The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
AP018558	Hydrogenophilus thermoluteolus TH-1 DNA, complete genome	2223143	28010	42956	2223143	tRNA,protease	uncultured_Mediterranean_phage(11.11%)	14	NA	NA
BBD76294.1|28010_29552_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.2	2.0e-26
BBD76295.1|29604_30591_+	transcriptional regulator, LysR family	NA	NA	NA	NA	NA
BBD76296.1|30641_31451_+	hypothetical protein	NA	A4JWQ6	Burkholderia_virus	48.8	1.4e-55
BBD76297.1|31618_32092_+	ferritin, Dps family protein	NA	W5S6G8	Pithovirus	34.0	6.7e-13
BBD76298.1|32151_32586_+	hypothetical protein	NA	NA	NA	NA	NA
BBD76299.1|32538_35052_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	29.8	1.4e-45
BBD76300.1|35093_36239_-	DNA protecting protein DprA	NA	S6BFL3	Thermus_phage	34.6	2.3e-22
BBD76301.1|36235_37390_-	hypothetical protein	NA	A0A0M4R3I1	Arthrobacter_phage	53.3	3.9e-06
BBD76302.1|37431_37935_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.4	2.4e-16
BBD76303.1|37931_38924_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.3	3.6e-08
BBD76304.1|38913_39774_+	heat shock protein HtpX	NA	NA	NA	NA	NA
BBD76305.1|39804_40227_-	hypothetical protein	NA	NA	NA	NA	NA
BBD76306.1|40230_41928_-	hypothetical protein	NA	NA	NA	NA	NA
BBD76307.1|41924_42956_-	glycosyltransferase	NA	S5FKN0	Shigella_phage	44.2	5.5e-68
>prophage 2
AP018558	Hydrogenophilus thermoluteolus TH-1 DNA, complete genome	2223143	845463	853282	2223143		Escherichia_phage(33.33%)	10	NA	NA
BBD77061.1|845463_846546_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.5	4.5e-81
BBD77062.1|846542_847487_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
BBD77063.1|847504_848455_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	55.7	2.2e-92
BBD77064.1|848475_849027_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.1	1.5e-48
BBD77065.1|849037_850417_-	peptidase family protein	NA	G9BW84	Planktothrix_phage	47.6	7.9e-22
BBD77066.1|850518_850722_+	cold shock-like protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	78.8	8.9e-23
BBD77067.1|850824_850992_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
BBD77068.1|851005_851242_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
BBD77069.1|851308_851992_-	DNA repair protein radC	NA	NA	NA	NA	NA
BBD77070.1|852016_853282_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase	NA	Q9HH70	Methanothermobacter_phage	31.8	3.6e-37
>prophage 3
AP018558	Hydrogenophilus thermoluteolus TH-1 DNA, complete genome	2223143	1021531	1049107	2223143	tail,plate	Burkholderia_phage(18.52%)	39	NA	NA
BBD77220.1|1021531_1021888_+	hypothetical protein	NA	R9U0S8	Rhizobium_phage	33.6	2.0e-06
BBD77221.1|1021946_1022435_+	phage lysozyme	NA	A0A068CDE9	Acinetobacter_phage	43.0	4.8e-22
BBD77222.1|1022449_1023358_-	hypothetical protein	NA	Q8LTB7	Lactobacillus_phage	28.5	2.0e-26
