The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	4071596	208122	293491	4071596	coat,protease,transposase	Geobacillus_virus(11.54%)	73	NA	NA
AXU88835.1|208122_208839_+|protease	glycoprotease	protease	NA	NA	NA	NA
AXU88836.1|208828_209305_+	ribosomal-protein-alanine acetyltransferase	NA	NA	NA	NA	NA
AXU88837.1|209310_210327_+	DNA-binding/iron metalloprotein/AP endonuclease	NA	A0A0R6PI74	Moraxella_phage	43.2	2.0e-70
AXU88838.1|210623_213332_+	4-hydroxyphenylacetate decarboxylase, catalytic subunit	NA	NA	NA	NA	NA
AXU88839.1|213335_213593_+	4-hydroxyphenylacetate decarboxylase, regulatory subunit	NA	NA	NA	NA	NA
AXU88840.1|213585_214536_+	4-hydroxyphenylacetate decarboxylase activating subunit	NA	NA	NA	NA	NA
AXU88841.1|214899_215871_-|protease	membrane-associated caaX amino terminal protease	protease	NA	NA	NA	NA
AXU88842.1|216705_217173_+	glyoxalase	NA	NA	NA	NA	NA
AXU88843.1|218664_219318_+	cyclic nucleotide-binding protein	NA	NA	NA	NA	NA
AXU88844.1|219457_220834_-	drug/sodium antiporter	NA	NA	NA	NA	NA
AXU88845.1|220849_222763_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	32.2	7.5e-63
AXU88846.1|222898_223531_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
AXU88847.1|223678_224209_+	formylmethanofuran dehydrogenase subunit E	NA	NA	NA	NA	NA
AXU88848.1|224374_224545_-	ferredoxin	NA	NA	NA	NA	NA
AXU88849.1|224829_225897_+	lipoprotein	NA	NA	NA	NA	NA
AXU88850.1|226066_227968_+	oxidoreductase, acetyl-CoA synthase subunit	NA	NA	NA	NA	NA
AXU88851.1|227948_228434_+	oxidoreductase, electron transfer subunit	NA	NA	NA	NA	NA
AXU88852.1|228408_229635_+	oxidoreductase, NAD/FAD binding subunit	NA	NA	NA	NA	NA
AXU88853.1|229787_230975_-	cyclopropane-fatty-acyl-phospholipid synthase	NA	A0A2I2L5L3	Orpheovirus	33.8	5.5e-48
AXU88854.1|231247_231346_+	ATP-binding protein	NA	NA	NA	NA	NA
AXU88855.1|232090_233200_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	52.7	5.3e-109
AXU88856.1|233497_234046_+	ATP-binding protein	NA	NA	NA	NA	NA
AXU88857.1|234173_235439_+	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AXU88858.1|235939_237079_+|protease	membrane-associated metalloprotease	protease	NA	NA	NA	NA
AXU88859.1|237537_238560_+	cell wall hydrolase	NA	A0A0A8WF62	Clostridium_phage	55.0	3.3e-33
AXU88860.1|238854_239775_+	aspartate carbamoyltransferase catalytic chain	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	42.2	2.7e-58
AXU88861.1|239813_240506_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
AXU88862.1|240498_241401_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA	NA
AXU88863.1|241485_242070_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	28.1	2.2e-05
AXU88864.1|242286_243213_+	ketopantoate reductase	NA	NA	NA	NA	NA
AXU88865.1|243263_244154_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXU88866.1|244341_245373_+	membrane protein	NA	NA	NA	NA	NA
AXU88867.1|245666_246542_+	DNA glycosylase	NA	NA	NA	NA	NA
AXU88868.1|246559_248050_+	cardiolipin synthetase	NA	NA	NA	NA	NA
AXU88869.1|248242_248527_+	10 kDa chaperonin	NA	A0A221S4A8	uncultured_virus	42.6	1.4e-13
AXU88870.1|248559_250188_+	60 kDa chaperonin	NA	A0A240F779	uncultured_virus	55.7	2.6e-157
AXU88871.1|250449_251190_+	NCAIR mutase-like protein	NA	A0A288TYA6	Enterococcus_phage	44.8	3.0e-20
AXU88872.1|251273_252008_+	hypothetical protein	NA	NA	NA	NA	NA
AXU88873.1|252037_252457_+	hypothetical protein	NA	NA	NA	NA	NA
AXU88874.1|252838_254374_+	GMP synthase	NA	A0A1V0SH76	Hokovirus	33.2	1.0e-22
AXU88875.1|254719_255130_+	hypothetical protein	NA	NA	NA	NA	NA
AXU88876.1|255593_256166_-	pseudaminic acid biosynthesis N-acetyl transferase	NA	NA	NA	NA	NA
AXU88877.1|256626_256833_+	membrane-associated nucleotidase	NA	NA	NA	NA	NA
