The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	284406	300583	4240646		Synechococcus_phage(23.08%)	14	NA	NA
AXU85192.1|284406_284919_-	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	87.6	3.5e-84
AXU85193.1|285368_285845_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AXU85194.1|285850_286549_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AXU85195.1|286560_287928_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AXU85196.1|287921_288998_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	2.2e-64
AXU85197.1|288991_289585_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
AXU85198.1|289577_291110_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AXU85199.1|291120_292371_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXU85200.1|292395_296202_+	formylglycinamidine ribonucleotide synthetase	NA	A6N228	Microbacterium_phage	24.5	1.0e-31
AXU85201.1|296407_297280_+	dtdp-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	2.3e-14
AXU85202.1|297388_298258_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	61.5	4.7e-97
AXU85203.1|298306_298864_+	dtdp-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	1.3e-47
AXU85204.1|298901_299885_+	dtdp-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	46.7	1.9e-78
AXU85205.1|299914_300583_+	transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	4.1e-24
>prophage 2
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	1282568	1338364	4240646	tail,portal,protease,capsid,terminase	Clostridium_phage(81.48%)	71	NA	NA
AXU86051.1|1282568_1283816_+|protease	protease	protease	Q6DW11	Phage_TP	37.6	2.1e-58
AXU86052.1|1283887_1285552_+	penicillin-binding protein	NA	NA	NA	NA	NA
AXU86053.1|1285955_1287473_-	site-specific recombinase	NA	I3VYZ3	Thermoanaerobacterium_phage	49.7	2.4e-128
AXU86054.1|1287597_1288419_-	lipoprotein	NA	NA	NA	NA	NA
AXU86055.1|1288609_1290037_+	cell surface protein	NA	A0A2R2ZGK6	Clostridioides_phage	43.4	2.2e-75
AXU86056.1|1290896_1291115_-	DNA-binding protein	NA	J9QEC2	Clostridium_phage	65.2	3.0e-16
AXU86057.1|1291871_1292048_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86058.1|1292053_1292374_-	DNA-binding protein	NA	A0A0A7RTW0	Clostridium_phage	58.8	7.7e-21
AXU86059.1|1292531_1292756_+	hypothetical protein	NA	A0A0A7S0N3	Clostridium_phage	50.7	1.0e-11
AXU86060.1|1293057_1293384_+	prophage antirepressor	NA	A0A2R2ZGJ4	Clostridioides_phage	83.2	6.0e-45
AXU86061.1|1293493_1294309_+	phage anti-repressor	NA	X5JAW6	Clostridium_phage	69.6	8.3e-96
AXU86062.1|1294361_1294580_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86063.1|1294694_1294856_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	79.1	1.8e-10
AXU86064.1|1295058_1295301_+	hypothetical protein	NA	A0A0A8WFK1	Clostridium_phage	91.2	6.0e-34
AXU86065.1|1295431_1295749_+	putative replication initiation and membrane attachment	NA	A0A090DCV4	Clostridium_phage	58.5	5.1e-25
AXU86066.1|1295757_1296693_+	phage replication protein	NA	B6SBX9	Clostridium_virus	67.4	5.3e-94
AXU86067.1|1296676_1297366_+	ATPase AAA	NA	Q0H276	Geobacillus_phage	42.7	5.0e-41
AXU86068.1|1297370_1298024_+	RNA polymerase factor sigma-70	NA	NA	NA	NA	NA
AXU86069.1|1298101_1299019_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86070.1|1299061_1299541_+	sigma-70 region 4 type 2	NA	I2E8Y5	Clostridium_phage	48.7	5.9e-33
AXU86071.1|1299688_1299892_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86072.1|1299963_1300314_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86073.1|1300379_1300592_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86074.1|1301113_1302133_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86075.1|1302214_1302640_+	phage-like protein	NA	A0A090DCM3	Clostridium_phage	90.6	3.7e-63