BBD77223.1|1023387_1023939_+	hypothetical protein	NA	NA	NA	NA	NA
BBD77224.1|1023928_1024378_+	hypothetical protein	NA	NA	NA	NA	NA
BBD77225.1|1024367_1024691_+	hypothetical protein	NA	NA	NA	NA	NA
BBD77226.1|1024694_1024838_+	hypothetical protein	NA	NA	NA	NA	NA
BBD77227.1|1024837_1025368_+	hypothetical protein	NA	Q6QIC2	Burkholderia_phage	40.5	1.2e-23
BBD77228.1|1025360_1026734_+	hypothetical protein	NA	A0A1B1P714	Rhodovulum_phage	46.5	8.0e-99
BBD77229.1|1026727_1028329_+	hypothetical protein	NA	A0A2P9JZI9	Alteromonadaceae_phage	40.2	3.2e-91
BBD77230.1|1028328_1028520_+	hypothetical protein	NA	NA	NA	NA	NA
BBD77231.1|1028503_1029841_+	virion morphogenesis protein	NA	M4SNU0	Rhodobacter_phage	59.7	8.9e-79
BBD77232.1|1030158_1030644_+	virion morphogenesis protein	NA	F8TVC6	EBPR_siphovirus	36.5	1.8e-13
BBD77233.1|1030877_1031858_+	Mu-like prophage I protein	NA	A0A1B0T6J6	Pelagibaca_phage	33.1	7.6e-35
BBD77234.1|1031863_1032772_+	hypothetical protein	NA	A0SMP3	Pseudomonas_virus	66.0	3.8e-113
BBD77235.1|1032775_1032985_+	hypothetical protein	NA	NA	NA	NA	NA
BBD77236.1|1032988_1033426_+	hypothetical protein	NA	A0A2P9JZJ4	Alteromonadaceae_phage	42.3	1.3e-18
BBD77237.1|1033425_1033878_+	hypothetical protein	NA	NA	NA	NA	NA
BBD77238.1|1033879_1034071_+	hypothetical protein	NA	NA	NA	NA	NA
BBD77239.1|1034074_1035310_+|tail	phage tail sheath protein	tail	A4JWK5	Burkholderia_virus	49.6	1.4e-126
BBD77240.1|1035320_1035842_+|tail	phage tail tube protein	tail	A4JWK6	Burkholderia_virus	52.9	3.9e-46
BBD77241.1|1035845_1036094_+	hypothetical protein	NA	Q6QIA8	Burkholderia_phage	54.4	6.0e-13
BBD77242.1|1036207_1036375_-	hypothetical protein	NA	NA	NA	NA	NA
BBD77243.1|1036376_1039472_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	33.2	9.3e-87
BBD77244.1|1039468_1040404_+	phage P2 GpU family protein	NA	Q6QIA4	Burkholderia_phage	38.0	2.4e-22
BBD77245.1|1040391_1040607_+|tail	phage tail protein	tail	R9U1D8	Rhizobium_phage	42.0	7.2e-07
BBD77246.1|1040599_1041634_+	bacteriophage regulatory protein	NA	A0A0C5AJ59	Bacteriophage	26.1	4.5e-22
BBD77247.1|1041623_1042052_+|plate	phage baseplate component	plate	Q6QIA1	Burkholderia_phage	45.2	6.5e-23
BBD77248.1|1042060_1042351_+	PAAR repeat-containing protein	NA	K4ICQ1	Acidithiobacillus_phage	50.0	7.0e-21
BBD77249.1|1042398_1042761_+|plate	baseplate protein	plate	A4JWL5	Burkholderia_virus	52.5	4.9e-24
BBD77250.1|1042757_1043570_+|plate	bacteriophage baseplate assembly protein	plate	Q6QI99	Burkholderia_phage	38.1	2.6e-49
BBD77251.1|1043562_1044597_+|tail	phage tail protein	tail	NA	NA	NA	NA
BBD77252.1|1044593_1045031_+	hypothetical protein	NA	A0A291L9V2	Bordetella_phage	59.6	4.9e-34
BBD77253.1|1045043_1045985_+	hypothetical protein	NA	R9TNJ7	Vibrio_phage	56.0	2.2e-07
BBD77254.1|1046002_1046332_+	hypothetical protein	NA	NA	NA	NA	NA
BBD77255.1|1046360_1047470_+	hypothetical protein	NA	D4HTV7	Vibrio_phage	40.9	4.5e-68