AXU88878.1|257577_258687_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	53.0	8.1e-110
AXU88879.1|258828_259992_+	membrane-associated nucleotidase	NA	NA	NA	NA	NA
AXU88880.1|260139_261015_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXU88881.1|261134_261698_+	chromate transport protein ChrA	NA	NA	NA	NA	NA
AXU88882.1|261694_262261_+	chromate transporter	NA	NA	NA	NA	NA
AXU88883.1|262389_263223_-	Alpha/beta hydrolase family protein	NA	NA	NA	NA	NA
AXU88884.1|263407_266836_-	DNA repair protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	37.6	2.8e-177
AXU88885.1|267484_269713_+	signaling protein	NA	NA	NA	NA	NA
AXU88886.1|269977_272008_+	transcription antiterminator	NA	NA	NA	NA	NA
AXU88887.1|272004_272457_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
AXU88888.1|272458_273514_+	fructose-like permease EIIC subunit 2	NA	NA	NA	NA	NA
AXU88889.1|273584_273893_+	PTS system fructose-like transporter subunit EIIB	NA	NA	NA	NA	NA
AXU88890.1|273996_275262_+	sugar-phosphate kinase	NA	NA	NA	NA	NA
AXU88891.1|275349_276063_+	hydrolase	NA	NA	NA	NA	NA
AXU88892.1|276244_276538_-|coat	spore coat protein	coat	NA	NA	NA	NA
AXU88893.1|276543_276759_-	hypothetical protein	NA	NA	NA	NA	NA
AXU88894.1|277308_277821_-	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	87.6	1.7e-83
AXU88895.1|278270_278747_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	3.1e-26
AXU88896.1|278752_279451_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AXU88897.1|279462_280830_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	1.2e-49
AXU88898.1|280823_281900_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	42.8	2.9e-64
AXU88899.1|281893_282487_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.9	3.6e-24
AXU88900.1|282479_284012_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AXU88901.1|284022_285273_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AXU88902.1|285297_289104_+	formylglycinamidine ribonucleotide synthetase	NA	A6N228	Microbacterium_phage	24.1	1.2e-30
AXU88903.1|289307_290180_+	dtdp-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	29.0	3.3e-13
AXU88904.1|290288_291158_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	61.5	6.2e-97
AXU88905.1|291206_291764_+	dtdp-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	7.5e-48
AXU88906.1|291801_292785_+	dtdp-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.1	3.8e-79
AXU88907.1|292822_293491_+	transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	4.1e-24
>prophage 2
CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	4071596	490957	496073	4071596	transposase	Clostridioides_phage(85.71%)	7	NA	NA
AXU89078.1|490957_491500_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	95.6	7.3e-88
AXU89079.1|491492_492197_+	hypothetical protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.9	6.5e-89
AXU89080.1|492267_492489_+	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	46.6	6.5e-11
AXU89081.1|492945_493080_+	hypothetical protein	NA	A0A1V0DZZ0	Clostridioides_phage	73.3	8.4e-06
AXU89082.1|493349_493538_-	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	95.2	1.5e-21
AXU89083.1|493563_493998_-	regulatory protein	NA	A0A1V0E025	Clostridioides_phage	95.1	1.9e-70
AXU89084.1|495608_496073_+|transposase	transposase-like protein b	transposase	A0A0H3UZC2	Geobacillus_virus	63.8	6.1e-51
>prophage 3
CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	4071596	592464	662268	4071596	coat,tRNA,transposase	Streptococcus_phage(25.0%)	60	NA	NA
AXU89167.1|592464_593574_+|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	53.0	6.2e-110
AXU89168.1|593772_594468_+	outer membrane lipoprotein	NA	NA	NA	NA	NA
AXU89169.1|594622_595384_+	hypothetical protein	NA	NA	NA	NA	NA
AXU89170.1|595386_596205_+	sporulation protein YtxC	NA	NA	NA	NA	NA
