The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	0	10803	4496886		Bacillus_virus(50.0%)	5	NA	NA
AXX00478.1|524_734_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00479.1|6659_7418_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	5.3e-20
AXX00480.1|7426_8524_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXX00481.1|8526_9708_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AXX00482.1|9777_10803_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	2.0e-70
>prophage 2
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	17197	19294	4496886		Bacillus_virus(100.0%)	1	NA	NA
AXX00486.1|17197_19294_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	35.8	1.9e-22
>prophage 3
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	31873	32917	4496886		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AXX00500.1|31873_32917_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
>prophage 4
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	52200	53568	4496886	protease	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AXX00517.1|52200_53568_-|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	27.2	2.7e-22
>prophage 5
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	57525	61532	4496886	protease	Pseudomonas_phage(50.0%)	4	NA	NA
AXX00522.1|57525_58017_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	54.6	3.8e-27
AXX04505.1|58116_58908_+	transcriptional regulator NanR	NA	NA	NA	NA	NA
AXX00523.1|59042_59945_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
AXX00524.1|60041_61532_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	24.8	2.4e-08
>prophage 6
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	72597	86648	4496886		Staphylococcus_phage(25.0%)	16	NA	NA
AXX00530.1|72597_73533_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	32.0	9.8e-16
AXX00531.1|73644_75984_+	aerobic respiration two-component sensor histidine kinase ArcB	NA	A0A1V0SGX0	Hokovirus	30.8	5.8e-41
AXX00532.1|76220_76874_+	isoprenoid biosynthesis protein ElbB	NA	NA	NA	NA	NA
AXX00533.1|76870_77596_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AXX00534.1|77607_77880_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AXX04507.1|77876_78731_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.4	1.4e-05
AXX00535.1|78795_79281_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
AXX00536.1|79363_79651_-	ribosome hibernation promoting factor	NA	A0A0M7QCF2	Escherichia_phage	42.0	2.1e-09
AXX00537.1|79673_81113_-	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AXX00538.1|81208_81934_-	lipopolysaccharide ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.2e-22
AXX00539.1|81940_82498_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
AXX00540.1|82466_83042_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AXX00541.1|83038_83605_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	78.5	1.0e-55
AXX04508.1|83620_84607_-	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	31.5	3.0e-39
AXX00542.1|84621_85599_-	calcium/sodium antiporter	NA	NA	NA	NA	NA
AXX00543.1|85832_86648_+	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	30.7	2.6e-20
>prophage 7
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	90753	92293	4496886		Vibrio_phage(50.0%)	2	NA	NA
AXX00550.1|90753_91017_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	65.2	6.1e-16
AXX00551.1|91321_92293_-	octaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	25.0	5.1e-07
>prophage 8
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	96511	97174	4496886		Bacillus_phage(100.0%)	1	NA	NA
AXX00557.1|96511_97174_-	two-component system response regulator BasR	NA	W8CYM9	Bacillus_phage	36.4	7.9e-28
>prophage 9
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	100658	103532	4496886	protease	Bathycoccus_sp._RCC1105_virus(50.0%)	2	NA	NA
AXX00562.1|100658_102593_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5ESM9	Bathycoccus_sp._RCC1105_virus	43.6	2.0e-116
AXX00563.1|102683_103532_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	30.7	1.7e-19
>prophage 10
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	107888	110600	4496886		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
AXX00568.1|107888_110600_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	26.2	6.8e-25
>prophage 11
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	116055	117963	4496886		Klosneuvirus(100.0%)	1	NA	NA
AXX00574.1|116055_117963_+	DEAD/DEAH family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	34.7	7.8e-52
>prophage 12
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	123852	131901	4496886		Diadromus_pulchellus_ascovirus(25.0%)	11	NA	NA
AXX00581.1|123852_124140_-	GIY-YIG nuclease family protein	NA	F2NZ06	Diadromus_pulchellus_ascovirus	54.5	3.7e-14
AXX00582.1|124205_124640_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00583.1|124619_125138_-	type 1 glutamine amidotransferase	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	28.5	9.9e-10
AXX00584.1|125282_125933_+	oxidoreductase	NA	NA	NA	NA	NA
AXX00585.1|126009_127053_+	permease	NA	NA	NA	NA	NA
AXX00586.1|127110_127305_-	hypothetical protein	NA	NA	NA	NA	NA
AXX00587.1|127362_127938_-	osmotically-inducible protein OsmY	NA	NA	NA	NA	NA
AXX00588.1|127947_128538_-	DnaA initiator-associating protein DiaA	NA	A0A067XQR2	Caulobacter_phage	30.5	4.6e-11
AXX00589.1|128564_128960_-	YraN family protein	NA	NA	NA	NA	NA
AXX00590.1|128917_130978_-	penicillin-binding protein activator	NA	NA	NA	NA	NA
AXX00591.1|131040_131901_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	46.5	5.6e-50
>prophage 13
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	135595	137005	4496886		Bacillus_phage(100.0%)	1	NA	NA
AXX00595.1|135595_137005_-	glycosyl hydrolase family 32	NA	F8WPR5	Bacillus_phage	25.9	2.9e-19
>prophage 14
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	163672	164641	4496886		Escherichia_phage(100.0%)	1	NA	NA
AXX00623.1|163672_164641_-	TerC family protein	NA	A0A291LBC5	Escherichia_phage	34.1	2.6e-35
>prophage 15
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	171085	175496	4496886		Klosneuvirus(33.33%)	3	NA	NA
AXX00628.1|171085_172483_-	putrescine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	28.2	1.0e-32
AXX00629.1|172893_173781_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	38.8	1.4e-16
AXX00630.1|173972_175496_+	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	54.5	5.1e-38
>prophage 16
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	179184	183258	4496886		Pseudomonas_phage(50.0%)	4	NA	NA
AXX00634.1|179184_181338_+	YgiQ family radical SAM protein	NA	M1QSD9	Pseudomonas_phage	70.0	2.2e-103
AXX00635.1|181390_181777_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
AXX00636.1|181850_182312_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
AXX00637.1|182322_183258_-	aspartate carbamoyltransferase	NA	M1IFC1	Paramecium_bursaria_Chlorella_virus	39.9	6.5e-52
>prophage 17
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	191888	248428	4496886	transposase,integrase,capsid,tRNA	Escherichia_phage(20.0%)	59	210950:210993	237332:237375
AXX00647.1|191888_192653_+|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	tRNA	NA	NA	NA	NA
AXX00648.1|192697_193504_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00649.1|193552_194056_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXX00650.1|194250_195453_+	DUF898 domain-containing protein	NA	NA	NA	NA	NA
AXX00651.1|195568_198424_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.0	2.4e-142
AXX00652.1|198426_198888_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
AXX00653.1|199069_200581_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.2	1.7e-46
AXX00654.1|200771_200861_-	ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AXX00655.1|200850_201963_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
AXX00656.1|201949_203032_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AXX00657.1|203096_203564_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00658.1|203624_205268_+	dihydroxyacetone kinase	NA	NA	NA	NA	NA
AXX00659.1|205847_207512_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00660.1|207925_208945_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	32.3	3.8e-45
AXX00661.1|209053_209632_-	class I SAM-dependent methyltransferase	NA	A0A2H4J5G6	uncultured_Caudovirales_phage	46.2	1.4e-12
AXX00662.1|209631_210648_-	HNH endonuclease	NA	NA	NA	NA	NA
210950:210993	attL	ACCGTAGAAATACGTGCCGGTTCGAGTCCGGCCTTCGGCACCAT	NA	NA	NA	NA
AXX04513.1|211526_212735_+	DNA cytosine methyltransferase	NA	A7XXH6	Thermus_virus	28.6	1.1e-30
AXX00663.1|212731_213382_+	Eco29kI family restriction endonuclease	NA	NA	NA	NA	NA
AXX00664.1|213503_214079_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	39.8	1.5e-27
AXX00665.1|214318_214669_-	hypothetical protein	NA	NA	NA	NA	NA
AXX00666.1|214849_215056_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00667.1|216424_217342_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00668.1|217624_218584_-	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
AXX04514.1|218570_218852_-	hypothetical protein	NA	NA	NA	NA	NA
AXX00669.1|219452_219704_-	hypothetical protein	NA	NA	NA	NA	NA
AXX00670.1|219935_221213_-|integrase	integrase	integrase	NA	NA	NA	NA
AXX00671.1|221944_222313_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04515.1|222705_222999_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04516.1|222995_223193_-	hypothetical protein	NA	NA	NA	NA	NA
AXX00672.1|223198_223396_-	hypothetical protein	NA	NA	NA	NA	NA
AXX00673.1|223406_223988_-|integrase	integrase	integrase	NA	NA	NA	NA
AXX00674.1|226227_226836_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXX00675.1|226847_227132_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04517.1|227121_227241_+	sugar kinase	NA	Q6QLL3	Human_immunodeficiency_virus	94.7	1.3e-13
AXX00676.1|227278_228259_-|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	2.8e-186
AXX00677.1|228257_228470_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00678.1|228588_228828_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04518.1|228827_229052_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00679.1|229044_229362_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00680.1|229948_230167_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00681.1|230163_230532_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00682.1|230553_231588_+|capsid	phage capsid protein	capsid	NA	NA	NA	NA
AXX00683.1|231720_231918_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00684.1|231910_233776_+	hypothetical protein	NA	A0A1D7XFE4	Escherichia_phage	32.3	5.6e-63
AXX00685.1|233818_234490_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AXX00686.1|234789_235770_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	2.8e-186
AXX04519.1|235807_235924_-	sugar kinase	NA	Q6QLL3	Human_immunodeficiency_virus	100.0	1.2e-13
AXX04520.1|235981_237208_-|integrase	integrase	integrase	NA	NA	NA	NA
AXX00687.1|237538_238801_+	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	35.4	2.4e-65
237332:237375	attR	ACCGTAGAAATACGTGCCGGTTCGAGTCCGGCCTTCGGCACCAT	NA	NA	NA	NA
AXX00688.1|238831_239470_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00689.1|239849_240080_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AXX04521.1|240141_240726_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00690.1|240718_241078_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00691.1|241109_241394_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00692.1|241390_241774_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00693.1|241770_244443_+	alkaline-shock protein	NA	A0A1B0VP75	Pseudomonas_phage	34.4	1.6e-58
AXX00694.1|244843_245605_+	septation initiation protein	NA	NA	NA	NA	NA
AXX00695.1|245604_245877_+	hypothetical protein	NA	A0A2I8TV89	Erwinia_phage	44.9	1.4e-07
AXX00696.1|246190_248428_+	hypothetical protein	NA	Q7Y4B3	Escherichia_virus	23.7	4.7e-08
>prophage 18
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	259874	260984	4496886		Planktothrix_phage(100.0%)	1	NA	NA
AXX00709.1|259874_260984_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.8	9.5e-26
>prophage 19
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	270315	271389	4496886		Enterobacteria_phage(100.0%)	1	NA	NA
AXX00716.1|270315_271389_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	44.9	2.5e-76
>prophage 20
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	274632	275655	4496886		Enterobacteria_phage(100.0%)	1	NA	NA
AXX00721.1|274632_275655_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.5	6.7e-26
>prophage 21
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	288916	290704	4496886		Bacillus_phage(100.0%)	1	NA	NA
AXX00729.1|288916_290704_+	HAMP domain-containing protein	NA	A0A127AWB9	Bacillus_phage	38.4	1.9e-20
>prophage 22
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	294505	295791	4496886		Shigella_phage(50.0%)	2	NA	NA
AXX00732.1|294505_295243_-	DNA replication protein DnaC	NA	V5UQI5	Shigella_phage	52.1	4.0e-65
AXX00733.1|295245_295791_-	primosomal protein DnaT	NA	T1SA92	Salmonella_phage	57.4	2.1e-26
>prophage 23
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	308122	311022	4496886		Streptococcus_phage(50.0%)	3	NA	NA
AXX00749.1|308122_309712_+	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	25.2	2.4e-30
AXX00750.1|310118_310733_+	molecular chaperone OsmY	NA	NA	NA	NA	NA
AXX00751.1|310842_311022_+	DUF1328 domain-containing protein	NA	A0A0N7CBR2	Salmonella_phage	66.0	8.9e-11
>prophage 24
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	315674	316997	4496886		Geobacillus_virus(100.0%)	1	NA	NA
AXX00756.1|315674_316997_+	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	39.2	5.2e-79
>prophage 25
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	323525	324758	4496886		Enterococcus_phage(100.0%)	1	NA	NA
AXX00763.1|323525_324758_+	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA	A0A0C5K935	Enterococcus_phage	43.5	4.1e-86
>prophage 26
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	328205	328871	4496886		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
AXX00767.1|328205_328871_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.6	1.3e-06
>prophage 27
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	341626	345463	4496886		Klosneuvirus(50.0%)	2	NA	NA
AXX00775.1|341626_343294_-	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	26.7	2.6e-43
AXX00776.1|343528_345463_+	murein transglycosylase	NA	A0A1P8CWQ1	Bacillus_phage	37.6	6.8e-11
>prophage 28
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	348631	350748	4496886		Bacillus_phage(50.0%)	2	NA	NA
AXX00782.1|348631_349324_+	two-component system response regulator CreB	NA	W8CYM9	Bacillus_phage	35.1	8.8e-30
AXX00783.1|349323_350748_+	two-component system sensor histidine kinase CreC	NA	Q8QKV7	Ectocarpus_siliculosus_virus	27.4	6.3e-14
>prophage 29
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	361862	362816	4496886		Synechococcus_phage(100.0%)	1	NA	NA
AXX00792.1|361862_362816_+	transaldolase	NA	A0A0E3G6C9	Synechococcus_phage	35.2	7.4e-11
>prophage 30
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	365856	381119	4496886	tRNA	Chrysochromulina_ericina_virus(16.67%)	13	NA	NA
AXX00796.1|365856_367773_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.1	9.9e-148
AXX00797.1|367857_368997_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	37.4	1.6e-28
AXX00798.1|369021_369201_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00799.1|369268_370216_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXX00800.1|370399_370738_+	hypothetical protein	NA	NA	NA	NA	NA
AXX00801.1|370785_371325_-	hypothetical protein	NA	A0A0U2I1S0	Escherichia_phage	61.3	5.2e-62
AXX00802.1|371346_371793_-	hypothetical protein	NA	NA	NA	NA	NA
AXX00803.1|372195_374283_+	chitinase	NA	A0A023MI68	Agrotis_segetum_granulosis_virus	29.9	7.2e-35
AXX00804.1|374517_375690_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	48.5	3.0e-78
AXX00805.1|375761_376658_+	transcriptional activator NhaR	NA	NA	NA	NA	NA
AXX00806.1|376734_376998_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AXX00807.1|377315_378254_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AXX00808.1|378302_381119_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2K9L260	Tupanvirus	26.6	4.2e-78
>prophage 31
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	395807	396956	4496886		Halovirus(100.0%)	1	NA	NA
AXX00821.1|395807_396956_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.6	4.4e-50
>prophage 32
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	405116	406714	4496886		Bacillus_phage(50.0%)	2	NA	NA
AXX00828.1|405116_405596_+	type 3 dihydrofolate reductase	NA	A0A219UQN5	Bacillus_phage	44.4	2.7e-30
AXX00829.1|405862_406714_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	A0A0E3T919	Enterococcus_phage	43.5	3.8e-06
>prophage 33
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	414363	419764	4496886		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
AXX00837.1|414363_417270_-	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	36.6	1.1e-20
AXX00838.1|417403_419764_-	DNA polymerase II	NA	A0A0P0YM26	Yellowstone_lake_phycodnavirus	26.1	9.7e-36
>prophage 34
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	425969	426671	4496886		Planktothrix_phage(100.0%)	1	NA	NA
AXX00843.1|425969_426671_-	thiamine ABC transporter ATP-binding protein ThiQ	NA	G9BWD6	Planktothrix_phage	34.4	1.8e-22
>prophage 35
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	439604	441329	4496886		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
AXX00856.1|439604_441329_+	acetolactate synthase 3 large subunit	NA	E5ERI2	Ostreococcus_lucimarinus_virus	26.4	6.0e-35
>prophage 36
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	467261	468305	4496886		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
AXX00881.1|467261_468305_+	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	57.2	1.3e-104
>prophage 37
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	472598	473162	4496886		Sphingobium_phage(100.0%)	1	NA	NA
AXX00886.1|472598_473162_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	32.5	5.7e-11
>prophage 38
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	484268	485693	4496886		Erysipelothrix_phage(100.0%)	1	NA	NA
AXX04527.1|484268_485693_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.9	1.6e-41
>prophage 39
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	496553	503377	4496886		Mamastrovirus(33.33%)	5	NA	NA
AXX00903.1|496553_498116_+	multicopper oxidase CueO	NA	A0A0C6DWA2	Mamastrovirus	52.6	3.9e-17
AXX00904.1|498498_500895_-	glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase	NA	NA	NA	NA	NA
AXX00905.1|501087_501624_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	35.5	6.0e-18
AXX00906.1|501679_502342_-	carbonate dehydratase	NA	NA	NA	NA	NA
AXX00907.1|502450_503377_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	3.1e-22
>prophage 40
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	508303	515102	4496886	tRNA	Bacillus_virus(50.0%)	6	NA	NA
AXX00914.1|508303_509725_-	polynucleotide adenylyltransferase PcnB	NA	G3MAR3	Bacillus_virus	30.0	2.9e-27
AXX00915.1|509756_510653_-|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
AXX00916.1|510722_511178_-	RNA polymerase-binding transcription factor DksA	NA	NA	NA	NA	NA
AXX00917.1|511356_512061_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
AXX00918.1|512070_512601_-	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA	NA
AXX00919.1|512672_515102_+	ATP-dependent helicase HrpB	NA	A0A2H4UU36	Bodo_saltans_virus	28.3	2.5e-34
>prophage 41
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	520251	521049	4496886		Planktothrix_phage(100.0%)	1	NA	NA
AXX00922.1|520251_521049_+	iron-hydroxamate transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	27.9	3.2e-15
>prophage 42
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	527075	527420	4496886		Lake_Baikal_phage(100.0%)	1	NA	NA
AXX00927.1|527075_527420_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	50.5	3.5e-27
>prophage 43
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	531349	532777	4496886	protease	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AXX00932.1|531349_532777_+|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.4	1.6e-25
>prophage 44
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	542885	543644	4496886		Flavobacterium_phage(100.0%)	1	NA	NA
AXX00940.1|542885_543644_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	43.7	6.5e-26
>prophage 45
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	552471	556580	4496886		Emiliania_huxleyi_virus(50.0%)	2	NA	NA
AXX00949.1|552471_553068_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	39.8	4.6e-27
AXX00950.1|553097_556580_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	37.0	4.1e-208
>prophage 46
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	570987	572019	4496886		Planktothrix_phage(100.0%)	1	NA	NA
AXX00967.1|570987_572019_-	D-methionine ABC transporter, ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.1e-35
>prophage 47
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	578442	586282	4496886		Staphylococcus_phage(20.0%)	9	NA	NA
AXX00969.1|578442_579246_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	34.2	1.2e-35
AXX00970.1|579264_580152_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.1	3.9e-14
AXX00971.1|580369_581173_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
AXX00972.1|581243_582014_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXX00973.1|582075_583449_-	murein transglycosylase D	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	36.0	7.7e-09
AXX00974.1|583520_584276_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AXX00975.1|584308_585025_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AXX00976.1|585021_585498_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	57.1	2.9e-48
AXX00977.1|585550_586282_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	40.1	5.8e-40
>prophage 48
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	590129	590711	4496886		Caulobacter_phage(100.0%)	1	NA	NA
AXX00979.1|590129_590711_+	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	31.4	1.7e-13
>prophage 49
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	597922	673030	4496886	terminase,tail,integrase,head,transposase,protease	Cronobacter_phage(42.47%)	102	601788:601836	681457:681505
AXX04531.1|597922_598993_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	57.1	3.9e-109
AXX00987.1|599284_600388_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.3	1.4e-58
AXX00988.1|600398_601652_+	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.1	3.4e-96
601788:601836	attL	CGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA	NA	NA	NA	NA
AXX00989.1|601850_603014_-|integrase	integrase	integrase	F1C5B2	Cronobacter_phage	98.4	6.5e-227
AXX00990.1|603272_603620_-	hypothetical protein	NA	F1C5B4	Cronobacter_phage	96.5	3.8e-58
AXX00991.1|603654_603909_-	lF-82	NA	A0A1V0E5L9	Salmonella_phage	42.9	1.4e-09
AXX04532.1|603963_604527_-	DUF3850 domain-containing protein	NA	G1CSS0	Cronobacter_virus	75.0	4.1e-17
AXX00992.1|604544_605030_-	hypothetical protein	NA	G9L661	Escherichia_phage	83.8	2.2e-72
AXX00993.1|605029_605482_-	hypothetical protein	NA	F1C5B5	Cronobacter_phage	61.3	3.2e-36
AXX00994.1|605478_606114_-	hypothetical protein	NA	F1C5B6	Cronobacter_phage	44.1	5.6e-23
AXX00995.1|606110_606272_-	DUF2737 domain-containing protein	NA	A0A0K2FIU6	Enterobacter_phage	56.9	3.5e-06
AXX00996.1|606282_606588_-	hypothetical protein	NA	NA	NA	NA	NA
AXX00997.1|606605_607154_-	3'-5' exoribonuclease	NA	C6ZR35	Salmonella_phage	85.0	4.2e-91
