The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	21062	52057	4288892	transposase	Paenibacillus_phage(25.0%)	28	NA	NA
AYA39110.1|21062_21824_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.0	1.4e-12
AYA39111.1|21973_22474_+	reverse transcriptase	NA	NA	NA	NA	NA
AYA39112.1|23020_23905_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA39113.1|23946_24834_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA39114.1|25127_25391_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
AYA39115.1|25393_26125_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39116.1|26147_26789_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39117.1|26971_27670_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39118.1|27666_28359_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39119.1|28360_28705_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39120.1|28704_29199_-	DUF4123 domain-containing protein	NA	A4PE24	Ralstonia_virus	39.3	2.1e-17
AYA39121.1|29195_31178_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
AYA39122.1|31387_31903_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39123.1|31937_32948_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39124.1|35325_35529_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39125.1|36980_37106_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39126.1|37370_38411_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA42384.1|39714_39789_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39127.1|39880_40516_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39128.1|40807_41044_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39129.1|42586_42982_-	VOC family protein	NA	NA	NA	NA	NA
AYA39130.1|43125_43725_-	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	39.4	3.2e-28
AYA39131.1|46293_46848_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39132.1|46966_48064_+|transposase	ISAs1-like element ISXne3 family transposase	transposase	NA	NA	NA	NA
AYA39133.1|48036_49410_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39134.1|49697_50021_+|transposase	transposase	transposase	A0A218MNC9	uncultured_virus	40.6	1.4e-09
AYA39135.1|50091_50529_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA39136.1|51157_52057_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	78748	125956	4288892	transposase,plate	Enterobacteria_phage(25.0%)	35	NA	NA
AYA39155.1|78748_80506_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AYA39156.1|80819_81218_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA	NA
AYA39157.1|82193_83633_+	integrating conjugative element protein	NA	NA	NA	NA	NA
AYA39158.1|83636_83981_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39159.1|83977_85492_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
AYA39160.1|86815_87253_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA39161.1|87323_87647_-|transposase	transposase	transposase	A0A218MNC9	uncultured_virus	39.6	2.6e-08
AYA39162.1|87696_88461_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42386.1|88521_89295_+	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
AYA39163.1|89298_91044_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AYA39164.1|91057_92248_+	Bcr/CflA family efflux MFS transporter	NA	NA	NA	NA	NA
AYA39165.1|92299_93088_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYA39166.1|94162_95077_+	DNA-binding protein	NA	NA	NA	NA	NA
AYA39167.1|95239_100270_+	nuclease	NA	NA	NA	NA	NA
AYA39168.1|100266_101790_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39169.1|102090_103131_+|transposase	IS481 family transposase	transposase	A0A077SLK2	Escherichia_phage	80.9	6.8e-167
AYA39170.1|106891_107746_-	nucleoside transporter	NA	NA	NA	NA	NA
AYA39171.1|109937_110810_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	24.1	1.5e-05
AYA39172.1|111139_111565_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
AYA39173.1|111564_111819_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AYA39174.1|112043_112373_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
AYA39175.1|112513_112852_+	type I addiction module toxin, SymE family	NA	NA	NA	NA	NA
AYA39176.1|112954_113242_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	56.8	1.3e-22
AYA39177.1|113252_113537_+	putative addiction module antidote protein	NA	NA	NA	NA	NA
AYA39178.1|113619_114003_-|transposase	transposase	transposase	NA	NA	NA	NA
AYA42387.1|114123_114333_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39179.1|114455_115487_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA42388.1|115568_115766_+	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
AYA39180.1|115815_116430_-	DUF4158 domain-containing protein	NA	NA	NA	NA	NA
AYA42389.1|116637_117243_+	recombinase family protein	NA	A0A219YB42	Aeromonas_phage	43.5	1.9e-28
AYA39181.1|117318_117573_+	RepB family plasmid replication initiator protein	NA	E5FFJ0	Burkholderia_phage	46.2	3.4e-11
AYA39182.1|117655_118540_-	taurine catabolism dioxygenase TauD	NA	NA	NA	NA	NA
AYA39183.1|121448_123884_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	43.4	5.4e-175
AYA39184.1|123993_124200_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	47.4	7.4e-09
AYA39185.1|125125_125956_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	175186	201601	4288892	transposase	uncultured_virus(14.29%)	24	NA	NA
AYA39225.1|175186_176395_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	47.9	2.5e-48
AYA39226.1|176413_176653_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39227.1|176741_176954_-	AlpA family transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	48.1	9.3e-07
AYA39228.1|177179_178394_-	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	56.7	5.9e-130
AYA39229.1|178826_179702_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	36.5	2.8e-33
AYA39230.1|179701_179914_+	ribosome-associated protein YbcJ	NA	NA	NA	NA	NA
AYA39231.1|180198_181815_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
AYA39232.1|181843_182380_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA42392.1|182373_182811_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA39233.1|183299_184346_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
AYA39234.1|184801_185473_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39235.1|185494_185851_+	DUF4810 domain-containing protein	NA	NA	NA	NA	NA
AYA39236.1|185850_186510_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39237.1|186578_187919_-	MATE family efflux transporter	NA	NA	NA	NA	NA
AYA39238.1|189172_190123_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	31.3	1.2e-40
AYA39239.1|190264_190855_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA39240.1|190914_191676_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.0	1.8e-12
AYA39241.1|191674_191866_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39242.1|192000_192918_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39243.1|195498_196575_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
AYA39244.1|196664_197831_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYA39245.1|197932_198952_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYA39246.1|199238_201233_-	transketolase	NA	NA	NA	NA	NA
AYA42393.1|201388_201601_-|transposase	transposase	transposase	A0A077SL42	Escherichia_phage	75.0	3.4e-09
>prophage 4
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	236201	283768	4288892	transposase,integrase,tRNA	Escherichia_phage(33.33%)	40	234586:234600	289896:289910
234586:234600	attL	TCGCGCCAACAATTT	NA	NA	NA	NA
AYA42397.1|236201_236921_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
AYA39280.1|237164_238205_+	adenine DNA glycosylase	NA	NA	NA	NA	NA
AYA39281.1|238243_238516_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AYA39282.1|238601_239675_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA	NA
AYA39283.1|240278_241286_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AYA39284.1|241499_242390_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39285.1|242621_243308_-	SAM-dependent DNA methyltransferase	NA	A0A2I7RHV5	Vibrio_phage	31.0	1.1e-19
AYA39286.1|243419_244343_-	DUF1281 domain-containing protein	NA	NA	NA	NA	NA
AYA39287.1|244447_244741_-	toxin-antitoxin protein	NA	NA	NA	NA	NA
AYA39288.1|244754_245288_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39289.1|245418_245862_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39290.1|245883_246771_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA39291.1|247383_248424_-|transposase	IS481 family transposase	transposase	A0A077SLK2	Escherichia_phage	80.9	6.8e-167
AYA39292.1|248559_248952_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39293.1|249155_250589_+|transposase	IS1182 family transposase	transposase	NA	NA	NA	NA
AYA39294.1|251189_251516_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39295.1|251634_252372_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39296.1|252984_254016_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA42398.1|254210_255758_+	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	28.0	4.7e-47
AYA39297.1|255754_256951_+	restriction endonuclease subunit S	NA	A0A1V0S9X7	Catovirus	30.3	1.2e-10
AYA39298.1|257008_260248_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	29.1	6.5e-59
AYA39299.1|260405_261446_+|transposase	IS481 family transposase	transposase	A0A077SLK2	Escherichia_phage	80.9	6.8e-167
AYA39300.1|262757_263147_+	glyoxalase	NA	NA	NA	NA	NA
AYA39301.1|263707_264184_+	phenazine biosynthesis protein	NA	NA	NA	NA	NA
AYA39302.1|264310_264940_+	isochorismatase family protein	NA	NA	NA	NA	NA
AYA39303.1|264932_266840_+	phenazine-specific anthranilate synthase component I	NA	NA	NA	NA	NA
AYA39304.1|266832_267684_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AYA39305.1|267728_268358_+	phenazine biosynthesis protein	NA	NA	NA	NA	NA
AYA39306.1|268281_269436_+	phenazine antibiotic biosynthesis protein	NA	NA	NA	NA	NA
AYA39307.1|269435_270833_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AYA39308.1|270898_271588_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AYA39309.1|271613_273047_+	MFS transporter	NA	NA	NA	NA	NA