AXU86076.1|1302620_1303871_+|terminase	phage terminase large subunit, pbsx family	terminase	A0A0A7RTE7	Clostridium_phage	83.2	1.5e-205
AXU86077.1|1303875_1305315_+|portal	phage portal protein	portal	X5J9Z4	Clostridium_phage	91.2	4.7e-259
AXU86078.1|1305304_1306702_+	phage protein	NA	A0A0A8WJ84	Clostridium_phage	96.1	5.7e-262
AXU86079.1|1306716_1306917_+	hypothetical protein	NA	A0A0A8WJ56	Clostridium_phage	100.0	2.3e-31
AXU86080.1|1306982_1307546_+	phage scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	87.2	2.5e-83
AXU86081.1|1307557_1308457_+|capsid	phage major capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	100.0	2.8e-169
AXU86082.1|1308456_1308690_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	97.4	1.4e-32
AXU86083.1|1308699_1309101_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AXU86084.1|1309094_1309442_+	phage protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AXU86085.1|1309441_1309732_+	phage protein	NA	A0A0A8WFV8	Clostridium_phage	100.0	2.1e-46
AXU86086.1|1309841_1310648_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
AXU86087.1|1310996_1311434_+	phage protein	NA	X5JAB5	Clostridium_phage	92.4	4.8e-74
AXU86088.1|1311417_1311603_+	hypothetical protein	NA	A0A0A8WFD8	Clostridium_phage	87.9	1.4e-19
AXU86089.1|1311603_1312914_+	phage protein	NA	A0A0A8WIF0	Clostridium_phage	92.0	9.3e-230
AXU86090.1|1312930_1313401_+	phage protein	NA	A0A0A8WJ62	Clostridium_phage	89.7	5.5e-76
AXU86091.1|1313471_1313912_+	phage protein	NA	X5JAB6	Clostridium_phage	63.7	1.0e-47
AXU86092.1|1313986_1314106_+	phage protein	NA	NA	NA	NA	NA
AXU86093.1|1314254_1314416_+	hypothetical protein	NA	A0A0A8WFE0	Clostridium_phage	76.5	2.0e-06
AXU86094.1|1315125_1315323_+	hypothetical protein	NA	A0A090EUD7	Clostridium_phage	60.0	1.3e-10
AXU86095.1|1315297_1315663_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86096.1|1316096_1316339_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	56.9	3.2e-11
AXU86097.1|1316459_1317326_+	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	65.4	1.4e-104
AXU86098.1|1317380_1317536_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86099.1|1318126_1318651_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86100.1|1319134_1319956_+	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	73.3	3.2e-87
AXU86101.1|1320018_1320195_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86102.1|1320560_1321334_+	hypothetical protein	NA	X5JB37	Clostridium_phage	36.7	1.0e-34
AXU86103.1|1321400_1323689_+|tail	phage tail tape measure protein	tail	A0A0A8WJT6	Clostridium_phage	78.1	2.9e-279
AXU86104.1|1323704_1324394_+	phage cell wall hydrolase	NA	X5J9Z8	Clostridium_phage	96.5	3.7e-121
AXU86105.1|1324386_1326279_+	phage cell wall hydrolase	NA	A3QSB3	Clostridium_virus	89.8	0.0e+00
AXU86106.1|1326292_1326553_+	phage protein	NA	A0A0A8WJ65	Clostridium_phage	87.2	4.9e-34
AXU86107.1|1326557_1326977_+	phage protein	NA	X5JB38	Clostridium_phage	98.6	1.1e-72
AXU86108.1|1326977_1328027_+	phage protein	NA	A0A0A8WFK0	Clostridium_phage	94.6	3.6e-184
AXU86109.1|1328019_1328637_+	phage protein	NA	A0A0A8WFE8	Clostridium_phage	98.0	1.0e-114
AXU86110.1|1328648_1329425_+|tail	phage tail fiber protein	tail	X5JAJ4	Clostridium_phage	74.7	2.5e-97
AXU86111.1|1329440_1330901_+	hypothetical protein	NA	J9QE87	Clostridium_phage	54.1	1.7e-99
AXU86112.1|1330916_1331264_+	hypothetical protein	NA	A3QSB8	Clostridium_virus	81.7	2.2e-45
AXU86113.1|1331275_1331446_+	hypothetical protein	NA	A0A0A8WEI9	Clostridium_phage	68.0	4.5e-12
AXU86114.1|1331581_1333357_+	Glycine rich protein	NA	A0A0A8WI57	Clostridium_phage	60.9	5.1e-130
AXU86115.1|1333460_1333751_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	96.9	2.0e-44