AXX00998.1|607162_607660_-	single-stranded DNA-binding protein	NA	Q8VNQ1	Enterobacteria_phage	74.1	3.4e-52
AXX04533.1|607643_608132_-	hypothetical protein	NA	B5LPN5	Bacillus_virus	39.0	2.4e-05
AXX00999.1|608171_608795_-	single-stranded DNA-binding protein	NA	A0A1W6JP21	Morganella_phage	68.8	4.9e-72
AXX01000.1|608924_609113_-	protein kil	NA	A0A075B8F9	Enterobacteria_phage	79.0	3.7e-23
AXX01001.1|609093_609246_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	A0A075B8H4	Enterobacteria_phage	71.4	1.1e-12
AXX01002.1|609314_609587_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01003.1|609947_610205_-	hypothetical protein	NA	S4TW48	Salmonella_phage	43.5	7.8e-08
AXX01004.1|610270_610459_-	hypothetical protein	NA	Q76ZG8	Enterobacteria_phage	63.6	2.6e-13
AXX01005.1|610459_610801_-	hypothetical protein	NA	C6ZR42	Salmonella_phage	36.9	2.0e-06
AXX01006.1|610845_611325_-	hypothetical protein	NA	A0A220NQW1	Salmonella_phage	84.1	4.2e-47
AXX04534.1|611329_611680_-	hypothetical protein	NA	F1C5C1	Cronobacter_phage	78.0	2.7e-35
AXX01007.1|612079_612271_+	hypothetical protein	NA	G8C7T7	Escherichia_phage	50.0	1.6e-10
AXX01008.1|612293_612728_-	biopolymer transporter ExbB	NA	M1FPN8	Enterobacteria_phage	99.3	9.3e-70
AXX01009.1|612743_613583_-	protein rexA	NA	M1FPD4	Enterobacteria_phage	99.3	2.6e-153
AXX01010.1|613695_614409_-	LexA family transcriptional repressor	NA	A4KWS0	Enterobacteria_phage	62.2	3.3e-80
AXX01011.1|614512_614716_+	hypothetical protein	NA	A4KWW0	Enterobacteria_phage	69.8	3.3e-17
AXX01012.1|614828_615104_+	hypothetical protein	NA	A0A220NRS4	Escherichia_phage	74.7	1.7e-29
AXX01013.1|615290_616187_+	DNA replication protein	NA	F1C5C3	Cronobacter_phage	90.3	9.0e-152
AXX01014.1|616176_617577_+	helicase DnaB	NA	F1C5C4	Cronobacter_phage	98.5	1.0e-258
AXX01015.1|617576_617879_+	hypothetical protein	NA	Q5G8S7	Enterobacteria_phage	68.5	6.3e-33
AXX01016.1|617881_618637_+	hypothetical protein	NA	G1CSS0	Cronobacter_virus	81.6	4.6e-16
AXX04535.1|618904_619255_+	winged helix-turn-helix domain-containing protein	NA	F1C5C6	Cronobacter_phage	98.3	3.2e-60
AXX01017.1|619392_619833_+	recombination protein NinB	NA	F1C5C7	Cronobacter_phage	91.1	1.9e-70
AXX01018.1|619829_620009_+	NinE family protein	NA	A0A220NRK6	Escherichia_phage	60.3	1.1e-11
AXX01019.1|620001_620187_+	NinF family protein	NA	I6R994	Salmonella_phage	60.7	4.0e-14
AXX01020.1|620170_620416_+	hypothetical protein	NA	G0ZNC3	Cronobacter_phage	95.1	1.0e-36
AXX01021.1|620473_620869_+	hypothetical protein	NA	F1C5C9	Cronobacter_phage	96.9	1.4e-69
AXX01022.1|620865_621057_+	protein ninH	NA	Q777W6	Enterobacteria_phage	63.3	2.4e-09
AXX01023.1|621053_621233_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01024.1|621229_621571_+	hypothetical protein	NA	A0A1P8DTU9	Salmonella_phage	76.4	4.2e-49
AXX01025.1|621567_622086_+	DUF1133 domain-containing protein	NA	A0A192Y911	Salmonella_phage	91.3	1.4e-88
AXX04536.1|622949_623156_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01026.1|623152_623431_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01027.1|623427_623895_+	lysozyme	NA	H9C148	Vibrio_phage	43.1	4.3e-28
AXX01028.1|623894_624149_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01029.1|624145_624415_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01030.1|624556_624745_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01031.1|624951_625494_+	DNA-binding protein	NA	A0A220NRM9	Escherichia_phage	54.2	3.2e-51
AXX04537.1|625752_625953_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01032.1|625962_626394_+|terminase	terminase small subunit	terminase	E5AGA2	Erwinia_phage	85.6	6.7e-52
AXX01033.1|626380_627859_+	DNA-packaging protein	NA	G0ZND4	Cronobacter_phage	96.6	3.2e-279
AXX01034.1|627895_628075_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01035.1|628142_629483_+	DUF1073 domain-containing protein	NA	G0ZND5	Cronobacter_phage	96.2	2.0e-240
AXX01036.1|629433_630393_+|head	phage head morphogenesis protein	head	G0ZND6	Cronobacter_phage	80.6	1.2e-24
AXX01037.1|630409_631684_+	hypothetical protein	NA	G0ZND7	Cronobacter_phage	99.5	3.4e-237
AXX01038.1|631683_632136_+	hypothetical protein	NA	G0ZND8	Cronobacter_phage	99.3	4.1e-76
AXX01039.1|632150_633248_+	hypothetical protein	NA	G0ZND9	Cronobacter_phage	99.7	5.2e-210
AXX01040.1|633258_633555_+	hypothetical protein	NA	G0ZNE0	Cronobacter_phage	98.0	3.1e-48
AXX04538.1|633614_634016_+	hypothetical protein	NA	G0ZNE1	Cronobacter_phage	97.7	1.9e-69
AXX01041.1|634015_634186_+	50S ribosomal protein L13	NA	Q5G8X7	Enterobacteria_phage	50.0	1.2e-12
AXX01042.1|634188_634539_+	hypothetical protein	NA	G0ZNE2	Cronobacter_phage	96.5	9.2e-60
AXX01043.1|634541_634913_+	hypothetical protein	NA	G0ZNE3	Cronobacter_phage	99.2	1.5e-60
AXX01044.1|634909_635293_+	hypothetical protein	NA	G0ZNE4	Cronobacter_phage	98.4	3.1e-69
AXX01045.1|635319_636066_+	DNA breaking-rejoining protein	NA	G0ZNE6	Cronobacter_phage	71.7	1.9e-91
AXX01046.1|636117_636804_+	hypothetical protein	NA	G0ZNE7	Cronobacter_phage	68.2	1.3e-86
AXX01047.1|636796_637474_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01048.1|637543_641026_+	hypothetical protein	NA	R9TMK1	Aeromonas_phage	60.5	4.2e-261
AXX01049.1|641025_641523_+	hypothetical protein	NA	F1C5F0	Cronobacter_phage	97.6	1.5e-95
AXX01050.1|641522_641993_+	hypothetical protein	NA	F1C5F1	Cronobacter_phage	93.6	4.1e-79
AXX01051.1|641955_642372_+	peptidoglycan endopeptidase	NA	F1C5F2	Cronobacter_phage	83.3	2.1e-66
AXX01052.1|642358_644836_+|tail	phage tail protein	tail	F1C5A7	Cronobacter_phage	93.4	0.0e+00
AXX01053.1|646753_648184_-	hypothetical protein	NA	E7C9N7	Salmonella_phage	28.7	7.4e-15
AXX01054.1|648185_649097_-	glycosyltransferase	NA	F1C5B0	Cronobacter_phage	90.1	1.5e-157
AXX01055.1|649093_649456_-	GtrA family protein	NA	F1C5B1	Cronobacter_phage	97.5	2.0e-57
AXX01056.1|650161_650503_-	toxin	NA	NA	NA	NA	NA
AXX01057.1|650523_650841_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
AXX04539.1|650861_651083_-	DUF987 domain-containing protein	NA	NA	NA	NA	NA
AXX01058.1|651091_651568_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01059.1|651583_652042_-	antirestriction protein	NA	A9J566	Pseudomonas_phage	32.8	3.4e-14
AXX01060.1|652143_652383_-	DUF905 domain-containing protein	NA	NA	NA	NA	NA
AXX01061.1|652459_652927_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01062.1|652950_653394_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01063.1|653393_653630_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01064.1|653666_654368_-	WYL domain-containing protein	NA	NA	NA	NA	NA
AXX01065.1|654584_655406_-	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	38.8	2.1e-46
AXX01066.1|655497_656361_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01067.1|657740_658721_+|transposase	IS5/IS1182 family transposase	transposase	A0A077K814	Ralstonia_phage	57.0	1.5e-91
AXX01068.1|658945_660097_-	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.3	9.9e-26
AXX01069.1|660121_661087_-|protease	Zn-dependent protease	protease	NA	NA	NA	NA
AXX01070.1|661064_661562_-	phosphate-starvation-inducible E family protein	NA	NA	NA	NA	NA
AXX01071.1|661564_663274_-	sodium:proton exchanger	NA	NA	NA	NA	NA
AXX01072.1|663277_663718_-	thioredoxin TrxC	NA	A0A1J0GW78	Streptomyces_phage	37.2	5.8e-11
AXX01073.1|663707_664853_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01074.1|664932_665544_-	HdeD family acid-resistance protein	NA	NA	NA	NA	NA
AXX01075.1|665633_666521_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01076.1|666623_667538_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01077.1|667560_668019_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
AXX01078.1|668106_669933_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	C7U047	Ostreococcus_tauri_virus	40.9	1.8e-98
AXX01079.1|670180_673030_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	41.1	4.0e-129
681457:681505	attR	CGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA	NA	NA	NA	NA
>prophage 50
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	679953	694076	4496886	capsid	Enterobacteria_phage(42.86%)	13	NA	NA
AXX01087.1|679953_681273_-	DUF4102 domain-containing protein	NA	A0A221SAN4	Ralstonia_phage	27.7	4.5e-06
AXX01088.1|681669_682851_+	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	55.9	6.2e-124
AXX01089.1|682857_683652_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01090.1|683758_683965_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
AXX01091.1|684019_684889_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01092.1|684907_685909_+|capsid	major capsid protein	capsid	F1BUM2	Cronobacter_phage	47.7	2.8e-77
AXX01093.1|686005_686578_+	Ash-like/host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	48.0	2.2e-18
AXX01094.1|686574_686808_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01095.1|686797_687208_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01096.1|687204_689892_+	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	34.0	2.6e-109
AXX01097.1|690171_690444_+	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	51.2	1.1e-20
AXX01098.1|691068_692502_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01099.1|693011_694076_+	hypothetical protein	NA	Q7M293	Enterobacteria_phage	35.2	1.0e-53
>prophage 51
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	698074	699055	4496886	transposase	Escherichia_phage(100.0%)	1	NA	NA
AXX01106.1|698074_699055_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	2.8e-186
>prophage 52
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	704553	706698	4496886		Indivirus(100.0%)	1	NA	NA
AXX01112.1|704553_706698_-	pyrroloquinoline quinone biosynthesis protein PqqF	NA	A0A1V0SD84	Indivirus	24.3	2.7e-08
>prophage 53
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	718818	723272	4496886		Enterobacteria_phage(50.0%)	2	NA	NA
AXX01127.1|718818_719901_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	45.2	9.1e-74
AXX01128.1|720140_723272_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	61.5	0.0e+00
>prophage 54
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	729261	730284	4496886		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AXX01133.1|729261_730284_+	methionine ABC transporter ATP-binding protein	NA	F2Y165	Organic_Lake_phycodnavirus	24.3	2.4e-07
>prophage 55
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	748428	749352	4496886		Morganella_phage(100.0%)	1	NA	NA
AXX01150.1|748428_749352_+	lipid A biosynthesis palmitoleoyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	54.3	7.5e-77
>prophage 56
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	761116	761896	4496886		Planktothrix_phage(100.0%)	1	NA	NA
AXX01159.1|761116_761896_+	taurine ABC transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	39.7	8.7e-26
>prophage 57
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	771998	773156	4496886		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXX01168.1|771998_773156_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	A0A2H4JAN9	uncultured_Caudovirales_phage	22.5	4.3e-05
>prophage 58
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	788865	797439	4496886		Bacillus_phage(60.0%)	6	NA	NA
AXX04544.1|788865_789777_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	64.9	4.2e-104
AXX01188.1|789903_790815_+	fructokinase	NA	NA	NA	NA	NA
AXX01189.1|790854_794004_-	exonuclease subunit SbcC	NA	G3MAB6	Bacillus_virus	27.9	7.6e-12
AXX01190.1|794000_795215_-	exonuclease subunit SbcD	NA	A0A217ER54	Bacillus_phage	25.4	1.5e-08
AXX01191.1|795413_796103_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	7.4e-37
AXX01192.1|796125_797439_+	two-component system sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	30.8	6.0e-27
>prophage 59
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	808624	820325	4496886	tRNA	uncultured_Mediterranean_phage(50.0%)	13	NA	NA
AXX04545.1|808624_809752_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	46.6	9.5e-90
AXX01200.1|809773_810106_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.0	2.8e-10
AXX01201.1|810133_811981_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AXX01202.1|811991_812963_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	37.7	2.7e-45
AXX01203.1|813156_814035_-	nucleoside-specific channel-forming protein Tsx	NA	NA	NA	NA	NA
AXX01204.1|814375_814936_-	DUF3251 domain-containing protein	NA	NA	NA	NA	NA
AXX01205.1|815090_815540_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AXX01206.1|815543_816647_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	34.7	1.6e-49
AXX01207.1|816734_817205_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	46.1	1.5e-28
AXX01208.1|817226_817646_+	N utilization substance protein B	NA	NA	NA	NA	NA
AXX04546.1|817832_818813_+	thiamine-phosphate kinase	NA	NA	NA	NA	NA
AXX01209.1|818787_819309_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
AXX01210.1|819350_820325_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	22.1	3.0e-07
>prophage 60
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	834192	835893	4496886		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
AXX01224.1|834192_835893_+	molecular chaperone HscC	NA	A0A0G2YAL1	Acanthamoeba_polyphaga_mimivirus	35.1	2.1e-77
>prophage 61
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	841904	846949	4496886	protease	Agrobacterium_phage(25.0%)	4	NA	NA
AXX01230.1|841904_842528_+	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	63.4	2.4e-63
AXX01231.1|842651_843926_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.7	6.6e-132
AXX01232.1|844112_846467_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.6	2.7e-224
AXX01233.1|846676_846949_+	DNA-binding protein HU-beta	NA	A3E2K9	Sodalis_phage	59.6	5.0e-21
>prophage 62
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	852911	853607	4496886		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXX01237.1|852911_853607_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	71.6	1.0e-89
>prophage 63
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	861330	864877	4496886		Bacillus_phage(100.0%)	2	NA	NA
AXX01243.1|861330_863106_+	multidrug ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	1.0e-45
AXX01244.1|863098_864877_+	multidrug ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.1	3.1e-42
>prophage 64
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	887383	888175	4496886		Bacillus_virus(100.0%)	1	NA	NA
AXX01265.1|887383_888175_-	ABC transporter	NA	G3M9Y6	Bacillus_virus	31.0	2.8e-19
>prophage 65
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	895336	898486	4496886		Leptospira_phage(100.0%)	1	NA	NA
AXX01275.1|895336_898486_-	multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	23.4	9.5e-55
>prophage 66
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	905336	907940	4496886		Klosneuvirus(50.0%)	2	NA	NA
AXX01281.1|905336_905888_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.9	1.2e-29
AXX01282.1|905978_907940_+	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	37.7	4.7e-44
>prophage 67
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	915132	917007	4496886		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AXX01290.1|915132_917007_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.1	5.7e-116
>prophage 68
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	920756	921911	4496886		Streptococcus_phage(100.0%)	1	NA	NA
AXX01294.1|920756_921911_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.4	1.3e-49
>prophage 69
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	928472	972696	4496886	integrase,tRNA,head,lysis,plate,protease	Cronobacter_phage(29.41%)	45	951886:951916	986045:986075
AXX01300.1|928472_928952_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AXX01301.1|929153_929954_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
AXX01302.1|930225_932733_-	copper-exporting P-type ATPase CopA	NA	A0A218MNH6	uncultured_virus	36.7	2.7e-105
AXX01303.1|932841_933252_+	HTH-type transcriptional regulator CueR	NA	NA	NA	NA	NA
AXX01304.1|933254_933974_-	DUF3142 domain-containing protein	NA	NA	NA	NA	NA
AXX01305.1|933943_936088_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01306.1|936181_936637_-	NfeD family protein	NA	NA	NA	NA	NA
AXX01307.1|937658_938513_-	co-chaperone YbbN	NA	NA	NA	NA	NA
AXX01308.1|938571_939342_-	oxidoreductase	NA	NA	NA	NA	NA
AXX04550.1|939370_940030_-|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	protease	NA	NA	NA	NA
AXX01309.1|939967_940654_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	1.3e-33
AXX01310.1|940650_943065_+	ABC transporter permease	NA	NA	NA	NA	NA
AXX01311.1|943054_944188_-|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AXX01312.1|944523_945894_+	CBS domain-containing protein	NA	A0A1X9I5F1	Streptococcus_phage	36.1	8.1e-43
AXX01313.1|945905_947051_+	PLP-dependent transferase	NA	NA	NA	NA	NA
AXX01314.1|947300_948368_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AXX01315.1|948364_948874_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA	NA
AXX01316.1|949006_949729_-	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
AXX01317.1|949732_950227_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AXX01318.1|950403_951789_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L4N2	Tupanvirus	32.9	1.3e-43
951886:951916	attL	TTGTAGGGTGGGTAAGCGAAGCGCACCCACC	NA	NA	NA	NA
AXX01319.1|951997_953014_-	Mal regulon transcriptional regulator MalI	NA	NA	NA	NA	NA
AXX01320.1|953078_954578_-	PTS N-acetylglucosamine transporter subunit IICB	NA	NA	NA	NA	NA
AXX01321.1|954854_955067_-	ribosome-associated protein	NA	NA	NA	NA	NA
AXX01322.1|955068_955935_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	37.7	3.8e-30
AXX01323.1|956235_957399_-|integrase	site-specific integrase	integrase	A0A0M4R586	Salmonella_phage	87.2	1.8e-200
AXX01324.1|957625_957979_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01325.1|958010_958358_-	hypothetical protein	NA	F1C5B4	Cronobacter_phage	92.2	8.8e-55
AXX01326.1|958392_958647_-	lF-82	NA	A0A1V0E5L9	Salmonella_phage	46.0	2.8e-10
AXX01327.1|958736_958949_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01328.1|958948_959551_-	DUF3850 domain-containing protein	NA	A0A0P0I3U9	Klebsiella_phage	55.3	1.2e-14
AXX01329.1|959547_959760_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01330.1|960068_960326_+	hypothetical protein	NA	G0ZNC5	Cronobacter_phage	98.8	5.9e-40
AXX01331.1|960322_960502_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01332.1|960498_961263_+	antitermination protein	NA	G0ZNC6	Cronobacter_phage	97.6	1.0e-132
AXX01333.1|961523_961805_-	DUF1456 domain-containing protein	NA	NA	NA	NA	NA
AXX01334.1|962023_962269_+|lysis	lysis protein	lysis	A0A2H4JCI1	uncultured_Caudovirales_phage	85.7	1.4e-27
AXX01335.1|962271_962775_+	lysozyme	NA	A0A2H4JCH1	uncultured_Caudovirales_phage	73.1	2.6e-71
AXX01336.1|962764_963229_+|lysis	lysis protein	lysis	G0ZNC9	Cronobacter_phage	72.5	4.4e-49
AXX04551.1|963621_963822_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01337.1|963831_964278_+	ubiquitin carboxyl-hydrolase	NA	Q716H4	Shigella_phage	76.5	6.0e-48
AXX01338.1|965116_966097_+|head	phage head morphogenesis protein	head	F1C5D8	Cronobacter_phage	97.3	2.1e-162
AXX01339.1|967904_970280_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.6	3.6e-30
AXX01340.1|970335_970596_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01341.1|970601_971390_+	TagK domain-containing protein	NA	NA	NA	NA	NA
AXX01342.1|972213_972696_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
986045:986075	attR	GGTGGGTGCGCTTCGCTTACCCACCCTACAA	NA	NA	NA	NA
>prophage 70
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	982082	985964	4496886		Tupanvirus(100.0%)	1	NA	NA
AXX01350.1|982082_985964_+	enterobactin synthase subunit F	NA	A0A2K9KZV5	Tupanvirus	29.5	1.0e-58
>prophage 71
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	991595	993815	4496886		Bacillus_virus(50.0%)	2	NA	NA
AXX01357.1|991595_993161_+	alkyl hydroperoxide reductase subunit F	NA	G3MA85	Bacillus_virus	33.7	1.6e-42
AXX01358.1|993386_993815_-	universal stress protein UspG	NA	A0A1W6JNV4	Morganella_phage	39.2	4.8e-18
>prophage 72
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1000985	1002101	4496886		Planktothrix_phage(100.0%)	1	NA	NA
AXX01365.1|1000985_1002101_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.7	9.9e-23
>prophage 73
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1009302	1010155	4496886		Morganella_phage(50.0%)	2	NA	NA
AXX01371.1|1009302_1009542_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	72.9	8.0e-23
AXX01372.1|1009771_1010155_-	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	47.3	2.2e-22
>prophage 74
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1015006	1017547	4496886		Stx2-converting_phage(50.0%)	2	NA	NA
AXX01379.1|1015006_1016221_-	serine-type D-Ala-D-Ala carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	47.8	1.6e-103
AXX01380.1|1016365_1017547_-	endolytic peptidoglycan transglycosylase RlpA	NA	F5B3X9	Synechococcus_phage	53.2	1.5e-08
>prophage 75
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1023984	1028047	4496886	tRNA	Staphylococcus_phage(50.0%)	3	NA	NA
AXX01388.1|1023984_1026591_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	42.7	1.8e-184
AXX01389.1|1026794_1027277_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01390.1|1027273_1028047_-	arginine transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	37.7	2.6e-30
>prophage 76
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1033878	1034958	4496886		Pseudomonas_phage(100.0%)	1	NA	NA
AXX01397.1|1033878_1034958_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	46.6	4.3e-47
>prophage 77
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1038923	1040588	4496886		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
AXX01400.1|1038923_1040588_-	asparagine synthase B	NA	A9YVS6	Ostreococcus_tauri_virus	39.8	6.5e-87
>prophage 78
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1047895	1049563	4496886	tRNA	Escherichia_phage(100.0%)	1	NA	NA
AXX01407.1|1047895_1049563_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	91.9	6.1e-312
>prophage 79
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1068337	1070386	4496886		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AXX01423.1|1068337_1070386_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	24.1	2.4e-30
>prophage 80
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1073815	1075237	4496886		Hokovirus(100.0%)	1	NA	NA
AXX01428.1|1073815_1075237_+	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	31.9	2.4e-58
>prophage 81
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1081938	1082730	4496886		Kaumoebavirus(100.0%)	1	NA	NA
AXX01436.1|1081938_1082730_+	endonuclease VIII	NA	A0A1V0CNR6	Kaumoebavirus	28.6	1.8e-10
>prophage 82
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1112130	1115706	4496886		Vibriophage(33.33%)	4	NA	NA
AXX01462.1|1112130_1112850_+	nicotinamide riboside transporter PnuC	NA	I6W764	Vibriophage	32.4	5.8e-24
AXX01463.1|1112846_1113809_-	zinc transporter ZitB	NA	A0A1V0SED0	Indivirus	41.3	2.3e-07
AXX01464.1|1113936_1114329_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01465.1|1114653_1115706_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B6VT43	Edwardsiella_phage	48.3	9.5e-84
>prophage 83
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1120110	1126632	4496886		Tupanvirus(33.33%)	7	NA	NA
AXX01470.1|1120110_1121127_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	45.6	2.6e-78
AXX01471.1|1121351_1122824_-	molybdate ABC transporter ATP-binding protein ModF	NA	A0A1M7XV31	Cedratvirus	29.0	3.0e-11