AYA39310.1|273064_273856_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AYA42399.1|273860_275009_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39311.1|275040_276588_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39312.1|276577_276817_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39313.1|276819_277845_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39314.1|278189_278690_+	DUF2165 family protein	NA	NA	NA	NA	NA
AYA39315.1|281656_282550_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39316.1|282760_283768_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
289896:289910	attR	AAATTGTTGGCGCGA	NA	NA	NA	NA
>prophage 5
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	304745	349638	4288892	transposase,integrase,plate	Escherichia_phage(15.38%)	39	314059:314073	351535:351549
AYA39338.1|304745_305423_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	52.9	6.6e-54
AYA39339.1|305435_306320_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA39340.1|306495_307506_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA39341.1|308899_309040_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39342.1|309418_310318_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA39343.1|310757_311516_-	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA	NA
AYA39344.1|311525_313589_-	conjugative coupling factor TraD, PFGI-1 class	NA	NA	NA	NA	NA
AYA39345.1|313585_314125_-	integrating conjugative element protein	NA	NA	NA	NA	NA
314059:314073	attL	CACTTATCCATAACA	NA	NA	NA	NA
AYA39346.1|314103_314802_-	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA	NA
AYA39347.1|314798_315332_-	pilus assembly protein PilL	NA	NA	NA	NA	NA
AYA39348.1|315474_315762_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	63.5	3.9e-16
AYA39349.1|316050_316488_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA39350.1|316558_316882_-|transposase	transposase	transposase	A0A218MNC9	uncultured_virus	39.6	2.6e-08
AYA39351.1|317244_318006_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.0	1.4e-12
AYA39352.1|318357_318546_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39353.1|318535_320161_+	SAM-dependent methyltransferase	NA	A0A2I6UHU5	Bacillus_phage	26.6	1.4e-12
AYA39354.1|320268_321309_-|transposase	IS481 family transposase	transposase	A0A077SLK2	Escherichia_phage	80.9	6.8e-167
AYA39355.1|321422_324416_-	adenine methyltransferase	NA	A0A1V0SG34	Hokovirus	23.6	1.2e-06
AYA39356.1|325549_326578_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA39357.1|327324_327837_-	single-stranded DNA-binding protein	NA	A0A291LCB6	Klebsiella_phage	75.2	3.4e-47
AYA39358.1|327851_328061_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39359.1|328138_328603_-	DUF3577 domain-containing protein	NA	NA	NA	NA	NA
AYA39360.1|329008_331012_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	28.2	4.1e-35
AYA39361.1|331013_331739_-	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA	NA
AYA42400.1|331665_331896_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39362.1|332409_333633_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA39363.1|333722_333980_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39364.1|334000_334582_-	DUF2857 domain-containing protein	NA	NA	NA	NA	NA
AYA39365.1|334662_336246_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39366.1|336245_336851_-	hypothetical protein	NA	O80281	Escherichia_phage	70.2	2.7e-27
AYA39367.1|337057_337519_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39368.1|337674_339033_-	hypothetical protein	NA	A0A0B5A729	Achromobacter_phage	30.2	1.7e-08
AYA39369.1|339070_339853_-	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
AYA39370.1|339849_341877_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
AYA39371.1|341910_343662_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AYA42401.1|345083_345350_+	transcriptional regulator	NA	A0A0M4UV99	Ralstonia_phage	50.0	7.1e-12
AYA39372.1|345988_346996_-|integrase	site-specific integrase	integrase	A0A2I6UGM5	Salinibacter_virus	22.8	5.3e-07
AYA42402.1|347206_348100_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39373.1|348750_349638_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
351535:351549	attR	TGTTATGGATAAGTG	NA	NA	NA	NA
>prophage 6
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	352990	415956	4288892	transposase	Stx2-converting_phage(20.0%)	43	NA	NA
AYA39378.1|352990_354562_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.8	3.8e-169
AYA39379.1|354581_354929_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	71.4	8.6e-42
AYA39380.1|354928_355561_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	43.4	6.0e-17
AYA39381.1|355552_355687_+	copper resistance protein	NA	NA	NA	NA	NA
AYA39382.1|355780_356791_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA39383.1|368849_369683_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AYA39384.1|369936_371448_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AYA39385.1|371456_373421_+	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	E5ERI2	Ostreococcus_lucimarinus_virus	23.4	1.2e-20
AYA39386.1|373706_374699_+	inositol 2-dehydrogenase	NA	NA	NA	NA	NA
AYA39387.1|374860_376534_+	solute:sodium symporter family transporter	NA	A0A219Y9P9	Aeromonas_phage	26.8	4.4e-35
AYA39388.1|376545_378453_+	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA	NA
AYA39389.1|378559_379450_+	myo-inosose-2 dehydratase	NA	NA	NA	NA	NA
AYA39390.1|379472_380303_+	5-deoxy-glucuronate isomerase	NA	NA	NA	NA	NA
AYA39391.1|380375_381662_-	cytosine permease	NA	NA	NA	NA	NA
AYA39392.1|381678_382374_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AYA39393.1|382786_383401_+	XRE family transcriptional regulator	NA	A0A2H4J122	uncultured_Caudovirales_phage	47.0	5.2e-42
AYA39394.1|383384_384230_+	VUT family protein	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	49.8	6.5e-75
AYA39395.1|388563_389058_+	TIGR00645 family protein	NA	NA	NA	NA	NA
AYA39396.1|389125_389611_-	tellurium resistance protein TerW	NA	NA	NA	NA	NA
AYA42403.1|389771_390710_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
AYA39397.1|390709_391789_-	hypothetical protein	NA	A0A172Q0S8	Acinetobacter_phage	34.7	4.4e-36
AYA39398.1|391837_392992_-	adenine/guanine phosphoribosyltransferase	NA	A0A172Q0Y1	Acinetobacter_phage	35.1	7.1e-32
AYA39399.1|393415_394003_+	tellurium resistance protein TerZ	NA	K4JRX3	Caulobacter_phage	28.5	6.4e-13
AYA39400.1|394002_395175_+	tellurium resistance protein TerA	NA	NA	NA	NA	NA
AYA39401.1|395205_395661_+	Tellurium resistance protein TerB	NA	NA	NA	NA	NA
AYA39402.1|395691_396720_+	TerC/Alx family metal homeostasis membrane protein	NA	A0A1D7XFL1	Escherichia_phage	46.8	1.1e-73
AYA39403.1|396824_397403_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	38.0	7.9e-32
AYA39404.1|397903_399064_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AYA39405.1|402144_402720_+	recombinase family protein	NA	A0JC18	Ralstonia_phage	38.6	4.9e-26
AYA39406.1|402716_402989_+	arylsulfatase regulator	NA	NA	NA	NA	NA
AYA42404.1|403381_403567_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42405.1|404373_404568_-|transposase	transposase	transposase	NA	NA	NA	NA
AYA39407.1|406596_407034_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA39408.1|407104_407428_-|transposase	transposase	transposase	A0A218MNC9	uncultured_virus	39.6	2.6e-08
AYA39409.1|408053_408206_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AYA39410.1|408221_409253_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA39411.1|409348_409954_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39412.1|410535_410790_-	hypothetical protein	NA	NA	NA	NA	NA
AYA42406.1|410876_411992_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AYA42407.1|412130_413048_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	49.7	1.6e-50
AYA39413.1|413690_413975_+	DUF4158 domain-containing protein	NA	NA	NA	NA	NA
AYA39414.1|414677_414887_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39415.1|414915_415956_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	485300	607964	4288892	tail,transposase,holin,tRNA	Salmonella_phage(24.0%)	104	NA	NA
AYA39473.1|485300_486479_+|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	tRNA	NA	NA	NA	NA
AYA39474.1|486550_486973_+	fimbrial assembly protein	NA	NA	NA	NA	NA
AYA39475.1|487089_488115_+	cytoskeleton protein RodZ	NA	NA	NA	NA	NA
AYA39476.1|488271_489393_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
AYA39477.1|489373_489556_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39478.1|489549_490830_+|tRNA	histidine--tRNA ligase	tRNA	A0A1V0SFH3	Hokovirus	24.5	9.3e-17
AYA39479.1|490843_491464_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39480.1|491479_492652_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AYA39481.1|492958_494449_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AYA39482.1|494811_495030_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39483.1|495321_496371_-	peptidase M4 family protein	NA	NA	NA	NA	NA
AYA39484.1|496603_497656_-	peptidase M4 family protein	NA	NA	NA	NA	NA
AYA39485.1|497902_498811_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
AYA39486.1|499074_500031_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA39487.1|500480_501017_+	gluconokinase	NA	NA	NA	NA	NA
AYA39488.1|501016_502354_+	gluconate transporter	NA	NA	NA	NA	NA
AYA39489.1|502444_502729_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYA39490.1|502718_502970_-	plasmid stabilization protein	NA	NA	NA	NA	NA
AYA39491.1|503746_504733_-	DUF459 domain-containing protein	NA	NA	NA	NA	NA
AYA39492.1|505659_506559_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA39493.1|507348_508125_-	protein bax	NA	NA	NA	NA	NA
AYA39494.1|508501_508732_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39495.1|508786_509110_-	DUF3761 domain-containing protein	NA	NA	NA	NA	NA
AYA39496.1|509668_510133_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYA39497.1|510284_510635_-	type I addiction module toxin, SymE family	NA	NA	NA	NA	NA
AYA39498.1|512441_512687_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39499.1|513320_514352_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA39500.1|514817_515123_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39501.1|515245_516256_-	conjugal transfer protein TraW	NA	NA	NA	NA	NA