BBD77256.1|1047736_1047883_+	hypothetical protein	NA	NA	NA	NA	NA
BBD77257.1|1047879_1048071_+	hypothetical protein	NA	D4HTV9	Vibrio_phage	74.3	9.2e-06
BBD77258.1|1048063_1049107_+	phage-encoded reverse transcriptase	NA	A0A1I9KFG3	Aeromonas_phage	41.3	8.3e-64
>prophage 4
AP018558	Hydrogenophilus thermoluteolus TH-1 DNA, complete genome	2223143	1366459	1373878	2223143		Indivirus(33.33%)	10	NA	NA
BBD77548.1|1366459_1367569_+	riboflavin biosynthesis protein RibD	NA	A0A1V0SE20	Indivirus	33.4	1.5e-39
BBD77549.1|1367534_1367948_+	cobalamin biosynthesis protein CbiX	NA	NA	NA	NA	NA
BBD77550.1|1367983_1368805_-	molybdopterin biosynthesis protein MoeB	NA	A0A1V0SCZ9	Indivirus	29.9	3.4e-12
BBD77551.1|1368761_1369208_-	hypothetical protein	NA	NA	NA	NA	NA
BBD77552.1|1369251_1370709_-	peptidase S41	NA	A0A0R6PIZ1	Moraxella_phage	26.9	7.8e-20
BBD77553.1|1370718_1371963_-	peptidase M23	NA	Q8SBN9	Clostridium_phage	37.9	3.9e-12
BBD77554.1|1371971_1372718_-	phosphoglycerate mutase	NA	NA	NA	NA	NA
BBD77555.1|1372834_1373149_+	transcriptional regulator	NA	NA	NA	NA	NA
BBD77556.1|1373177_1373615_+	rhodanese	NA	A0A2N9QVZ6	Dishui_lake_phycodnavirus	31.0	1.1e-09
BBD77557.1|1373611_1373878_+	glutaredoxin	NA	V9QKN6	Rhizobium_phage	42.1	1.7e-10
>prophage 5
AP018558	Hydrogenophilus thermoluteolus TH-1 DNA, complete genome	2223143	1924666	1931275	2223143	tRNA	uncultured_Mediterranean_phage(33.33%)	8	NA	NA
BBD78073.1|1924666_1925599_-	deacetylase	NA	A0A2K9L2T7	Tupanvirus	31.1	7.2e-35
BBD78074.1|1925648_1926680_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	34.3	7.2e-28
BBD78075.1|1926714_1927638_-	peptidase	NA	Q8SBN9	Clostridium_phage	38.5	1.7e-15
BBD78076.1|1927648_1928332_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.5	1.5e-29
BBD78077.1|1928343_1929081_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.1	1.3e-71
BBD78078.1|1929135_1929882_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
BBD78079.1|1929851_1930808_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
BBD78080.1|1930813_1931275_-	single-stranded DNA-binding protein	NA	A0A291LCB6	Klebsiella_phage	70.5	2.2e-40
>prophage 6
AP018558	Hydrogenophilus thermoluteolus TH-1 DNA, complete genome	2223143	2079597	2120311	2223143	transposase,integrase,tRNA	Enterobacteria_phage(30.0%)	36	2100692:2100709	2126451:2126468
BBD78218.1|2079597_2080581_+|transposase	transposase	transposase	E5E3P6	Burkholderia_phage	61.3	5.9e-112
BBD78219.1|2080700_2082047_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
BBD78220.1|2082057_2082474_-	hypothetical protein	NA	NA	NA	NA	NA
BBD78221.1|2082486_2083212_-	Rossman fold protein, TIGR00730 family	NA	A0A1D8KU27	Synechococcus_phage	34.8	9.6e-19
BBD78222.1|2083288_2086207_+	DNA polymerase I	NA	A0A142KBX8	Gordonia_phage	31.0	1.4e-55
BBD78223.1|2086203_2088237_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	41.6	5.4e-27