AXX01472.1|1122895_1123687_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AXX01473.1|1123815_1123965_+	multidrug efflux pump-associated protein, AcrZ family	NA	NA	NA	NA	NA
AXX01474.1|1124108_1124885_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXX01475.1|1124881_1125574_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AXX01476.1|1125573_1126632_+	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	33.2	7.0e-18
>prophage 84
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1131444	1132737	4496886		Klosneuvirus(100.0%)	1	NA	NA
AXX01482.1|1131444_1132737_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.1	7.7e-19
>prophage 85
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1136421	1137129	4496886		Staphylococcus_phage(100.0%)	1	NA	NA
AXX01487.1|1136421_1137129_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.6	2.7e-10
>prophage 86
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1140265	1141174	4496886		Streptococcus_phage(100.0%)	1	NA	NA
AXX01492.1|1140265_1141174_-	hypothetical protein	NA	A1IMD5	Streptococcus_phage	29.1	1.3e-25
>prophage 87
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1151017	1156077	4496886		Staphylococcus_phage(50.0%)	4	NA	NA
AXX01505.1|1151017_1152748_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	6.9e-23
AXX01506.1|1152734_1153736_-	secretion protein HlyD	NA	NA	NA	NA	NA
AXX01507.1|1153728_1154427_-	transcriptional regulator	NA	NA	NA	NA	NA
AXX01508.1|1154652_1156077_+	ATP-dependent RNA helicase RhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.0	1.8e-53
>prophage 88
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1162479	1164660	4496886		Bacillus_phage(100.0%)	1	NA	NA
AXX01513.1|1162479_1164660_+	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	26.3	2.4e-41
>prophage 89
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1171943	1172210	4496886		Serratia_phage(100.0%)	1	NA	NA
AXX01520.1|1171943_1172210_-	DksA/TraR family C4-type zinc finger protein	NA	A0A1Z1LZ52	Serratia_phage	51.7	2.9e-13
>prophage 90
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1176683	1181833	4496886		Planktothrix_phage(33.33%)	7	NA	NA
AXX01524.1|1176683_1177406_-	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.2	1.5e-35
AXX01525.1|1177402_1178062_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AXX01526.1|1178145_1178889_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AXX01527.1|1179022_1179208_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01528.1|1179264_1179768_-	DNA starvation/stationary phase protection protein	NA	A0A222YYG6	Streptomyces_phage	24.4	7.1e-05
AXX01529.1|1180083_1180971_-	threonine/homoserine exporter RhtA	NA	NA	NA	NA	NA
AXX01530.1|1181320_1181833_+	outer membrane protein OmpX	NA	A0A0P0ZE39	Stx2-converting_phage	36.6	3.0e-19
>prophage 91
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1191274	1195092	4496886		Tupanvirus(50.0%)	2	NA	NA
AXX01538.1|1191274_1192867_+	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	28.3	1.6e-58
AXX01539.1|1192947_1195092_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	35.1	1.3e-31
>prophage 92
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1203119	1204994	4496886		Planktothrix_phage(100.0%)	1	NA	NA
AXX01545.1|1203119_1204994_+	glutathione ABC transporter ATP-binding protein GsiA	NA	G9BWD6	Planktothrix_phage	28.1	5.0e-11
>prophage 93
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1212634	1214638	4496886		Stx2-converting_phage(50.0%)	2	NA	NA
AXX01552.1|1212634_1213846_+	serine-type D-Ala-D-Ala carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	48.2	4.4e-101
AXX01553.1|1213873_1214638_-	DNA-binding transcriptional repressor DeoR	NA	A0A077SK06	Escherichia_phage	30.0	1.6e-16
>prophage 94
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1226569	1234316	4496886		Synechococcus_phage(33.33%)	8	NA	NA
AXX01565.1|1226569_1227472_+	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7S9D1	Synechococcus_phage	34.4	3.9e-38
AXX01566.1|1227552_1228032_+	YbjN domain-containing protein	NA	NA	NA	NA	NA
AXX01567.1|1228390_1229503_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
AXX01568.1|1229642_1230776_+	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.4	2.5e-29
AXX01569.1|1230786_1231746_+	putrescine ABC transporter permease	NA	NA	NA	NA	NA
AXX01570.1|1231742_1232588_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
AXX01571.1|1232662_1233136_+	DUF2593 domain-containing protein	NA	NA	NA	NA	NA
AXX01572.1|1233188_1234316_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A1X9I6F4	Streptococcus_phage	27.8	1.9e-29
>prophage 95
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1237939	1238668	4496886		Planktothrix_phage(100.0%)	1	NA	NA
AXX01577.1|1237939_1238668_-	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	36.7	3.2e-30
>prophage 96
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1242926	1244645	4496886		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
AXX01583.1|1242926_1244645_-	ubiquinone-dependent pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	22.9	2.6e-30
>prophage 97
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1252924	1277579	4496886	tRNA,protease	uncultured_Mediterranean_phage(16.67%)	19	NA	NA
AXX01590.1|1252924_1254868_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	39.6	1.2e-36
AXX01591.1|1254932_1255163_-	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.7	6.3e-17
AXX01592.1|1255488_1255809_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	3.5e-13
AXX01593.1|1255837_1258111_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	3.6e-165
AXX01594.1|1258278_1258497_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AXX01595.1|1258772_1259477_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AXX01596.1|1259514_1261248_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	26.0	4.2e-20
AXX01597.1|1261248_1263015_-	thiol reductant ABC exporter subunit CydD	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.7	4.4e-09
AXX01598.1|1263130_1264099_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.7	2.0e-59
AXX01599.1|1264222_1264402_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01600.1|1264568_1265063_+	leucine-responsive regulatory protein	NA	NA	NA	NA	NA
AXX01601.1|1265182_1269334_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	49.2	3.9e-88
AXX01602.1|1269523_1270138_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AXX01603.1|1270150_1271494_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	42.0	4.8e-80
AXX01604.1|1271590_1272883_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.6	3.5e-96
AXX01605.1|1273000_1273180_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01606.1|1273178_1274327_+	MFS transporter	NA	NA	NA	NA	NA
AXX01607.1|1274360_1275101_-	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.4	9.5e-22
AXX01608.1|1275296_1277579_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.9	3.8e-162
>prophage 98
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1281651	1282737	4496886		Streptococcus_phage(100.0%)	1	NA	NA
AXX01612.1|1281651_1282737_+	3-phosphoserine/phosphohydroxythreonine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.2	9.1e-82
>prophage 99
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1286855	1291388	4496886		Bacillus_phage(100.0%)	3	NA	NA
AXX01616.1|1286855_1287140_+	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	4.1e-10
AXX01617.1|1287344_1289603_+	ComEC family protein	NA	NA	NA	NA	NA
AXX01618.1|1289639_1291388_+	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	31.1	3.5e-59
>prophage 100
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1309591	1312627	4496886	tRNA	Enterobacteria_phage(50.0%)	2	NA	NA
AXX01634.1|1309591_1310692_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	52.8	6.4e-99
AXX01635.1|1311226_1312627_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	38.1	1.3e-80
>prophage 101
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1317356	1318124	4496886		Bacillus_virus(100.0%)	1	NA	NA
AXX01638.1|1317356_1318124_-	aliphatic sulfonates ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	1.3e-29
>prophage 102
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1326900	1328805	4496886		Tupanvirus(100.0%)	1	NA	NA
AXX01646.1|1326900_1328805_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.4	6.2e-49
>prophage 103
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1341377	1343432	4496886		Bacillus_phage(100.0%)	1	NA	NA
AXX01659.1|1341377_1343432_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	25.4	2.4e-14
>prophage 104
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1346864	1347524	4496886		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXX01665.1|1346864_1347524_-	transmembrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	54.4	2.0e-47
>prophage 105
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1356697	1358811	4496886		Enterobacteria_phage(100.0%)	3	NA	NA
AXX01674.1|1356697_1356871_+	stress-induced protein	NA	Q9KX95	Enterobacteria_phage	88.9	3.2e-05
AXX01675.1|1356955_1358293_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	86.0	7.8e-200
AXX01676.1|1358310_1358811_-	FMN reductase	NA	Q9KX93	Enterobacteria_phage	67.7	3.6e-33
>prophage 106
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1376369	1377437	4496886		Erwinia_phage(100.0%)	1	NA	NA
AXX01692.1|1376369_1377437_+	phosphate starvation-inducible protein PhoH	NA	A0A1B2ICF6	Erwinia_phage	74.5	4.0e-90
>prophage 107
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1390064	1390607	4496886		Red_sea_bream_iridovirus(100.0%)	1	NA	NA
AXX01702.1|1390064_1390607_+	O-acetyl-ADP-ribose deacetylase	NA	F1SVT2	Red_sea_bream_iridovirus	42.0	6.1e-26
>prophage 108
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1398391	1399312	4496886		Morganella_phage(100.0%)	1	NA	NA
AXX01707.1|1398391_1399312_-	lipid A biosynthesis lauroyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	41.2	4.3e-56
>prophage 109
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1403928	1404174	4496886		Enterobacteria_phage(100.0%)	1	NA	NA
AXX01714.1|1403928_1404174_-	DNA damage-inducible protein I	NA	K7PM44	Enterobacteria_phage	48.7	1.5e-13
>prophage 110
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1420148	1421114	4496886		Brevibacillus_phage(100.0%)	1	NA	NA
AXX01734.1|1420148_1421114_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	S5M633	Brevibacillus_phage	32.5	2.6e-11
>prophage 111
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1436348	1437474	4496886		Trichoplusia_ni_ascovirus(50.0%)	2	NA	NA
AXX01747.1|1436348_1437083_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.1	5.9e-16
AXX01748.1|1437237_1437474_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	45.2	1.5e-10
>prophage 112
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1440739	1442385	4496886		Pseudomonas_phage(50.0%)	2	NA	NA
AXX01752.1|1440739_1441378_+	thymidylate kinase	NA	Q2Z0N0	Pseudomonas_phage	37.2	8.4e-27
AXX01753.1|1441377_1442385_+	DNA polymerase III subunit delta'	NA	A0A1U9WR94	Streptococcus_virus	42.5	1.7e-05
>prophage 113
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1461464	1469241	4496886		Planktothrix_phage(25.0%)	8	NA	NA
AXX01770.1|1461464_1462169_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	43.2	3.6e-39
AXX01771.1|1462168_1463413_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
AXX01772.1|1463428_1464349_+	N-acetylglucosamine kinase	NA	NA	NA	NA	NA
AXX01773.1|1464350_1465175_+	NAD-dependent protein deacylase	NA	A0A2I7S9Y2	Vibrio_phage	33.9	1.4e-21
AXX01774.1|1465399_1466446_-	spermidine/putrescine ABC transporter substrate-binding protein PotD	NA	NA	NA	NA	NA
AXX01775.1|1466442_1467255_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA	NA
AXX01776.1|1467251_1468109_-	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	25.0	4.3e-10
AXX01777.1|1468092_1469241_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	G3M9Y6	Bacillus_virus	35.9	2.0e-31
>prophage 114
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1474545	1475916	4496886		Bodo_saltans_virus(100.0%)	1	NA	NA
AXX01783.1|1474545_1475916_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.5	3.2e-108
>prophage 115
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1481366	1486528	4496886		Phage_21(50.0%)	6	NA	NA
AXX01789.1|1481366_1482617_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	94.4	3.6e-21
AXX01790.1|1482984_1483359_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01791.1|1483355_1483703_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AXX01792.1|1484041_1484458_+	VOC family protein	NA	NA	NA	NA	NA
AXX01793.1|1484583_1485519_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXX01794.1|1485589_1486528_+	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	24.5	3.7e-07
>prophage 116
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1492612	1494899	4496886		Morganella_phage(50.0%)	4	NA	NA
AXX01800.1|1492612_1492825_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	77.1	1.7e-24
AXX01801.1|1492808_1493033_+	cold-shock protein	NA	NA	NA	NA	NA
AXX01802.1|1493149_1493386_-	hypothetical protein	NA	NA	NA	NA	NA
AXX01803.1|1493930_1494899_+	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	27.7	1.1e-30
>prophage 117
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1504385	1505669	4496886		Bacillus_phage(100.0%)	1	NA	NA
AXX01816.1|1504385_1505669_-	hypothetical protein	NA	A0A140HLI1	Bacillus_phage	27.4	1.9e-09
>prophage 118
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1512138	1512780	4496886		Tupanvirus(100.0%)	1	NA	NA
AXX01823.1|1512138_1512780_-	bifunctional nicotinamidase/pyrazinamidase	NA	A0A2K9L2K0	Tupanvirus	34.6	3.2e-18
>prophage 119
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1517681	1522901	4496886		Streptococcus_phage(50.0%)	5	NA	NA
AXX01828.1|1517681_1519628_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	31.8	1.7e-41
AXX01829.1|1519729_1520011_+	DUF1496 domain-containing protein	NA	NA	NA	NA	NA
AXX01830.1|1519970_1520384_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
AXX01831.1|1520432_1521239_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
AXX01832.1|1521680_1522901_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.9	1.4e-25
>prophage 120
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1531222	1539382	4496886		Escherichia_phage(50.0%)	10	NA	NA
AXX01841.1|1531222_1532050_-	NAD(+) synthetase	NA	G3MA24	Bacillus_virus	54.9	2.0e-73
AXX01842.1|1532292_1532634_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AXX01843.1|1532746_1535002_-	catalase HPII	NA	A0A2K9L572	Tupanvirus	50.8	2.1e-144
AXX01844.1|1535213_1535444_+	cell division activator CedA	NA	NA	NA	NA	NA
AXX01845.1|1535607_1535790_+	hypothetical protein	NA	A0A222YWE2	Escherichia_phage	70.0	4.4e-13
AXX01846.1|1535731_1535911_+	hypothetical protein	NA	A0A222YWE2	Escherichia_phage	77.8	6.8e-19
AXX01847.1|1535943_1536285_+	addiction module antidote protein, HigA family	NA	A0A222YWD7	Escherichia_phage	77.5	1.9e-41
AXX01848.1|1536396_1537788_-	L-cystine transporter	NA	NA	NA	NA	NA
AXX01849.1|1537922_1538513_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AXX01850.1|1538626_1539382_-	2-deoxy-D-gluconate 3-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.6	3.7e-13
>prophage 121
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1545255	1572985	4496886	tRNA	Tupanvirus(15.38%)	26	NA	NA
AXX01857.1|1545255_1546761_+	proline/glycine betaine transporter ProP	NA	Q6JIH2	Burkholderia_virus	31.5	8.3e-57
AXX01858.1|1546937_1547387_+	hypothetical protein	NA	NA	NA	NA	NA
AXX01859.1|1547593_1548103_+	ecotin	NA	NA	NA	NA	NA
AXX01860.1|1548274_1548721_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXX01861.1|1548731_1549652_-	alpha/beta hydrolase	NA	A0A2K9L5W3	Tupanvirus	56.0	8.2e-07
AXX01862.1|1549872_1550793_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXX01863.1|1550884_1551361_+	N-acetyltransferase	NA	NA	NA	NA	NA
AXX01864.1|1551689_1553618_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.6	1.1e-130
AXX01865.1|1553621_1554164_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.3	1.1e-14
AXX01866.1|1554261_1554459_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AXX01867.1|1554506_1554863_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AXX01868.1|1555248_1556232_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	42.6	6.4e-34
AXX01869.1|1556247_1558635_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	27.1	7.3e-07
AXX01870.1|1558639_1558939_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
AXX04568.1|1559016_1560018_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA	NA
AXX01871.1|1560047_1560599_+	glutathione peroxidase	NA	NA	NA	NA	NA
AXX01872.1|1560601_1561345_+	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	28.0	7.1e-09
AXX01873.1|1561422_1561887_+	endopeptidase	NA	S5MM68	Bacillus_phage	36.0	1.0e-10
AXX01874.1|1562079_1563417_+	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
AXX01875.1|1563413_1564730_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
AXX01876.1|1564793_1565783_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	34.7	1.1e-36
AXX01877.1|1565934_1566654_+	cyclic di-GMP regulator CdgR	NA	NA	NA	NA	NA
AXX01878.1|1566715_1568164_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	33.5	2.9e-51
AXX01879.1|1568239_1569286_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B5IW14	Pandoravirus	49.3	5.3e-87
AXX01880.1|1569440_1570274_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AXX01881.1|1570606_1572985_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	36.3	1.1e-172
>prophage 122
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1584347	1589451	4496886		uncultured_virus(33.33%)	5	NA	NA
AXX01887.1|1584347_1584725_+	Fe-S cluster assembly scaffold SufA	NA	A0A218MM00	uncultured_virus	40.0	8.8e-16
AXX01888.1|1584727_1586218_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
AXX01889.1|1586238_1586985_+	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	30.3	7.1e-09
AXX01890.1|1586959_1588234_+	signal peptide peptidase SppA	NA	NA	NA	NA	NA
AXX01891.1|1588230_1589451_+	cysteine desulfurase SufS	NA	Q2XUY6	environmental_halophage	43.6	1.0e-97
>prophage 123
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1632358	1634506	4496886		Escherichia_phage(100.0%)	1	NA	NA
AXX01925.1|1632358_1634506_+	formate dehydrogenase subunit alpha	NA	A0A077SK27	Escherichia_phage	24.6	4.1e-25
>prophage 124
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1638582	1645306	4496886	holin	Catovirus(33.33%)	5	NA	NA
AXX01931.1|1638582_1640262_-|holin	oxygen-dependent choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	30.5	2.1e-56
AXX01932.1|1640289_1641762_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
AXX01933.1|1641761_1642370_-	transcriptional regulator	NA	NA	NA	NA	NA
AXX01934.1|1642621_1644652_+|holin	high-affinity choline transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	27.9	7.6e-21
AXX01935.1|1644745_1645306_-	ATPase	NA	A0A219VHB7	Ochrobactrum_phage	51.2	9.7e-19
>prophage 125
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1663069	1663720	4496886		Orpheovirus(100.0%)	1	NA	NA
AXX01947.1|1663069_1663720_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.8	4.4e-23
>prophage 126
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1667654	1675030	4496886		Tupanvirus(33.33%)	7	NA	NA
AXX01950.1|1667654_1668803_-	cyclopropane-fatty-acyl-phospholipid synthase	NA	A0A2K9L4K8	Tupanvirus	46.3	7.9e-84
AXX01951.1|1669091_1670267_-	Bcr/CflA family multidrug efflux MFS transporter	NA	NA	NA	NA	NA
AXX01952.1|1670378_1671290_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXX01953.1|1671307_1672333_-	PurR family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	30.7	6.9e-31
AXX01954.1|1672624_1672714_+	YnhF family membrane protein	NA	NA	NA	NA	NA
AXX01955.1|1672976_1674143_+	MFS transporter	NA	NA	NA	NA	NA
AXX01956.1|1674211_1675030_-	peptidoglycan endopeptidase	NA	A0A2H5BM69	Streptomyces_phage	42.5	4.9e-19
>prophage 127
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1681978	1682497	4496886		Salmonella_phage(100.0%)	1	NA	NA
AXX01965.1|1681978_1682497_+	superoxide dismutase [Cu-Zn] SodC2	NA	Q9MC02	Salmonella_phage	59.3	1.7e-49
>prophage 128
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1689478	1690753	4496886	tRNA	Cronobacter_phage(100.0%)	1	NA	NA
AXX01974.1|1689478_1690753_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.5	7.2e-86
>prophage 129
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1725153	1728242	4496886		Bacillus_phage(50.0%)	3	NA	NA
AXX02004.1|1725153_1726446_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	25.5	1.3e-18
AXX02005.1|1726472_1727378_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AXX02006.1|1727489_1728242_+	3-oxoacyl-ACP reductase	NA	A0A0M4JSW6	Mollivirus	27.5	1.1e-12
>prophage 130
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1737946	1738462	4496886		Streptococcus_phage(100.0%)	1	NA	NA
AXX02014.1|1737946_1738462_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	52.5	2.7e-23
>prophage 131
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1742808	1744419	4496886		Planktothrix_phage(100.0%)	1	NA	NA
AXX02019.1|1742808_1744419_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	5.8e-16
>prophage 132
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1759368	1760382	4496886		Mycoplasma_phage(100.0%)	1	NA	NA
AXX02033.1|1759368_1760382_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	54.8	6.2e-24
>prophage 133
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1763711	1764852	4496886	transposase	Human_immunodeficiency_virus(50.0%)	2	NA	NA
AXX04573.1|1763711_1763834_+	sugar kinase	NA	Q6QLL3	Human_immunodeficiency_virus	97.2	3.8e-13
AXX02037.1|1763871_1764852_-|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	2.8e-186
>prophage 134
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1770581	1773582	4496886		Escherichia_phage(100.0%)	2	NA	NA
AXX02044.1|1770581_1772966_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	39.0	4.4e-145
AXX02045.1|1772952_1773582_+	dimethylsulfoxide reductase, chain B	NA	A0A077SL61	Escherichia_phage	53.8	7.0e-58
>prophage 135
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1792894	1794508	4496886		Planktothrix_phage(100.0%)	1	NA	NA
AXX02062.1|1792894_1794508_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.0	3.5e-13
>prophage 136
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1806369	1812137	4496886		Escherichia_phage(50.0%)	6	NA	NA
AXX02073.1|1806369_1806648_+	Killer protein	NA	A0A2L1IV28	Escherichia_phage	57.6	1.4e-26
AXX02074.1|1806647_1806935_+	addiction module antidote protein, HigA family	NA	A0A2L1IV52	Escherichia_phage	51.6	2.2e-19
AXX02075.1|1806989_1809107_-	TonB-dependent siderophore receptor	NA	A0A1B0VCF0	Salmonella_phage	67.1	8.2e-135
AXX02076.1|1809383_1810442_+	YncE family protein	NA	NA	NA	NA	NA
AXX02077.1|1810471_1811338_-	ABC transporter permease	NA	NA	NA	NA	NA
AXX02078.1|1811297_1812137_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	43.7	3.7e-38
>prophage 137
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1824096	1831981	4496886		Tupanvirus(33.33%)	10	NA	NA
AXX02090.1|1824096_1825182_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	44.2	1.7e-88
AXX02091.1|1825237_1826002_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXX02092.1|1826454_1826847_+	TfoX-like protein	NA	NA	NA	NA	NA
AXX02093.1|1827032_1827626_-	flavin reductase	NA	NA	NA	NA	NA
AXX02094.1|1827689_1828454_-	hypothetical protein	NA	A0A0M4R2T6	Salmonella_phage	28.1	1.9e-17
AXX02095.1|1828455_1828653_-	hypothetical protein	NA	NA	NA	NA	NA