AXU86116.1|1333754_1334012_+	phage membrane protein	NA	A0A0K2SUI8	Clostridium_phage	85.9	1.6e-37
AXU86117.1|1334011_1334818_+	phage-related cell wall hydrolase	NA	A0A0A8WE15	Clostridium_phage	95.1	9.0e-151
AXU86118.1|1335070_1336330_+	ABC transporter	NA	C7BGE8	Burkholderia_phage	27.3	3.6e-37
AXU86119.1|1336326_1337085_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86120.1|1337157_1337646_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86121.1|1337980_1338364_-	hypothetical protein	NA	A0A1V0E007	Clostridioides_phage	73.2	2.3e-43
>prophage 3
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	1466452	1484281	4240646	tail	Clostridium_phage(52.63%)	25	NA	NA
AXU86241.1|1466452_1466653_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AXU86242.1|1467073_1467502_+	regulatory protein	NA	NA	NA	NA	NA
AXU86243.1|1467644_1468400_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
AXU86244.1|1468520_1468937_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86245.1|1469100_1469607_-	phage protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AXU86246.1|1469688_1470009_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AXU86247.1|1470177_1470375_+	phage regulatory protein	NA	NA	NA	NA	NA
AXU86248.1|1470479_1470920_+	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
AXU86249.1|1471168_1471612_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	35.4	1.3e-18
AXU86250.1|1471616_1472681_+	phage-like element pbsx protein xkdK	NA	A0A1V0DZX4	Clostridioides_phage	53.7	1.6e-99
AXU86251.1|1472694_1473123_+	phage-like element pbsx protein XkdM	NA	A0A1V0DZX1	Clostridioides_phage	51.8	4.8e-34
AXU86252.1|1473236_1473683_+	Phage XkdN-like protein	NA	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
AXU86253.1|1473876_1476207_+	phage protein	NA	A0A1V0DZX3	Clostridioides_phage	59.7	1.7e-16
AXU86254.1|1476206_1476629_+	phage-like element pbsx protein xkdP	NA	A0A1V0DZX0	Clostridioides_phage	65.0	9.4e-51
AXU86255.1|1476897_1478415_+	phage cell wall hydrolase	NA	A0A0A8WF62	Clostridium_phage	83.4	2.5e-247
AXU86256.1|1478428_1478755_+	hypothetical protein	NA	J9QE86	Clostridium_phage	57.4	1.3e-31
AXU86257.1|1478754_1479186_+	phage protein	NA	A0A0K2SUB3	Clostridium_phage	82.3	9.3e-62
AXU86258.1|1479178_1480228_+	phage protein	NA	J9QDY7	Clostridium_phage	67.4	1.2e-131
AXU86259.1|1480227_1480845_+	phage protein	NA	J9QD29	Clostridium_phage	63.9	4.1e-71
AXU86260.1|1480846_1481659_+|tail	phage tail fiber protein	tail	A0A0A8WES5	Clostridium_phage	62.6	1.6e-75
AXU86261.1|1481814_1482270_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86262.1|1482497_1482917_-	phage regulatory protein	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AXU86263.1|1483215_1483425_+	phage regulatory protein	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AXU86264.1|1483456_1483666_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86265.1|1483882_1484281_-	phage regulatory protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 4
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	1566252	1575979	4240646		Pandoravirus(37.5%)	11	NA	NA
AXU86334.1|1566252_1566837_+	para-aminobenzoate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	1.4e-57
AXU86335.1|1566838_1568188_+	para-aminobenzoate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.2e-37
AXU86336.1|1568177_1568921_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AXU86337.1|1568954_1569656_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86338.1|1569681_1570254_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AXU86339.1|1570317_1571109_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.8	3.7e-24