AYA39502.1|516267_517308_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA39503.1|517429_517744_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39504.1|517747_518272_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39505.1|518878_519139_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39506.1|519096_520098_-	site-specific tyrosine recombinase XerC	NA	T2KT84	uncultured_phage	41.2	8.9e-07
AYA39507.1|520330_523048_-	toprim domain-containing protein	NA	A0A1S5RF71	Helicobacter_phage	23.6	7.8e-21
AYA42412.1|523178_523511_+	XRE family transcriptional regulator	NA	I6PD69	Cronobacter_phage	34.0	1.0e-07
AYA39508.1|523597_523918_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
AYA39509.1|523987_524440_-	NADAR family protein	NA	A0A0H3TLU0	Faustovirus	49.0	6.1e-32
AYA39510.1|524436_524775_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39511.1|529354_529711_-	DUF4150 domain-containing protein	NA	NA	NA	NA	NA
AYA39512.1|529703_530921_-	DUF2169 domain-containing protein	NA	NA	NA	NA	NA
AYA39513.1|530936_533051_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.9	9.3e-30
AYA39514.1|534392_535490_+|transposase	ISAs1-like element ISXne3 family transposase	transposase	NA	NA	NA	NA
AYA39515.1|535854_536754_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYA39516.1|536849_537935_-	sulfurtransferase	NA	M1TAS6	Escherichia_phage	49.7	1.8e-29
AYA39517.1|538330_539503_+|tail	phage tail sheath protein	tail	F1BUU3	Erwinia_phage	74.6	1.7e-166
AYA39518.1|539514_540033_+|tail	phage major tail tube protein	tail	F1BUU2	Erwinia_phage	65.5	3.6e-60
AYA39519.1|540242_540560_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	54.7	2.2e-20
AYA39520.1|540571_540694_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	66.7	5.7e-09
AYA39521.1|540686_543689_+|tail	phage tail protein	tail	A0A1S6L010	Salmonella_phage	43.5	2.4e-15
AYA39522.1|543685_544192_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	62.9	2.5e-42
AYA39523.1|544188_545712_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	38.6	3.1e-83
AYA39524.1|545813_546050_+	transcriptional regulator	NA	E5G6Q4	Salmonella_phage	69.4	1.8e-19
AYA39525.1|546209_546428_-	DUF465 domain-containing protein	NA	NA	NA	NA	NA
AYA39526.1|546720_547197_+	ecotin	NA	NA	NA	NA	NA
AYA39527.1|547494_548190_+	aquaporin Z	NA	NA	NA	NA	NA
AYA39528.1|548455_549217_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	41.3	4.4e-14
AYA39529.1|550070_551078_+	paerucumarin biosynthesis protein PvcA	NA	NA	NA	NA	NA
AYA39530.1|551111_552002_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AYA39531.1|552005_553292_+	glycosyltransferase	NA	NA	NA	NA	NA
AYA39532.1|553465_554095_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AYA39533.1|554204_554387_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39534.1|554490_554889_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AYA39535.1|554968_556048_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AYA39536.1|556135_557599_-	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA	NA	NA	NA	NA
AYA39537.1|557618_558794_-	2-methylcitrate synthase	NA	NA	NA	NA	NA
AYA39538.1|558786_559692_-	methylisocitrate lyase	NA	NA	NA	NA	NA
AYA42413.1|559956_561615_+	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA	NA
AYA39539.1|561645_562614_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
AYA39540.1|562729_562900_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39541.1|563015_563228_-	hypothetical protein	NA	NA	NA	NA	NA
AYA39542.1|563733_566187_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AYA39543.1|566250_566772_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
AYA39544.1|567583_568483_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA39545.1|570478_571576_-|transposase	ISAs1-like element ISXne3 family transposase	transposase	NA	NA	NA	NA
AYA39546.1|572427_572730_+	hypothetical protein	NA	NA	NA	NA	NA
AYA39547.1|572855_574538_-|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	29.4	3.8e-50
AYA39548.1|574565_576044_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
AYA39549.1|576080_576677_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
AYA39550.1|576886_578923_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	26.2	8.4e-20
AYA39551.1|579019_580276_-	MFS transporter	NA	NA	NA	NA	NA
AYA39552.1|580766_581822_+	DNA polymerase IV	NA	NA	NA	NA	NA
AYA39553.1|581917_583381_-	beta-Ala-His dipeptidase	NA	NA	NA	NA	NA
AYA39554.1|583641_584103_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
AYA39555.1|584118_585366_+	esterase FrsA	NA	NA	NA	NA	NA
AYA39556.1|585437_585839_+	Crl family RNA polymerase assembly factor	NA	NA	NA	NA	NA
AYA42414.1|585954_587058_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.5	1.6e-62
AYA39557.1|587087_588341_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.4	2.1e-98
AYA39558.1|588506_589037_+	shikimate kinase AroL	NA	NA	NA	NA	NA
AYA39559.1|589166_591314_+	bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase	NA	NA	NA	NA	NA
AYA39560.1|591319_592516_+	lysophospholipid transporter LplT	NA	NA	NA	NA	NA
AYA39561.1|592541_593045_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	44.6	5.6e-26
AYA39562.1|593148_594225_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.2	9.3e-111
AYA39563.1|594530_597158_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	38.6	5.5e-80
AYA39564.1|597403_597589_+	carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	3.8e-12
AYA39565.1|598737_600297_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
AYA39566.1|600460_600976_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
AYA39567.1|601128_602337_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	47.9	2.5e-48
AYA42415.1|602466_603711_-	DUF21 domain-containing protein	NA	NA	NA	NA	NA
AYA39568.1|603810_604602_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
AYA39569.1|604838_606200_+	signal recognition particle protein	NA	NA	NA	NA	NA
AYA39570.1|606338_606587_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AYA39571.1|606605_607154_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AYA39572.1|607193_607964_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 8
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	1226026	1322477	4288892	transposase,plate,tRNA	Enterobacteria_phage(16.67%)	52	NA	NA
AYA40019.1|1226026_1226920_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	68.8	7.7e-103
AYA40020.1|1228391_1228634_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40021.1|1229297_1229561_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	63.2	1.0e-18
AYA40022.1|1230098_1231505_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA	NA
AYA42443.1|1231563_1231788_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40023.1|1235042_1235546_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYA40024.1|1235587_1236646_-	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA	NA	NA	NA	NA
AYA40025.1|1236705_1236888_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40026.1|1237090_1237453_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42444.1|1237452_1237854_+	GFA family protein	NA	NA	NA	NA	NA
AYA40027.1|1238211_1238871_+	two-component system response regulator UvrY	NA	NA	NA	NA	NA
AYA40028.1|1238894_1240727_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AYA40029.1|1240783_1241332_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AYA40030.1|1241889_1243152_+	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	37.1	2.8e-66
AYA40031.1|1243457_1243670_+	AlpA family transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	44.2	1.3e-05
AYA40032.1|1243718_1244447_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42445.1|1244631_1244850_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40033.1|1244853_1247280_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	40.1	1.5e-148
AYA40034.1|1248482_1248974_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40035.1|1249253_1249664_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40036.1|1249692_1249920_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42446.1|1250315_1250735_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA40037.1|1250731_1251265_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA40038.1|1252058_1259675_+	toxin	NA	NA	NA	NA	NA
AYA40039.1|1259727_1264209_+	virulence protein	NA	NA	NA	NA	NA
AYA40040.1|1264262_1267313_+	insecticidal toxin complex (Tc) protein C	NA	NA	NA	NA	NA
AYA40041.1|1267412_1274984_-	insecticidal toxin complex protein A	NA	NA	NA	NA	NA
AYA40042.1|1275478_1275862_+	YgiW/YdeI family stress tolerance OB fold protein	NA	A0A1I9LJU6	Stx_converting_phage	55.1	1.4e-32
AYA40043.1|1276145_1276556_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40044.1|1276979_1277918_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	51.3	5.3e-62
AYA40045.1|1277982_1279929_-	chitinase	NA	A0A0E3JAQ3	Helicoverpa_armigera_nucleopolyhedrovirus	34.5	1.1e-40
AYA40046.1|1279974_1284150_-	insecticidal toxin complex protein A	NA	NA	NA	NA	NA
AYA40047.1|1284156_1287627_-	insecticidal toxin	NA	NA	NA	NA	NA
AYA40048.1|1287755_1289363_-	chitinase	NA	A0A1C8ZYZ0	Chrysodeixis_includens_nucleopolyhedrovirus	28.7	5.0e-36
AYA40049.1|1291569_1292778_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	48.4	8.7e-49
AYA40050.1|1297566_1297863_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA40051.1|1300665_1301217_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40052.1|1301439_1301727_+	DUF333 domain-containing protein	NA	NA	NA	NA	NA
AYA40053.1|1301811_1302327_-	disulfide bond formation protein DsbB	NA	NA	NA	NA	NA
AYA40054.1|1302505_1304050_-	sodium/proton antiporter NhaB	NA	NA	NA	NA	NA
AYA42447.1|1304307_1305030_+	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA	NA
AYA40055.1|1305521_1305995_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA42448.1|1307333_1307627_+|transposase	transposase	transposase	NA	NA	NA	NA
AYA40056.1|1307604_1307874_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40057.1|1308027_1312413_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40058.1|1312597_1313041_+|transposase	IS200/IS605 family transposase	transposase	A0A0N9PD00	Sulfolobus_monocaudavirus	41.4	1.1e-20
AYA40059.1|1313487_1314969_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42449.1|1315338_1316781_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40060.1|1316893_1317181_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40061.1|1317239_1318637_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40062.1|1318724_1321364_-	type VI secretion system ATPase TssH	NA	A0A223W0B1	Agrobacterium_phage	30.9	4.1e-83