AXU89171.1|596383_596986_+	putative membrane protein	NA	NA	NA	NA	NA
AXU89172.1|597778_599698_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.8e-144
AXU89173.1|600422_601514_+|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
AXU89174.1|601861_602059_-	transcriptional regulator, PadR-like family	NA	NA	NA	NA	NA
AXU89175.1|602418_603759_+	two-component sensor histidine kinase	NA	X5JAC0	Clostridium_phage	39.7	1.4e-79
AXU89176.1|604100_604670_-	putative HD superfamily hydrolase	NA	NA	NA	NA	NA
AXU89177.1|604830_606081_-	efflux protein	NA	NA	NA	NA	NA
AXU89178.1|606089_606323_-	hypothetical protein	NA	NA	NA	NA	NA
AXU89179.1|606373_606952_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU89180.1|607252_608713_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AXU89181.1|609081_609687_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU89182.1|609689_612257_+	PEP-utilizing kinase	NA	A0A1V0SGR7	Hokovirus	39.2	3.5e-47
AXU89183.1|612516_614601_-	signaling protein	NA	G3MA91	Bacillus_virus	26.6	2.9e-07
AXU89184.1|614648_615878_-	signaling protein	NA	NA	NA	NA	NA
AXU89185.1|615879_617061_-	signaling protein	NA	G3MA91	Bacillus_virus	26.0	6.6e-09
AXU89186.1|618187_618463_+	hypothetical protein	NA	NA	NA	NA	NA
AXU89187.1|618482_618770_+	hypothetical protein	NA	NA	NA	NA	NA
AXU89188.1|619189_621706_+	hypothetical protein	NA	NA	NA	NA	NA
AXU89189.1|621720_626931_+	hypothetical protein	NA	NA	NA	NA	NA
AXU89190.1|627828_628017_+	hypothetical protein	NA	NA	NA	NA	NA
AXU89191.1|628186_628627_-	hypothetical protein	NA	NA	NA	NA	NA
AXU89192.1|628961_630275_+	putative phosphoadenosine phosphosulfate sulfotransferase	NA	A0A220GKF8	Streptococcus_phage	41.5	3.3e-94
AXU89193.1|630292_630829_+	ParB-like nuclease domain protein	NA	A0A220GKT8	Streptococcus_phage	69.7	2.1e-63
AXU89194.1|631326_631548_+|coat	Spore coat associated protein JA (CotJA)	coat	NA	NA	NA	NA
AXU89195.1|631547_631811_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU89196.1|631874_632447_+|coat	spore-coat protein	coat	NA	NA	NA	NA
AXU89197.1|633238_633892_+	methylated-DNA--protein-cysteine methyltransferase	NA	NA	NA	NA	NA
AXU89198.1|634053_634587_+	methylated-DNA--protein-cysteine methyltransferase 1	NA	M1PFU9	Streptococcus_phage	49.4	5.9e-34
AXU89199.1|635140_635926_-	hypothetical protein	NA	NA	NA	NA	NA
AXU89200.1|636389_636803_+	hypothetical protein	NA	NA	NA	NA	NA
AXU89201.1|636876_637413_+	glutamate-rich protein GrpB	NA	NA	NA	NA	NA
AXU89202.1|637573_639148_+	Voltage gated chloride channel family protein	NA	NA	NA	NA	NA
AXU89203.1|639836_640409_-	urea carboxylase	NA	NA	NA	NA	NA
AXU89204.1|640812_641382_+	glutamate-rich protein GrpB	NA	NA	NA	NA	NA
AXU89205.1|641718_642921_-	two-component sensor histidine kinase	NA	X5JAC0	Clostridium_phage	23.7	1.7e-12
AXU89206.1|643286_643463_-	hypothetical protein	NA	NA	NA	NA	NA
AXU89207.1|643566_644148_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AXU89208.1|644270_645095_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXU89209.1|645260_646154_-	hypothetical protein	NA	NA	NA	NA	NA
AXU89210.1|646407_646845_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU89211.1|647255_647495_-	hypothetical protein	NA	NA	NA	NA	NA
AXU89212.1|647819_648041_-	hypothetical protein	NA	NA	NA	NA	NA
AXU89213.1|648619_648877_+	phage-related regulatory protein	NA	NA	NA	NA	NA
AXU89214.1|649324_650563_+	phage-related regulatory protein	NA	A0A1V0E018	Clostridioides_phage	40.6	3.8e-15
AXU89215.1|651031_652333_+	phage-related replicative helicase	NA	A0A218KST2	Xenohaliotis_phage	29.3	6.3e-21
AXU89216.1|652408_652684_+	phage positive regulator of late transcription	NA	NA	NA	NA	NA
AXU89217.1|653741_653972_+	ferredoxin	NA	NA	NA	NA	NA