AXX02096.1|1828704_1828947_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02097.1|1828949_1829687_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXX02098.1|1829872_1830808_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXX02099.1|1831006_1831981_-	UV damage endonuclease UvsE	NA	A0A1S6L3I6	Erwinia_phage	51.6	1.1e-91
>prophage 138
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1836597	1837167	4496886		Bacillus_phage(100.0%)	1	NA	NA
AXX02106.1|1836597_1837167_-	lipoprotein nlpC	NA	A0A217EQL1	Bacillus_phage	35.6	3.4e-11
>prophage 139
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1846426	1849108	4496886		Hokovirus(100.0%)	1	NA	NA
AXX02115.1|1846426_1849108_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.5	1.9e-59
>prophage 140
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1858640	1861299	4496886		Bacillus_virus(50.0%)	2	NA	NA
AXX04576.1|1858640_1859633_-	sensor domain-containing diguanylate cyclase	NA	G3MA91	Bacillus_virus	31.5	3.0e-15
AXX02122.1|1859856_1861299_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.1	5.0e-19
>prophage 141
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1871504	1886802	4496886		Caulobacter_phage(25.0%)	16	NA	NA
AXX02131.1|1871504_1871879_+	MDR efflux pump AcrAB transcriptional activator MarA	NA	D0R0F8	Streptococcus_phage	33.3	4.2e-10
AXX02132.1|1871949_1872162_+	multiple antibiotic resistance protein MarB	NA	NA	NA	NA	NA
AXX02133.1|1872187_1873084_-	O-acetylserine/cysteine exporter	NA	NA	NA	NA	NA
AXX02134.1|1873291_1874485_+	transporter	NA	NA	NA	NA	NA
AXX02135.1|1874843_1875134_+	hypothetical protein	NA	S5FM71	Shigella_phage	52.0	3.0e-08
AXX02136.1|1876307_1877549_-	tellurium resistance protein TerF	NA	NA	NA	NA	NA
AXX02137.1|1877873_1878449_-	TerD family protein	NA	K4JRX3	Caulobacter_phage	39.1	1.6e-29
AXX02138.1|1878518_1879097_-	tellurium resistance protein TerD	NA	A0A2P1N0L4	Streptomyces_phage	40.0	2.5e-06
AXX02139.1|1879145_1880186_-	tellurium resistance protein TerC	NA	K7QKE8	Escherichia_phage	47.7	1.7e-77
AXX02140.1|1880208_1880664_-	Tellurium resistance protein TerB	NA	NA	NA	NA	NA
AXX02141.1|1880686_1881844_-	tellurium resistance protein TerA	NA	NA	NA	NA	NA
AXX02142.1|1881843_1882425_-	tellurium resistance protein TerZ	NA	K4JRX3	Caulobacter_phage	31.5	2.2e-13
AXX04579.1|1882744_1883803_+	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
AXX02143.1|1883812_1884955_+	adenine/guanine phosphoribosyltransferase	NA	A0A172Q0Y1	Acinetobacter_phage	34.1	2.5e-29
AXX02144.1|1884947_1885721_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02145.1|1885722_1886802_+	hypothetical protein	NA	A0A172Q0S8	Acinetobacter_phage	34.4	2.1e-38
>prophage 142
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1898963	1900469	4496886		Bacillus_virus(50.0%)	2	NA	NA
AXX02156.1|1898963_1899662_-	urea ABC transporter ATP-binding subunit UrtE	NA	G3M9Y6	Bacillus_virus	27.4	8.6e-17
AXX02157.1|1899671_1900469_-	urea ABC transporter ATP-binding protein UrtD	NA	A0A2R8FG22	Brazilian_cedratvirus	25.7	1.7e-08
>prophage 143
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1911782	1937911	4496886		Escherichia_phage(27.27%)	27	NA	NA
AXX02166.1|1911782_1912886_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	49.5	2.7e-105
AXX04581.1|1913095_1913869_-	DUF1264 domain-containing protein	NA	NA	NA	NA	NA
AXX02167.1|1913982_1914153_-	stress-induced protein	NA	Q9KX95	Enterobacteria_phage	88.9	5.3e-05
AXX02168.1|1914711_1915623_+	chloride channel protein	NA	NA	NA	NA	NA
AXX02169.1|1915786_1916590_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXX02170.1|1916913_1918959_-	peptidyl-dipeptidase Dcp	NA	A0A1V0SIU1	Klosneuvirus	23.3	6.5e-20
AXX02171.1|1919118_1919865_+	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA	NA
AXX02172.1|1919953_1920640_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXX02173.1|1920679_1921573_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02174.1|1921697_1921901_+	putative selenium delivery protein YdfZ	NA	J9Q802	Salmonella_phage	61.2	3.6e-16
AXX02175.1|1922056_1923523_-	fructuronate reductase	NA	H8ZJP8	Ostreococcus_tauri_virus	31.2	8.1e-41
AXX02176.1|1923688_1924966_-	MFS transporter	NA	NA	NA	NA	NA
AXX02177.1|1925024_1926239_-	D-galactonate dehydratase family protein	NA	Q6A202	Oenococcus_phage	31.3	6.7e-49
AXX02178.1|1926394_1926721_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	54.5	1.6e-21
AXX02179.1|1926836_1927166_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02180.1|1927232_1927793_+	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
AXX04582.1|1927845_1928553_-	YnfC family lipoprotein	NA	NA	NA	NA	NA
AXX02181.1|1928669_1928966_+	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
AXX02182.1|1929246_1931682_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	50.0	1.1e-212
AXX02183.1|1931691_1932309_+	dimethylsulfoxide reductase, chain B	NA	A0A077SL61	Escherichia_phage	61.1	5.0e-77
AXX02184.1|1932310_1933159_+	dimethylsulfoxide reductase	NA	NA	NA	NA	NA
AXX02185.1|1933204_1933813_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	36.3	1.1e-28
AXX04583.1|1933809_1934145_-	GlpM family protein	NA	NA	NA	NA	NA
AXX02186.1|1934473_1935187_+	osmoprotectant ABC transporter permease OsmY	NA	NA	NA	NA	NA
AXX02187.1|1935203_1936109_+	osmoprotectant ABC transporter substrate-binding protein OsmX	NA	NA	NA	NA	NA
AXX02188.1|1936118_1936766_+	osmoprotectant ABC transporter permease OsmW	NA	NA	NA	NA	NA
AXX02189.1|1936765_1937911_+	osmoprotectant ABC transporter ATP-binding protein OsmV	NA	G9BWD6	Planktothrix_phage	32.3	1.1e-24
>prophage 144
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1946980	1950836	4496886	protease	Salmonella_phage(33.33%)	3	NA	NA
AXX02199.1|1946980_1948249_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	64.8	2.3e-153
AXX02200.1|1948250_1948670_-	translesion error-prone DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	54.5	3.0e-33
AXX02201.1|1948871_1950836_-|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	27.1	1.1e-21
>prophage 145
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1966464	1970550	4496886		Synechococcus_phage(50.0%)	5	NA	NA
AXX02216.1|1966464_1967583_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.1	5.2e-32
AXX02217.1|1967614_1967890_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA	NA
AXX02218.1|1968149_1968509_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02219.1|1968530_1969856_-	MFS transporter	NA	NA	NA	NA	NA
AXX02220.1|1970019_1970550_-	cytochrome B	NA	A0A0U2QLA7	Escherichia_phage	43.0	1.6e-18
>prophage 146
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1979927	1985593	4496886	transposase	Bacillus_phage(50.0%)	3	NA	NA
AXX02230.1|1979927_1980584_+	O-methyltransferase	NA	W8CYT3	Bacillus_phage	50.4	8.4e-30
AXX02231.1|1980850_1981369_-|transposase	transposase	transposase	NA	NA	NA	NA
AXX02232.1|1981687_1985593_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SIV3	Klosneuvirus	29.4	6.5e-53
>prophage 147
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1990242	1991232	4496886		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AXX02238.1|1990242_1991232_+	2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	43.1	3.1e-68
>prophage 148
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	1996992	1998024	4496886		Tupanvirus(100.0%)	1	NA	NA
AXX02243.1|1996992_1998024_-	alcohol dehydrogenase AdhP	NA	A0A2K9L7I1	Tupanvirus	31.6	5.9e-38
>prophage 149
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2002722	2009089	4496886	tRNA	Trichoplusia_ni_ascovirus(33.33%)	9	NA	NA
AXX02247.1|2002722_2003580_-	SDR family NAD(P)-dependent oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	48.6	6.1e-65
AXX02248.1|2003983_2005096_-	endonuclease/exonuclease/phosphatase	NA	NA	NA	NA	NA
AXX02249.1|2005183_2005375_-	hypothetical protein	NA	NA	NA	NA	NA
AXX02250.1|2005381_2006314_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	94.2	3.4e-141
AXX02251.1|2006820_2007804_-	zinc transporter ZntB	NA	NA	NA	NA	NA
AXX02252.1|2007843_2008047_-	hypothetical protein	NA	NA	NA	NA	NA
AXX02253.1|2008125_2008299_-	DUF2566 domain-containing protein	NA	NA	NA	NA	NA
AXX02254.1|2008500_2008824_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02255.1|2008897_2009089_+	hypothetical protein	NA	I6S5X8	Salmonella_phage	46.6	2.9e-07
>prophage 150
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2024280	2025363	4496886		Indivirus(100.0%)	1	NA	NA
AXX02269.1|2024280_2025363_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.3	9.9e-12
>prophage 151
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2042494	2044295	4496886		Planktothrix_phage(50.0%)	2	NA	NA
AXX02286.1|2042494_2043487_+	peptide ABC transporter ATP-binding protein SapD	NA	G9BWD6	Planktothrix_phage	25.3	2.1e-08
AXX02287.1|2043488_2044295_+	peptide ABC transporter ATP-binding protein SapF	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	1.1e-12
>prophage 152
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2048866	2056296	4496886		Bacillus_virus(33.33%)	6	NA	NA
AXX02291.1|2048866_2050861_+	cyclic di-GMP phosphodiesterase	NA	G3MA91	Bacillus_virus	33.5	4.1e-19
AXX02292.1|2050882_2051752_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AXX02293.1|2051963_2052146_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02294.1|2052159_2052822_-	fructose-6-phosphate aldolase	NA	A0A1Z1LWE4	Synechococcus_phage	29.7	5.3e-24
AXX02295.1|2052958_2053858_+	glycyl-radical enzyme activating protein	NA	NA	NA	NA	NA
AXX02296.1|2053863_2056296_+	formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme	NA	A0A2K8HAT8	Bacteriophage	47.4	1.8e-08
>prophage 153
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2061573	2062167	4496886		Staphylococcus_phage(100.0%)	1	NA	NA
AXX02302.1|2061573_2062167_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	48.9	6.0e-43
>prophage 154
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2067149	2072544	4496886	protease	Tupanvirus(33.33%)	4	NA	NA
AXX02306.1|2067149_2069747_-	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	35.9	1.5e-93
AXX02307.1|2070147_2070399_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02308.1|2070474_2071524_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	31.5	4.8e-19
AXX02309.1|2071782_2072544_+	YciK family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	21.2	6.3e-05
>prophage 155
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2077732	2080690	4496886		Acinetobacter_phage(100.0%)	2	NA	NA
AXX02315.1|2077732_2079328_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	NA	A0A0N7IRD9	Acinetobacter_phage	38.0	8.0e-50
AXX02316.1|2079331_2080690_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	41.4	1.5e-36
>prophage 156
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2093336	2096234	4496886		Lactobacillus_phage(33.33%)	3	NA	NA
AXX02333.1|2093336_2094173_-	transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	35.5	5.2e-08
AXX02334.1|2094219_2095224_-	oligopeptide ABC transporter ATP-binding protein OppF	NA	G3M9Y6	Bacillus_virus	30.2	2.6e-14
AXX02335.1|2095220_2096234_-	oligopeptide ABC transporter ATP-binding protein OppD	NA	G9BWD6	Planktothrix_phage	28.9	9.9e-14
>prophage 157
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2104745	2112640	4496886		Bacillus_phage(33.33%)	8	NA	NA
AXX02342.1|2104745_2105351_-	thymidine kinase	NA	A0A0A0YP64	Citrobacter_phage	54.5	7.7e-54
AXX02343.1|2105892_2106306_+	DNA-binding transcriptional regulator H-NS	NA	NA	NA	NA	NA
AXX02344.1|2106420_2107434_-	protein CapI	NA	A0A0P0YMS6	Yellowstone_lake_phycodnavirus	27.5	2.1e-27
AXX02345.1|2107448_2108789_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	38.7	7.3e-81
AXX02346.1|2108810_2109719_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	46.9	7.0e-59
AXX02347.1|2109920_2110934_-	two-component system response regulator RssB	NA	Q56AR1	Bacillus_thuringiensis_phage	34.7	2.5e-09
AXX02348.1|2111288_2111747_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02349.1|2111797_2112640_+	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	46.3	3.1e-13
>prophage 158
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2116885	2118421	4496886		Escherichia_phage(100.0%)	1	NA	NA
AXX02354.1|2116885_2118421_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.2	1.8e-19
>prophage 159
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2135549	2136338	4496886		Bacillus_virus(100.0%)	1	NA	NA
AXX02362.1|2135549_2136338_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.9	4.8e-32
>prophage 160
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2146051	2150094	4496886		Cafeteria_roenbergensis_virus(50.0%)	5	NA	NA
AXX02373.1|2146051_2146906_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	38.0	6.0e-44
AXX02374.1|2146946_2147756_-	hypothetical protein	NA	NA	NA	NA	NA
AXX02375.1|2147752_2148148_-	siroheme synthase	NA	NA	NA	NA	NA
AXX02376.1|2148154_2149012_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AXX02377.1|2149011_2150094_-	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	41.6	2.5e-07
>prophage 161
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2153204	2155953	4496886		Tupanvirus(50.0%)	2	NA	NA
AXX04591.1|2153204_2154152_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	37.8	7.8e-45
AXX02380.1|2154273_2155953_+	C4-dicarboxylic acid transporter DauA	NA	A0A2H4J153	uncultured_Caudovirales_phage	23.8	1.3e-21
>prophage 162
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2162879	2163587	4496886		Pseudomonas_phage(100.0%)	1	NA	NA
AXX02388.1|2162879_2163587_-	hypothetical protein	NA	A0A059VF66	Pseudomonas_phage	42.7	1.1e-38
>prophage 163
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2190133	2195325	4496886	tRNA	Staphylococcus_phage(50.0%)	4	NA	NA
AXX02412.1|2190133_2191852_-	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQM9	Staphylococcus_phage	27.3	5.4e-36
AXX02413.1|2192024_2192609_-	hypothetical protein	NA	NA	NA	NA	NA
AXX02414.1|2192649_2193345_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AXX02415.1|2193414_2195325_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.8	6.5e-91
>prophage 164
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2204234	2205599	4496886		Pandoravirus(100.0%)	1	NA	NA
AXX04595.1|2204234_2205599_+	aminodeoxychorismate synthase component 1	NA	S4VT78	Pandoravirus	41.1	8.1e-43
>prophage 165
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2209449	2211009	4496886		Moraxella_phage(100.0%)	1	NA	NA
AXX02429.1|2209449_2211009_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	44.0	1.9e-40
>prophage 166
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2216586	2216796	4496886		Morganella_phage(100.0%)	1	NA	NA
AXX02436.1|2216586_2216796_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	79.7	5.3e-23
>prophage 167
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2221575	2223624	4496886		Moraxella_phage(100.0%)	1	NA	NA
AXX02445.1|2221575_2223624_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.3	2.1e-87
>prophage 168
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2231132	2231777	4496886		Enterobacteria_phage(100.0%)	1	NA	NA
AXX02452.1|2231132_2231777_-	serine/threonine-protein phosphatase	NA	K7P6H8	Enterobacteria_phage	51.2	1.9e-58
>prophage 169
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2235638	2238664	4496886		Pectobacterium_phage(50.0%)	3	NA	NA
AXX02457.1|2235638_2235869_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	64.7	1.1e-16
AXX02458.1|2235941_2236604_+	exodeoxyribonuclease X	NA	NA	NA	NA	NA
AXX02459.1|2236600_2238664_-	oligopeptidase B	NA	A0A1V0SHT0	Klosneuvirus	28.6	7.7e-37
>prophage 170
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2244752	2246228	4496886		Cyanophage(100.0%)	1	NA	NA
AXX02467.1|2244752_2246228_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	36.4	8.3e-78
>prophage 171
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2250181	2262446	4496886	tRNA	Listeria_phage(14.29%)	14	NA	NA
AXX02471.1|2250181_2251513_-	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	38.0	4.1e-15
AXX04596.1|2251528_2252488_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXX02472.1|2252551_2253307_+	zinc ABC transporter ATP-binding protein ZnuC	NA	R4TX06	Phaeocystis_globosa_virus	33.7	3.7e-13
AXX02473.1|2253303_2254089_+	zinc ABC transporter permease	NA	NA	NA	NA	NA
AXX02474.1|2254173_2255184_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.0	5.6e-09
AXX02475.1|2255192_2255804_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AXX02476.1|2255949_2256471_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	34.2	1.2e-10
AXX02477.1|2256559_2257300_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AXX02478.1|2257327_2257771_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
AXX02479.1|2257772_2259551_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	29.1	2.8e-11
AXX02480.1|2259817_2260384_+	hydrolase	NA	NA	NA	NA	NA
AXX02481.1|2260380_2261199_+	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	78.7	1.4e-55
AXX02482.1|2261266_2261662_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02483.1|2261702_2262446_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	29.6	3.9e-23
>prophage 172
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2265685	2273897	4496886	tRNA	Hokovirus(33.33%)	7	NA	NA
AXX02487.1|2265685_2267386_-	molecular chaperone HscC	NA	A0A1V0SH73	Hokovirus	35.7	1.5e-83
AXX02488.1|2267585_2268326_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AXX02489.1|2268411_2269563_+	putative C-S lyase	NA	NA	NA	NA	NA
AXX02490.1|2269552_2270719_-	glutathione-dependent formaldehyde dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	25.9	2.6e-13
AXX02491.1|2270722_2271265_-	cyclase	NA	NA	NA	NA	NA
AXX02492.1|2271414_2271978_-	VOC family protein	NA	NA	NA	NA	NA
AXX02493.1|2272163_2273897_+|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L6Z2	Tupanvirus	33.3	4.1e-84
>prophage 173
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2282597	2284054	4496886		Bacillus_thuringiensis_phage(100.0%)	2	NA	NA
AXX02502.1|2282597_2282987_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.0	2.0e-07
AXX02503.1|2283004_2284054_-	chemotaxis response regulator protein-glutamate methylesterase	NA	Q56AR1	Bacillus_thuringiensis_phage	32.8	7.9e-06
>prophage 174
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2302674	2304189	4496886		Staphylococcus_phage(100.0%)	1	NA	NA
AXX02522.1|2302674_2304189_-	L-arabinose ABC transporter ATP-binding protein AraG	NA	A0A2H4PQG7	Staphylococcus_phage	28.5	1.8e-14
>prophage 175
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2323952	2324705	4496886		Bacillus_virus(100.0%)	1	NA	NA
AXX02545.1|2323952_2324705_-	L-cystine ABC transporter ATP-binding protein YecC	NA	G3M9Y6	Bacillus_virus	35.2	7.6e-27
>prophage 176
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2344896	2345580	4496886		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXX02565.1|2344896_2345580_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	60.5	9.2e-80
>prophage 177
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2349219	2349909	4496886		Streptococcus_phage(100.0%)	1	NA	NA
AXX02568.1|2349219_2349909_-	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	29.1	2.0e-13
>prophage 178
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2368778	2373615	4496886		Burkholderia_phage(40.0%)	5	NA	NA
AXX02589.1|2368778_2369276_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	49.0	1.2e-33
AXX02590.1|2369259_2370705_-	DNA (cytosine-5-)-methyltransferase	NA	E5E3X6	Burkholderia_phage	53.4	2.4e-101
AXX02591.1|2370753_2371452_-	phosphohydrolase	NA	S4W232	Pandoravirus	26.3	1.3e-07
AXX02592.1|2372097_2373222_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	56.5	3.6e-105
AXX02593.1|2373375_2373615_+	DinI family protein	NA	K7PKM2	Enterobacterial_phage	84.8	5.5e-32
>prophage 179
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2388215	2394486	4496886		Erysipelothrix_phage(66.67%)	3	NA	NA
AXX02603.1|2388215_2389514_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	38.5	7.4e-70
AXX02604.1|2389665_2391516_+	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	38.1	2.0e-100
AXX02605.1|2391525_2394486_+	restriction endonuclease subunit R	NA	A0A2K5B2C2	Erysipelothrix_phage	38.4	1.6e-160
>prophage 180
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2400435	2401556	4496886	transposase	Leptospira_phage(100.0%)	1	NA	NA
AXX02612.1|2400435_2401556_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.0	7.3e-50
>prophage 181
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2406897	2407113	4496886		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXX02619.1|2406897_2407113_-	AlpA family transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	50.0	6.5e-08
>prophage 182
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2417627	2420189	4496886		Stx2-converting_phage(50.0%)	2	NA	NA
AXX02627.1|2417627_2418779_-	serine-type D-Ala-D-Ala carboxypeptidase DacD	NA	B6DZZ7	Stx2-converting_phage	79.3	1.6e-169
AXX02628.1|2419037_2420189_+	acyltransferase	NA	Q6QI96	Burkholderia_phage	32.2	1.1e-37
>prophage 183
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2423428	2427854	4496886		Klosneuvirus(50.0%)	5	NA	NA
AXX02631.1|2423428_2424724_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	31.7	6.1e-32
AXX02632.1|2424990_2425770_+	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA	NA
AXX02633.1|2425753_2426578_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXX04600.1|2426758_2426809_+	his operon leader peptide	NA	NA	NA	NA	NA
AXX02634.1|2426954_2427854_+	ATP phosphoribosyltransferase	NA	A0A0F7Q4B0	Cellulophaga_phage	94.7	3.1e-11
>prophage 184
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2433386	2451283	4496886		Bodo_saltans_virus(10.0%)	17	NA	NA
AXX02641.1|2433386_2433998_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	A0A2H4UVM0	Bodo_saltans_virus	28.8	6.0e-14
AXX02642.1|2434051_2435041_-	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA	NA
AXX02643.1|2435277_2436684_-	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.7	7.3e-39
AXX02644.1|2436826_2437849_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	49.6	2.1e-88
AXX02645.1|2437900_2439022_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AXX02646.1|2439025_2440123_-	glycosyl transferase family 1	NA	K9ME50	Sulfolobus_virus	24.8	5.4e-05
AXX02647.1|2440119_2441274_-	EpsG family protein	NA	NA	NA	NA	NA
AXX02648.1|2441275_2442166_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	35.7	1.6e-12
AXX02649.1|2442162_2443155_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AXX02650.1|2443138_2444425_-	O-antigen translocase	NA	NA	NA	NA	NA
AXX02651.1|2444412_2445519_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	31.6	7.7e-44
AXX02652.1|2445523_2446057_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXX02653.1|2446049_2446451_-	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
AXX02654.1|2446452_2447316_-	glucose-1-phosphate thymidylyltransferase	NA	A0A291LA53	Escherichia_phage	69.4	1.6e-113
AXX02655.1|2447317_2448391_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.9	6.9e-98
AXX02656.1|2448804_2449695_-	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	41.7	1.4e-43
AXX02657.1|2449867_2451283_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	33.2	1.7e-19
>prophage 185
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2456809	2463532	4496886		Bacillus_phage(25.0%)	6	NA	NA
AXX02662.1|2456809_2458180_-	phosphomannomutase CpsG	NA	A0A127AWJ1	Bacillus_phage	28.0	2.1e-35
AXX02663.1|2458294_2459737_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.4	1.7e-46
AXX02664.1|2459740_2460964_-	colanic acid biosynthesis glycosyltransferase WcaI	NA	NA	NA	NA	NA