AYA40063.1|1321442_1322477_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
>prophage 9
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	1458943	1485651	4288892	protease,transposase	Bodo_saltans_virus(20.0%)	20	NA	NA
AYA40149.1|1458943_1459990_+|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	32.0	4.2e-23
AYA40150.1|1461387_1463985_+	type I DNA topoisomerase	NA	E3T4K4	Cafeteria_roenbergensis_virus	36.8	1.0e-91
AYA40151.1|1464333_1465308_+	HTH-type transcriptional regulator CysB	NA	NA	NA	NA	NA
AYA40152.1|1465429_1466251_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40153.1|1466548_1469254_+	aconitate hydratase AcnA	NA	NA	NA	NA	NA
AYA40154.1|1469359_1469968_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	47.3	3.7e-40
AYA40155.1|1470118_1470409_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40156.1|1470564_1470879_+	LapA family protein	NA	NA	NA	NA	NA
AYA40157.1|1470885_1472055_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AYA40158.1|1472223_1472949_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
AYA40159.1|1472941_1473265_+	stress response translation initiation inhibitor YciH	NA	NA	NA	NA	NA
AYA42453.1|1473271_1473580_+|transposase	transposase	transposase	NA	NA	NA	NA
AYA40160.1|1473489_1474104_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA42454.1|1474165_1474942_-	class A beta-lactamase	NA	A0A1B0VBP7	Salmonella_phage	63.5	2.8e-85
AYA40161.1|1475238_1477182_-	exoribonuclease II	NA	NA	NA	NA	NA
AYA42455.1|1477662_1478100_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA40162.1|1478096_1478630_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA40163.1|1478846_1479374_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40164.1|1482019_1483042_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA40165.1|1484778_1485651_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	24.1	1.5e-05
>prophage 10
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	1534885	1625163	4288892	protease,transposase,integrase	Tupanvirus(66.67%)	56	1524135:1524151	1606295:1606311
1524135:1524151	attL	CCGACTTATTTTGCTCA	NA	NA	NA	NA
AYA40203.1|1534885_1535323_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA40204.1|1535393_1535717_-|transposase	transposase	transposase	A0A218MNC9	uncultured_virus	39.6	2.6e-08
AYA42458.1|1536722_1537160_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA40205.1|1538479_1539073_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40206.1|1539405_1539861_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
AYA42459.1|1540023_1540566_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYA42460.1|1540718_1541501_+	aldolase	NA	NA	NA	NA	NA
AYA40207.1|1541529_1542417_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AYA40208.1|1542566_1543388_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40209.1|1543608_1545150_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AYA40210.1|1545226_1545574_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
AYA40211.1|1547003_1547777_-	polyketide cyclase	NA	NA	NA	NA	NA
AYA40212.1|1547793_1549224_-	gamma-aminobutyraldehyde dehydrogenase	NA	NA	NA	NA	NA
AYA40213.1|1549547_1549751_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40214.1|1550692_1551232_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40215.1|1551408_1554165_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40216.1|1554420_1554654_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40217.1|1556075_1556573_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AYA40218.1|1556665_1564258_-	Mcf protein	NA	NA	NA	NA	NA
AYA40219.1|1564635_1566132_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AYA40220.1|1566147_1567479_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AYA40221.1|1567566_1567698_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYA40222.1|1567754_1568294_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AYA40223.1|1568414_1570421_+	TonB-dependent copper receptor	NA	NA	NA	NA	NA
AYA40224.1|1570563_1571055_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYA40225.1|1571302_1571563_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AYA40226.1|1571660_1571975_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYA40227.1|1572162_1572780_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AYA40228.1|1572861_1573305_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYA40229.1|1573313_1573436_-	NAD-dependent dehydratase	NA	NA	NA	NA	NA
AYA40230.1|1574108_1577210_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AYA40231.1|1577387_1578863_+|protease	serine protease	protease	NA	NA	NA	NA
AYA40232.1|1580492_1581497_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40233.1|1581498_1582344_-	2,4-dichlorophenoxyacetate dioxygenase	NA	NA	NA	NA	NA
AYA40234.1|1582801_1584769_-	tyrosine decarboxylase	NA	NA	NA	NA	NA
AYA40235.1|1585209_1586103_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40236.1|1586250_1586346_-	sortase B protein-sorting domain-containing protein	NA	NA	NA	NA	NA
AYA40237.1|1586369_1587134_+	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA	NA
AYA40238.1|1587261_1588206_+	universal stress protein UspE	NA	NA	NA	NA	NA
AYA40239.1|1588273_1589137_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40240.1|1589219_1590152_-	fatty acid desaturase	NA	NA	NA	NA	NA
AYA40241.1|1590263_1591355_-	amidinotransferase	NA	NA	NA	NA	NA
AYA40242.1|1591559_1592438_-	DMT family transporter	NA	NA	NA	NA	NA
AYA40243.1|1592722_1593739_-|integrase	integrase	integrase	A0A1P8DJ76	Virus_Rctr85	34.9	1.6e-43
AYA40244.1|1594197_1598409_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	24.4	1.9e-82
AYA40245.1|1599295_1605292_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	26.9	4.7e-79
AYA40246.1|1605288_1609953_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	26.2	1.4e-73
1606295:1606311	attR	TGAGCAAAATAAGTCGG	NA	NA	NA	NA
AYA40247.1|1609949_1614632_-	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	27.3	2.2e-79
AYA40248.1|1615191_1616580_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
AYA40249.1|1616590_1618123_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AYA40250.1|1619089_1620043_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AYA40251.1|1620189_1620678_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYA40252.1|1620668_1620941_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
AYA40253.1|1621360_1622833_+	amino acid permease	NA	NA	NA	NA	NA
AYA40254.1|1623005_1623767_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
AYA40255.1|1624140_1625163_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	1747547	1854778	4288892	transposase,protease,holin,tRNA,lysis	Tupanvirus(23.53%)	54	NA	NA
AYA40340.1|1747547_1748810_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AYA40341.1|1749083_1749701_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
AYA40342.1|1749700_1750576_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
AYA42464.1|1750644_1751583_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	38.9	7.0e-46
AYA40343.1|1752382_1754389_+	autotransporter domain-containing esterase	NA	NA	NA	NA	NA
AYA40344.1|1754490_1754901_-	DUF2583 domain-containing protein	NA	NA	NA	NA	NA
AYA40345.1|1755221_1755812_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AYA40346.1|1755924_1757016_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AYA40347.1|1757122_1758511_-	deaminase	NA	NA	NA	NA	NA
AYA40348.1|1758848_1759481_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40349.1|1762039_1762435_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40350.1|1762504_1762690_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40351.1|1763285_1763525_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40352.1|1763406_1763976_-	HutD family protein	NA	NA	NA	NA	NA
AYA40353.1|1764101_1765523_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AYA40354.1|1765974_1767495_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	57.4	3.8e-158
AYA40355.1|1768021_1769371_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AYA40356.1|1769360_1770368_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AYA40357.1|1770348_1770507_+	DUF2474 domain-containing protein	NA	NA	NA	NA	NA
AYA40358.1|1770598_1771414_-	phosphate starvation-inducible protein PhoH	NA	A0A1B2ICF6	Erwinia_phage	55.7	1.5e-76
AYA40359.1|1771766_1772759_-	deoxyribonuclease I	NA	NA	NA	NA	NA
AYA40360.1|1773035_1773218_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40361.1|1773508_1773946_-	universal stress protein	NA	A0A1W6JNV4	Morganella_phage	42.2	8.6e-23
AYA40362.1|1774049_1774478_-	universal stress protein	NA	A0A1W6JNV4	Morganella_phage	41.5	9.3e-22
AYA40363.1|1774695_1775946_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA	NA
AYA42465.1|1776140_1777085_-	pseudouridine-5'-phosphate glycosidase	NA	NA	NA	NA	NA
AYA40364.1|1777084_1778173_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AYA40365.1|1778705_1780034_-	arginine/agmatine antiporter	NA	NA	NA	NA	NA
AYA40366.1|1780051_1782325_-	arginine decarboxylase	NA	NA	NA	NA	NA
AYA40367.1|1783288_1784182_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40368.1|1785305_1785620_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40369.1|1785673_1785991_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40370.1|1786168_1786877_+|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	52.6	1.2e-61
AYA40371.1|1787366_1787897_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40372.1|1788582_1789422_-	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
AYA40373.1|1789503_1790613_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.3	5.6e-34
AYA40374.1|1790883_1791279_-	structural protein	NA	A0A0E3GMJ2	Enterobacteria_phage	51.5	2.0e-31
AYA40375.1|1791278_1791593_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	57.1	2.6e-29
AYA40376.1|1791999_1792697_-|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	52.6	3.7e-60
AYA40377.1|1792874_1793192_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40378.1|1795093_1795720_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40379.1|1796376_1812819_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	29.4	7.9e-185
