assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	1	654588-654679	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAACTGCATAAAAGCCTCTAATCGCTAAAG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|169aa|down_4|AP018923.1_658391_658898_+,NA|239aa|down_5|AP018923.1_659059_659776_+,NA|62aa|down_8|AP018923.1_662097_662283_+	NA|209aa|up_9|AP018923.1_644465_645092_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|AP018923.1_645361_646300_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|142aa|up_7|AP018923.1_646510_646936_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|AP018923.1_647214_647691_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|AP018923.1_647730_649026_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_4|AP018923.1_649068_649575_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|AP018923.1_650073_651084_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|139aa|up_2|AP018923.1_651360_651777_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|AP018923.1_651773_653435_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|AP018923.1_653825_654461_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|AP018923.1_654711_655599_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|333aa|down_1|AP018923.1_655699_656698_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|AP018923.1_656752_657472_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|AP018923.1_657455_658256_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|AP018923.1_658391_658898_+	NA	NA|239aa|down_5|AP018923.1_659059_659776_+	NA	NA|263aa|down_6|AP018923.1_659944_660733_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|AP018923.1_660982_661357_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|down_8|AP018923.1_662097_662283_+	NA	NA|310aa|down_9|AP018923.1_662304_663234_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	2	811558-811638	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	13	811584-811612|811584-811612|811584-811612|811584-811612|811584-811612|811584-811612|811584-811612|811584-811612|811584-811612|811584-811612|811584-811612|811584-811612|811584-811612	AP018923.1_2820807-2820835|AP018923.1_367332-367304|AP018923.1_1260485-1260457|AP018923.1_1519583-1519555|AP018923.1_1884003-1883975|AP018923.1_166363-166335|AP018923.1_166421-166393|AP018923.1_274417-274445|AP018923.1_817018-817046|AP018923.1_865745-865773|AP018923.1_914862-914834|AP018923.1_1176581-1176553|AP018923.1_1176692-1176664	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA|75aa|down_5|AP018923.1_816939_817164_-	NA|104aa|up_9|AP018923.1_798176_798488_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|129aa|up_8|AP018923.1_798465_798852_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_7|AP018923.1_798912_799485_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_6|AP018923.1_799898_802430_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|332aa|up_5|AP018923.1_802859_803855_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|up_4|AP018923.1_804263_805103_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|AP018923.1_805276_805927_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|AP018923.1_805923_806160_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|AP018923.1_806428_808414_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|AP018923.1_808421_811268_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|AP018923.1_811874_812807_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|AP018923.1_812812_813652_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|AP018923.1_813659_814145_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|AP018923.1_814152_815592_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|AP018923.1_815658_816594_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|75aa|down_5|AP018923.1_816939_817164_-	NA	NA|304aa|down_6|AP018923.1_817358_818270_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_7|AP018923.1_818266_819262_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_8|AP018923.1_819372_820317_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_9|AP018923.1_820889_821477_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	3	865679-865760	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	865703-865736|865703-865736	AP018923.1_1384939-1384906|AP018923.1_1474677-1474710	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|126aa|up_3|AP018923.1_861787_862165_-,NA	NA|119aa|up_9|AP018923.1_856936_857293_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_8|AP018923.1_857450_857831_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|233aa|up_7|AP018923.1_858009_858708_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|221aa|up_6|AP018923.1_858826_859489_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|244aa|up_5|AP018923.1_859997_860729_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|261aa|up_4|AP018923.1_860854_861637_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|126aa|up_3|AP018923.1_861787_862165_-	NA	NA|631aa|up_2|AP018923.1_862171_864064_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_1|AP018923.1_864060_865146_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|88aa|up_0|AP018923.1_865311_865575_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|AP018923.1_866315_866702_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|AP018923.1_866694_866991_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|AP018923.1_867240_868266_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|AP018923.1_868258_868954_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|AP018923.1_868971_869793_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|AP018923.1_870146_870341_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|AP018923.1_870573_871425_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|AP018923.1_871752_872514_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|AP018923.1_872611_873919_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|AP018923.1_874033_875275_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	4	1048356-1048448	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAAGCCCCTAACAACTAAAAGTTGTAAGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|AP018923.1_1048457_1048592_-,NA|432aa|down_1|AP018923.1_1048743_1050039_+	NA|224aa|up_9|AP018923.1_1036151_1036823_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|AP018923.1_1036815_1039005_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|AP018923.1_1038983_1040468_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|AP018923.1_1040460_1041489_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|AP018923.1_1041491_1042058_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|AP018923.1_1042072_1043551_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|AP018923.1_1043572_1044820_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|AP018923.1_1045084_1045891_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|AP018923.1_1045883_1047284_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|AP018923.1_1047298_1047874_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|AP018923.1_1048457_1048592_-	