AXU89218.1|653964_654546_+	4Fe-4S ferredoxin	NA	NA	NA	NA	NA
AXU89219.1|655119_655797_-	transcriptional regulator	NA	NA	NA	NA	NA
AXU89220.1|656071_656200_-	drug/sodium antiporter	NA	NA	NA	NA	NA
AXU89221.1|656327_656849_+	HTH containing transcriptional regulator	NA	NA	NA	NA	NA
AXU89222.1|657231_658029_+	hydrolase	NA	NA	NA	NA	NA
AXU89223.1|658408_659299_+	radical SAM superfamily protein	NA	NA	NA	NA	NA
AXU89224.1|660012_660456_+	acetyltransferase	NA	NA	NA	NA	NA
AXU89225.1|660627_660798_+	hypothetical protein	NA	NA	NA	NA	NA
AXU89226.1|661170_662268_+|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	4071596	1375724	1400097	4071596	tail	Clostridium_phage(54.55%)	28	NA	NA
AXU89854.1|1375724_1375925_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AXU89855.1|1376345_1376774_+	regulatory protein	NA	NA	NA	NA	NA
AXU89856.1|1376916_1377672_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
AXU89857.1|1377792_1378209_-	hypothetical protein	NA	NA	NA	NA	NA
AXU89858.1|1378372_1378879_-	phage protein	NA	A0A0A8WEK1	Clostridium_phage	67.7	1.1e-56
AXU89859.1|1378960_1379281_-	phage repressor	NA	A0A0A8WE28	Clostridium_phage	55.5	9.7e-24
AXU89860.1|1379449_1379647_+	phage regulatory protein	NA	NA	NA	NA	NA
AXU89861.1|1379750_1380191_+	DNA-binding protein	NA	A0A090EUN5	Clostridium_phage	47.9	1.1e-28
AXU89862.1|1380439_1380883_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	2.0e-19
AXU89863.1|1380887_1381952_+	phage-like element pbsx protein xkdK	NA	A0A1V0DZX4	Clostridioides_phage	53.1	5.8e-97
AXU89864.1|1381965_1382394_+	phage-like element pbsx protein XkdM	NA	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AXU89865.1|1382507_1382954_+	Phage XkdN-like protein	NA	A0A090EUD0	Clostridium_phage	36.0	8.2e-13
AXU89866.1|1383147_1385601_+	phage protein	NA	A0A1V0DZX3	Clostridioides_phage	58.4	1.4e-16
AXU89867.1|1385600_1386023_+	phage-like element pbsx protein xkdP	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AXU89868.1|1386304_1387834_+	phage cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.3e-243
AXU89869.1|1387849_1388176_+	hypothetical protein	NA	J9QE86	Clostridium_phage	92.6	3.9e-52
AXU89870.1|1388175_1388604_+	phage protein	NA	A0A0A8WJ32	Clostridium_phage	81.0	3.7e-63
AXU89871.1|1388596_1389649_+	phage protein	NA	A0A0A8WFP3	Clostridium_phage	70.4	3.5e-139
AXU89872.1|1389645_1390344_+	phage protein	NA	A0A090D815	Clostridium_phage	56.9	9.5e-48
AXU89873.1|1390344_1391331_+|tail	phage tail fiber protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	7.6e-59
AXU89874.1|1391352_1396530_+	RCC1 domain-containing protein, alpha-tubulin suppressor	NA	A0A0A8WEY5	Clostridium_phage	27.2	2.6e-81
AXU89875.1|1396546_1396900_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	5.5e-12
AXU89876.1|1397162_1397423_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AXU89877.1|1397633_1398089_-	hypothetical protein	NA	NA	NA	NA	NA
AXU89878.1|1398316_1398736_-	phage regulatory protein	NA	S5MUV6	Brevibacillus_phage	35.9	1.6e-05
AXU89879.1|1399031_1399241_+	phage regulatory protein	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AXU89880.1|1399272_1399482_+	hypothetical protein	NA	NA	NA	NA	NA
AXU89881.1|1399698_1400097_-	phage regulatory protein	NA	A0A059T669	Listeria_phage	34.5	1.0e-06
>prophage 5
CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	4071596	1478557	1488286	4071596		Pandoravirus(37.5%)	11	NA	NA
AXU89948.1|1478557_1479142_+	para-aminobenzoate synthase glutamine amidotransferase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.2	2.5e-57
AXU89949.1|1479143_1480493_+	para-aminobenzoate synthase component I	NA	S4VNU7	Pandoravirus	41.6	7.7e-38
AXU89950.1|1480482_1481226_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AXU89951.1|1481259_1481961_+	hypothetical protein	NA	NA	NA	NA	NA