AYA42466.1|1812833_1819562_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	24.3	1.5e-137
AYA40380.1|1819573_1837573_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	27.6	1.5e-168
AYA42467.1|1837666_1839355_+	putative pyridoxal-dependent aspartate 1-decarboxylase	NA	S4W1T5	Pandoravirus	25.8	3.6e-16
AYA40381.1|1839508_1840066_-	Attachment invasion locus protein precursor	NA	A0A1B0VBR9	Salmonella_phage	36.5	6.0e-21
AYA40382.1|1840647_1840950_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40383.1|1841430_1842183_+|protease	metalloprotease	protease	NA	NA	NA	NA
AYA40384.1|1842293_1842764_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40385.1|1843702_1844044_-|lysis	lysis protein	lysis	A0A2H4JHL8	uncultured_Caudovirales_phage	43.6	3.7e-13
AYA40386.1|1844561_1851737_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40387.1|1852923_1853385_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40388.1|1853674_1853851_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYA40389.1|1853863_1854778_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	50.9	3.4e-61
>prophage 12
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	1967741	2089607	4288892	transposase,head,plate,protease,tail	Escherichia_phage(17.39%)	119	NA	NA
AYA42471.1|1967741_1967936_+|transposase	transposase	transposase	NA	NA	NA	NA
AYA40469.1|1969154_1970546_+	L-cystine transporter	NA	NA	NA	NA	NA
AYA40470.1|1970759_1971644_-|protease	protease HtpX	protease	NA	NA	NA	NA
AYA40471.1|1971823_1973923_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.3	1.2e-82
AYA40472.1|1973942_1974653_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
AYA40473.1|1974748_1975246_-	GAF domain-containing protein	NA	NA	NA	NA	NA
AYA42472.1|1975836_1976190_-	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AYA40474.1|1976274_1977273_-	copper resistance protein CopD	NA	NA	NA	NA	NA
AYA40475.1|1977272_1977659_-	copper resistance protein CopC	NA	NA	NA	NA	NA
AYA40476.1|1977882_1978389_-	non-heme ferritin	NA	NA	NA	NA	NA
AYA40477.1|1978715_1978946_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	1.3e-14
AYA40478.1|1978992_1979946_-	prolyl aminopeptidase	NA	NA	NA	NA	NA
AYA40479.1|1980023_1980395_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40480.1|1980499_1980682_-	YoaH family protein	NA	NA	NA	NA	NA
AYA40481.1|1980827_1982198_+	aminodeoxychorismate synthase component 1	NA	A0A0B5J984	Pandoravirus	29.7	3.8e-40
AYA40482.1|1982194_1982764_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
AYA40483.1|1982933_1984298_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
AYA40484.1|1984837_1985803_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
AYA40485.1|1985880_1986681_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
AYA40486.1|1986685_1987543_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
AYA40487.1|1987655_1988114_+	DUF986 domain-containing protein	NA	NA	NA	NA	NA
AYA40488.1|1988364_1988985_+	manganese efflux pump MntP	NA	NA	NA	NA	NA
AYA40489.1|1989094_1989916_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA	NA
AYA40490.1|1990199_1991528_-	MFS transporter family glucose-6-phosphate receptor UhpC	NA	NA	NA	NA	NA
AYA40491.1|1991536_1993060_-	signal transduction histidine-protein kinase/phosphatase UhpB	NA	NA	NA	NA	NA
AYA40492.1|1993059_1993233_-	plasmid stabilization protein	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	49.0	3.8e-06
AYA40493.1|1993222_1993477_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	46.4	2.0e-11
AYA40494.1|1993916_1994297_+	DDE endonuclease	NA	NA	NA	NA	NA
AYA42473.1|1994303_1994921_-	transcriptional regulator UhpA	NA	NA	NA	NA	NA
AYA40495.1|1995062_1996439_-	hexose-6-phosphate:phosphate antiporter	NA	NA	NA	NA	NA
AYA40496.1|1997054_1997390_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40497.1|1997775_1998465_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AYA40498.1|1998465_1998852_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AYA40499.1|1999726_2000008_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40500.1|2001047_2002625_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA	NA
AYA42474.1|2002703_2004170_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.3	1.5e-87
AYA40501.1|2004342_2005704_+	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	33.5	5.8e-41
AYA40502.1|2005762_2007040_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AYA40503.1|2007493_2007970_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40504.1|2009110_2009563_-	DUF2335 domain-containing protein	NA	NA	NA	NA	NA
AYA40505.1|2009672_2009870_-	hypothetical protein	NA	A2SY83	Escherichia_phage	50.8	6.4e-10
AYA40506.1|2009970_2010684_+	helix-turn-helix domain-containing protein	NA	A0A286S2B2	Klebsiella_phage	41.3	3.0e-41
AYA40507.1|2011387_2012251_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	39.8	1.1e-32
AYA40508.1|2012910_2013177_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	61.8	6.6e-18
AYA40509.1|2014016_2014493_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA40510.1|2016512_2016842_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
AYA40511.1|2016857_2017136_-	acylphosphatase	NA	NA	NA	NA	NA
AYA40512.1|2017696_2018737_+|transposase	IS481 family transposase	transposase	A0A077SLK2	Escherichia_phage	80.9	6.8e-167
AYA40513.1|2018961_2019375_-	CoA-binding protein	NA	NA	NA	NA	NA
AYA40514.1|2019520_2019739_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AYA40515.1|2019732_2020923_-	DNA helicase IV	NA	NA	NA	NA	NA
AYA42475.1|2021569_2022709_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AYA40516.1|2023658_2023973_-	DUF1902 domain-containing protein	NA	NA	NA	NA	NA
AYA40517.1|2024667_2025024_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40518.1|2025020_2025920_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA40519.1|2026192_2027455_-	hypothetical protein	NA	A0A1P8DTJ0	Proteus_phage	45.0	3.0e-84
AYA40520.1|2027993_2029034_+|transposase	IS481 family transposase	transposase	A0A077SLK2	Escherichia_phage	80.9	6.8e-167
AYA40521.1|2029427_2029709_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40522.1|2031206_2031968_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.0	1.4e-12
AYA40523.1|2032407_2032995_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	71.3	7.7e-67
AYA40524.1|2032991_2033174_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40525.1|2033402_2034059_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AYA40526.1|2034068_2034458_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	31.3	1.3e-06
AYA40527.1|2034539_2035592_-	chemotaxis response regulator protein-glutamate methylesterase	NA	Q56AR1	Bacillus_thuringiensis_phage	35.2	1.6e-06
AYA40528.1|2035584_2036472_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA	NA
AYA40529.1|2036487_2038110_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.5	7.7e-08
AYA40530.1|2038166_2039870_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	66.7	6.4e-05
AYA42476.1|2040059_2040557_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AYA40531.1|2040651_2042799_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AYA42477.1|2042805_2043807_-	motility protein MotB	NA	NA	NA	NA	NA
AYA40532.1|2043809_2044691_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AYA40533.1|2044826_2045411_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AYA40534.1|2045413_2045764_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AYA40535.1|2048318_2048471_-	magnesium ABC transporter ATPase	NA	NA	NA	NA	NA
AYA40536.1|2048467_2049091_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40537.1|2049375_2050428_-	dihydroorotase	NA	NA	NA	NA	NA
AYA40538.1|2052125_2052593_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA40539.1|2052875_2054456_+	L-lactate permease	NA	NA	NA	NA	NA
AYA40540.1|2054494_2055637_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AYA40541.1|2055694_2056207_-	DUF1543 domain-containing protein	NA	NA	NA	NA	NA
AYA40542.1|2057241_2057760_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40543.1|2057873_2058815_-	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	44.0	5.3e-62
AYA40544.1|2059051_2060110_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
AYA40545.1|2061048_2061303_-	biofilm formation regulator BssS	NA	NA	NA	NA	NA
AYA40546.1|2061968_2062181_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	77.1	1.7e-24
AYA40547.1|2062670_2063180_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40548.1|2063795_2064416_-|tail	tail fiber assembly protein	tail	G4KKN5	Yersinia_phage	31.9	6.5e-24
AYA40549.1|2064415_2065498_-	hypothetical protein	NA	A0A0K1YA92	Cronobacter_phage	43.8	2.8e-22
AYA40550.1|2066574_2067120_-|plate	phage baseplate assembly protein V	plate	A0A2I7S9F6	Vibrio_phage	35.9	3.7e-23
AYA40551.1|2067116_2068121_-|tail	phage tail protein	tail	C9DGQ3	Escherichia_phage	38.4	1.1e-60
AYA40552.1|2068113_2069514_-	DNA circulation protein	NA	NA	NA	NA	NA
AYA40553.1|2071319_2072243_-|head	head protein	head	A0A0C4UQR9	Shigella_phage	57.7	5.3e-107
AYA40554.1|2072242_2073460_-|protease	protease	protease	C9DGP0	Escherichia_phage	39.9	7.9e-58
AYA40555.1|2073626_2074097_-	phage virion morphogenesis protein	NA	C9DGN8	Escherichia_phage	43.5	2.3e-21
AYA40556.1|2074093_2075401_-|head	phage head morphogenesis protein	head	C9DGN7	Escherichia_phage	48.1	1.2e-112
AYA40557.1|2075384_2076962_-	DUF935 domain-containing protein	NA	A0A0C4UQR8	Shigella_phage	50.5	1.8e-139
AYA40558.1|2076952_2078503_-	hypothetical protein	NA	A0A2I7S9C5	Vibrio_phage	60.7	6.8e-155
AYA40559.1|2078502_2079075_-	DUF3486 family protein	NA	M4MCR3	Vibrio_phage	59.8	1.2e-53
AYA42478.1|2079078_2079366_-	ArsR family transcriptional regulator	NA	A0A0C4UR00	Shigella_phage	61.7	4.9e-27
AYA42479.1|2079374_2079668_-	DUF2730 family protein	NA	M4M9P7	Vibrio_phage	37.2	1.2e-12
AYA40560.1|2079660_2079972_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40561.1|2079862_2080372_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40562.1|2080474_2080702_-	hypothetical protein	NA	A0A2D1GNW8	Pseudomonas_phage	52.8	5.5e-13
AYA40563.1|2080685_2080943_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40564.1|2080942_2081452_-	peptidoglycan-binding protein	NA	W8EIS8	Vibrio_phage	39.6	7.7e-23
AYA40565.1|2081557_2081983_-	transcriptional regulator	NA	A0A0C4UQZ9	Shigella_phage	37.9	1.3e-18