AXU86340.1|1571119_1571485_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXU86341.1|1571477_1571984_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	S4VNV0	Pandoravirus	35.2	2.7e-12
AXU86342.1|1571964_1572750_+	chorismate biosynthesis-like protein	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
AXU86343.1|1573004_1574795_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AXU86344.1|1574812_1575979_+	RNA polymerase sigma factor (sigma-43)	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 5
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	1710909	1725231	4240646		Streptococcus_phage(91.67%)	18	NA	NA
AXU86465.1|1710909_1711821_-	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	52.1	4.1e-83
AXU86466.1|1711837_1712845_-	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	68.8	3.1e-132
AXU86467.1|1712841_1715052_-	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	59.9	1.6e-186
AXU86468.1|1715051_1717502_-	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	76.1	0.0e+00
AXU86469.1|1717479_1717878_-	conjugative transposon protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	4.1e-48
AXU86470.1|1717987_1718491_-	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	60.8	7.5e-55
AXU86471.1|1718508_1718991_-	conjugative tansposon protein	NA	NA	NA	NA	NA
AXU86472.1|1718930_1719227_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86473.1|1719327_1719801_-	N-acetyltransferase GCN5	NA	NA	NA	NA	NA
AXU86474.1|1719877_1720099_-	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
AXU86475.1|1720099_1720234_-	conjugative transposon protein	NA	NA	NA	NA	NA
AXU86476.1|1720245_1721442_-	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	62.8	4.3e-149
AXU86477.1|1721686_1722103_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86478.1|1722106_1723489_-	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	66.7	2.0e-174
AXU86479.1|1723589_1723916_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86480.1|1723931_1724339_-	DNA-binding protein	NA	A0A0A7AQV8	Bacillus_phage	42.3	2.6e-05
AXU86481.1|1724505_1724889_-	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	55.9	2.3e-32
AXU86482.1|1724904_1725231_-	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	2.0e-24
>prophage 6
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	2007149	2027757	4240646		Streptococcus_phage(84.62%)	20	NA	NA
AXU86739.1|2007149_2007563_+	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-40
AXU86740.1|2007643_2008102_+	glyoxalase/bleomycin resistance protein/dioxygenase	NA	NA	NA	NA	NA
AXU86741.1|2008165_2008579_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86742.1|2008633_2009236_+	hydrolase	NA	NA	NA	NA	NA
AXU86743.1|2009296_2009839_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86744.1|2009835_2010402_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86745.1|2010512_2011907_+	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	65.5	8.2e-176
AXU86746.1|2012174_2013287_+	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	63.7	6.4e-139
AXU86747.1|2013438_2013660_+	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	84.9	4.5e-28
AXU86748.1|2013958_2014456_+	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	42.7	1.0e-27
AXU86749.1|2014471_2014975_+	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	57.9	1.2e-52
AXU86750.1|2015464_2017915_+	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	76.3	0.0e+00
AXU86751.1|2017915_2020087_+	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	58.1	8.8e-177
AXU86752.1|2020083_2020515_+	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	60.4	1.1e-35
AXU86753.1|2021282_2023058_+	group II intron reverse transcriptase/mutarase	NA	A0A0U4J920	Pseudomonas_phage	27.9	1.8e-34