AXX02665.1|2460960_2461440_-	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA	NA
AXX02666.1|2461442_2462408_-	GDP-L-fucose synthase	NA	D1LW79	Prochlorococcus_phage	51.8	2.2e-87
AXX02667.1|2462410_2463532_-	GDP-mannose 4,6-dehydratase	NA	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	65.3	1.2e-132
>prophage 186
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2467905	2478255	4496886		uncultured_marine_virus(20.0%)	8	NA	NA
AXX02672.1|2467905_2468751_-	colanic acid biosynthesis glycosyltransferase WcaA	NA	A0A0F7L2F7	uncultured_marine_virus	27.6	7.5e-07
AXX02673.1|2468940_2471103_-	tyrosine-protein kinase Wzc	NA	A0A1X9I5D6	Streptococcus_phage	30.8	2.2e-18
AXX04602.1|2471105_2471549_-	low molecular weight protein-tyrosine-phosphatase Wzb	NA	NA	NA	NA	NA
AXX02674.1|2471554_2472694_-	polysaccharide export protein Wza	NA	NA	NA	NA	NA
AXX02675.1|2473426_2475016_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	45.8	9.7e-40
AXX02676.1|2475076_2476918_-	outer membrane assembly protein AsmA	NA	NA	NA	NA	NA
AXX02677.1|2476948_2477530_-	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	42.6	2.1e-32
AXX02678.1|2477613_2478255_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	37.4	2.2e-35
>prophage 187
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2494030	2497762	4496886		Bacillus_phage(66.67%)	3	NA	NA
AXX02688.1|2494030_2495455_+	two-component system sensor histidine kinase BaeA	NA	W8CYF6	Bacillus_phage	30.4	2.6e-28
AXX02689.1|2495451_2496174_+	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	31.7	9.2e-30
AXX02690.1|2496400_2497762_+	U32 family peptidase	NA	Q6DW11	Phage_TP	91.8	8.5e-202
>prophage 188
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2503552	2506512	4496886		Erwinia_phage(50.0%)	3	NA	NA
AXX02696.1|2503552_2503870_-	DUF1493 domain-containing protein	NA	A0A218M4K1	Erwinia_phage	65.7	9.6e-32
AXX02697.1|2504029_2504428_+	nickel/cobalt efflux protein RcnB	NA	NA	NA	NA	NA
AXX02698.1|2504787_2506512_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	25.7	1.6e-35
>prophage 189
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2510772	2512458	4496886		Enterobacteria_phage(100.0%)	1	NA	NA
AXX02703.1|2510772_2512458_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	80.9	2.4e-246
>prophage 190
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2516322	2519147	4496886	transposase	Planktothrix_phage(50.0%)	2	NA	NA
AXX02708.1|2516322_2517033_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.0	8.5e-36
AXX02709.1|2518166_2519147_-|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	2.8e-186
>prophage 191
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2522364	2527135	4496886	tRNA	Indivirus(33.33%)	5	NA	NA
AXX02712.1|2522364_2524398_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	28.6	8.0e-55
AXX02713.1|2524578_2525322_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	68.8	4.6e-77
AXX02714.1|2525381_2525492_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02715.1|2525469_2526201_-	ABC transporter permease	NA	NA	NA	NA	NA
AXX02716.1|2526193_2527135_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	25.3	1.4e-06
>prophage 192
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2533714	2534269	4496886		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXX04603.1|2533714_2534269_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	40.9	1.1e-22
>prophage 193
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2546316	2547837	4496886		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
AXX02736.1|2546316_2547837_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	32.0	6.3e-12
>prophage 194
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2551547	2552219	4496886		Cellulophaga_phage(100.0%)	1	NA	NA
AXX02741.1|2551547_2552219_-	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	55.8	1.2e-55
>prophage 195
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2558398	2559256	4496886		Hokovirus(100.0%)	1	NA	NA
AXX02747.1|2558398_2559256_+	endonuclease	NA	A0A1V0SFR4	Hokovirus	33.8	8.1e-25
>prophage 196
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2568340	2572658	4496886		Ostreococcus_tauri_virus(50.0%)	4	NA	NA
AXX02757.1|2568340_2569807_+	fructuronate reductase	NA	H8ZJP8	Ostreococcus_tauri_virus	32.5	6.0e-44
AXX02758.1|2569937_2570924_+	GTP-binding protein	NA	NA	NA	NA	NA
AXX02759.1|2570954_2571662_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AXX02760.1|2572088_2572658_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA	A0A1V0DZX6	Clostridioides_phage	39.8	2.1e-13
>prophage 197
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2578420	2586059	4496886		Vibrio_phage(50.0%)	7	NA	NA
AXX02765.1|2578420_2580010_+	microcin C ABC transporter ATP-binding protein YejF	NA	G9BWD6	Planktothrix_phage	32.8	3.2e-19
AXX02766.1|2580013_2580358_-	hypothetical protein	NA	NA	NA	NA	NA
AXX02767.1|2580692_2581889_-	Bcr/CflA family drug resistance efflux transporter	NA	S4TR35	Salmonella_phage	24.7	1.9e-24
AXX02768.1|2581904_2582612_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA	NA
AXX04604.1|2582782_2584543_+	ATP-dependent helicase	NA	M4Q3N1	Vibrio_phage	42.4	1.4e-100
AXX02769.1|2584669_2584954_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
AXX02770.1|2585054_2586059_-	nucleoid-associated protein	NA	A0A1V0E8C0	Vibrio_phage	48.0	4.8e-85
>prophage 198
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2602017	2609360	4496886		uncultured_Caudovirales_phage(20.0%)	6	NA	NA
AXX02780.1|2602017_2603511_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	46.5	1.6e-97
AXX02781.1|2603586_2605233_-	multidrug ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.0	6.1e-13
AXX02782.1|2605311_2605956_-	DNA oxidative demethylase AlkB	NA	A0A2K9L3R7	Tupanvirus	33.0	3.7e-06
AXX02783.1|2605955_2607020_-	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA	A0A0G2Y3R2	Acanthamoeba_polyphaga_mimivirus	47.2	4.2e-15
AXX02784.1|2607092_2608124_-	FAD:protein FMN transferase ApbE	NA	NA	NA	NA	NA
AXX02785.1|2608220_2609360_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	59.2	1.3e-118
>prophage 199
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2613689	2625600	4496886		Pseudomonas_phage(33.33%)	8	NA	NA
AXX02788.1|2613689_2616539_-	two-component system sensor histidine kinase RcsC	NA	A0A1V0SGX0	Hokovirus	27.6	1.2e-45
AXX02789.1|2616724_2619361_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.0	4.8e-100
AXX02790.1|2619520_2620252_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
AXX04607.1|2620301_2620493_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02791.1|2620604_2622890_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2D1GNB1	Pseudoalteromonas_phage	63.8	4.6e-285
AXX02792.1|2623064_2624195_+	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	78.6	1.1e-173
AXX02793.1|2624196_2624451_+	2Fe-2S ferredoxin-like protein	NA	G9IAA2	Pseudomonas_phage	64.3	1.3e-26
AXX02794.1|2624541_2625600_-	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	44.6	1.7e-08
>prophage 200
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2631578	2631962	4496886		Klebsiella_phage(100.0%)	1	NA	NA
AXX02800.1|2631578_2631962_-	DNA polymerase V	NA	Q6UAV9	Klebsiella_phage	51.2	2.6e-31
>prophage 201
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2637425	2672634	4496886	tail,lysis,coat,protease,portal	Salmonella_phage(35.71%)	53	NA	NA
AXX02805.1|2637425_2639201_-|tail	phage tail protein	tail	G9L6E4	Escherichia_phage	37.0	5.5e-68
AXX02806.1|2639354_2641361_-	DNA transfer protein	NA	Q716G2	Shigella_phage	73.4	1.3e-267
AXX02807.1|2641360_2642785_-	DNA transfer protein	NA	C6ZR17	Salmonella_phage	54.0	4.4e-124
AXX02808.1|2642794_2643487_-	DNA transfer protein	NA	G5DA80	Enterobacteria_phage	100.0	9.2e-112
AXX02809.1|2643489_2643945_-	hypothetical protein	NA	Q9AYZ2	Salmonella_phage	95.4	1.2e-83
AXX02810.1|2643944_2644616_-|tail	phage tail protein	tail	C6ZR14	Salmonella_phage	73.7	3.6e-44
AXX02811.1|2644615_2646037_-	hypothetical protein	NA	A0A088CQ70	Enterobacteria_phage	67.4	1.1e-191
AXX02812.1|2645996_2646512_-	recombinase RmuC	NA	E7C9U0	Salmonella_phage	64.9	8.0e-52
AXX04608.1|2646495_2646684_-	hypothetical protein	NA	I6S1J7	Salmonella_phage	56.1	3.3e-08
AXX02813.1|2646733_2648038_-|coat	coat protein	coat	A0A2D1GLV2	Escherichia_phage	71.8	2.9e-175
AXX02814.1|2648037_2648952_-	scaffolding protein	NA	A0A0M3ULI9	Salmonella_phage	84.9	2.4e-136
AXX02815.1|2648963_2651138_-|portal	portal protein	portal	A0A2D1GLJ6	Escherichia_phage	79.4	0.0e+00
AXX02816.1|2651137_2652586_-	DNA packaging protein	NA	Q2A0C1	Sodalis_phage	74.7	2.2e-224
AXX02817.1|2652554_2653058_-	DNA packaging protein	NA	A0A2K8HN72	Pseudomonas_phage	48.5	9.6e-26
AXX02818.1|2653120_2653441_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04609.1|2653513_2653882_-	hypothetical protein	NA	C6ZR73	Salmonella_phage	65.0	9.5e-07
AXX02819.1|2654036_2654276_-	DUF2560 domain-containing protein	NA	A0A192Y6S9	Salmonella_phage	57.9	4.0e-14
AXX02820.1|2654342_2654627_-	DUF2829 domain-containing protein	NA	A0A0A0P251	Enterobacteria_phage	74.7	2.8e-30
AXX02821.1|2654641_2655106_-|lysis	lysis protein	lysis	G0ZNC9	Cronobacter_phage	75.2	3.7e-48
AXX02822.1|2655095_2655590_-	lysozyme	NA	G0ZNC8	Cronobacter_phage	93.9	1.2e-84
AXX04610.1|2655598_2655820_-	hypothetical protein	NA	G0ZNC7	Cronobacter_phage	98.6	2.3e-32
AXX02823.1|2656530_2657049_-	DUF1133 domain-containing protein	NA	A0A192Y911	Salmonella_phage	91.3	1.4e-88
AXX02824.1|2657045_2657387_-	hypothetical protein	NA	A0A1P8DTU9	Salmonella_phage	76.4	4.2e-49
AXX02825.1|2657383_2657563_-	hypothetical protein	NA	NA	NA	NA	NA
AXX02826.1|2657559_2657751_-	protein ninH	NA	Q777W6	Enterobacteria_phage	63.3	2.4e-09
AXX02827.1|2657747_2658143_-	hypothetical protein	NA	F1C5C9	Cronobacter_phage	96.9	1.4e-69
AXX02828.1|2658200_2658446_-	hypothetical protein	NA	G0ZNC3	Cronobacter_phage	95.1	1.0e-36
AXX02829.1|2658429_2658615_-	NinF family protein	NA	I6R994	Salmonella_phage	60.7	4.0e-14
AXX02830.1|2658607_2658787_-	NinE family protein	NA	A0A220NRK6	Escherichia_phage	60.3	1.1e-11
AXX02831.1|2658783_2659224_-	recombination protein NinB	NA	F1C5C7	Cronobacter_phage	93.8	9.1e-73
AXX02832.1|2659204_2659417_-	hypothetical protein	NA	A0A140G668	Enterobacteria_phage	39.3	4.2e-07
AXX02833.1|2659526_2661407_-	bifunctional DNA primase/helicase	NA	B9UDH8	Salmonella_phage	90.6	0.0e+00
AXX02834.1|2661517_2662366_-	replication protein	NA	I6S659	Salmonella_phage	75.9	2.3e-117
AXX02835.1|2662547_2662826_-	hypothetical protein	NA	A5VW96	Enterobacteria_phage	87.8	9.9e-33
AXX02836.1|2662938_2663157_-	helix-turn-helix domain-containing protein	NA	Q716D6	Shigella_phage	67.6	4.9e-19
AXX02837.1|2663255_2663888_+	helix-turn-helix domain-containing protein	NA	A0A1I9KG86	Aeromonas_phage	37.4	1.3e-32
AXX02838.1|2664259_2664811_+	DUF2335 domain-containing protein	NA	NA	NA	NA	NA
AXX02839.1|2664894_2665239_-	hypothetical protein	NA	NA	NA	NA	NA
AXX02840.1|2665651_2665990_+	hypothetical protein	NA	F1C5C1	Cronobacter_phage	78.9	5.2e-36
AXX02841.1|2666582_2666714_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	NA	NA	NA	NA
AXX02842.1|2666692_2666848_+	host cell division inhibitory peptide Kil	NA	A5VWA5	Enterobacteria_phage	69.8	2.7e-11
AXX02843.1|2666939_2667248_+	hypothetical protein	NA	F1C5B9	Cronobacter_phage	94.1	3.5e-47
AXX02844.1|2667247_2668177_+	recombinase RecT	NA	F1C5B8	Cronobacter_phage	99.0	1.1e-171
AXX02845.1|2668173_2668854_+	exonuclease	NA	F1C5B7	Cronobacter_phage	98.2	2.5e-130
AXX02846.1|2668855_2669053_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02847.1|2669085_2669247_+	DUF2737 domain-containing protein	NA	A0A1V0E5L8	Salmonella_phage	60.0	7.5e-09
AXX02848.1|2669243_2669636_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02849.1|2669628_2669859_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02850.1|2669926_2670160_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02851.1|2670236_2670467_+	lF-82	NA	A0A1V0E5L9	Salmonella_phage	46.7	1.7e-06
AXX02852.1|2670501_2671143_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04611.1|2671226_2671424_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AXX02853.1|2671392_2672634_-	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	39.7	2.8e-74
>prophage 202
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2676555	2677950	4496886		Hepacivirus(100.0%)	1	NA	NA
AXX02857.1|2676555_2677950_-	o-succinylbenzoate--CoA ligase	NA	Q75ZG1	Hepacivirus	26.7	8.6e-08
>prophage 203
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2704410	2705010	4496886		Salmonella_phage(100.0%)	1	NA	NA
AXX02880.1|2704410_2705010_+	5'-deoxynucleotidase	NA	A0A2L0V156	Salmonella_phage	37.5	2.6e-06
>prophage 204
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2719280	2720054	4496886		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
AXX02897.1|2719280_2720054_-	histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein HisP	NA	M1I0T9	Acanthocystis_turfacea_Chlorella_virus	28.6	3.6e-08
>prophage 205
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2724295	2725813	4496886		Mollivirus(100.0%)	1	NA	NA
AXX02903.1|2724295_2725813_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	44.0	5.4e-88
>prophage 206
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2732269	2737310	4496886		Brazilian_cedratvirus(50.0%)	3	NA	NA
AXX02910.1|2732269_2733406_-	erythronate-4-phosphate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	27.8	8.0e-20
AXX04615.1|2733528_2734533_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA	NA
AXX02911.1|2734586_2737310_-	autotransporter domain-containing protein	NA	A0A2L0UZX3	Agrobacterium_phage	23.9	2.1e-05
>prophage 207
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2743902	2744988	4496886		Pandoravirus(100.0%)	1	NA	NA
AXX02918.1|2743902_2744988_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.4	1.7e-88
>prophage 208
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2760249	2772368	4496886	integrase,portal	Enterobacteria_phage(18.18%)	16	2762140:2762155	2772894:2772909
AXX02934.1|2760249_2760864_-	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	A0A2H4PQG7	Staphylococcus_phage	25.0	1.3e-08
AXX02935.1|2760862_2761048_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02936.1|2761060_2762011_+	hypothetical protein	NA	E7DYY8	Enterobacteria_phage	79.8	4.3e-128
2762140:2762155	attL	TTCGATTCCTGCAGGG	NA	NA	NA	NA
AXX02937.1|2762346_2763636_+|integrase	integrase	integrase	B7SYF8	Stenotrophomonas_phage	38.4	3.9e-71
AXX02938.1|2763635_2764577_+	hypothetical protein	NA	A0A1W6JPD1	Morganella_phage	48.9	8.4e-07
AXX02939.1|2764690_2764900_+	transcriptional regulator	NA	A0A1W6JPE9	Morganella_phage	47.6	9.8e-09
AXX02940.1|2764951_2765131_-	hypothetical protein	NA	A0A2H4JB52	uncultured_Caudovirales_phage	54.2	2.2e-09
AXX04619.1|2765262_2765439_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	55.6	4.2e-05
AXX02941.1|2765431_2765791_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02942.1|2765822_2766107_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02943.1|2766103_2766487_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02944.1|2766483_2769156_+	alkaline-shock protein	NA	A0A1B0VP75	Pseudomonas_phage	34.4	2.1e-58
AXX02945.1|2769557_2770319_+	septation initiation protein	NA	NA	NA	NA	NA
AXX02946.1|2770318_2770591_+	hypothetical protein	NA	A0A2I8TV89	Erwinia_phage	44.9	1.4e-07
AXX02947.1|2770946_2771309_-	hypothetical protein	NA	B2ZY70	Ralstonia_phage	41.0	8.7e-13
AXX02948.1|2771312_2772368_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	88.4	3.9e-170
2772894:2772909	attR	TTCGATTCCTGCAGGG	NA	NA	NA	NA
>prophage 209
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2785776	2786508	4496886		Clostridioides_phage(100.0%)	1	NA	NA
AXX02959.1|2785776_2786508_+	DNA-binding response regulator	NA	A0A2R2ZGH8	Clostridioides_phage	25.9	4.6e-13
>prophage 210
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2800622	2818457	4496886		Streptococcus_phage(25.0%)	19	NA	NA
AXX02971.1|2800622_2802641_-	DNA ligase (NAD(+)) LigA	NA	A0A0K2QQN8	Ralstonia_phage	42.2	1.1e-144
AXX02972.1|2802709_2803669_-	cell division protein ZipA	NA	NA	NA	NA	NA
AXX02973.1|2803899_2804661_+	sulfate transporter CysZ	NA	NA	NA	NA	NA
AXX02974.1|2804807_2805779_+	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	50.6	4.8e-74
AXX02975.1|2806162_2806420_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
AXX02976.1|2806463_2808191_+	phosphoenolpyruvate-protein phosphotransferase PtsI	NA	A0A1V0SGR7	Hokovirus	32.0	7.4e-17
AXX02977.1|2808234_2808738_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
AXX02978.1|2808910_2809276_+	hypothetical protein	NA	NA	NA	NA	NA
AXX02979.1|2809338_2810253_-	cysteine synthase CysM	NA	A0A1X9I5F1	Streptococcus_phage	43.1	7.0e-59
AXX02980.1|2810372_2811467_-	sulfate/thiosulfate ABC transporter ATP-binding protein CysA	NA	G9BWD6	Planktothrix_phage	39.8	3.3e-31
AXX02981.1|2811456_2812326_-	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
AXX02982.1|2812325_2813156_-	sulfate/thiosulfate ABC transporter permease CysT	NA	NA	NA	NA	NA
AXX02983.1|2813155_2814172_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXX02984.1|2814331_2815234_-	peroxidase	NA	S4VVJ7	Pandoravirus	31.9	3.6e-23
AXX02985.1|2815324_2815909_-	RpoE-regulated lipoprotein	NA	NA	NA	NA	NA
AXX02986.1|2815971_2816406_-	DUF2919 domain-containing protein	NA	NA	NA	NA	NA
AXX02987.1|2816504_2816903_+	TIGR00156 family protein	NA	A0A1I9LJU6	Stx_converting_phage	51.2	1.2e-26
AXX02988.1|2816941_2817367_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
AXX02989.1|2817581_2818457_+	N-acetylmuramoyl-L-alanine amidase AmiA	NA	A0A0N9SGH1	Paenibacillus_phage	32.4	5.7e-18
>prophage 211
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2825161	2826667	4496886		Cedratvirus(100.0%)	1	NA	NA
AXX02996.1|2825161_2826667_-	sugar ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	26.6	7.1e-08
>prophage 212
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2829825	2830206	4496886		Burkholderia_phage(100.0%)	1	NA	NA
AXX03000.1|2829825_2830206_+	XRE family transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	39.2	1.1e-10
>prophage 213
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2835329	2836934	4496886		Staphylococcus_phage(100.0%)	1	NA	NA
AXX03006.1|2835329_2836934_-	2,3-dihydroxybenzoate-AMP ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.8	1.7e-23
>prophage 214
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2840634	2843419	4496886		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
AXX03010.1|2840634_2841642_+	Fe(3+)-siderophore ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	23.7	4.4e-06
AXX03011.1|2841638_2842631_+	iron-enterobactin ABC transporter permease	NA	NA	NA	NA	NA
AXX03012.1|2842633_2843419_+	iron-enterobactin transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	9.1e-07
>prophage 215
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2863681	2864395	4496886		Synechococcus_phage(100.0%)	1	NA	NA
AXX03029.1|2863681_2864395_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3FGF0	Synechococcus_phage	36.1	4.1e-38
>prophage 216
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2870454	2875567	4496886		Prochlorococcus_phage(50.0%)	6	NA	NA
AXX03037.1|2870454_2870811_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	47.4	5.0e-21
AXX03038.1|2870861_2871563_-	DnaA inactivator Hda	NA	NA	NA	NA	NA
AXX03039.1|2871658_2872948_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	37.4	3.2e-65
AXX03040.1|2873029_2873656_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AXX03041.1|2873888_2874926_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.8	1.2e-70
AXX03042.1|2874925_2875567_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	40.9	6.3e-30
>prophage 217
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2882037	2882241	4496886		Escherichia_phage(100.0%)	1	NA	NA
AXX03046.1|2882037_2882241_+	DUF2633 domain-containing protein	NA	G9L6F2	Escherichia_phage	66.7	2.1e-16
>prophage 218
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2888257	2888692	4496886		Escherichia_phage(100.0%)	1	NA	NA
AXX03049.1|2888257_2888692_-	addiction module antidote protein, HigA family	NA	A0A222YWD7	Escherichia_phage	41.9	3.5e-08
>prophage 219
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2897055	2903204	4496886	integrase	Salmonella_phage(33.33%)	4	2895277:2895289	2898291:2898303
2895277:2895289	attL	AGAAAATTTATTT	NA	NA	NA	NA
AXX03057.1|2897055_2898243_-|integrase	site-specific integrase	integrase	T1S9J3	Salmonella_phage	54.1	1.3e-118
AXX03058.1|2898549_2900127_-	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA	NA
2898291:2898303	attR	AGAAAATTTATTT	NA	NA	NA	NA
AXX03059.1|2900193_2901660_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	39.6	1.6e-89
AXX03060.1|2901830_2903204_+	exodeoxyribonuclease 7 large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	34.1	3.8e-40
>prophage 220
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2913693	2914125	4496886		Powai_lake_megavirus(100.0%)	1	NA	NA
AXX03072.1|2913693_2914125_-	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	39.4	9.7e-19
>prophage 221
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2932246	2938577	4496886		Mycoplasma_phage(20.0%)	8	NA	NA
AXX03082.1|2932246_2933533_-	peptidase B	NA	Q6GYZ8	Mycoplasma_phage	32.7	4.0e-36
AXX03083.1|2933596_2933797_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AXX03084.1|2933798_2934134_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AXX03085.1|2934136_2935987_-	molecular chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.4	4.1e-106
AXX03086.1|2936002_2936518_-	co-chaperone HscB	NA	NA	NA	NA	NA
AXX03087.1|2936599_2936923_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	3.5e-21
AXX03088.1|2936947_2937334_-	iron-sulfur cluster scaffold-like protein	NA	A0A218MKD1	uncultured_virus	78.1	9.2e-53
AXX03089.1|2937362_2938577_-	IscS subfamily cysteine desulfurase	NA	A0A1X7C038	Faustovirus	32.1	7.9e-34
>prophage 222
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2946340	2957831	4496886		Bacillus_phage(50.0%)	7	NA	NA
AXX03099.1|2946340_2947594_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.4	6.6e-100
AXX03100.1|2947916_2949107_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
AXX03101.1|2949387_2949726_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
AXX03102.1|2949824_2951162_-	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	36.9	8.8e-10
AXX03103.1|2951158_2951932_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
AXX03104.1|2951928_2953365_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.7	2.8e-14
AXX03105.1|2953940_2957831_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	58.4	1.0e-130
>prophage 223
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2964057	2981111	4496886	tRNA	uncultured_Mediterranean_phage(12.5%)	20	NA	NA
AXX03110.1|2964057_2964318_+	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	50.0	9.3e-17
AXX03111.1|2964314_2964695_-	holo-ACP synthase	NA	NA	NA	NA	NA
AXX03112.1|2964694_2965426_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AXX03113.1|2965500_2966238_-	DNA repair protein RecO	NA	NA	NA	NA	NA
AXX03114.1|2966247_2967153_-	GTPase Era	NA	NA	NA	NA	NA
AXX03115.1|2967149_2967830_-	ribonuclease III	NA	A0A0P0YM82	Yellowstone_lake_phycodnavirus	30.2	1.6e-20
AXX03116.1|2968001_2968967_-	signal peptidase I	NA	NA	NA	NA	NA
AXX03117.1|2968981_2970781_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	26.1	5.0e-24
AXX03118.1|2970736_2970940_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03119.1|2970980_2971460_-	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
AXX03120.1|2971456_2972410_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