NA	NA|432aa|down_1|AP018923.1_1048743_1050039_+	NA	NA|391aa|down_2|AP018923.1_1050463_1051636_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|AP018923.1_1051689_1052232_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|AP018923.1_1052385_1052652_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|AP018923.1_1052654_1054373_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|AP018923.1_1054609_1054843_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|AP018923.1_1055040_1056402_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|AP018923.1_1056398_1057418_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|AP018923.1_1057550_1058213_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	5	1249565-1249657	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TAAGAAACACTAATCAATAAATTGATAAG	29	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|AP018923.1_1239376_1240021_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|AP018923.1_1240027_1240669_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|AP018923.1_1241049_1241238_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|AP018923.1_1241680_1242055_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|AP018923.1_1242069_1243716_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|AP018923.1_1243905_1245966_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|186aa|up_3|AP018923.1_1246183_1246741_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|AP018923.1_1246745_1247732_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|AP018923.1_1247724_1248651_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|AP018923.1_1248643_1249378_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|AP018923.1_1249747_1249981_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|AP018923.1_1250096_1250828_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|AP018923.1_1250974_1254541_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|AP018923.1_1254540_1255791_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|AP018923.1_1255777_1256110_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|AP018923.1_1256135_1257503_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|AP018923.1_1257937_1258213_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|AP018923.1_1258400_1258904_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|AP018923.1_1258903_1259641_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|AP018923.1_1259743_1260094_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	6	1733938-1734023	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTGTGTTGGGGCCCCATCCCCAACTT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|49aa|down_3|AP018923.1_1738028_1738175_-	NA|208aa|up_9|AP018923.1_1722674_1723298_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|AP018923.1_1723297_1724566_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|AP018923.1_1724577_1725501_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|AP018923.1_1725503_1726142_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|AP018923.1_1726426_1726735_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|AP018923.1_1726749_1727178_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|AP018923.1_1727181_1727442_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|AP018923.1_1727504_1730135_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|AP018923.1_1730477_1732955_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|AP018923.1_1732956_1733625_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|AP018923.1_1734205_1735324_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|AP018923.1_1735324_1736467_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|AP018923.1_1736778_1737792_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|AP018923.1_1738028_1738175_-	NA	NA|61aa|down_4|AP018923.1_1738214_1738397_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|AP018923.1_1738496_1738919_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|AP018923.1_1739003_1740278_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|AP018923.1_1740438_1741212_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|589aa|down_8|AP018923.1_1741672_1743439_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|421aa|down_9|AP018923.1_1743454_1744717_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	7	1826617-1826703	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACATAGA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|423aa|up_9|AP018923.1_1810994_1812263_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|AP018923.1_1812311_1813433_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|AP018923.1_1813780_1815142_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|AP018923.1_1815489_1817247_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|AP018923.1_1817268_1818237_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|AP018923.1_1818505_1819450_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|AP018923.1_1819449_1820307_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|AP018923.1_1820501_1821731_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|AP018923.1_1822180_1825378_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|AP018923.1_1825398_1826340_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|AP018923.1_1826793_1828092_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|AP018923.1_1828296_1828710_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|AP018923.1_1829014_1829704_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|AP018923.1_1829878_1830934_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_4|AP018923.1_1831249_1832368_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_5|AP018923.1_1832508_1833009_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_6|AP018923.1_1833254_1834457_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_7|AP018923.1_1834544_1835492_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_8|AP018923.1_1835614_1836109_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_9|AP018923.1_1836206_1836977_-	PRK10621, PRK10621, hypothetical protein; Provisional