BBD78224.1|2088371_2089019_+	hypothetical protein	NA	NA	NA	NA	NA
BBD78225.1|2089032_2090127_+	hypothetical protein	NA	NA	NA	NA	NA
BBD78226.1|2090198_2091536_-	23S rRNA (uracil(1939)-C(5))-methyltransferase	NA	NA	NA	NA	NA
BBD78227.1|2091535_2092798_-	hypothetical protein	NA	NA	NA	NA	NA
BBD78228.1|2092821_2093712_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
BBD78229.1|2093754_2094936_-	cardiolipin synthase B	NA	NA	NA	NA	NA
BBD78230.1|2094946_2095693_-	EEP domain-containing protein	NA	NA	NA	NA	NA
BBD78231.1|2095707_2096859_-	quinolinate synthetase	NA	NA	NA	NA	NA
BBD78232.1|2096876_2097329_-	rhodanese	NA	NA	NA	NA	NA
BBD78233.1|2097343_2098615_+	cation transporter	NA	NA	NA	NA	NA
BBD78234.1|2098754_2100164_+	glutamine synthetase	NA	NA	NA	NA	NA
BBD78235.1|2100235_2100622_+	DUF4124 domain-containing protein	NA	NA	NA	NA	NA
BBD78236.1|2100626_2101676_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	27.2	1.2e-06
2100692:2100709	attL	CTTCGTCAACGCCGCCGC	NA	NA	NA	NA
BBD78237.1|2101672_2103316_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
BBD78238.1|2103363_2103633_+	hypothetical protein	NA	NA	NA	NA	NA
BBD78239.1|2103625_2103883_+	hypothetical protein	NA	NA	NA	NA	NA
BBD78240.1|2103932_2104367_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
BBD78241.1|2104451_2106218_+|tRNA	cysteine--tRNA ligase	tRNA	A0A0U2SJ70	Niemeyer_virus	34.0	5.7e-41
BBD78242.1|2106671_2107352_+	hypothetical protein	NA	NA	NA	NA	NA
BBD78243.1|2107351_2110861_+	hypothetical protein	NA	NA	NA	NA	NA
BBD78244.1|2111174_2113229_+	sugar transporter	NA	NA	NA	NA	NA
BBD78245.1|2113242_2114406_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
BBD78246.1|2114409_2115513_-	glycosyltransferase	NA	NA	NA	NA	NA
BBD78247.1|2115528_2116068_-	glycosyltransferase	NA	NA	NA	NA	NA
BBD78248.1|2116209_2117193_-|transposase	transposase	transposase	E5E3P6	Burkholderia_phage	61.3	3.4e-112
BBD78249.1|2117625_2118327_+|transposase	transposase	transposase	U5N3F9	Enterobacteria_phage	58.6	2.8e-68
BBD78250.1|2118349_2118769_+|transposase	transposase	transposase	U5N3F9	Enterobacteria_phage	50.0	2.9e-28
BBD78251.1|2118874_2119405_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	78.2	8.2e-68
BBD78252.1|2119413_2119689_-|integrase	integrase, partial	integrase	NA	NA	NA	NA
BBD78253.1|2119789_2120311_-|transposase	transposase, partial	transposase	NA	NA	NA	NA
2126451:2126468	attR	GCGGCGGCGTTGACGAAG	NA	NA	NA	NA
>prophage 1
AP018559	Hydrogenophilus thermoluteolus TH-1 plasmid pTH1 DNA, complete genome	65637	1784	34335	65637	integrase,transposase	Burkholderia_phage(25.0%)	39	3502:3516	23567:23581
BBD78350.1|1784_2951_+|transposase	transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	40.0	1.8e-67
3502:3516	attL	TTTTTATAATTTGCT	NA	NA	NA	NA
BBD78351.1|3610_3850_+	hypothetical protein	NA	NA	NA	NA	NA