AXU89952.1|1481986_1482559_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	51.6	2.3e-44
AXU89953.1|1482624_1483416_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.0	1.1e-23
AXU89954.1|1483426_1483792_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AXU89955.1|1483784_1484291_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	S4VNV0	Pandoravirus	33.9	4.2e-13
AXU89956.1|1484271_1485057_+	chorismate biosynthesis-like protein	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
AXU89957.1|1485311_1487102_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AXU89958.1|1487119_1488286_+	RNA polymerase sigma factor (sigma-43)	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 6
CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	4071596	1581210	1601782	4071596	integrase	Streptococcus_phage(94.12%)	18	1578403:1578418	1605660:1605675
1578403:1578418	attL	TTCACTTGCTTGTCCT	NA	NA	NA	NA
AXU90041.1|1581210_1581978_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	3.4e-30
AXU90042.1|1581964_1583902_+	ABC transporter permease	NA	NA	NA	NA	NA
AXU90043.1|1584259_1584574_+	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
AXU90044.1|1584592_1584976_+	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	2.3e-64
AXU90045.1|1585004_1586390_+	conjugative transposon FtsK/SpoIIIE family protein	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AXU90046.1|1586567_1587773_+	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AXU90047.1|1587815_1588037_+	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AXU90048.1|1588153_1588651_+	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AXU90049.1|1589115_1591563_+	conjugative transposon ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
AXU90050.1|1591565_1593743_+	conjugative transposon membrane protein	NA	A0A1S5SF30	Streptococcus_phage	99.2	0.0e+00
AXU90051.1|1593739_1594741_+	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AXU90052.1|1594737_1595670_+	conjugative transposon exported protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
AXU90053.1|1596046_1597966_+	conjugative transposon tetracycline resistance protein	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
AXU90054.1|1598311_1598665_-	conjugative transposon regulatory protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AXU90055.1|1599169_1599592_+	conjugative transposon regulatory protein	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AXU90056.1|1599588_1599819_+	conjugative transposon protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AXU90057.1|1600279_1600483_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AXU90058.1|1600564_1601782_+|integrase	integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
1605660:1605675	attR	AGGACAAGCAAGTGAA	NA	NA	NA	NA
>prophage 7
CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	4071596	2170624	2175361	4071596		Clostridium_phage(100.0%)	10	NA	NA
AXU90569.1|2170624_2170867_-	hypothetical protein	NA	X5JAK5	Clostridium_phage	87.5	2.0e-29
AXU90570.1|2171231_2171450_-	hypothetical protein	NA	NA	NA	NA	NA
AXU90571.1|2171627_2171999_-	hypothetical protein	NA	NA	NA	NA	NA
AXU90572.1|2172441_2173014_-	phage protein	NA	A0A0A8WFN9	Clostridium_phage	65.7	1.4e-57
AXU90573.1|2173135_2173339_+	hypothetical protein	NA	NA	NA	NA	NA
AXU90574.1|2173357_2173732_+	hypothetical protein	NA	NA	NA	NA	NA
AXU90575.1|2173999_2174194_-	hypothetical protein	NA	Q24LC9	Clostridium_phage	93.4	3.0e-28
AXU90576.1|2174484_2174607_-	hypothetical protein	NA	A0A0A8WJ78	Clostridium_phage	74.3	6.3e-08
AXU90577.1|2174730_2175090_-	hypothetical protein	NA	A0A0A8WG34	Clostridium_phage	58.8	9.5e-36