AYA40566.1|2081995_2082304_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40567.1|2082304_2082811_-	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	45.2	2.4e-29
AYA40568.1|2082807_2083344_-	regulatory protein GemA	NA	A0A0C4UQU3	Shigella_phage	41.9	1.3e-28
AYA40569.1|2083510_2083951_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40570.1|2084033_2084222_-	hypothetical protein	NA	A0A2D1GNV5	Pseudomonas_phage	59.0	3.5e-13
AYA40571.1|2084202_2084436_-	ANR family transcriptional regulator	NA	NA	NA	NA	NA
AYA40572.1|2084437_2085067_-	DUF3164 family protein	NA	Q6QIE4	Burkholderia_phage	68.0	3.8e-72
AYA40573.1|2085098_2085308_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40574.1|2085323_2085578_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40575.1|2085574_2086528_-	DNA transposition protein	NA	A0A0C4UQR3	Shigella_phage	53.3	2.7e-85
AYA40576.1|2088106_2088325_-	transcriptional regulator	NA	M1PVU4	Vibrio_phage	66.7	9.2e-18
AYA40577.1|2088483_2089098_+	XRE family transcriptional regulator	NA	A0A0A7DJB4	Pseudomonas_phage	41.0	3.4e-09
AYA40578.1|2089256_2089607_-	DUF3486 family protein	NA	M4MCT3	Vibrio_phage	38.9	2.5e-12
>prophage 13
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	2206451	2276908	4288892	protease,transposase,tRNA	Tupanvirus(16.67%)	56	NA	NA
AYA40661.1|2206451_2207492_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA40662.1|2208362_2209262_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA42484.1|2209470_2210508_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA40663.1|2210549_2210831_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42485.1|2211125_2212160_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA40664.1|2212245_2212473_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40665.1|2212517_2213141_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
AYA40666.1|2213381_2213954_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
AYA40667.1|2214052_2214352_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40668.1|2214507_2215617_+	porin OmpA	NA	NA	NA	NA	NA
AYA40669.1|2215712_2216162_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
AYA40670.1|2216368_2218099_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
AYA40671.1|2218182_2218701_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
AYA40672.1|2218806_2218965_-	ribosome modulation factor	NA	NA	NA	NA	NA
AYA40673.1|2219169_2219796_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
AYA40674.1|2219795_2221445_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
AYA40675.1|2221446_2222715_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
AYA40676.1|2222765_2224676_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.3	2.8e-49
AYA40677.1|2224680_2226813_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
AYA40678.1|2226932_2228045_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYA40679.1|2228168_2228720_-	cell division protein ZapC	NA	NA	NA	NA	NA
AYA40680.1|2228878_2229889_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AYA40681.1|2230127_2232746_-	aminopeptidase N	NA	NA	NA	NA	NA
AYA40682.1|2233138_2234353_+	nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	32.4	1.0e-44
AYA40683.1|2234561_2235962_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	36.6	6.9e-82
AYA40684.1|2236270_2237362_+	porin	NA	Q1MVN1	Enterobacteria_phage	56.7	1.2e-102
AYA40685.1|2237604_2238795_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AYA40686.1|2238892_2239525_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	27.5	7.3e-23
AYA40687.1|2239816_2240365_-	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	35.8	1.6e-05
AYA40688.1|2240740_2242459_-	L,D-transpeptidase	NA	NA	NA	NA	NA
AYA40689.1|2242495_2242621_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
AYA40690.1|2242615_2242972_-	acid phosphatase	NA	NA	NA	NA	NA
AYA40691.1|2243186_2247650_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
AYA40692.1|2247646_2248369_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
AYA40693.1|2248349_2249672_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
AYA40694.1|2249668_2250454_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
AYA40695.1|2250622_2251432_+	envelope biogenesis factor ElyC	NA	NA	NA	NA	NA
AYA40696.1|2251505_2252255_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AYA40697.1|2252258_2252438_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40698.1|2252560_2253556_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AYA42486.1|2253552_2255301_-	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	32.6	8.7e-66
AYA40699.1|2255335_2257681_-	ComEC family protein	NA	NA	NA	NA	NA
AYA40700.1|2257884_2258175_-	integration host factor subunit beta	NA	A0A0H3UZA0	Geobacillus_virus	38.9	8.5e-11
AYA40701.1|2258250_2259924_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AYA40702.1|2260118_2260805_-	(d)CMP kinase	NA	NA	NA	NA	NA
AYA40703.1|2261024_2262311_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AYA42487.1|2262469_2263558_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	46.6	1.8e-82
AYA40704.1|2263932_2266992_+	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	26.7	6.2e-51
AYA40705.1|2267048_2268092_-	L-asparaginase 2	NA	NA	NA	NA	NA
AYA40706.1|2268240_2270001_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AYA40707.1|2270329_2271187_+	formate transporter FocA	NA	NA	NA	NA	NA
AYA40708.1|2271245_2273528_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.4	6.7e-159
AYA40709.1|2273657_2274398_+	pyruvate formate lyase 1-activating protein	NA	NA	NA	NA	NA
AYA40710.1|2274896_2275712_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40711.1|2275887_2276076_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40712.1|2276146_2276908_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.0	1.4e-12
>prophage 14
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	2286286	2296809	4288892	protease,tRNA	Bacillus_phage(33.33%)	10	NA	NA
AYA40719.1|2286286_2288056_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	24.5	4.3e-28
AYA40720.1|2288058_2289801_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	24.5	4.7e-19
AYA40721.1|2289809_2290517_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AYA40722.1|2290654_2290873_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AYA40723.1|2290964_2293250_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.6	8.7e-167
AYA40724.1|2293281_2293602_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	48.8	4.8e-15
AYA40725.1|2293934_2294165_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	59.7	4.1e-16
AYA40726.1|2294221_2294542_-	DUF2813 domain-containing protein	NA	NA	NA	NA	NA
AYA40727.1|2294853_2295756_+	lysine exporter LysO family protein	NA	NA	NA	NA	NA
AYA40728.1|2296080_2296809_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	34.6	2.5e-27
>prophage 15
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	2320176	2419478	4288892	transposase,plate,tail,tRNA,lysis	Salmonella_phage(18.18%)	89	NA	NA
AYA40753.1|2320176_2320671_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
AYA40754.1|2320993_2322400_-	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.3	2.7e-41
AYA40755.1|2322685_2324266_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	45.3	7.4e-40
AYA40756.1|2324514_2329617_+	hypothetical protein	NA	A0A0M3ULH6	Salmonella_phage	46.7	2.1e-43
AYA40757.1|2329782_2331651_-	outer membrane assembly protein AsmA	NA	NA	NA	NA	NA
AYA40758.1|2331727_2332309_-	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	41.6	3.7e-29
AYA40759.1|2332355_2332997_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.2	9.6e-39
AYA40760.1|2333690_2334803_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AYA40761.1|2334985_2337013_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	29.3	4.4e-61
AYA42489.1|2337161_2337614_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40762.1|2337607_2338303_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
AYA40763.1|2338494_2339379_+	cytidine deaminase	NA	NA	NA	NA	NA
AYA40764.1|2339667_2341365_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
AYA40765.1|2341600_2342323_+	outer membrane permeability protein SanA	NA	NA	NA	NA	NA
AYA40766.1|2342366_2343515_-	DUF418 family protein	NA	NA	NA	NA	NA
AYA40767.1|2343530_2344199_-	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	55.8	1.7e-54
AYA40768.1|2344347_2345532_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA	NA
AYA40769.1|2345732_2346971_+	molybdopterin molybdotransferase	NA	NA	NA	NA	NA
AYA42490.1|2346986_2347742_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
AYA40770.1|2347786_2349382_-	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	29.7	1.8e-62
AYA40771.1|2349851_2350295_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYA40772.1|2350337_2350952_-	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	37.6	7.3e-20
AYA40773.1|2351092_2351983_+	threonine/homoserine exporter RhtA	NA	NA	NA	NA	NA
AYA40774.1|2352164_2352668_+	DNA starvation/stationary phase protection protein Dps	NA	A0A222YTY5	Streptomyces_phage	32.1	2.1e-09
AYA40775.1|2352788_2353010_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
AYA40776.1|2353573_2356576_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	29.0	3.8e-53
AYA40777.1|2356637_2358773_-	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	27.8	4.9e-47
AYA40778.1|2359263_2360103_+	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA	NA
AYA40779.1|2360401_2361499_-|transposase	ISAs1-like element ISXne3 family transposase	transposase	NA	NA	NA	NA
AYA40780.1|2361971_2363066_+	glycosyl transferase	NA	NA	NA	NA	NA
AYA40781.1|2364837_2365578_+	beta1,4-galactosyltransferase waax	NA	A0A1V0SJT4	Klosneuvirus	25.6	1.6e-05
AYA42491.1|2365805_2366462_-|tail	phage tail protein	tail	K4I0Q7	Escherichia_phage	37.7	5.4e-29
AYA40782.1|2367352_2368408_+|tail	tail fiber protein	tail	M1TAS6	Escherichia_phage	46.9	2.6e-25
AYA42492.1|2368618_2369575_+	hypothetical protein	NA	NA	NA	NA	NA
AYA40783.1|2369720_2370314_-|tail	tail fiber assembly protein	tail	A0A218M4J2	Erwinia_phage	51.5	1.7e-50
AYA40784.1|2370313_2370772_-|tail	phage tail protein	tail	A0A0F7LCR3	Escherichia_phage	47.0	4.3e-33
AYA42493.1|2371653_2372178_+|tail	phage tail protein	tail	A0A0F6TLA4	Escherichia_coli_O157_typing_phage	41.3	1.0e-25