AXX03121.1|2972409_2973060_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
AXX03122.1|2973091_2973667_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	28.6	3.7e-05
AXX03123.1|2974091_2975711_+	L-aspartate oxidase	NA	NA	NA	NA	NA
AXX03124.1|2975695_2976433_-|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	tRNA	NA	NA	NA	NA
AXX03125.1|2976561_2977896_+	ATP-dependent RNA helicase SrmB	NA	E3T5E1	Cafeteria_roenbergensis_virus	29.6	2.5e-41
AXX03126.1|2977971_2978355_-	autonomous glycyl radical cofactor GrcA	NA	A0A1W5N098	Cronobacter_phage	69.9	6.1e-33
AXX03127.1|2978661_2979351_+	uracil-DNA glycosylase	NA	A0A1R3T3N6	Sphenicid_alphaherpesvirus	49.5	2.1e-55
AXX03128.1|2979408_2980470_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
AXX03129.1|2980679_2981111_+	thioredoxin TrxC	NA	V9SJ74	Achromobacter_phage	36.7	7.2e-14
>prophage 224
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2986097	2988292	4496886		Iodobacteriophage(33.33%)	3	NA	NA
AXX04627.1|2986097_2986421_+	hypothetical protein	NA	B5AX59	Iodobacteriophage	37.8	1.6e-05
AXX03133.1|2986417_2987719_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.6	1.2e-43
AXX03134.1|2987836_2988292_-	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	48.6	1.4e-31
>prophage 225
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	2996862	2999436	4496886		Enterobacteria_phage(100.0%)	1	NA	NA
AXX03138.1|2996862_2999436_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.1	9.9e-127
>prophage 226
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3007603	3096815	4496886	terminase,tail,holin,integrase,tRNA,head,transposase,capsid,portal	Cronobacter_phage(58.33%)	95	3024147:3024193	3055039:3055085
AXX03145.1|3007603_3008674_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B6VT43	Edwardsiella_phage	51.5	2.4e-90
AXX03146.1|3008872_3010240_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AXX03147.1|3010293_3010734_-	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AXX03148.1|3010900_3011248_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AXX03149.1|3011293_3012067_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AXX03150.1|3012097_3012646_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AXX03151.1|3012664_3012913_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AXX03152.1|3013171_3014533_-	signal recognition particle protein	NA	NA	NA	NA	NA
AXX03153.1|3014695_3015490_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
AXX03154.1|3015508_3016798_+	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AXX03155.1|3016867_3017461_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AXX04630.1|3017425_3017569_+	inorganic polyphosphate kinase	NA	NA	NA	NA	NA
AXX03156.1|3017583_3018462_+	NAD(+) kinase	NA	NA	NA	NA	NA
AXX03157.1|3018548_3020210_+	DNA repair protein RecN	NA	NA	NA	NA	NA
AXX03158.1|3020427_3020772_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AXX03159.1|3020881_3021172_-	RnfH family protein	NA	NA	NA	NA	NA
AXX03160.1|3021161_3021599_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AXX03161.1|3021747_3022230_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	48.1	1.0e-29
AXX03162.1|3022320_3022503_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03163.1|3023282_3023516_+	hypothetical protein	NA	NA	NA	NA	NA
3024147:3024193	attL	ATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAA	NA	NA	NA	NA
AXX03164.1|3024348_3025185_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04631.1|3025223_3026612_-	modification methylase SinI	NA	F2Y148	Organic_Lake_phycodnavirus	34.7	5.9e-49
AXX03165.1|3026999_3027266_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03166.1|3027272_3028973_-	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	83.2	2.3e-244
AXX03167.1|3028975_3029524_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	83.5	3.3e-72
AXX03168.1|3029495_3030221_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	79.7	3.0e-89
AXX03169.1|3030210_3030771_-|tail	tail fiber assembly protein	tail	Q6K1H1	Salmonella_virus	38.6	2.8e-26
AXX03170.1|3030743_3032738_-	hypothetical protein	NA	F1BUK3	Cronobacter_phage	42.7	1.6e-116
AXX03171.1|3032747_3033332_-	hypothetical protein	NA	F1BUK5	Cronobacter_phage	81.0	1.9e-89
AXX03172.1|3033324_3034509_-	hypothetical protein	NA	F1BUK6	Cronobacter_phage	90.4	1.6e-201
AXX03173.1|3034505_3034835_-	DUF2590 domain-containing protein	NA	F1BUK8	Cronobacter_phage	89.5	4.4e-48
AXX03174.1|3034831_3036802_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	77.2	3.7e-283
AXX03175.1|3036989_3037247_-	hypothetical protein	NA	A5X9I7	Aeromonas_virus	62.2	5.2e-20
AXX03176.1|3037233_3037422_-	hypothetical protein	NA	F1BUL1	Cronobacter_phage	90.3	1.8e-25
AXX03177.1|3037393_3037726_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	90.0	7.7e-48
AXX03178.1|3037725_3038067_-	hypothetical protein	NA	F1BUL3	Cronobacter_phage	94.1	1.2e-51
AXX03179.1|3038067_3038361_-|holin	holin	holin	C7BGD7	Burkholderia_phage	49.4	5.2e-16
AXX03180.1|3038370_3038826_-	DUF2597 domain-containing protein	NA	F1BUL4	Cronobacter_phage	82.1	1.7e-69
AXX03181.1|3038822_3039950_-	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	91.7	5.4e-194
AXX03182.1|3039946_3040654_-	hypothetical protein	NA	F1BUL6	Cronobacter_phage	87.6	1.6e-114
AXX03183.1|3040653_3041157_-|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	77.6	1.5e-71
AXX03184.1|3041153_3041606_-|head	head completion protein	head	F1BUL8	Cronobacter_phage	90.0	4.4e-70
AXX03185.1|3041700_3042399_-|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	93.5	2.2e-121
AXX03186.1|3042402_3043425_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	88.5	8.4e-170
AXX03187.1|3043495_3044314_-|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	57.7	5.3e-90
AXX03188.1|3044477_3046253_+|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	88.2	3.9e-308
AXX03189.1|3046249_3047290_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	91.0	1.8e-183
AXX03190.1|3047286_3047610_+	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	94.3	2.7e-50
AXX04632.1|3047583_3047805_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	51.9	1.7e-06
AXX03191.1|3047924_3049943_-	replication endonuclease	NA	F1BUM9	Cronobacter_phage	89.6	0.0e+00
AXX03192.1|3049939_3050797_-	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	76.3	1.6e-121
AXX03193.1|3050793_3051090_-	DUF3850 domain-containing protein	NA	Q7Y4B7	Escherichia_virus	43.4	8.7e-11
AXX03194.1|3051080_3051314_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03195.1|3051380_3051782_-	hypothetical protein	NA	F1BUN2	Cronobacter_phage	75.2	2.1e-52
AXX04633.1|3051785_3052097_-	hypothetical protein	NA	F1BUN5	Cronobacter_phage	72.8	2.0e-37
AXX03196.1|3052194_3052386_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04634.1|3052396_3052900_-	hypothetical protein	NA	F1BUN6	Cronobacter_phage	94.0	1.5e-79
AXX03197.1|3053910_3054927_+|integrase	integrase	integrase	F1BUN9	Cronobacter_phage	91.7	1.2e-184
AXX03198.1|3055265_3058397_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	27.4	1.8e-74
3055039:3055085	attR	ATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAA	NA	NA	NA	NA
AXX03199.1|3060784_3061132_-	DUF1493 domain-containing protein	NA	NA	NA	NA	NA
AXX03200.1|3061122_3061578_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03201.1|3061916_3062285_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03202.1|3062393_3063374_-|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	2.8e-186
AXX03203.1|3063608_3065486_-	chemoreceptor	NA	A0A2H4J162	uncultured_Caudovirales_phage	55.7	1.1e-10
AXX03204.1|3065819_3065978_-	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA	NA
AXX03205.1|3066203_3066383_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03206.1|3066480_3066789_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03207.1|3067303_3067759_+	L-alanine exporter AlaE	NA	NA	NA	NA	NA
AXX03208.1|3067770_3068115_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03209.1|3068275_3068602_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AXX03210.1|3068877_3069123_+	NrdH-redoxin	NA	A0A1J0MDS4	Mycobacterium_phage	39.8	1.4e-06
AXX03211.1|3069119_3069521_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
AXX03212.1|3069502_3071653_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	49.6	7.6e-197
AXX04635.1|3071665_3072625_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	71.5	3.5e-133
AXX03213.1|3072979_3074182_+	proline/glycine betaine ABC transporter ATP-binding protein ProV	NA	G3M9Y6	Bacillus_virus	38.3	3.2e-27
AXX03214.1|3074174_3075245_+	proline/glycine betaine ABC transporter permease ProW	NA	NA	NA	NA	NA
AXX03215.1|3075299_3076295_+	proline/glycine betaine ABC transporter substrate-binding protein ProX	NA	NA	NA	NA	NA
AXX03216.1|3076551_3077736_+	MFS transporter	NA	NA	NA	NA	NA
AXX03217.1|3077820_3078024_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03218.1|3078273_3078804_+	transcriptional repressor MprA	NA	NA	NA	NA	NA
AXX03219.1|3078943_3080119_+	multidrug export protein EmrA	NA	NA	NA	NA	NA
AXX03220.1|3080133_3081666_+	multidrug efflux MFS transporter subunit EmrB	NA	NA	NA	NA	NA
AXX03221.1|3081715_3084235_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
AXX03222.1|3084674_3085190_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
AXX03223.1|3085342_3086899_-	glutamate--cysteine ligase	NA	NA	NA	NA	NA
AXX03224.1|3086991_3087420_-	DedA family protein	NA	NA	NA	NA	NA
AXX04636.1|3087416_3087983_-	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA	NA
AXX03225.1|3089086_3089329_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03226.1|3089344_3089530_-	carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
AXX03227.1|3089773_3092401_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.0	8.4e-81
AXX04637.1|3092536_3093034_-	regulatory protein RecX	NA	NA	NA	NA	NA
AXX03228.1|3093103_3094168_-	DNA recombination/repair protein RecA	NA	A0A2D1GPX2	Mycobacterium_phage	63.4	6.8e-114
AXX03229.1|3094256_3094754_-	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	51.0	1.8e-32
AXX03230.1|3094894_3095977_-	murein transglycosylase B	NA	NA	NA	NA	NA
AXX04638.1|3096092_3096815_-	amino acid ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.5	3.8e-15
>prophage 227
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3101688	3104250	4496886		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
AXX03236.1|3101688_3104250_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.7	3.9e-30
>prophage 228
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3110183	3113884	4496886		uncultured_Mediterranean_phage(50.0%)	4	NA	NA
AXX03244.1|3110183_3111176_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
AXX03245.1|3111235_3112375_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.2	2.5e-05
AXX03246.1|3112502_3113129_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.0	8.2e-35
AXX03247.1|3113122_3113884_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.8	5.5e-57
>prophage 229
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3117366	3119399	4496886		Tupanvirus(50.0%)	2	NA	NA
AXX03253.1|3117366_3117972_-	adenylyl-sulfate kinase	NA	A0A2K9L4R9	Tupanvirus	37.1	7.2e-28
AXX03254.1|3117971_3119399_-	sulfate adenylyltransferase	NA	A0A1V0SGC3	Hokovirus	28.4	8.4e-35
>prophage 230
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3128394	3129066	4496886		Vibrio_phage(100.0%)	1	NA	NA
AXX03262.1|3128394_3129066_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A2I7S8X1	Vibrio_phage	25.5	1.6e-12
>prophage 231
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3134950	3137969	4496886		Streptococcus_phage(50.0%)	2	NA	NA
AXX03268.1|3134950_3136249_-	enolase	NA	A0A1X9I5Z8	Streptococcus_phage	58.6	1.3e-130
AXX03269.1|3136331_3137969_-	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.9	5.5e-155
>prophage 232
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3141372	3149201	4496886	tRNA	Erysipelothrix_phage(33.33%)	7	NA	NA
AXX03272.1|3141372_3142671_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	25.9	6.1e-32
AXX03273.1|3142728_3145488_+	two-component sensor histidine kinase BarA	NA	A0A1V0SGX0	Hokovirus	28.2	1.2e-48
AXX03274.1|3145522_3145972_-	flavodoxin	NA	NA	NA	NA	NA
AXX03275.1|3145975_3146773_-|tRNA	tRNA pseudouridine(65) synthase TruC	tRNA	NA	NA	NA	NA
AXX03276.1|3146769_3147099_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03277.1|3147740_3148286_-	protein Syd	NA	NA	NA	NA	NA
AXX03278.1|3148355_3149201_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	38.1	7.2e-42
>prophage 233
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3153984	3154740	4496886		Bacillus_phage(100.0%)	1	NA	NA
AXX03282.1|3153984_3154740_+	flap endonuclease Xni	NA	B6V2K6	Bacillus_phage	26.4	4.8e-13
>prophage 234
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3158201	3173345	4496886	tRNA	environmental_halophage(16.67%)	9	NA	NA
AXX03287.1|3158201_3159407_+	cysteine desulfurase CsdA	NA	Q2XUY6	environmental_halophage	37.5	3.9e-73
AXX03288.1|3159407_3159851_+	cysteine desulfurase sulfur acceptor subunit CsdE	NA	NA	NA	NA	NA
AXX03289.1|3159851_3160661_-|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	33.9	2.2e-16
AXX03290.1|3160770_3161868_-	murein transglycosylase A	NA	NA	NA	NA	NA
AXX03291.1|3162236_3163490_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	27.5	1.0e-12
AXX03292.1|3163717_3165049_+	amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AXX03293.1|3165085_3166921_-	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	26.9	1.4e-26
AXX03294.1|3166917_3170460_-	exodeoxyribonuclease V subunit beta	NA	A7KV33	Bacillus_phage	21.4	2.0e-08
AXX03295.1|3170456_3173345_-	pitrilysin	NA	A0A1V0SJA4	Klosneuvirus	23.8	5.3e-60
>prophage 235
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3178778	3190494	4496886		Geobacillus_virus(25.0%)	10	NA	NA
AXX03301.1|3178778_3179573_-	thymidylate synthase	NA	A6M9A2	Geobacillus_virus	72.7	8.1e-120
AXX03302.1|3179579_3180455_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AXX03303.1|3180619_3182866_-	phosphoenolpyruvate-protein phosphotransferase PtsP	NA	A0A1V0SGR7	Hokovirus	25.7	8.7e-10
AXX03304.1|3182878_3183412_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AXX03305.1|3184095_3184782_+	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA	NA
AXX03306.1|3184860_3185574_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	48.6	3.1e-46
AXX03307.1|3185702_3185921_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
AXX03308.1|3186057_3187098_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AXX03309.1|3187148_3188342_-	MFS transporter	NA	NA	NA	NA	NA
AXX03310.1|3188334_3190494_-	bifunctional 2-acylglycerophosphoethanolamine acyltransferase/acyl-ACP synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	25.8	2.9e-18
>prophage 236
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3196648	3197686	4496886		Enterobacteria_phage(100.0%)	1	NA	NA
AXX03316.1|3196648_3197686_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.0	2.5e-28
>prophage 237
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3204939	3208353	4496886		Bacillus_phage(50.0%)	3	NA	NA
AXX03324.1|3204939_3206067_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.5	1.8e-11
AXX03325.1|3206080_3207370_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXX03326.1|3207591_3208353_-	2-deoxy-D-gluconate 3-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.9	1.9e-17
>prophage 238
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3217165	3218705	4496886	capsid	Dickeya_phage(50.0%)	2	NA	NA
AXX03336.1|3217165_3217693_-	HNH endonuclease	NA	A0A219MH34	Dickeya_phage	43.3	3.6e-15
AXX03337.1|3217709_3218705_-|capsid	capsid protein	capsid	A0A088FAD6	Enterobacteria_phage	54.6	2.5e-94
>prophage 239
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3222500	3224345	4496886		Acanthamoeba_polyphaga_lentillevirus(100.0%)	1	NA	NA
AXX03346.1|3222500_3224345_-	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	23.5	3.8e-11
>prophage 240
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3229016	3236015	4496886	tRNA	Microcystis_virus(20.0%)	6	NA	NA
AXX03349.1|3229016_3229775_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A7K9	Microcystis_virus	35.7	6.5e-10
AXX03350.1|3229917_3231435_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	39.3	7.7e-87
AXX03351.1|3231444_3232543_-	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.0	7.0e-05
AXX03352.1|3232639_3234373_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	6.8e-63
AXX03353.1|3234376_3235096_-	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
AXX03354.1|3235118_3236015_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.3	5.1e-30
>prophage 241
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3240853	3246359	4496886		Pandoravirus(50.0%)	3	NA	NA
AXX03362.1|3240853_3242287_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	26.5	4.4e-31
AXX03363.1|3242574_3243318_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXX03364.1|3243485_3246359_-	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	2.2e-260
>prophage 242
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3254144	3255383	4496886		Catovirus(100.0%)	1	NA	NA
AXX03373.1|3254144_3255383_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	49.1	2.8e-103
>prophage 243
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3264000	3265137	4496886		Rhodococcus_phage(100.0%)	1	NA	NA
AXX03382.1|3264000_3265137_+	ADP-ribosylglycohydrolase family protein	NA	A0A2D0ZND4	Rhodococcus_phage	28.6	2.2e-17
>prophage 244
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3272250	3273405	4496886		Staphylococcus_phage(100.0%)	1	NA	NA
AXX03387.1|3272250_3273405_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	62.7	4.0e-128
>prophage 245
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3289788	3292059	4496886		Bacillus_virus(100.0%)	1	NA	NA
AXX03405.1|3289788_3292059_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	34.4	2.9e-85
>prophage 246
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3295752	3297645	4496886		Bacillus_virus(100.0%)	1	NA	NA
AXX03410.1|3295752_3297645_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	34.8	1.3e-91
>prophage 247
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3302023	3308606	4496886		Erwinia_phage(25.0%)	7	NA	NA
AXX03416.1|3302023_3302677_+	DUF1190 domain-containing protein	NA	A0A173GEW8	Erwinia_phage	48.9	3.2e-37
AXX03417.1|3302680_3303841_+	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	43.9	1.1e-88
AXX03418.1|3303868_3304660_-	4,5-DOPA dioxygenase extradiol	NA	NA	NA	NA	NA
AXX03419.1|3304851_3305628_+	zinc transporter ZupT	NA	NA	NA	NA	NA
AXX03420.1|3305694_3306348_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	43.3	7.0e-45
AXX03421.1|3306762_3307128_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03422.1|3307178_3308606_-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	29.2	3.1e-37
>prophage 248
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3313792	3334490	4496886	integrase,portal,tRNA	Moraxella_phage(20.0%)	21	3323913:3323957	3334682:3334726
AXX03426.1|3313792_3315040_+|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	52.1	3.1e-94
AXX03427.1|3315045_3315864_-	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AXX03428.1|3315991_3316354_-	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
AXX03429.1|3316458_3317076_+	acyl-phosphate--glycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA	NA
AXX03430.1|3317112_3318126_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.2	1.5e-107
AXX03431.1|3318374_3318590_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AXX03432.1|3318702_3320448_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.1	6.4e-77
AXX03433.1|3320687_3322532_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
AXX03434.1|3322774_3323197_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03435.1|3323249_3323756_-	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
3323913:3323957	attL	CTCATAATCGCTTGGTCGTTGGTTCAAACCCAACAGGGGCCACCA	NA	NA	NA	NA
AXX03436.1|3324484_3325540_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	88.1	1.1e-169
AXX03437.1|3325543_3325906_+	hypothetical protein	NA	B2ZY70	Ralstonia_phage	42.2	3.0e-13
AXX03438.1|3326261_3326534_-	hypothetical protein	NA	A0A2I8TV89	Erwinia_phage	44.9	1.4e-07
AXX03439.1|3326533_3327295_-	septation initiation protein	NA	NA	NA	NA	NA
AXX03440.1|3327696_3330369_-	alkaline-shock protein	NA	A0A1B0VP75	Pseudomonas_phage	34.4	1.6e-58
AXX03441.1|3330365_3330749_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03442.1|3330745_3331030_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03443.1|3331061_3331421_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03444.1|3331413_3331590_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	55.6	4.2e-05
AXX03445.1|3331972_3332164_-	DNA-binding protein	NA	NA	NA	NA	NA
AXX03446.1|3333089_3334490_-|integrase	integrase	integrase	A0A0R6PGY7	Moraxella_phage	31.5	4.4e-44
3334682:3334726	attR	CTCATAATCGCTTGGTCGTTGGTTCAAACCCAACAGGGGCCACCA	NA	NA	NA	NA
>prophage 249
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3338149	3339055	4496886		Indivirus(100.0%)	1	NA	NA
AXX03451.1|3338149_3339055_+	geranylgeranyl pyrophosphate synthase	NA	A0A1V0SE37	Indivirus	25.7	2.5e-08
>prophage 250
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3352146	3352789	4496886		Pseudomonas_phage(50.0%)	2	NA	NA
AXX03462.1|3352146_3352584_-	CopG family transcriptional regulator	NA	A0A0U4ISP5	Pseudomonas_phage	34.9	1.9e-09
AXX03463.1|3352600_3352789_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0D4DC32	Acinetobacter_phage	45.0	2.0e-05
>prophage 251
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3356866	3357949	4496886		Geobacillus_virus(100.0%)	1	NA	NA
AXX03470.1|3356866_3357949_+	lytic murein transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	7.6e-12
>prophage 252
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3384508	3385912	4496886		Pseudomonas_phage(100.0%)	1	NA	NA
AXX03489.1|3384508_3385912_-	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	31.5	7.5e-44
>prophage 253
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3406516	3407413	4496886		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
AXX03507.1|3406516_3407413_+	SDR family NAD(P)-dependent oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	47.8	1.5e-66
>prophage 254
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3413235	3417706	4496886		Staphylococcus_phage(50.0%)	6	NA	NA
AXX03515.1|3413235_3414063_+	2,5-didehydrogluconate reductase DkgA	NA	A0A2H4PQR8	Staphylococcus_phage	45.1	2.3e-64
AXX03516.1|3414139_3414649_+	DUF3828 domain-containing protein	NA	NA	NA	NA	NA
AXX03517.1|3414708_3415011_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AXX03518.1|3415069_3415705_-	glutaredoxin 2	NA	NA	NA	NA	NA
AXX03519.1|3415893_3416511_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AXX03520.1|3416758_3417706_+	HTH-type transcriptional regulator TreR	NA	C6ZCU4	Enterobacteria_phage	22.5	1.9e-14
>prophage 255
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3422802	3426225	4496886		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
AXX03525.1|3422802_3424938_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	65.8	3.2e-272
AXX03526.1|3425233_3425698_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	K4F9T1	Cronobacter_phage	56.7	1.6e-51
AXX03527.1|3425705_3425993_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	63.2	2.9e-27
AXX03528.1|3425982_3426225_-	type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	50.0	3.6e-15
>prophage 256