AXU86754.1|2023258_2023750_+	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	78.5	1.1e-77
AXU86755.1|2023766_2024669_+	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	51.8	6.9e-83
AXU86756.1|2024842_2025211_+	hypothetical protein	NA	NA	NA	NA	NA
AXU86757.1|2025366_2025957_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU86758.1|2025984_2027757_+	ABC transporter	NA	W8CYL7	Bacillus_phage	28.7	3.7e-40
>prophage 7
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	2239728	2259923	4240646	integrase	Streptococcus_phage(100.0%)	25	2230282:2230301	2252638:2252657
2230282:2230301	attL	CATACAACTATTCTTTCCTA	NA	NA	NA	NA
AXU86956.1|2239728_2240997_-|integrase	integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.3	1.5e-155
AXU86957.1|2240996_2241200_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	2.5e-25
AXU86958.1|2241574_2241814_-	conjugative transposon excisionase	NA	NA	NA	NA	NA
AXU86959.1|2241806_2242487_-	conjugative transposon protein	NA	A0A1S5SEW0	Streptococcus_phage	43.1	3.9e-22
AXU86960.1|2242514_2242739_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86961.1|2242770_2243196_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86962.1|2243594_2243858_+	plasmid protein	NA	A0A1X9I6D5	Streptococcus_phage	83.1	4.4e-22
AXU86963.1|2244086_2244824_+	rRNA adenine N-6-methyltransferase	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
AXU86964.1|2245431_2245848_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86965.1|2245844_2246048_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXU86966.1|2246148_2247060_-	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	53.6	2.2e-84
AXU86967.1|2247077_2248085_-	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	67.6	6.4e-130
AXU86968.1|2248081_2250286_-	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	51.1	1.6e-181
AXU86969.1|2250285_2252736_-	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	76.4	0.0e+00
2252638:2252657	attR	TAGGAAAGAATAGTTGTATG	NA	NA	NA	NA
AXU86970.1|2252713_2253112_-	conjugative transposon protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	4.1e-48
AXU86971.1|2253228_2253732_-	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	60.8	7.5e-55
AXU86972.1|2253749_2254253_-	conjugative tansposon protein	NA	NA	NA	NA	NA
AXU86973.1|2254577_2255198_-	hypothetical protein	NA	NA	NA	NA	NA
AXU86974.1|2255287_2255509_-	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
AXU86975.1|2255509_2255644_-	conjugative transposon protein	NA	NA	NA	NA	NA
AXU86976.1|2255656_2256853_-	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	62.3	4.7e-148
AXU86977.1|2257036_2258431_-	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	66.4	2.3e-178
AXU86978.1|2258514_2259117_-	DNA-binding SAP domain-containing protein	NA	NA	NA	NA	NA
AXU86979.1|2259197_2259581_-	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	55.1	4.4e-31
AXU86980.1|2259596_2259923_-	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	1.1e-25
>prophage 8
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	2568573	2574852	4240646	transposase	Clostridium_phage(71.43%)	10	NA	NA
AXU87245.1|2568573_2569026_-	prophage antirepressor-related protein	NA	X5JAW1	Clostridium_phage	89.9	1.5e-70
AXU87246.1|2569022_2569388_-	phage-related regulatory protein	NA	A0A2R2ZGW3	Clostridioides_phage	66.7	1.2e-38
AXU87247.1|2569507_2569660_-	hypothetical protein	NA	X5JAJ2	Clostridium_phage	59.2	1.6e-05
AXU87248.1|2570642_2571527_-	hypothetical protein	NA	NA	NA	NA	NA
AXU87249.1|2571720_2571873_-	hypothetical protein	NA	J9QED5	Clostridium_phage	52.0	9.6e-06
AXU87250.1|2572146_2572479_-	hypothetical protein	NA	NA	NA	NA	NA
AXU87251.1|2572505_2572760_-	hypothetical protein	NA	NA	NA	NA	NA
