU50543.1|2519621_2519879_-	phage membrane protein	NA	A0A0A8WF70	Clostridium_phage	83.5	2.6e-35
AXU50544.1|2519898_2520129_-	Hemolysin XhlA	NA	A0A0A8WEZ7	Clostridium_phage	97.4	4.8e-33
AXU50545.1|2520186_2521734_-	Glycine rich protein	NA	B6SBV0	Clostridium_virus	77.7	1.5e-186
AXU50546.1|2521868_2522051_-	hypothetical protein	NA	J9QDY8	Clostridium_phage	90.0	1.2e-23
AXU50547.1|2522130_2522343_-	hypothetical protein	NA	J9QEB9	Clostridium_phage	78.6	4.9e-24
AXU50548.1|2522356_2523850_-	hypothetical protein	NA	J9QE87	Clostridium_phage	55.5	2.7e-108
AXU50549.1|2523865_2524213_-|tail	phage tail fiber protein	tail	J9QED3	Clostridium_phage	67.6	7.1e-20
AXU50550.1|2524200_2525622_-	phage protein	NA	A0A0A8WFK0	Clostridium_phage	83.6	1.6e-155
AXU50551.1|2525884_2526319_+	hypothetical protein	NA	NA	NA	NA	NA
AXU50552.1|2526406_2527966_-	cell surface protein	NA	A0A2R2ZGK6	Clostridioides_phage	51.7	4.2e-72
AXU50553.1|2529948_2530125_-	regulatory protein	NA	A0A0A8WFF9	Clostridium_phage	77.5	3.3e-10
AXU50554.1|2530279_2530657_-	regulatory protein	NA	A0A0A8WJU1	Clostridium_phage	92.0	1.3e-54
>prophage 9
CP016104	Clostridioides difficile strain DSM 29629 chromosome, complete genome	4111235	3090342	3099295	4111235		Catovirus(50.0%)	8	NA	NA
AXU51036.1|3090342_3092256_-	capsular polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AXU51037.1|3092339_3093431_-	capsular polysaccharide biosynthesis glycosyl transferase	NA	A0A1V0SL50	Klosneuvirus	26.2	2.3e-16
AXU51038.1|3093436_3094732_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	2.2e-90
AXU51039.1|3094757_3095510_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AXU51040.1|3095557_3096466_-	beta-glycosyltransferase	NA	NA	NA	NA	NA
AXU51041.1|3096487_3097237_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AXU51042.1|3097265_3098441_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AXU51043.1|3098455_3099295_-	glycosyl transferase	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 10
CP016104	Clostridioides difficile strain DSM 29629 chromosome, complete genome	4111235	3711379	3765011	4111235	protease	Agrobacterium_phage(22.22%)	52	NA	NA
AXU51528.1|3711379_3712459_-|protease	protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.0	1.1e-15
AXU51529.1|3712614_3713964_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU51530.1|3714228_3715857_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AXU51531.1|3715980_3717585_-	FAD-dependent dehydrogenase	NA	NA	NA	NA	NA
AXU51532.1|3717632_3717950_-	hypothetical protein	NA	NA	NA	NA	NA
AXU51533.1|3717954_3718320_-	hypothetical protein	NA	NA	NA	NA	NA
AXU51534.1|3718400_3719438_-	protein translocase	NA	NA	NA	NA	NA
AXU51535.1|3719690_3720275_-	hypothetical protein	NA	NA	NA	NA	NA
AXU51536.1|3720289_3720733_-	hypothetical protein	NA	NA	NA	NA	NA
AXU51537.1|3720733_3721606_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AXU51538.1|3721659_3722010_-	type IV pilin	NA	NA	NA	NA	NA
AXU51539.1|3722063_3723149_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU51540.1|3723319_3724663_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU51541.1|3724691_3725372_-	membrane protein	NA	NA	NA	NA	NA
AXU51542.1|3725763_3726843_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXU51543.1|3727428_3728799_+	transporter	NA	NA	NA	NA	NA
AXU51544.1|3729063_3729675_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AXU51545.1|3729664_3732028_-|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	44.4	3.1e-175
AXU51546.1|3732207_3732720_+	chromate transport protein	NA	NA	NA	NA	NA
AXU51547.1|3732707_3733235_+	chromate transport protein	NA	NA	NA	NA	NA
AXU51548.1|3733305_3734556_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
AXU51549.1|3734574_3735159_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
AXU51550.1|3735308_3736595_-	trigger factor	NA	NA	NA	NA	NA
AXU51551.1|3736788_3737259_-	phosphoesterase	NA	NA	NA	NA	NA
AXU51552.1|3737258_3738608_-	ribonuclease PH	NA	NA	NA	NA	NA
AXU51553.1|3738767_3740792_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	37.6	6.4e-113
AXU51554.1|3740977_3741916_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AXU51555.1|3742017_3742440_-	hypothetical protein	NA	NA	NA	NA	NA
AXU51556.1|3742627_3743911_+	transporter	NA	NA	NA	NA	NA
AXU51557.1|3743988_3744504_-	electron transport protein	NA	NA	NA	NA	NA
AXU51558.1|3744503_3745880_-	hydrogenase	NA	NA	NA	NA	NA
AXU51559.1|3745904_3746456_-	electron transport protein	NA	NA	NA	NA	NA
AXU51560.1|3746492_3746708_-	hypothetical protein	NA	NA	NA	NA	NA
AXU51561.1|3746676_3747510_-	formate dehydrogenase accessory protein	NA	NA	NA	NA	NA
AXU51562.1|3747558_3749238_-	formate dehydrogenase H	NA	NA	NA	NA	NA
AXU51563.1|3749286_3749703_-	formate dehydrogenase H	NA	NA	NA	NA	NA
AXU51564.1|3749953_3751012_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU51565.1|3751222_3751882_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	34.1	1.4e-29
AXU51566.1|3752192_3752816_+	hypothetical protein	NA	NA	NA	NA	NA
AXU51567.1|3752889_3753723_+	hypothetical protein	NA	NA	NA	NA	NA
AXU51568.1|3753829_3754405_-	hypothetical protein	NA	NA	NA	NA	NA
AXU51569.1|3754697_3754976_-	Mor transcription activator domain-containing protein	NA	NA	NA	NA	NA
AXU51570.1|3755284_3756046_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
AXU51571.1|3756217_3758326_-	exosporium glycoprotein	NA	A0A285PXU9	Cedratvirus	67.3	7.3e-51
AXU51572.1|3758404_3759481_-	glycosyl transferase	NA	A0A1V0SAJ8	Catovirus	25.8	4.6e-17
AXU51573.1|3759792_3760377_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	51.8	2.1e-48
AXU51574.1|3760373_3760856_-	AraC family transcription regulator	NA	NA	NA	NA	NA
AXU51575.1|3761147_3762470_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU51576.1|3762584_3763253_+	B3/4 domain protein	NA	NA	NA	NA	NA
AXU51577.1|3763428_3763947_-	nitroreductase	NA	NA	NA	NA	NA
AXU51578.1|3764098_3764422_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU51579.1|3764426_3765011_-|protease	protease	protease	NA	NA	NA	NA