AYA40785.1|2372359_2372896_-|tail	tail fiber assembly protein	tail	U5N0T1	Enterobacteria_phage	39.3	4.4e-29
AYA40786.1|2372895_2374893_-	hypothetical protein	NA	S4TP62	Salmonella_phage	32.6	9.5e-85
AYA40787.1|2374889_2375498_-|tail	phage tail protein I	tail	F1BUP2	Erwinia_phage	69.4	6.3e-80
AYA40788.1|2375490_2376399_-|plate	baseplate assembly protein	plate	A0A0F7LCQ9	Escherichia_phage	71.5	6.2e-116
AYA40789.1|2376421_2376772_-|plate	baseplate assembly protein	plate	F1BUP4	Erwinia_phage	62.2	4.8e-32
AYA40790.1|2376768_2377404_-|plate	phage baseplate assembly protein V	plate	A0A2I8TV69	Erwinia_phage	65.3	2.5e-71
AYA40791.1|2377552_2378089_-|lysis	lysis protein	lysis	H2DE61	Erwinia_phage	57.9	2.4e-19
AYA40792.1|2378090_2378354_-	hypothetical protein	NA	A0A2H4FNF0	Salmonella_phage	48.8	1.2e-14
AYA40793.1|2378363_2378567_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	56.7	5.9e-19
AYA40794.1|2378846_2379083_-	DinI family protein	NA	A0A0M4S6H1	Salmonella_phage	38.2	1.7e-09
AYA40795.1|2379101_2379314_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40796.1|2379466_2381410_-	replication endonuclease	NA	F1BUM9	Cronobacter_phage	53.7	4.1e-181
AYA40797.1|2381498_2381846_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40798.1|2382064_2382682_+	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	44.7	2.4e-47
AYA40799.1|2382814_2383357_-	N-acetyltransferase	NA	NA	NA	NA	NA
AYA42494.1|2383454_2383949_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA	NA
AYA40800.1|2385206_2386022_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYA40801.1|2386106_2386787_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40802.1|2386900_2387641_-	3-oxoacyl-(ACP) reductase	NA	NA	NA	NA	NA
AYA40803.1|2387933_2389541_+	AMP-dependent synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	23.4	4.7e-26
AYA40804.1|2390471_2391029_+	inclusion body protein	NA	NA	NA	NA	NA
AYA40805.1|2391068_2392145_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
AYA40806.1|2392122_2392767_-	adenosylcobalamin/alpha-ribazole phosphatase	NA	NA	NA	NA	NA
AYA40807.1|2392801_2393560_-	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA	NA
AYA40808.1|2393556_2394105_-	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA	NA
AYA40809.1|2394125_2395703_-	cobyric acid synthase	NA	NA	NA	NA	NA
AYA40810.1|2395699_2396527_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	26.3	3.4e-12
AYA40811.1|2396563_2397241_-	energy-coupling factor ABC transporter transmembrane protein	NA	NA	NA	NA	NA
AYA42495.1|2397227_2397509_-	energy-coupling factor ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYA40812.1|2397574_2398306_-	energy-coupling factor ABC transporter permease	NA	NA	NA	NA	NA
AYA40813.1|2398309_2399056_-	cobalt-factor II C(20)-methyltransferase	NA	NA	NA	NA	NA
AYA40814.1|2399052_2399844_-	sirohydrochlorin cobaltochelatase	NA	NA	NA	NA	NA
AYA40815.1|2399902_2400694_-	cobalt-precorrin-6A reductase	NA	NA	NA	NA	NA
AYA40816.1|2400690_2401416_-	precorrin-3B C(17)-methyltransferase	NA	NA	NA	NA	NA
AYA40817.1|2401409_2402489_-	cobalt-precorrin 5A hydrolase	NA	NA	NA	NA	NA
AYA40818.1|2402469_2403258_-	cobalt-precorrin-4 methyltransferase	NA	NA	NA	NA	NA
AYA40819.1|2403250_2403850_-	decarboxylating cobalt-precorrin-6B (C(15))-methyltransferase	NA	NA	NA	NA	NA
AYA40820.1|2403839_2404469_-	cobalt-precorrin-7 (C(5))-methyltransferase	NA	NA	NA	NA	NA
AYA42496.1|2404465_2405626_-	cobalt-precorrin-5B (C(1))-methyltransferase	NA	NA	NA	NA	NA
AYA40821.1|2405639_2406281_-	cobalt-precorrin-8 methylmutase	NA	NA	NA	NA	NA
AYA40822.1|2406320_2407298_-	cobalamin biosynthesis protein	NA	NA	NA	NA	NA
AYA40823.1|2407294_2408683_-	cobyrinate a,c-diamide synthase	NA	NA	NA	NA	NA
AYA42497.1|2409505_2410306_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AYA40824.1|2410305_2411379_+	threonine-phosphate decarboxylase	NA	NA	NA	NA	NA
AYA40825.1|2411371_2412232_+	GHMP kinase	NA	NA	NA	NA	NA
AYA40826.1|2412608_2412791_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40827.1|2413099_2413507_+	JHE-like toxin PirA	NA	NA	NA	NA	NA
AYA40828.1|2413575_2414865_+	toxin PirB	NA	NA	NA	NA	NA
AYA40829.1|2415296_2416364_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AYA40830.1|2416460_2416772_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40831.1|2416827_2417760_-	hypothetical protein	NA	NA	NA	NA	NA
AYA40832.1|2417963_2419478_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	36.8	2.7e-84
>prophage 16
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	2526612	2541837	4288892	protease,transposase	uncultured_virus(25.0%)	11	NA	NA
AYA40923.1|2526612_2527113_+|protease	membrane-associated Zn-dependent protease 1	protease	NA	NA	NA	NA
AYA40924.1|2528011_2528335_+|transposase	transposase	transposase	A0A218MNC9	uncultured_virus	39.6	2.6e-08
AYA40925.1|2528405_2528843_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA40926.1|2529472_2530213_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
AYA40927.1|2530422_2531349_-	agmatinase	NA	NA	NA	NA	NA
AYA40928.1|2532066_2532987_+	hypothetical protein	NA	A0A0F6TLA4	Escherichia_coli_O157_typing_phage	37.6	1.6e-26
AYA40929.1|2533128_2535033_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
AYA40930.1|2535770_2536925_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	62.0	2.1e-124
AYA40931.1|2536996_2537896_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA40932.1|2539820_2540771_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	31.0	2.6e-40
AYA42500.1|2540799_2541837_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	2631664	2692827	4288892	protease,transposase,tRNA	uncultured_virus(13.33%)	53	NA	NA
AYA42502.1|2631664_2632300_-|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	protease	NA	NA	NA	NA
AYA41005.1|2632267_2632954_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.2	7.2e-32
AYA41006.1|2632950_2635383_+	ABC transporter permease	NA	NA	NA	NA	NA
AYA41007.1|2635471_2636776_-	MFS transporter	NA	NA	NA	NA	NA
AYA41008.1|2636803_2637607_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41009.1|2638054_2639122_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AYA42503.1|2639118_2639589_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA	NA
AYA41010.1|2639820_2640543_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
AYA41011.1|2640571_2641066_-	peptidylprolyl isomerase B	NA	NA	NA	NA	NA
AYA41012.1|2641397_2642780_+|tRNA	cysteine--tRNA ligase	tRNA	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	34.4	4.1e-42
AYA41013.1|2642925_2643162_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41014.1|2643619_2644492_+|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	24.1	1.5e-05
AYA41015.1|2644732_2645203_+	cysteine hydrolase	NA	NA	NA	NA	NA
AYA41016.1|2645487_2645835_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41017.1|2646108_2646648_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	32.5	1.8e-17
AYA41018.1|2646784_2647438_-	carbonate dehydratase	NA	NA	NA	NA	NA
AYA41019.1|2647619_2648543_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	32.5	5.3e-22
AYA41020.1|2648542_2649313_+	ABC transporter permease	NA	NA	NA	NA	NA
AYA41021.1|2649427_2650684_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41022.1|2651085_2652051_+	EamA family transporter	NA	NA	NA	NA	NA
AYA41023.1|2652028_2652964_+	AEC family transporter	NA	NA	NA	NA	NA
AYA41024.1|2652959_2653190_+	hypothetical protein	NA	A0A2H4PQR8	Staphylococcus_phage	51.4	2.4e-16
AYA41025.1|2653292_2654150_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AYA41026.1|2654188_2654980_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
AYA41027.1|2655008_2655488_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AYA41028.1|2655487_2657050_-	polynucleotide adenylyltransferase PcnB	NA	G3MAR3	Bacillus_virus	30.9	4.2e-27
AYA42504.1|2657157_2658051_-|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
AYA41029.1|2658110_2658566_-	RNA polymerase-binding transcription factor DksA	NA	NA	NA	NA	NA
AYA41030.1|2658761_2659472_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
AYA41031.1|2659607_2662088_+	ATP-dependent helicase HrpB	NA	A0A2H4UU36	Bodo_saltans_virus	29.4	4.3e-42
AYA41032.1|2662139_2664617_+	bifunctional glycosyl transferase/transpeptidase	NA	NA	NA	NA	NA
AYA41033.1|2664726_2666010_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AYA41034.1|2666233_2666578_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	48.6	2.9e-26
AYA41035.1|2666658_2667558_-	EamA family transporter	NA	NA	NA	NA	NA
AYA42505.1|2667642_2668485_-	vitamin B12 ABC transporter substrate-binding protein BtuF	NA	NA	NA	NA	NA
AYA41036.1|2668515_2669211_-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
AYA41037.1|2669324_2670851_+	dGTPase	NA	NA	NA	NA	NA
AYA41038.1|2670834_2673183_-	response regulator	NA	A0A1V0SGX0	Hokovirus	33.7	4.0e-50
AYA42506.1|2673236_2674592_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	27.2	6.4e-32
AYA41039.1|2674601_2676839_+	GTP diphosphokinase	NA	NA	NA	NA	NA
AYA42507.1|2676843_2677644_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
AYA41040.1|2677674_2677899_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41041.1|2677895_2679533_+	CTP synthase (glutamine hydrolyzing)	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.2	1.4e-153
AYA41042.1|2679634_2680936_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	57.1	3.1e-129
AYA41043.1|2681288_2682674_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
AYA41044.1|2683240_2684029_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41045.1|2684101_2685586_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AYA41046.1|2685957_2687235_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
AYA41047.1|2687729_2688152_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41048.1|2688197_2689097_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA41049.1|2689197_2690358_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AYA41050.1|2690535_2691453_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	44.6	1.5e-56
AYA41051.1|2692503_2692827_-|transposase	transposase	transposase	A0A218MNC9	uncultured_virus	40.6	2.3e-09
>prophage 18
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	2731544	2784136	4288892	protease,transposase	Enterobacteria_phage(14.29%)	46	NA	NA