AXU87252.1|2573191_2573485_-|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	62.8	3.6e-33
AXU87253.1|2574181_2574373_-	repressor	NA	A0A0A8WFF9	Clostridium_phage	70.5	6.4e-15
AXU87254.1|2574477_2574852_-	regulatory protein	NA	A0A0A8WJU1	Clostridium_phage	88.0	7.1e-50
>prophage 9
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	3127211	3136164	4240646		Catovirus(50.0%)	8	NA	NA
AXU87725.1|3127211_3129125_-	capsular polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AXU87726.1|3129208_3130300_-	capsular polysaccharide biosynthesis glycosyl transferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
AXU87727.1|3130305_3131601_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	2.9e-90
AXU87728.1|3131626_3132379_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AXU87729.1|3132426_3133335_-	beta-glycosyltransferase	NA	NA	NA	NA	NA
AXU87730.1|3133356_3134106_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AXU87731.1|3134134_3135310_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AXU87732.1|3135324_3136164_-	glycosyl transferase	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 10
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	3495822	3519902	4240646	integrase	Streptococcus_phage(86.96%)	34	3491246:3491261	3520554:3520569
3491246:3491261	attL	TATTATTCTAGGTAAT	NA	NA	NA	NA
AXU88017.1|3495822_3496149_+	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	2.0e-24
AXU88018.1|3496164_3496548_+	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	57.6	5.2e-32
AXU88019.1|3496715_3497123_+	DNA-binding protein	NA	A0A0A7AQV8	Bacillus_phage	42.3	1.2e-05
AXU88020.1|3497138_3497465_+	hypothetical protein	NA	NA	NA	NA	NA
AXU88021.1|3497565_3498960_+	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	66.2	1.9e-177
AXU88022.1|3499143_3500340_+	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	62.5	7.3e-149
AXU88023.1|3500352_3500487_+	conjugative transposon protein	NA	NA	NA	NA	NA
AXU88024.1|3500487_3500709_+	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
AXU88025.1|3500912_3501689_+	Xre family transcriptional regulator	NA	W6LMS6	Streptococcus_phage	46.6	4.9e-05
AXU88026.1|3501773_3502070_+	hypothetical protein	NA	NA	NA	NA	NA
AXU88027.1|3502009_3502492_+	conjugative tansposon protein	NA	NA	NA	NA	NA
AXU88028.1|3502509_3503013_+	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	61.4	3.4e-55
AXU88029.1|3503130_3503529_+	conjugative transposon protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
AXU88030.1|3503506_3505957_+	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	76.1	0.0e+00
AXU88031.1|3505956_3508152_+	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	68.6	4.4e-176
AXU88032.1|3508148_3509156_+	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	69.9	3.0e-135
AXU88033.1|3509171_3510083_+	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	52.8	1.2e-82
AXU88034.1|3510203_3510581_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU88035.1|3510581_3511445_+	transporter	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	3.3e-18
AXU88036.1|3511441_3512086_+	ABC transporter permease	NA	NA	NA	NA	NA
AXU88037.1|3512098_3512290_+	hypothetical protein	NA	NA	NA	NA	NA
AXU88038.1|3512494_3512683_+	conjugative transposon protein	NA	D0R0F6	Streptococcus_phage	57.9	8.2e-15
AXU88039.1|3512790_3513150_-	transposon-related DNA-binding protein	NA	A0A1S5SFA6	Streptococcus_phage	45.0	2.3e-21
AXU88040.1|3513342_3513552_+	Omega Transcriptional Repressor	NA	A0A1X9I6D5	Streptococcus_phage	100.0	6.3e-32
AXU88041.1|3513568_3513841_+	Antitoxin epsilon	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
AXU88042.1|3513842_3514001_+	UDP-N-acetylglucosamine kinase	NA	NA	NA	NA	NA