AXU90578.1|2175103_2175361_-	hypothetical protein	NA	A0A0A8WJU8	Clostridium_phage	90.6	6.4e-34
>prophage 8
CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	4071596	2705642	2726937	4071596	integrase	Streptococcus_phage(88.89%)	19	2704611:2704626	2724820:2724835
2704611:2704626	attL	AAAATATTTTTTATAA	NA	NA	NA	NA
AXU91043.1|2705642_2705957_+	conjugative transposon protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
AXU91044.1|2705975_2706359_+	conjugative transposon protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	2.3e-64
AXU91045.1|2706387_2707773_+	conjugative transposon FtsK/SpoIIIE family protein	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AXU91046.1|2707950_2709156_+	conjugative transposon replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AXU91047.1|2709198_2709420_+	conjugative transposon protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AXU91048.1|2709536_2710034_+	conjugative transposon protein	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AXU91049.1|2710498_2712946_+	conjugative transposon ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
AXU91050.1|2712948_2715126_+	conjugative transposon membrane protein	NA	A0A1S5SF30	Streptococcus_phage	99.2	0.0e+00
AXU91051.1|2715122_2716124_+	cell wall hydrolase	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AXU91052.1|2716120_2717053_+	conjugative transposon exported protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
AXU91053.1|2717429_2719349_+	conjugative transposon tetracycline resistance protein	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
AXU91054.1|2719694_2720048_-	conjugative transposon regulatory protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AXU91055.1|2720552_2720975_+	conjugative transposon regulatory protein	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AXU91056.1|2720971_2721202_+	conjugative transposon protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AXU91057.1|2721662_2721866_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AXU91058.1|2721947_2723165_+|integrase	integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
AXU91059.1|2723469_2724579_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	33.3	1.1e-21
AXU91060.1|2724608_2725376_+	sugar diacid utilization regulator	NA	NA	NA	NA	NA
2724820:2724835	attR	AAAATATTTTTTATAA	NA	NA	NA	NA
AXU91061.1|2725563_2726937_-	transporter	NA	S4TR35	Salmonella_phage	22.0	2.5e-07
>prophage 9
CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	4071596	3108523	3117475	4071596		Catovirus(50.0%)	8	NA	NA
AXU91378.1|3108523_3110437_-	capsular polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AXU91379.1|3110519_3111611_-	capsular polysaccharide biosynthesis glycosyl transferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.0e-16
AXU91380.1|3111616_3112984_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.4	1.5e-89
AXU91381.1|3112937_3113690_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	40.5	3.5e-16
AXU91382.1|3113737_3114646_-	beta-glycosyltransferase	NA	NA	NA	NA	NA
AXU91383.1|3114667_3115417_-	teichuronic acid biosynthesis glycosyl transferase	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AXU91384.1|3115445_3116621_-	minor teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AXU91385.1|3116635_3117475_-	glycosyl transferase	NA	A0A2P1ELT8	Moumouvirus	25.9	1.8e-05
>prophage 10
CP019864	Clostridioides difficile strain DSM 29747 chromosome, complete genome	4071596	3680767	3729869	4071596	protease,integrase,transposase	Bacillus_phage(25.0%)	50	3704500:3704517	3736747:3736764
AXU91840.1|3680767_3681847_-|protease	protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.0	5.6e-15