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3439630	3449973	4496886		uncultured_Caudovirales_phage(60.0%)	8	NA	NA
AXX03544.1|3439630_3440722_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	42.1	6.8e-69
AXX03545.1|3441004_3442570_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	36.4	3.5e-10
AXX03546.1|3442680_3443670_-	sugar ABC transporter permease YjfF	NA	NA	NA	NA	NA
AXX03547.1|3443656_3444682_-	ABC transporter permease	NA	NA	NA	NA	NA
AXX03548.1|3444692_3446195_-	sugar ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	23.4	3.1e-11
AXX03549.1|3446440_3447397_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AXX03550.1|3447798_3448326_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	63.3	6.4e-57
AXX03551.1|3448377_3449973_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.2	7.8e-05
>prophage 257
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3477919	3497946	4496886	tRNA,protease	uncultured_Caudovirales_phage(12.5%)	17	NA	NA
AXX03580.1|3477919_3479851_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	36.5	1.2e-12
AXX03581.1|3479851_3481486_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AXX03582.1|3481576_3482764_-	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	45.0	6.7e-86
AXX03583.1|3482764_3483421_-	DUF1190 domain-containing protein	NA	A0A1V0E6P1	Klebsiella_phage	26.8	5.5e-05
AXX03584.1|3483442_3483841_-	DUF350 domain-containing protein	NA	NA	NA	NA	NA
AXX03585.1|3483997_3484729_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
AXX03586.1|3484810_3487276_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.3	1.2e-68
AXX04644.1|3487312_3487738_-	HTH-type transcriptional repressor NsrR	NA	NA	NA	NA	NA
AXX03587.1|3487892_3489191_-	adenylosuccinate synthetase	NA	W5S5V7	Pithovirus	35.4	8.4e-66
AXX03588.1|3489293_3489491_-	DUF2065 domain-containing protein	NA	NA	NA	NA	NA
AXX03589.1|3489553_3490558_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AXX03590.1|3490560_3491805_-|protease	FtsH protease activity modulator HflK	protease	S4VT23	Pandoravirus	25.7	2.2e-07
AXX03591.1|3491976_3493257_-	GTPase HflX	NA	NA	NA	NA	NA
AXX03592.1|3493330_3493639_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AXX03593.1|3493739_3494690_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AXX03594.1|3494682_3496590_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	40.7	1.0e-59
AXX03595.1|3496599_3497946_-	N-acetylmuramoyl-L-alanine amidase AmiB	NA	A0A067ZJB6	Vibrio_phage	29.6	2.0e-17
>prophage 258
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3501811	3502357	4496886		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
AXX03599.1|3501811_3502357_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	41.0	1.7e-28
>prophage 259
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3508085	3513316	4496886		Tupanvirus(33.33%)	6	NA	NA
AXX03603.1|3508085_3509063_-	elongation factor P--(R)-beta-lysine ligase	NA	A0A2K9KZX5	Tupanvirus	28.8	4.4e-27
AXX03604.1|3509365_3511156_+	fumarate reductase (quinol) flavoprotein subunit	NA	A0A2P0ZL82	Lactobacillus_phage	26.2	1.4e-15
AXX03605.1|3511148_3511895_+	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AXX03606.1|3511894_3512290_+	fumarate reductase subunit FrdC	NA	NA	NA	NA	NA
AXX03607.1|3512300_3512660_+	fumarate reductase subunit D	NA	NA	NA	NA	NA
AXX03608.1|3512776_3513316_+	hypothetical protein	NA	A0A1W6JNX6	Morganella_phage	53.8	5.8e-45
>prophage 260
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3517601	3519588	4496886		Vibrio_phage(50.0%)	2	NA	NA
AXX03616.1|3517601_3519245_-	molecular chaperone GroEL	NA	A0A2I7SAK5	Vibrio_phage	69.0	1.3e-188
AXX03617.1|3519294_3519588_-	co-chaperone GroES	NA	K4F9I2	Cronobacter_phage	41.2	1.0e-11
>prophage 261
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3526557	3531578	4496886		Stenotrophomonas_phage(50.0%)	4	NA	NA
AXX03624.1|3526557_3527802_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	43.1	1.0e-84
AXX04646.1|3528348_3528693_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04647.1|3528766_3529897_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03625.1|3529949_3531578_-	SAM-dependent methyltransferase	NA	A0A076FHD3	Aureococcus_anophage	32.4	8.2e-10
>prophage 262
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3534653	3535754	4496886		Escherichia_phage(100.0%)	1	NA	NA
AXX03628.1|3534653_3535754_-	RNA-directed DNA polymerase	NA	A0A0F7LDS3	Escherichia_phage	24.8	3.2e-18
>prophage 263
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3543965	3544199	4496886		Vibrio_phage(100.0%)	1	NA	NA
AXX03644.1|3543965_3544199_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	50.0	8.4e-09
>prophage 264
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3566523	3568380	4496886		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AXX03660.1|3566523_3568380_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	24.1	8.5e-19
>prophage 265
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3571484	3573443	4496886		Staphylococcus_phage(100.0%)	1	NA	NA
AXX03665.1|3571484_3573443_+	acetyl-coenzyme A synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	5.9e-87
>prophage 266
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3578756	3580106	4496886		Moraxella_phage(100.0%)	1	NA	NA
AXX03669.1|3578756_3580106_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	70.9	1.1e-158
>prophage 267
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3585074	3598293	4496886		Bacillus_phage(16.67%)	11	NA	NA
AXX03675.1|3585074_3586121_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.3	4.0e-18
AXX03676.1|3586468_3587005_-	single-stranded DNA-binding protein SSB1	NA	A0A0A0P1Q9	Enterobacteria_phage	88.2	2.0e-50
AXX03677.1|3587235_3590061_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.6	6.2e-311
AXX03678.1|3590214_3590661_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03679.1|3590673_3591018_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03680.1|3591059_3591413_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03681.1|3591409_3591832_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
AXX03682.1|3591942_3593625_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	A0A0R6PI85	Moraxella_phage	21.5	2.6e-19
AXX03683.1|3594045_3595239_-	aromatic amino acid transaminase	NA	NA	NA	NA	NA
AXX03684.1|3595646_3596726_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	28.2	2.9e-27
AXX03685.1|3596886_3598293_-	replicative DNA helicase DnaB	NA	A0A1B0VG30	Salmonella_phage	78.1	5.9e-198
>prophage 268
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3605539	3606148	4496886		Lactococcus_phage(100.0%)	1	NA	NA
AXX03693.1|3605539_3606148_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	36.8	2.0e-14
>prophage 269
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3613484	3614594	4496886		Mycoplasma_phage(100.0%)	1	NA	NA
AXX03700.1|3613484_3614594_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	46.1	5.2e-16
>prophage 270
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3628356	3630385	4496886		Pseudomonas_phage(50.0%)	2	NA	NA
AXX03713.1|3628356_3629142_-	nucleotidyltransferase domain-containing protein	NA	Q8SCS5	Pseudomonas_phage	43.9	1.1e-49
AXX03714.1|3629158_3630385_-	RtcB family protein	NA	K4K356	Caulobacter_virus	63.3	4.1e-139
>prophage 271
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3637323	3641058	4496886		Dickeya_phage(100.0%)	1	NA	NA
AXX03721.1|3637323_3641058_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	92.1	2.6e-27
>prophage 272
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3655888	3660200	4496886	tRNA	Pandoravirus(33.33%)	6	NA	NA
AXX03731.1|3655888_3656461_-	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	A0A291ATS8	Pandoravirus	28.9	1.5e-11
AXX03732.1|3656450_3657008_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03733.1|3657031_3657505_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
AXX03734.1|3657476_3658589_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AXX03735.1|3658718_3659234_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.3	8.9e-19
AXX03736.1|3659252_3660200_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	37.2	1.3e-07
>prophage 273
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3680134	3685705	4496886		Tupanvirus(33.33%)	7	NA	NA
AXX03773.1|3680134_3681319_-	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	27.2	4.0e-14
AXX03774.1|3681386_3683501_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.1	5.2e-57
AXX03775.1|3683595_3684066_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
AXX03776.1|3684162_3684537_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
AXX03777.1|3684663_3684951_-	sulfurtransferase TusB	NA	NA	NA	NA	NA
AXX03778.1|3684959_3685319_-	sulfurtransferase TusC	NA	NA	NA	NA	NA
AXX03779.1|3685318_3685705_-	sulfurtransferase TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	37.5	4.8e-17
>prophage 274
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3691289	3706698	4496886		Tupanvirus(12.5%)	14	NA	NA
AXX03787.1|3691289_3693200_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	33.3	8.0e-73
AXX03788.1|3693555_3694677_+	toxic anion resistance protein	NA	NA	NA	NA	NA
AXX03789.1|3694731_3695706_+	hypothetical protein	NA	NA	NA	NA	NA
AXX03790.1|3695783_3697274_-	nicotinate phosphoribosyltransferase	NA	A0A1I9SAE5	Rhodococcus_phage	55.5	2.3e-144
AXX03791.1|3697285_3698143_-	ribose-phosphate pyrophosphokinase	NA	G0X553	Salmonella_phage	45.7	2.0e-52
AXX03792.1|3698339_3699059_+	NUDIX domain-containing protein	NA	G3MA14	Bacillus_virus	29.4	8.6e-20
AXX03793.1|3699131_3700148_+	hydrolase	NA	NA	NA	NA	NA
AXX03794.1|3700148_3700367_+	hypothetical protein	NA	A0A2H4J8A7	uncultured_Caudovirales_phage	41.8	2.8e-06
AXX03795.1|3700415_3701285_+	phosphoribulokinase	NA	NA	NA	NA	NA
AXX03796.1|3701329_3701737_-	OsmC family protein	NA	NA	NA	NA	NA
AXX03797.1|3702047_3702680_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA	NA
AXX03798.1|3702742_3704827_+	hypothetical protein	NA	H9YQA8	environmental_Halophage	81.6	6.3e-63
AXX04652.1|3704827_3706048_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.2	4.8e-31
AXX03799.1|3706134_3706698_-	aminodeoxychorismate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	60.0	1.1e-62
>prophage 275
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3722591	3723410	4496886		Vibrio_phage(100.0%)	1	NA	NA
AXX03816.1|3722591_3723410_-	adenine-specific DNA-methyltransferase	NA	A0A1S6L1V5	Vibrio_phage	49.1	1.3e-67
>prophage 276
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3726841	3728095	4496886		Enterobacteria_phage(100.0%)	1	NA	NA
AXX03820.1|3726841_3728095_-	DNA transporter HofQ	NA	A7BJY1	Enterobacteria_phage	21.9	3.2e-14
>prophage 277
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3740203	3743946	4496886		Bacillus_phage(66.67%)	3	NA	NA
AXX03832.1|3740203_3741823_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	51.5	1.4e-139
AXX03833.1|3741883_3743230_-	two-component system sensor histidine kinase EnvZ	NA	W8CYF6	Bacillus_phage	22.5	1.2e-09
AXX03834.1|3743226_3743946_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.7	3.5e-29
>prophage 278
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3753359	3758364	4496886		Morganella_phage(50.0%)	3	NA	NA
AXX03844.1|3753359_3753572_-	RNA chaperone/antiterminator CspA	NA	A0A1W6JNX5	Morganella_phage	70.0	6.0e-22
AXX03845.1|3753841_3755950_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
AXX03846.1|3755961_3758364_-	maltodextrin phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	5.6e-15
>prophage 279
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3761872	3762631	4496886		Escherichia_phage(100.0%)	1	NA	NA
AXX03848.1|3761872_3762631_-	DeoR/GlpR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.7	5.7e-22
>prophage 280
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3765778	3770306	4496886		Bacillus_phage(50.0%)	3	NA	NA
AXX03852.1|3765778_3767338_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.6	2.0e-13
AXX03853.1|3767328_3767790_-	hypothetical protein	NA	NA	NA	NA	NA
AXX03854.1|3767858_3770306_-	glycogen phosphorylase	NA	A0A140XAG6	Dickeya_phage	83.3	2.1e-33
>prophage 281
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3788925	3790736	4496886		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
AXX03868.1|3788925_3789666_-	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	28.2	8.0e-13
AXX03869.1|3789662_3790736_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	34.2	2.2e-19
>prophage 282
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3794093	3796304	4496886		Escherichia_phage(33.33%)	4	NA	NA
AXX03873.1|3794093_3794462_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A222YZ88	Escherichia_phage	47.4	5.0e-24
AXX03874.1|3794461_3794683_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
AXX03875.1|3794821_3795535_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF	NA	G9BWD6	Planktothrix_phage	28.2	3.1e-14
AXX03876.1|3795536_3796304_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	7.5e-14
>prophage 283
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3802964	3808726	4496886		Klosneuvirus(25.0%)	5	NA	NA
AXX03884.1|3802964_3804230_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.2	1.6e-29
AXX03885.1|3804348_3805842_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	27.8	6.6e-14
AXX03886.1|3805890_3806748_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	41.9	2.7e-44
AXX03887.1|3807009_3808080_-	cell division protein FtsX	NA	NA	NA	NA	NA
AXX03888.1|3808057_3808726_-	cell division ATP-binding protein FtsE	NA	A0A2H4PQG7	Staphylococcus_phage	27.1	8.6e-14
>prophage 284
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3812132	3815083	4496886		Dickeya_phage(50.0%)	2	NA	NA
AXX03893.1|3812132_3812759_+	lysoplasmalogenase	NA	A0A140XAH6	Dickeya_phage	59.3	1.0e-29
AXX03894.1|3812866_3815083_+	zinc/cadmium/mercury/lead-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	36.7	1.1e-110
>prophage 285
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3818376	3819493	4496886		Dickeya_phage(50.0%)	2	NA	NA
AXX03898.1|3818376_3818622_-	sulfurtransferase TusA	NA	A0A140XB86	Dickeya_phage	83.3	1.6e-10
AXX03899.1|3818827_3819493_+	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	NA	A0A2I7SAW6	Vibrio_phage	55.4	5.3e-56
>prophage 286
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3822569	3827991	4496886		Bacillus_phage(100.0%)	5	NA	NA
AXX03903.1|3822569_3823082_-	hypothetical protein	NA	S5MM68	Bacillus_phage	38.1	5.4e-16
AXX03904.1|3823376_3824792_+	glutamine synthetase	NA	NA	NA	NA	NA
AXX03905.1|3825261_3825696_-	copper-binding protein	NA	NA	NA	NA	NA
AXX03906.1|3825913_3827314_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.6	3.2e-18
AXX03907.1|3827310_3827991_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
>prophage 287
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3833085	3836542	4496886		Listeria_phage(50.0%)	3	NA	NA
AXX03913.1|3833085_3833823_+	peptidase M23	NA	A8ATH6	Listeria_phage	41.0	1.0e-12
AXX03914.1|3833856_3834054_-	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
AXX03915.1|3834094_3836542_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.3	1.3e-83
>prophage 288
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3840510	3842884	4496886	transposase	Stx2-converting_phage(100.0%)	3	NA	NA
AXX03918.1|3840510_3842100_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	65.9	4.3e-189
AXX03919.1|3842129_3842480_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	64.7	3.1e-39
AXX03920.1|3842476_3842884_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	40.2	1.4e-14
>prophage 289
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3845985	3850743	4496886	transposase	Bacillus_phage(40.0%)	6	NA	NA
AXX03924.1|3845985_3846210_+	hypothetical protein	NA	Q6QLL3	Human_immunodeficiency_virus	94.7	4.9e-14
AXX03925.1|3846247_3847228_-|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	2.8e-186
AXX03926.1|3847414_3848095_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.0	2.7e-31
AXX03927.1|3848087_3849569_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	30.1	1.8e-27
AXX03928.1|3849813_3850245_+	silver-binding protein SilE	NA	NA	NA	NA	NA
AXX03929.1|3850392_3850743_+	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	61.4	8.1e-16
>prophage 290
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3866044	3868087	4496886		Indivirus(100.0%)	1	NA	NA
AXX03942.1|3866044_3868087_-	oligopeptidase A	NA	A0A1V0SD92	Indivirus	22.3	4.9e-44
>prophage 291
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3873379	3874581	4496886		Stx_converting_phage(50.0%)	2	NA	NA
AXX03948.1|3873379_3873778_+	TIGR00156 family protein	NA	A0A1I9LJU6	Stx_converting_phage	35.7	4.9e-09
AXX03949.1|3873822_3874581_-	KR domain-containing protein	NA	Q06VL0	Trichoplusia_ni_ascovirus	25.1	2.8e-13
>prophage 292
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3902483	3904479	4496886		Bacillus_virus(50.0%)	2	NA	NA
AXX03968.1|3902483_3903497_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.4	8.7e-18
AXX03969.1|3903483_3904479_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	2.3e-15
>prophage 293
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3915732	3918475	4496886		Streptococcus_phage(50.0%)	2	NA	NA
AXX03980.1|3915732_3916173_+	N-acetyltransferase	NA	A0A1X9I6I8	Streptococcus_phage	32.9	6.2e-13
AXX03981.1|3916141_3918475_-	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	A0A077SK27	Escherichia_phage	30.5	1.2e-73
>prophage 294
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3931771	3932764	4496886		Escherichia_coli_O157_typing_phage(100.0%)	1	NA	NA
AXX03996.1|3931771_3932764_+	acetyltransferase	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.3	1.2e-11
>prophage 295
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3938603	3940145	4496886		Staphylococcus_phage(100.0%)	1	NA	NA
AXX04002.1|3938603_3940145_+	xylose ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	3.6e-15
>prophage 296
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3951659	3958450	4496886	transposase,integrase	uncultured_Caudovirales_phage(60.0%)	7	3948807:3948821	3959248:3959262
3948807:3948821	attL	CAGCGGCAGTTCGCG	NA	NA	NA	NA
AXX04010.1|3951659_3952865_+|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	69.7	5.4e-160
AXX04011.1|3952905_3953886_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	2.8e-186
AXX04012.1|3954142_3954493_+	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	51.9	8.1e-24
AXX04013.1|3954540_3954906_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA	NA
AXX04014.1|3954923_3956675_+	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
AXX04015.1|3956722_3958012_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	74.2	1.0e-172
AXX04016.1|3958024_3958450_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	72.9	1.7e-52
3959248:3959262	attR	CAGCGGCAGTTCGCG	NA	NA	NA	NA
>prophage 297
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3961915	3969663	4496886		uncultured_Caudovirales_phage(75.0%)	7	NA	NA
AXX04021.1|3961915_3962629_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	73.0	4.3e-96
AXX04022.1|3962630_3962954_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AXX04023.1|3963405_3964611_-	MFS transporter	NA	NA	NA	NA	NA
AXX04024.1|3964793_3965621_-	universal stress protein	NA	A0A2H4J154	uncultured_Caudovirales_phage	42.0	2.2e-51
AXX04025.1|3965639_3967115_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	74.0	6.2e-198
AXX04026.1|3968087_3969110_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
AXX04657.1|3969459_3969663_-	AlpA family phage regulatory protein	NA	A0A1V0E8E5	Vibrio_phage	49.0	2.9e-05
>prophage 298
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3973687	3974509	4496886		Yersinia_phage(100.0%)	1	NA	NA
AXX04031.1|3973687_3974509_+	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	37.6	1.2e-44
>prophage 299
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3981063	3983262	4496886		Acinetobacter_phage(100.0%)	1	NA	NA
AXX04043.1|3981063_3983262_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	A0A0P0I429	Acinetobacter_phage	25.8	5.6e-38
>prophage 300
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	3988458	3993885	4496886	protease	Tupanvirus(33.33%)	6	NA	NA
AXX04049.1|3988458_3989505_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	43.5	1.6e-70
AXX04050.1|3989556_3990585_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXX04051.1|3990666_3991071_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AXX04052.1|3991199_3991850_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXX04053.1|3991850_3993212_-	HAMP domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	24.7	1.4e-07
AXX04054.1|3993204_3993885_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.7	6.4e-33
>prophage 301
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4001109	4003178	4496886		Feldmannia_irregularis_virus(50.0%)	2	NA	NA
AXX04063.1|4001109_4001808_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	3.1e-06
AXX04064.1|4001804_4003178_+	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.3	3.2e-15
>prophage 302
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4006258	4015743	4496886		Rhizobium_phage(20.0%)	9	NA	NA
AXX04069.1|4006258_4006510_-	glutaredoxin 3	NA	V9QKN6	Rhizobium_phage	53.4	3.8e-15
AXX04070.1|4006530_4006962_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AXX04071.1|4007205_4008753_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
AXX04072.1|4008762_4010046_+	murein hydrolase activator EnvC	NA	A0A2K9VGT1	Pontimonas_phage	34.0	3.7e-05
AXX04073.1|4010049_4010991_+	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
AXX04074.1|4011022_4011823_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AXX04075.1|4012350_4013376_-	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	84.6	2.1e-19
AXX04076.1|4013385_4014582_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	28.5	5.8e-37
AXX04077.1|4014810_4015743_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	R9S880	Prochlorococcus_phage	36.8	2.5e-35
>prophage 303
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4022832	4023825	4496886		Catovirus(100.0%)	1	NA	NA
AXX04084.1|4022832_4023825_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	34.5	4.5e-11
>prophage 304
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4028676	4033202	4496886		uncultured_Mediterranean_phage(25.0%)	7	NA	NA
AXX04089.1|4028676_4029156_+	phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	43.3	7.0e-26
AXX04090.1|4029156_4029966_-	formamidopyrimidine-DNA glycosylase	NA	F8WPX6	Bacillus_phage	31.3	3.4e-25
AXX04091.1|4030079_4030247_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AXX04092.1|4030267_4030504_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AXX04093.1|4030718_4031378_-	JAB domain-containing protein	NA	NA	NA	NA	NA
AXX04094.1|4031554_4032766_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	34.1	2.7e-42
AXX04095.1|4032746_4033202_+	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	60.1	1.9e-49
>prophage 305
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4037206	4042243	4496886		Bacillus_virus(33.33%)	5	NA	NA
AXX04101.1|4037206_4038892_-	DNA ligase B	NA	G3M9X7	Bacillus_virus	23.0	4.5e-19
AXX04102.1|4038959_4039151_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04103.1|4039149_4039773_+	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	35.6	8.2e-19
AXX04104.1|4039827_4040103_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AXX04105.1|4040122_4042243_+	bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase	NA	A0A291L9W9	Bordetella_phage	34.5	4.8e-10
>prophage 306
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4053211	4054612	4496886		environmental_Halophage(100.0%)	1	NA	NA