AXU88043.1|3514052_3514472_+	plasmid protein	NA	NA	NA	NA	NA
AXU88044.1|3514518_3515256_+	rRNA adenine N-6-methyltransferase	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
AXU88045.1|3515260_3515392_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	90.7	8.2e-14
AXU88046.1|3515788_3516667_+	plasmid replication protein	NA	A0A1X9I765	Streptococcus_phage	97.8	1.2e-148
AXU88047.1|3517114_3517531_+	conjugative transposon protein	NA	A0A1S5SEW0	Streptococcus_phage	38.0	3.8e-20
AXU88048.1|3517537_3517786_+	conjugative transposon excisionase	NA	NA	NA	NA	NA
AXU88049.1|3518180_3518438_+	excisionase	NA	NA	NA	NA	NA
AXU88050.1|3518456_3519902_+|integrase	integrase	integrase	A0A0A8WIF9	Clostridium_phage	23.9	3.5e-12
3520554:3520569	attR	TATTATTCTAGGTAAT	NA	NA	NA	NA
>prophage 11
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	3758994	3819145	4240646	protease	Agrobacterium_phage(15.38%)	57	NA	NA
AXU88243.1|3758994_3760074_-|protease	protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.7	3.3e-15
AXU88244.1|3760229_3761579_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU88245.1|3761843_3763472_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AXU88246.1|3763595_3765200_-	FAD-dependent dehydrogenase	NA	NA	NA	NA	NA
AXU88247.1|3765247_3765565_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88248.1|3765569_3765935_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88249.1|3766015_3767053_-	protein translocase	NA	NA	NA	NA	NA
AXU88250.1|3767305_3767890_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88251.1|3767904_3768348_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88252.1|3768348_3769221_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AXU88253.1|3769273_3769633_-	type IV pilin	NA	NA	NA	NA	NA
AXU88254.1|3769686_3770772_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU88255.1|3770942_3772292_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU88256.1|3772314_3772995_-	membrane protein	NA	NA	NA	NA	NA
AXU88257.1|3773385_3774465_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXU88258.1|3775042_3776413_+	transporter	NA	NA	NA	NA	NA
AXU88259.1|3776677_3777289_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AXU88260.1|3777278_3779642_-|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	44.4	4.0e-175
AXU88261.1|3779821_3780334_+	chromate transport protein	NA	NA	NA	NA	NA
AXU88262.1|3780321_3780849_+	chromate transport protein	NA	NA	NA	NA	NA
AXU88263.1|3780919_3782170_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
AXU88264.1|3782188_3782773_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	58.8	2.5e-57
AXU88265.1|3782922_3784209_-	trigger factor	NA	NA	NA	NA	NA
AXU88266.1|3784402_3784873_-	phosphoesterase	NA	NA	NA	NA	NA
AXU88267.1|3784872_3786222_-	ribonuclease PH	NA	NA	NA	NA	NA
AXU88268.1|3786381_3788406_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	37.6	3.8e-113
AXU88269.1|3788591_3789530_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AXU88270.1|3789631_3790054_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88271.1|3790241_3791525_+	transporter	NA	NA	NA	NA	NA
AXU88272.1|3791602_3792118_-	electron transport protein	NA	NA	NA	NA	NA
AXU88273.1|3792117_3793494_-	hydrogenase	NA	NA	NA	NA	NA
AXU88274.1|3793518_3794070_-	electron transport protein	NA	NA	NA	NA	NA
AXU88275.1|3794106_3794322_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88276.1|3794290_3795124_-	formate dehydrogenase accessory protein	NA	NA	NA	NA	NA
AXU88277.1|3797567_3798626_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU88278.1|3798836_3799496_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	33.6	4.2e-29
AXU88279.1|3799806_3800436_+	hypothetical protein	NA	NA	NA	NA	NA