AXU91841.1|3682001_3683351_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AXU91842.1|3683614_3685243_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
AXU91843.1|3685365_3686970_-	FAD-dependent dehydrogenase	NA	NA	NA	NA	NA
AXU91844.1|3687017_3687335_-	hypothetical protein	NA	NA	NA	NA	NA
AXU91845.1|3687339_3687705_-	hypothetical protein	NA	NA	NA	NA	NA
AXU91846.1|3687785_3688823_-	protein translocase	NA	NA	NA	NA	NA
AXU91847.1|3689075_3689660_-	hypothetical protein	NA	NA	NA	NA	NA
AXU91848.1|3689674_3690118_-	hypothetical protein	NA	NA	NA	NA	NA
AXU91849.1|3690118_3690991_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AXU91850.1|3691044_3691395_-	type IV pilin	NA	NA	NA	NA	NA
AXU91851.1|3691448_3692534_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU91852.1|3692704_3694054_-	type IV pilus-assembly protein	NA	NA	NA	NA	NA
AXU91853.1|3694076_3694757_-	membrane protein	NA	NA	NA	NA	NA
AXU91854.1|3695359_3696439_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
AXU91855.1|3697014_3698385_+	transporter	NA	NA	NA	NA	NA
AXU91856.1|3698648_3699260_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AXU91857.1|3699249_3701613_-|protease	ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	44.4	2.4e-175
AXU91858.1|3701792_3702305_+	chromate transport protein	NA	NA	NA	NA	NA
AXU91859.1|3702292_3702820_+	chromate transport protein	NA	NA	NA	NA	NA
AXU91860.1|3702888_3704139_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
AXU91861.1|3704157_3704742_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
3704500:3704517	attL	CATAGTATCATATATAGC	NA	NA	NA	NA
AXU91862.1|3704891_3706178_-	trigger factor	NA	NA	NA	NA	NA
AXU91863.1|3706371_3706842_-	phosphoesterase	NA	NA	NA	NA	NA
AXU91864.1|3706841_3708191_-	ribonuclease PH	NA	NA	NA	NA	NA
AXU91865.1|3708349_3710374_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	37.7	3.4e-114
AXU91866.1|3710560_3711499_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AXU91867.1|3711600_3712023_-	hypothetical protein	NA	NA	NA	NA	NA
AXU91868.1|3712210_3712801_+	transporter	NA	NA	NA	NA	NA
AXU91869.1|3713115_3713388_+	hypothetical protein	NA	NA	NA	NA	NA
AXU91870.1|3713443_3713641_+	hypothetical protein	NA	NA	NA	NA	NA
AXU91871.1|3713661_3713847_+	hypothetical protein	NA	NA	NA	NA	NA
AXU91872.1|3714334_3714550_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXU91873.1|3714742_3715426_-	bifunctional HTH-domain containing protein/aminotransferase	NA	NA	NA	NA	NA
AXU91874.1|3715674_3716004_+	hypothetical protein	NA	NA	NA	NA	NA
AXU91875.1|3716062_3717172_+	conjugative transposon replication initiation factor	NA	NA	NA	NA	NA
AXU91876.1|3717191_3717374_+	Helix-turn-helix domain protein	NA	NA	NA	NA	NA
AXU91877.1|3717459_3718734_+|integrase	integrase family protein	integrase	A0A1C8E994	Bacillus_phage	25.3	2.0e-19
AXU91878.1|3718863_3719553_+	transporter	NA	NA	NA	NA	NA
AXU91879.1|3719628_3720144_-	electron transport protein	NA	NA	NA	NA	NA
AXU91880.1|3720143_3721520_-	hydrogenase	NA	NA	NA	NA	NA
AXU91881.1|3721544_3722096_-	electron transport protein	NA	NA	NA	NA	NA
AXU91882.1|3722132_3722348_-	hypothetical protein	NA	NA	NA	NA	NA
AXU91883.1|3722316_3723150_-	formate dehydrogenase accessory protein	NA	NA	NA	NA	NA
AXU91884.1|3723198_3724878_-	formate dehydrogenase H	NA	NA	NA	NA	NA
AXU91885.1|3724926_3725343_-	formate dehydrogenase H	NA	NA	NA	NA	NA
AXU91886.1|3725593_3726652_-	ABC transporter permease	NA	NA	NA	NA	NA
AXU91887.1|3726862_3727522_-	two-component response regulator	NA	W8CYM9	Bacillus_phage	31.3	1.0e-27
AXU91888.1|3727831_3728461_+	hypothetical protein	NA	NA	NA	NA	NA
AXU91889.1|3728759_3729869_-|transposase	transposase-like protein B	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	3.1e-109
3736747:3736764	attR	CATAGTATCATATATAGC	NA	NA	NA	NA
