assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003574925.1_ASM357492v1	CP032308	Enterococcus faecium strain HY07 chromosome, complete genome	2	428382-428473	1	CRISPRCasFinder	no	cas9,cas1,cas2,csn2	cas3,cas9,cas1,cas2,csn2,DEDDh,csa3,DinG,cas14j	Type II-C,Type II-B,Type II-A	GGTTTTAGAGCTATGCTGATTTGAAT	26	0	0	NA	NA	II-A	1	1	TypeII-C,TypeII-B,TypeII-A	cas3,cas9,cas1,cas2,csn2,DEDDh,csa3,DinG,cas14j	NA|287aa|up_8|CP032308.1_418858_419719_+,NA|64aa|up_7|CP032308.1_419743_419935_-,NA|43aa|up_5|CP032308.1_421758_421887_-,NA|66aa|up_4|CP032308.1_422203_422401_+,NA	NA|378aa|up_9|CP032308.1_417435_418569_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|287aa|up_8|CP032308.1_418858_419719_+	NA	NA|64aa|up_7|CP032308.1_419743_419935_-	NA	NA|565aa|up_6|CP032308.1_420007_421702_-	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|43aa|up_5|CP032308.1_421758_421887_-	NA	NA|66aa|up_4|CP032308.1_422203_422401_+	NA	cas9|1341aa|up_3|CP032308.1_422409_426432_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|CP032308.1_426432_427299_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|110aa|up_1|CP032308.1_427310_427640_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|CP032308.1_427629_428292_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|122aa|down_0|CP032308.1_428654_429020_+	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|122aa|down_1|CP032308.1_429016_429382_+	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|476aa|down_2|CP032308.1_429542_430970_-	pfam08280, HTH_Mga, M protein trans-acting positive regulator (MGA) HTH domain	NA|851aa|down_3|CP032308.1_431675_434228_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|480aa|down_4|CP032308.1_434234_435674_-	pfam18333, ssDNA_DBD, Non-canonical single-stranded DNA-binding domain	NA|121aa|down_5|CP032308.1_435817_436180_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|286aa|down_6|CP032308.1_436366_437224_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|304aa|down_7|CP032308.1_437343_438255_+	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit	NA|549aa|down_8|CP032308.1_438261_439908_+	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter	NA|100aa|down_9|CP032308.1_440009_440309_+	TIGR03130, malonate_delta, malonate decarboxylase acyl carrier protein
GCA_003574925.1_ASM357492v1	CP032308	Enterococcus faecium strain HY07 chromosome, complete genome	4	2293637-2293772	3	CRISPRCasFinder	no		cas3,cas9,cas1,cas2,csn2,DEDDh,csa3,DinG,cas14j	Orphan	CTTTGCTCAACCAGTATTGTTCATCATCTATTCTCTTCGTTCATAGTGATTC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,cas1,cas2,csn2,DEDDh,csa3,DinG,cas14j	NA,NA	NA|596aa|up_9|CP032308.1_2280908_2282696_+	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35	NA|579aa|up_8|CP032308.1_2283641_2285378_-	pfam10022, DUF2264, Uncharacterized protein conserved in bacteria (DUF2264)	NA|380aa|up_7|CP032308.1_2285758_2286898_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|CP032308.1_2287076_2287790_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|CP032308.1_2288048_2288750_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|CP032308.1_2288983_2290516_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|397aa|up_3|CP032308.1_2290571_2291762_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|CP032308.1_2291843_2292533_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|CP032308.1_2292639_2293008_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|CP032308.1_2293060_2293564_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|CP032308.1_2293973_2294663_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|CP032308.1_2294766_2295189_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|CP032308.1_2295531_2296200_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|CP032308.1_2296212_2297085_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|367aa|down_4|CP032308.1_2297178_2298279_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|294aa|down_5|CP032308.1_2298370_2299252_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|CP032308.1_2299328_2299874_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|CP032308.1_2299974_2300145_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|CP032308.1_2300165_2300318_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|CP032308.1_2300479_2301124_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