AXU88280.1|3800462_3801101_+	hypothetical protein	NA	NA	NA	NA	NA
AXU88281.1|3801196_3801985_-	ABC-2 family transporter protein	NA	NA	NA	NA	NA
AXU88282.1|3801985_3802858_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	3.0e-27
AXU88283.1|3804145_3804520_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88284.1|3805030_3805354_-	accessory genes regulator	NA	X5JB40	Clostridium_phage	35.8	1.9e-11
AXU88285.1|3805412_3805553_-	autoinducer prepeptide	NA	NA	NA	NA	NA
AXU88286.1|3805564_3806881_-	sensor histidine kinase VirS	NA	X5JAC0	Clostridium_phage	33.2	3.4e-54
AXU88287.1|3806874_3807585_-	LytR family DNA-binding response regulator	NA	A0A2R2ZGH8	Clostridioides_phage	36.2	2.2e-28
AXU88288.1|3808023_3808599_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88289.1|3808891_3809170_-	Mor transcription activator domain-containing protein	NA	NA	NA	NA	NA
AXU88290.1|3809478_3810240_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
AXU88291.1|3810408_3812460_-	exosporium glycoprotein	NA	A0A285PXU9	Cedratvirus	67.9	2.2e-52
AXU88292.1|3812538_3813615_-	glycosyl transferase	NA	A0A1V0SAJ8	Catovirus	25.3	1.3e-16
AXU88293.1|3813926_3814511_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	51.3	3.6e-48
AXU88294.1|3814507_3814990_-	AraC family transcription regulator	NA	NA	NA	NA	NA
AXU88295.1|3815188_3816604_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXU88296.1|3816718_3817387_+	B3/4 domain protein	NA	NA	NA	NA	NA
AXU88297.1|3817562_3818081_-	nitroreductase	NA	NA	NA	NA	NA
AXU88298.1|3818232_3818556_+	transcriptional regulator	NA	NA	NA	NA	NA
AXU88299.1|3818560_3819145_-|protease	protease	protease	NA	NA	NA	NA
>prophage 12
CP019857	Clostridioides difficile strain DSM 29745 chromosome, complete genome	4240646	3892969	3915130	4240646		Streptococcus_phage(71.43%)	19	NA	NA
AXU88357.1|3892969_3895735_-	magnesium transporting ATPase, P-type	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	25.6	5.8e-48
AXU88358.1|3895900_3896212_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88359.1|3896458_3897136_-	magnesium transporting ATPase protein C	NA	G3MA03	Bacillus_virus	36.0	3.3e-13
AXU88360.1|3897273_3897777_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU88361.1|3897792_3900456_-	magnesium transporting ATPase, P-type 1	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	24.8	1.5e-37
AXU88362.1|3901242_3902145_-	conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	52.3	8.4e-81
AXU88363.1|3902160_3903174_-	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	69.3	3.7e-133
AXU88364.1|3903170_3905375_-	conjugative transposon protein	NA	A0A1S5SF30	Streptococcus_phage	51.4	9.3e-182
AXU88365.1|3905374_3907825_-	conjugative transposon protein	NA	A0A1S5SF64	Streptococcus_phage	76.2	0.0e+00
AXU88366.1|3908318_3908822_-	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	60.2	4.4e-55
AXU88367.1|3908839_3909343_-	conjugative tansposon protein	NA	NA	NA	NA	NA
AXU88368.1|3909640_3910282_-	chloramphenicol o-acetyltransferase	NA	G3CFL0	Escherichia_phage	33.3	1.2e-33
AXU88369.1|3910489_3910711_-	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
AXU88370.1|3910711_3910846_-	conjugative transposon protein	NA	NA	NA	NA	NA
AXU88371.1|3910858_3912055_-	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	62.3	1.1e-147
AXU88372.1|3912238_3913633_-	conjugative transposon FtsK/SpoIIIE-like protein	NA	A0A1S5SFB5	Streptococcus_phage	66.6	4.6e-179
AXU88373.1|3913699_3914314_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88374.1|3914404_3914788_-	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	55.9	2.3e-32
AXU88375.1|3914803_3915130_-	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.4e-25