BBD78352.1|3979_4306_-	growth inhibitor PemK	NA	A0A2K9V2U7	Faecalibacterium_phage	35.5	7.6e-08
BBD78353.1|4292_4523_-	addiction module antitoxin	NA	NA	NA	NA	NA
BBD78354.1|4596_6261_-	mobilization protein A	NA	M1Q738	Cellulophaga_phage	36.0	4.7e-37
BBD78355.1|6250_6634_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
BBD78356.1|7518_7662_+|transposase	transposase	transposase	U5N3V8	Enterobacteria_phage	88.9	2.7e-10
BBD78357.1|7669_7921_-|transposase	transposase	transposase	NA	NA	NA	NA
BBD78358.1|8027_8354_-	MazF/PemK family toxin	NA	NA	NA	NA	NA
BBD78359.1|8350_8572_-	hypothetical protein	NA	NA	NA	NA	NA
BBD78360.1|8728_10003_-|transposase	transposase	transposase	A0A7P9	Microcystis_virus	40.0	8.3e-66
BBD78361.1|9996_10626_-	resolvase	NA	A0A1S5RFV4	Helicobacter_phage	62.8	1.4e-63
BBD78362.1|10828_11242_+	hypothetical protein	NA	NA	NA	NA	NA
BBD78363.1|11195_11516_+	transcriptional regulator	NA	NA	NA	NA	NA
BBD78364.1|11628_12159_-	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA	NA
BBD78365.1|12811_13048_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
BBD78366.1|13044_13476_+	PIN domain-containing protein	NA	NA	NA	NA	NA
BBD78367.1|13685_14111_+	toxin-antitoxin system toxin component PIN family	NA	NA	NA	NA	NA
BBD78368.1|14120_14372_+	hypothetical protein	NA	NA	NA	NA	NA
BBD78369.1|14375_14981_+|integrase	integrase	integrase	A0A2L1IV36	Escherichia_phage	42.6	6.3e-32
BBD78370.1|15027_15720_-	hypothetical protein	NA	NA	NA	NA	NA
BBD78371.1|15878_16328_-	hypothetical protein	NA	NA	NA	NA	NA
BBD78372.1|16482_16689_+	hypothetical protein	NA	NA	NA	NA	NA
BBD78373.1|16694_17822_-|transposase	transposase	transposase	NA	NA	NA	NA
BBD78374.1|18186_20478_-	hypothetical protein	NA	NA	NA	NA	NA
BBD78375.1|20725_20962_+	prevent-host-death family protein	NA	NA	NA	NA	NA
BBD78376.1|20965_21418_+	PIN domain nuclease	NA	NA	NA	NA	NA
BBD78377.1|21526_21787_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
BBD78378.1|21804_22461_-	chromosome partitioning protein ParA	NA	E5FFJ3	Burkholderia_phage	56.3	2.8e-57
BBD78379.1|22526_23021_-	RES domain-containing protein	NA	NA	NA	NA	NA
BBD78380.1|23020_23473_-	antitoxin	NA	NA	NA	NA	NA
BBD78381.1|23616_23883_-	cryptic plasmid protein A	NA	NA	NA	NA	NA
23567:23581	attR	AGCAAATTATAAAAA	NA	NA	NA	NA
BBD78382.1|24261_25635_-|transposase	transposase	transposase	NA	NA	NA	NA
BBD78383.1|25792_26776_+|transposase	transposase	transposase	E5E3P6	Burkholderia_phage	61.0	1.3e-111
BBD78384.1|27027_27576_-|transposase	transposase	transposase	NA	NA	NA	NA
BBD78385.1|27640_29530_+	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	38.3	1.2e-116
BBD78386.1|29532_32208_+	DEAD/DEAH box helicase	NA	A0A2K5B256	Erysipelothrix_phage	37.1	1.4e-155
BBD78387.1|32595_33387_-|transposase	transposase	transposase	NA	NA	NA	NA
BBD78388.1|33876_34335_+|transposase	transposase	transposase	E5E3P6	Burkholderia_phage	58.4	7.1e-36