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	8	2000843-2000970	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_7|AP018923.1_1992997_1993393_-,NA|51aa|up_6|AP018923.1_1993998_1994151_-,NA|54aa|down_0|AP018923.1_2003775_2003937_-,NA|64aa|down_1|AP018923.1_2007192_2007384_-	NA|274aa|up_9|AP018923.1_1990134_1990956_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|AP018923.1_1991416_1992802_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|AP018923.1_1992997_1993393_-	NA	NA|51aa|up_6|AP018923.1_1993998_1994151_-	NA	NA|200aa|up_5|AP018923.1_1994175_1994775_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|AP018923.1_1994933_1995404_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_3|AP018923.1_1995408_1996536_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|AP018923.1_1996686_1997415_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|AP018923.1_1997401_1998859_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|AP018923.1_1999116_2000178_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|54aa|down_0|AP018923.1_2003775_2003937_-	NA	NA|64aa|down_1|AP018923.1_2007192_2007384_-	NA	NA|149aa|down_2|AP018923.1_2009037_2009484_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_3|AP018923.1_2009580_2010531_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_4|AP018923.1_2010536_2010992_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_5|AP018923.1_2011072_2012362_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_6|AP018923.1_2012654_2013749_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_7|AP018923.1_2013940_2015677_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_8|AP018923.1_2015967_2016510_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_9|AP018923.1_2016811_2017849_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	10	2381325-2381410	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	1	2381355-2381380	AP018923.1_1176500-1176475	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_8|AP018923.1_2371896_2372061_+,NA|106aa|up_7|AP018923.1_2372305_2372623_+,NA|57aa|up_0|AP018923.1_2381135_2381306_+,NA	NA|303aa|up_9|AP018923.1_2370855_2371764_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|AP018923.1_2371896_2372061_+	NA	NA|106aa|up_7|AP018923.1_2372305_2372623_+	NA	NA|1056aa|up_6|AP018923.1_2372806_2375974_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|AP018923.1_2376090_2377356_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|255aa|up_4|AP018923.1_2377987_2378752_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|AP018923.1_2378913_2379354_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|AP018923.1_2379346_2380558_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|AP018923.1_2380659_2381010_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|AP018923.1_2381135_2381306_+	NA	NA|341aa|down_0|AP018923.1_2381587_2382610_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|AP018923.1_2382629_2383229_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|AP018923.1_2383235_2383469_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|AP018923.1_2383474_2383921_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|AP018923.1_2383934_2384420_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|AP018923.1_2384416_2385676_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|AP018923.1_2385738_2386233_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|AP018923.1_2386234_2386741_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|AP018923.1_2386771_2387776_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|AP018923.1_2387945_2388551_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	11	2548338-2548416	11	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCATTGTCTCTAGAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|85aa|down_0|AP018923.1_2548726_2548981_+	NA|316aa|up_9|AP018923.1_2536781_2537729_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|up_8|AP018923.1_2537730_2538708_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|up_7|AP018923.1_2538759_2539227_-	pfam06177, QueT, QueT transporter	NA|231aa|up_6|AP018923.1_2539237_2539930_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|up_5|AP018923.1_2539940_2541056_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|up_4|AP018923.1_2541033_2542041_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|up_3|AP018923.1_2542042_2543401_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|229aa|up_2|AP018923.1_2543378_2544065_-	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|578aa|up_1|AP018923.1_2544517_2546251_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|588aa|up_0|AP018923.1_2546275_2548039_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|85aa|down_0|AP018923.1_2548726_2548981_+	NA	NA|129aa|down_1|AP018923.1_2548963_2549350_-	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|381aa|down_2|AP018923.1_2549607_2550750_+	TIGR00045, Glycerate_kinase, glycerate kinase	NA|220aa|down_3|AP018923.1_2550809_2551469_+	PHA02562, 46, endonuclease subunit; Provisional	NA|404aa|down_4|AP018923.1_2551650_2552862_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|158aa|down_5|AP018923.1_2552984_2553458_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|219aa|down_6|AP018923.1_2553570_2554227_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|269aa|down_7|AP018923.1_2554289_2555096_-	TIGR03729, acc_ester, putative phosphoesterase	NA|470aa|down_8|AP018923.1_2555381_2556791_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|693aa|down_9|AP018923.1_2556928_2559007_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
GCA_003573835.1_ASM357383v1	AP018923	Staphylococcus aureus JMUB3031 DNA, complete genome	12	2688523-2688630	12	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|64aa|up_1|AP018923.1_2685514_2685706_+,NA|166aa|down_7|AP018923.1_2696639_2697137_-	NA|702aa|up_9|AP018923.1_2674599_2676705_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|57aa|up_8|AP018923.1_2676773_2676944_-	pfam12669, P12, Virus attachment protein p12 family	NA|665aa|up_7|AP018923.1_2676956_2678951_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|up_6|AP018923.1_2678962_2679190_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|830aa|up_5|AP018923.1_2679405_2681895_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|183aa|up_4|AP018923.1_2682039_2682588_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|515aa|up_3|AP018923.1_2682942_2684487_-	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|200aa|up_2|AP018923.1_2684676_2685276_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|64aa|up_1|AP018923.1_2685514_2685706_+	NA	NA|803aa|up_0|AP018923.1_2685945_2688354_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|69aa|down_0|AP018923.1_2688702_2688909_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|333aa|down_1|AP018923.1_2688998_2689997_-	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|385aa|down_2|AP018923.1_2690019_2691174_-	PRK08068, PRK08068, transaminase; Reviewed	NA|503aa|down_3|AP018923.1_2691600_2693109_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|288aa|down_4|AP018923.1_2693120_2693984_-	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|376aa|down_5|AP018923.1_2694020_2695148_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|498aa|down_6|AP018923.1_2695153_2696647_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|166aa|down_7|AP018923.1_2696639_2697137_-	NA	NA|256aa|down_8|AP018923.1_2697302_2698070_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|down_9|AP018923.1_2698430_2700242_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]