AXX04114.1|4053211_4054612_+	xanthine permease XanP	NA	H9YQ34	environmental_Halophage	95.9	8.8e-69
>prophage 307
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4059704	4062558	4496886		Escherichia_phage(50.0%)	3	NA	NA
AXX04120.1|4059704_4060511_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	29.8	1.0e-24
AXX04121.1|4060547_4061447_-	sugar kinase	NA	NA	NA	NA	NA
AXX04122.1|4061658_4062558_+	sulfolactaldehyde 3-reductase	NA	D2K0C8	Staphylococcus_phage	90.7	7.4e-61
>prophage 308
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4076147	4078615	4496886		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
AXX04133.1|4076147_4077197_+	nitrogen regulation protein NR(II)	NA	Q8QKV7	Ectocarpus_siliculosus_virus	27.0	3.4e-09
AXX04659.1|4077205_4078615_+	nitrogen regulation protein NR(I)	NA	Q56AR1	Bacillus_thuringiensis_phage	26.4	4.0e-05
>prophage 309
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4082492	4085276	4496886		Enterococcus_phage(100.0%)	1	NA	NA
AXX04136.1|4082492_4085276_-	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	29.2	3.2e-46
>prophage 310
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4101435	4105432	4496886		Tupanvirus(50.0%)	3	NA	NA
AXX04147.1|4101435_4102941_-	ribose ABC transporter ATP-binding protein RbsA	NA	A0A2K9L0W2	Tupanvirus	22.7	8.9e-19
AXX04148.1|4102948_4103368_-	D-ribose pyranase	NA	NA	NA	NA	NA
AXX04149.1|4103560_4105432_-	low affinity potassium transport system protein kup	NA	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	29.5	4.6e-65
>prophage 311
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4108598	4109591	4496886		Heterosigma_akashiwo_virus(100.0%)	1	NA	NA
AXX04152.1|4108598_4109591_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	36.8	7.9e-48
>prophage 312
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4121532	4130078	4496886		Chrysochromulina_ericina_virus(25.0%)	8	NA	NA
AXX04166.1|4121532_4122903_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7P8	Chrysochromulina_ericina_virus	35.4	1.3e-32
AXX04167.1|4123130_4124960_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	43.0	1.4e-130
AXX04168.1|4125039_4125660_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04169.1|4125699_4126026_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04170.1|4126224_4127265_+	phosphate ABC transporter substrate-binding protein PstS	NA	E3SKK5	Synechococcus_phage	37.8	4.9e-48
AXX04171.1|4127404_4128364_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AXX04172.1|4128363_4129254_+	phosphate ABC transporter permease PtsA	NA	NA	NA	NA	NA
AXX04173.1|4129304_4130078_+	phosphate ABC transporter ATP-binding protein PstB	NA	W8CYL7	Bacillus_phage	31.7	5.3e-15
>prophage 313
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4133330	4134668	4496886		Moraxella_phage(100.0%)	1	NA	NA
AXX04177.1|4133330_4134668_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	37.1	2.4e-63
>prophage 314
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4144945	4152453	4496886		Staphylococcus_phage(33.33%)	8	NA	NA
AXX04190.1|4144945_4145203_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	56.7	1.9e-17
AXX04191.1|4145166_4145526_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AXX04192.1|4145540_4145681_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AXX04193.1|4146289_4147675_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AXX04194.1|4147679_4148780_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	35.0	2.6e-52
AXX04195.1|4148754_4148946_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04196.1|4148936_4150010_+	DNA replication and repair protein RecF	NA	NA	NA	NA	NA
AXX04197.1|4150038_4152453_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.2	8.2e-115
>prophage 315
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4156497	4157646	4496886		Oenococcus_phage(100.0%)	1	NA	NA
AXX04203.1|4156497_4157646_+	D-galactonate dehydratase	NA	Q6A202	Oenococcus_phage	32.8	3.6e-52
>prophage 316
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4160712	4164614	4496886		Paramecium_bursaria_Chlorella_virus(33.33%)	5	NA	NA
AXX04206.1|4160712_4161645_+	2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	28.9	2.1e-18
AXX04207.1|4161706_4162969_+	DUF3748 domain-containing protein	NA	NA	NA	NA	NA
AXX04208.1|4162969_4163296_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA	NA
AXX04209.1|4163600_4164017_+	heat shock protein IbpA	NA	E3SM62	Prochlorococcus_phage	38.0	1.2e-18
AXX04210.1|4164128_4164614_+	heat shock chaperone IbpB	NA	A0A1D8KPX5	Synechococcus_phage	36.4	4.8e-14
>prophage 317
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4170418	4171597	4496886		Salmonella_phage(100.0%)	1	NA	NA
AXX04217.1|4170418_4171597_-	multidrug transporter EmrD	NA	S4TR35	Salmonella_phage	25.8	9.5e-16
>prophage 318
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4175240	4254556	4496886	tail,integrase,head,plate,transposase	Burkholderia_virus(35.71%)	84	4179696:4179710	4212492:4212506
AXX04223.1|4175240_4175630_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	53.4	3.8e-30
AXX04224.1|4176044_4176260_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04225.1|4176256_4176946_-	DUF2786 domain-containing protein	NA	A0A1W6DYA0	Aeromonas_phage	33.9	5.9e-26
AXX04226.1|4176932_4177229_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04227.1|4177244_4177517_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04228.1|4177513_4177702_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04229.1|4177780_4178392_-	DUF3164 domain-containing protein	NA	A0A2D1GNM4	Pseudomonas_phage	68.5	7.2e-76
AXX04230.1|4178409_4178679_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04231.1|4178681_4179848_-	hypothetical protein	NA	A4JWN1	Burkholderia_virus	61.1	1.3e-121
4179696:4179710	attL	CGCCAGACGCTGGCG	NA	NA	NA	NA
AXX04232.1|4179858_4181628_-|integrase	integrase	integrase	Q6QIE0	Burkholderia_phage	68.0	8.1e-229
AXX04233.1|4181631_4182540_-	DUF3102 domain-containing protein	NA	A4JWN3	Burkholderia_virus	55.4	4.8e-76
AXX04234.1|4182549_4182855_-	IclR family transcriptional regulator	NA	Q5ZR02	Pseudomonas_phage	58.0	9.2e-24
AXX04235.1|4182851_4183076_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04236.1|4183164_4183575_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXX04237.1|4183610_4184144_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04238.1|4184191_4184962_-	restriction endonuclease subunit M	NA	A2I2Y7	Vibrio_virus	64.9	7.6e-99
AXX04239.1|4185209_4185560_+	hypothetical protein	NA	A4JWP3	Burkholderia_virus	54.8	4.0e-23
AXX04240.1|4185559_4186297_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	58.8	1.9e-62
AXX04241.1|4186286_4186940_+	hypothetical protein	NA	J9SVN7	Pseudomonas_phage	30.2	3.4e-07
AXX04242.1|4186936_4187269_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	47.7	1.1e-17
AXX04243.1|4187261_4187573_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	7.2e-32
AXX04244.1|4187572_4188118_+	DUF3486 domain-containing protein	NA	A4JWJ3	Burkholderia_virus	67.6	1.2e-58
AXX04245.1|4188114_4189638_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.2	1.7e-182
AXX04246.1|4189637_4191134_+	DUF935 domain-containing protein	NA	Q6QIC0	Burkholderia_phage	61.7	2.8e-174
AXX04247.1|4191114_4191936_+|head	phage head morphogenesis protein	head	Q6QIB9	Burkholderia_phage	62.3	6.9e-98
AXX04248.1|4191938_4192397_+	phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	43.0	3.8e-29
AXX04249.1|4192611_4193709_+	peptidase	NA	A4JWJ9	Burkholderia_virus	49.6	6.6e-96
AXX04250.1|4193722_4194676_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	43.6	3.7e-63
AXX04251.1|4194686_4195043_+	DUF2190 domain-containing protein	NA	NA	NA	NA	NA
AXX04252.1|4195044_4195491_+	DUF1320 domain-containing protein	NA	A4JWK2	Burkholderia_virus	52.3	6.1e-32
AXX04253.1|4195490_4195955_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	52.3	3.3e-41
AXX04254.1|4195951_4196206_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04255.1|4196195_4197623_+|tail	phage tail protein	tail	A4JWK5	Burkholderia_virus	78.4	5.7e-217
AXX04256.1|4197622_4198144_+|tail	phage major tail tube protein	tail	A4JWK6	Burkholderia_virus	68.8	1.4e-67
AXX04257.1|4198146_4198428_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04258.1|4198526_4198841_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AXX04259.1|4198806_4198944_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AXX04260.1|4199036_4201502_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	42.6	9.7e-172
AXX04261.1|4201501_4202386_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	45.4	2.5e-53
AXX04262.1|4202382_4202598_+	hypothetical protein	NA	Q6QIA3	Burkholderia_phage	57.1	1.2e-17
AXX04263.1|4202585_4203755_+	phage protein D	NA	Q6QIA2	Burkholderia_phage	48.9	4.6e-87
AXX04264.1|4203754_4204267_+|plate	phage baseplate assembly protein V	plate	A4JWL4	Burkholderia_virus	38.5	9.4e-21
AXX04265.1|4204321_4204669_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	63.3	7.8e-35
AXX04266.1|4204659_4205763_+|plate	baseplate protein	plate	A4JWL6	Burkholderia_virus	53.8	1.9e-106
AXX04267.1|4205755_4206334_+|tail	phage tail protein I	tail	A4JWL7	Burkholderia_virus	66.3	1.3e-66
AXX04268.1|4207210_4207696_+	hypothetical protein	NA	U5P083	Shigella_phage	36.4	1.3e-14
AXX04269.1|4207667_4207802_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04270.1|4208029_4208425_-|tail	tail fiber assembly protein	tail	U5P083	Shigella_phage	42.0	2.3e-19
AXX04271.1|4208823_4209405_+	DNA-invertase Hin	NA	A0A0A7NPV4	Enterobacteria_phage	71.5	2.2e-66
AXX04272.1|4210477_4211713_+	DotU family type VI secretion system protein	NA	NA	NA	NA	NA
AXX04273.1|4211714_4215335_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
4212492:4212506	attR	CGCCAGCGTCTGGCG	NA	NA	NA	NA
AXX04274.1|4215351_4216062_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
AXX04275.1|4216071_4217094_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
AXX04276.1|4217169_4217694_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AXX04277.1|4217697_4219197_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AXX04278.1|4219263_4219683_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04279.1|4219893_4220295_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04280.1|4220291_4220786_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04281.1|4221042_4221525_+	Hcp1 family type VI secretion system effector	NA	NA	NA	NA	NA
AXX04282.1|4221572_4221941_+	type VI secretion protein	NA	NA	NA	NA	NA
AXX04283.1|4221961_4222333_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04284.1|4222395_4223385_+	hypothetical protein	NA	A0A2H4J6N0	uncultured_Caudovirales_phage	31.9	1.6e-29
AXX04285.1|4223381_4223795_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04286.1|4223894_4225826_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
AXX04287.1|4225822_4226617_+	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
AXX04288.1|4226635_4227640_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04289.1|4227665_4228499_+	protein of avirulence locus ImpE	NA	NA	NA	NA	NA
AXX04290.1|4228491_4229064_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AXX04291.1|4229066_4230938_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AXX04292.1|4230934_4231978_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AXX04293.1|4232194_4234810_+	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	31.0	9.3e-80
AXX04294.1|4234840_4236274_+	serine/threonine protein kinase	NA	M1HKB5	Acanthocystis_turfacea_Chlorella_virus	26.9	2.7e-09
AXX04295.1|4236398_4237829_+	phospholipase	NA	NA	NA	NA	NA
AXX04296.1|4237825_4238587_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AXX04297.1|4238727_4240866_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	28.7	1.1e-43
AXX04298.1|4240867_4242022_+	DUF2169 domain-containing protein	NA	NA	NA	NA	NA
AXX04299.1|4243406_4244087_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AXX04663.1|4244833_4248325_+	type IV secretion protein Rhs	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	40.9	1.5e-37
AXX04300.1|4248324_4248867_+	DUF4303 domain-containing protein	NA	NA	NA	NA	NA
AXX04301.1|4249351_4249606_+	DUF4303 domain-containing protein	NA	NA	NA	NA	NA
AXX04302.1|4249669_4250104_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04664.1|4250204_4250723_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04303.1|4251342_4252323_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	2.8e-186
AXX04304.1|4252624_4254556_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	28.7	6.0e-44
>prophage 319
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4260376	4261885	4496886		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXX04308.1|4260376_4261885_+	Rhs-family protein	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	34.0	9.3e-24
>prophage 320
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4280006	4281854	4496886	tRNA	Tupanvirus(100.0%)	1	NA	NA
AXX04329.1|4280006_4281854_+|tRNA	selenocysteinyl-tRNA-specific translation elongation factor SelB	tRNA	A0A2K9KZ60	Tupanvirus	25.1	4.0e-13
>prophage 321
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4292668	4295719	4496886		Escherichia_phage(100.0%)	1	NA	NA
AXX04341.1|4292668_4295719_-	formate dehydrogenase-N subunit alpha	NA	A0A077SK27	Escherichia_phage	24.5	7.6e-09
>prophage 322
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4312373	4312994	4496886		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
AXX04667.1|4312373_4312994_+	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	58.4	1.9e-63
>prophage 323
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4317950	4325190	4496886		Escherichia_phage(33.33%)	9	NA	NA
AXX04360.1|4317950_4318271_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2I6TCA4	Escherichia_phage	50.5	6.3e-23
AXX04361.1|4318260_4318545_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXX04362.1|4318573_4318936_-	hypothetical protein	NA	NA	NA	NA	NA
AXX04363.1|4319064_4320582_-	glycerol kinase	NA	NA	NA	NA	NA
AXX04364.1|4320600_4321449_-	aquaporin	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	28.4	3.2e-13
AXX04365.1|4321884_4322124_+	cell division protein ZapB	NA	NA	NA	NA	NA
AXX04366.1|4322174_4322660_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA	NA
AXX04367.1|4322752_4323685_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AXX04368.1|4323858_4325190_-	HslU--HslV peptidase ATPase subunit	NA	A0A173GE36	Erwinia_phage	29.3	9.3e-44
>prophage 324
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4360248	4362099	4496886		Acinetobacter_phage(100.0%)	1	NA	NA
AXX04669.1|4360248_4362099_+	vitamin B12 transporter BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.9	7.1e-10
>prophage 325
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4372115	4373762	4496886		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
AXX04400.1|4372115_4373762_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CRC5	Ostreococcus_lucimarinus_virus	33.8	1.9e-67
>prophage 326
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4381778	4387067	4496886		Bacillus_phage(33.33%)	4	NA	NA
AXX04407.1|4381778_4383800_+	DNA helicase Rep	NA	A7KV33	Bacillus_phage	36.9	1.4e-112
AXX04408.1|4383864_4385349_-	guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase	NA	NA	NA	NA	NA
AXX04409.1|4385354_4386620_-	ATP-dependent RNA helicase RhlB	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.9	1.6e-40
AXX04410.1|4386737_4387067_+	thioredoxin TrxA	NA	A0A1V0SD63	Indivirus	39.6	1.9e-14
>prophage 327
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4391157	4395388	4496886		Catovirus(33.33%)	4	NA	NA
AXX04414.1|4391157_4392288_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	32.2	3.3e-26
AXX04415.1|4392284_4393547_+	UDP-N-acetyl-D-mannosamine dehydrogenase	NA	M1HNJ7	Paramecium_bursaria_Chlorella_virus	26.8	1.6e-21
AXX04416.1|4393568_4394252_+	dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase	NA	NA	NA	NA	NA
AXX04417.1|4394257_4395388_+	dTDP-4-amino-4,6-dideoxygalactose transaminase	NA	A0A0F7LAY0	uncultured_marine_virus	43.5	2.0e-18
>prophage 328
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4417917	4421841	4496886		Gordonia_phage(50.0%)	3	NA	NA
AXX04434.1|4417917_4418823_+	tyrosine recombinase XerC	NA	A0A1B3B212	Gordonia_phage	30.5	1.6e-15
AXX04435.1|4418822_4419539_+	5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB	NA	NA	NA	NA	NA
AXX04436.1|4419678_4421841_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	2.7e-117
>prophage 329
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4426902	4428732	4496886		Catovirus(100.0%)	1	NA	NA
AXX04443.1|4426902_4428732_+	DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	38.4	2.8e-83
>prophage 330
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4441712	4445022	4496886		Ostreococcus_tauri_virus(50.0%)	4	NA	NA
AXX04455.1|4441712_4443353_+	ubiquinone biosynthesis protein UbiB	NA	C7U092	Ostreococcus_tauri_virus	28.6	3.4e-40
AXX04456.1|4443431_4443695_+	Sec-independent protein translocase protein TatA	NA	NA	NA	NA	NA
AXX04457.1|4443698_4444259_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
AXX04458.1|4444260_4445022_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	28.2	5.7e-22
>prophage 331
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4454655	4455267	4496886		Streptococcus_phage(100.0%)	1	NA	NA
AXX04469.1|4454655_4455267_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	34.2	2.8e-19
>prophage 332
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4464892	4468126	4496886		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
AXX04474.1|4464892_4465864_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	31.6	4.0e-28
AXX04475.1|4466941_4468126_+	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	27.2	4.0e-14
>prophage 333
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4472119	4480448	4496886		Chrysochromulina_ericina_virus(50.0%)	2	NA	NA
AXX04482.1|4472119_4476148_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	29.0	9.4e-23
AXX04483.1|4476224_4480448_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.6	1.2e-68
>prophage 334
CP027109	Cronobacter sakazakii strain CS-09 chromosome, complete genome	4496886	4491881	4493646	4496886		Bandra_megavirus(50.0%)	3	NA	NA
AXX04497.1|4491881_4492553_+	endonuclease V	NA	A0A2K9V7A2	Bandra_megavirus	32.1	1.4e-19
AXX04498.1|4492596_4493187_+	DUF416 domain-containing protein	NA	NA	NA	NA	NA
AXX04499.1|4493373_4493646_+	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	56.7	9.4e-20
>prophage 1
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	0	13660	131195	protease	Bacillus_phage(100.0%)	14	NA	NA
AXX04673.1|1337_1955_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AXX04674.1|2053_2821_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04675.1|2944_4003_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04676.1|4007_4538_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXX04677.1|4834_6043_+	MFS transporter	NA	NA	NA	NA	NA
AXX04678.1|6358_7297_+|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
AXX04679.1|7545_8088_+	CpmJ protein	NA	NA	NA	NA	NA
AXX04779.1|8132_8624_+	CpmK protein	NA	NA	NA	NA	NA
AXX04680.1|8656_9352_+	YafY family transcriptional regulator	NA	NA	NA	NA	NA
AXX04681.1|9408_9792_+	drug:proton antiporter	NA	NA	NA	NA	NA
AXX04682.1|9845_10736_-	transcriptional regulator	NA	NA	NA	NA	NA
AXX04683.1|10897_11668_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AXX04684.1|11792_12485_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.2	1.2e-26
AXX04685.1|12481_13660_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	24.4	3.8e-17
>prophage 2
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	21367	22675	131195		Burkholderia_virus(100.0%)	1	NA	NA
AXX04692.1|21367_22675_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	36.8	6.1e-64
>prophage 3
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	29608	40228	131195		Enterobacteria_phage(20.0%)	12	NA	NA
AXX04703.1|29608_30352_+	helix-turn-helix-type transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	48.2	1.1e-46
AXX04704.1|30430_32341_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	1.3e-14
AXX04705.1|32773_33160_+	glyoxalase	NA	NA	NA	NA	NA
AXX04706.1|33197_33713_-	N-acetyltransferase	NA	NA	NA	NA	NA
AXX04707.1|33814_34138_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AXX04708.1|34130_34529_+	amino acid-binding protein	NA	NA	NA	NA	NA
AXX04709.1|34501_35227_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AXX04710.1|35308_36130_+	alpha/beta hydrolase	NA	A0A220NRX7	Mycobacterium_phage	29.3	3.6e-14
AXX04711.1|36176_37553_-	PTS sugar transporter	NA	NA	NA	NA	NA
AXX04712.1|37832_39032_+	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	28.4	4.4e-37
AXX04713.1|39019_39739_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AXX04714.1|39934_40228_-	NINE protein	NA	M4ZS56	Bacillus_phage	68.8	3.6e-17
>prophage 4
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	47530	53001	131195		uncultured_Caudovirales_phage(75.0%)	6	NA	NA
AXX04722.1|47530_47944_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	68.1	5.2e-46
AXX04723.1|47988_49272_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	73.1	2.5e-171
AXX04724.1|49359_49695_-	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	61.9	2.0e-24
AXX04725.1|49784_50672_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AXX04726.1|50696_51575_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AXX04727.1|51666_53001_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.2	3.4e-14
>prophage 5
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	60132	66995	131195		Cronobacter_phage(50.0%)	3	NA	NA
AXX04733.1|60132_62793_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	32.3	6.7e-94
AXX04783.1|63368_63800_+	hypothetical protein	NA	NA	NA	NA	NA
AXX04734.1|64085_66995_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	43.5	7.3e-09
>prophage 6
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	75322	76081	131195		Indivirus(100.0%)	1	NA	NA
AXX04745.1|75322_76081_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.4	4.4e-14
>prophage 7
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	80897	81872	131195	integrase	Gordonia_phage(100.0%)	1	76740:76753	82065:82078
76740:76753	attL	TGCCGATGCCGAGT	NA	NA	NA	NA
AXX04786.1|80897_81872_+|integrase	integrase	integrase	A0A0K0N6I5	Gordonia_phage	37.3	4.0e-12
AXX04786.1|80897_81872_+|integrase	integrase	integrase	A0A0K0N6I5	Gordonia_phage	37.3	4.0e-12
82065:82078	attR	ACTCGGCATCGGCA	NA	NA	NA	NA
>prophage 8
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	90017	91676	131195		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXX04754.1|90017_91676_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.9	1.1e-09
>prophage 9
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	95950	97897	131195		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AXX04759.1|95950_97897_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.3	1.1e-13
>prophage 10
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	101062	103777	131195		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
AXX04762.1|101062_103777_-	magnesium-translocating P-type ATPase	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	24.6	2.1e-34
>prophage 11
CP027110	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09a, complete sequence	131195	128126	130302	131195		Escherichia_phage(100.0%)	2	NA	NA
AXX04777.1|128126_129095_-	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	56.9	1.4e-89
AXX04778.1|129102_130302_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	78.0	6.8e-179