AYA41083.1|2731544_2732576_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA41084.1|2732807_2733422_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41085.1|2733439_2734234_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41086.1|2734226_2735060_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41087.1|2735131_2735788_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AYA41088.1|2736216_2736627_+	carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AYA41089.1|2736623_2737802_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
AYA42510.1|2738606_2740940_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	43.7	3.4e-174
AYA41090.1|2741021_2741210_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41091.1|2741202_2741421_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41092.1|2741450_2741633_+	DUF3950 domain-containing protein	NA	NA	NA	NA	NA
AYA41093.1|2741765_2742590_-	antA/AntB antirepressor family protein	NA	A0A0A7RVQ9	Clostridium_phage	42.8	5.2e-21
AYA41094.1|2742754_2743036_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AYA41095.1|2743180_2744170_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41096.1|2744198_2745422_-	DUF4102 domain-containing protein	NA	A0A2H4JB45	uncultured_Caudovirales_phage	60.5	1.0e-150
AYA41097.1|2748901_2749420_-	4-hydroxyphenylacetate 3-monooxygenase, reductase component	NA	NA	NA	NA	NA
AYA41098.1|2749441_2751004_-	4-hydroxyphenylacetate 3-monooxygenase, oxygenase component	NA	NA	NA	NA	NA
AYA41099.1|2751636_2751900_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41100.1|2752401_2753307_-	4-hydroxyphenylacetate catabolism regulatory protein HpaA	NA	NA	NA	NA	NA
AYA41101.1|2753358_2754723_-	4-hydroxyphenylacetate permease	NA	NA	NA	NA	NA
AYA41102.1|2754844_2755651_-	4-hydroxy-2-oxoheptanedioate aldolase	NA	NA	NA	NA	NA
AYA41103.1|2755685_2756489_-	2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA	NA	NA	NA	NA
AYA41104.1|2756495_2757968_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AYA41105.1|2758030_2758420_-	5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA	NA	NA	NA	NA
AYA41106.1|2758487_2759339_-	3,4-dihydroxyphenylacetate 2,3-dioxygenase	NA	NA	NA	NA	NA
AYA41107.1|2759405_2760872_-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AYA41108.1|2760868_2761633_-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase	NA	NA	NA	NA	NA
AYA41109.1|2761629_2762262_-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase	NA	NA	NA	NA	NA
AYA41110.1|2762650_2763106_+	homoprotocatechuate degradation operon regulator HpaR	NA	NA	NA	NA	NA
AYA41111.1|2764007_2764337_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41112.1|2764436_2764703_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	63.1	5.6e-17
AYA41113.1|2764958_2765828_-	DNA-binding protein	NA	NA	NA	NA	NA
AYA41114.1|2766590_2767547_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA41115.1|2767586_2767793_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41116.1|2769733_2770171_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA41117.1|2770241_2770565_-|transposase	transposase	transposase	A0A218MNC9	uncultured_virus	39.6	2.6e-08
AYA41118.1|2773630_2773936_-	XRE family transcriptional regulator	NA	A0A1W6JNW5	Morganella_phage	40.3	5.1e-06
AYA41119.1|2774006_2774231_-	protein NilQ	NA	NA	NA	NA	NA
AYA41120.1|2775394_2776627_-	MFS transporter	NA	NA	NA	NA	NA
AYA42511.1|2777027_2778302_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
AYA41121.1|2778348_2779077_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	29.9	5.5e-06
AYA41122.1|2779089_2779800_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41123.1|2779883_2780783_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41124.1|2781139_2782039_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA41125.1|2782218_2782539_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41126.1|2782687_2784136_-|protease	metalloprotease TldD	protease	NA	NA	NA	NA
>prophage 19
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	2800959	2824618	4288892	transposase,tRNA	Vibrio_phage(20.0%)	23	NA	NA
AYA41141.1|2800959_2801943_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AYA41142.1|2801950_2802247_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AYA41143.1|2802550_2802817_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	67.7	3.9e-18
AYA41144.1|2803107_2803296_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
AYA41145.1|2803295_2804177_-	DNA-binding protein	NA	NA	NA	NA	NA
AYA41146.1|2805281_2806043_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.0	2.4e-12
AYA41147.1|2807027_2808068_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA41148.1|2808064_2808853_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYA41149.1|2808869_2809757_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA41150.1|2810049_2810373_+|transposase	transposase	transposase	A0A218MNC9	uncultured_virus	40.6	1.4e-09
AYA41151.1|2810443_2810881_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA41152.1|2810881_2811802_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	30.2	2.4e-22
AYA41153.1|2812200_2813148_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYA41154.1|2813419_2814139_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYA41155.1|2814157_2815084_+	EamA family transporter	NA	NA	NA	NA	NA
AYA41156.1|2815541_2816573_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA41157.1|2816603_2817464_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41158.1|2817535_2818009_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA41159.1|2818005_2818539_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA41160.1|2818507_2818825_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0H3TLT9	Faustovirus	32.0	7.7e-05
AYA41161.1|2819228_2820845_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
AYA41162.1|2822294_2823251_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA41163.1|2823583_2824618_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	3170787	3210745	4288892	transposase,tRNA	Klosneuvirus(14.29%)	30	NA	NA
AYA41464.1|3170787_3171903_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AYA41465.1|3172023_3172500_-	bacterioferritin	NA	NA	NA	NA	NA
AYA41466.1|3172575_3172770_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
AYA41467.1|3173661_3175071_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
AYA42526.1|3175160_3175355_+|transposase	transposase	transposase	NA	NA	NA	NA
AYA41468.1|3175679_3176009_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41469.1|3179007_3180192_-	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	27.3	6.8e-14
AYA41470.1|3181019_3181976_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA41471.1|3183515_3184466_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	33.2	1.4e-30
AYA41472.1|3184500_3185460_-	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA	NA
AYA41473.1|3185456_3186497_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
AYA41474.1|3192318_3193182_-	glutamate racemase	NA	NA	NA	NA	NA
AYA41475.1|3193126_3194971_-	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.4	3.7e-14
AYA41476.1|3195159_3196260_+|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
AYA41477.1|3196342_3196720_-	YijD family membrane protein	NA	NA	NA	NA	NA
AYA41478.1|3196754_3197405_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
AYA41479.1|3197613_3199011_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
AYA41480.1|3199002_3199920_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
AYA41481.1|3200019_3201393_-	argininosuccinate lyase	NA	NA	NA	NA	NA
AYA41482.1|3201444_3202656_-	argininosuccinate synthase	NA	NA	NA	NA	NA
AYA41483.1|3202673_3203447_-	acetylglutamate kinase	NA	NA	NA	NA	NA
AYA41484.1|3203514_3204519_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AYA41485.1|3204621_3205779_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
AYA41486.1|3205942_3206143_-	hypothetical protein	NA	Q7Y3V7	Yersinia_phage	83.3	6.9e-20
AYA41487.1|3206216_3207359_-|transposase	transposase	transposase	A0A077SLN2	Escherichia_phage	69.0	8.3e-134
AYA41488.1|3207415_3207844_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	50.4	2.4e-25
AYA41489.1|3207954_3208116_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
AYA41490.1|3208263_3209151_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
AYA41491.1|3209524_3209803_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
AYA41492.1|3210049_3210745_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	37.7	5.0e-33
>prophage 22
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	3317433	3323440	4288892		Cronobacter_phage(33.33%)	7	NA	NA
AYA41588.1|3317433_3318744_-	nucleotide sugar dehydrogenase	NA	A7IWZ0	Paramecium_bursaria_Chlorella_virus	30.1	6.5e-42
AYA41589.1|3319123_3320506_-	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	27.1	2.0e-20
AYA41590.1|3320502_3321195_-	DNA-binding transcriptional regulator CpxR	NA	Q6XM27	Feldmannia_irregularis_virus	29.5	8.9e-06
AYA41591.1|3321347_3321848_+	periplasmic heavy metal sensor	NA	NA	NA	NA	NA
AYA41592.1|3322220_3322664_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	34.7	6.7e-07
AYA41593.1|3322795_3322969_+	mRNA interferase HicA	NA	A0A0M3LQ86	Mannheimia_phage	66.7	2.2e-14
AYA41594.1|3323023_3323440_+	type II toxin-antitoxin system HicB family antitoxin	NA	F1C593	Cronobacter_phage	55.6	1.8e-33
>prophage 23
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	3473894	3505958	4288892	transposase,plate	Staphylococcus_phage(50.0%)	23	NA	NA
AYA41726.1|3473894_3474590_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	37.7	1.5e-32
AYA41727.1|3475538_3475730_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41728.1|3475832_3476717_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA41729.1|3477902_3478652_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYA41730.1|3478655_3478961_-	MFS transporter	NA	NA	NA	NA	NA
AYA41731.1|3480612_3480798_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41732.1|3481332_3482526_+	CmlA/FloR family chloramphenicol efflux MFS transporter	NA	S4TR35	Salmonella_phage	30.9	4.4e-29
AYA42539.1|3485201_3485405_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41733.1|3485754_3486000_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41734.1|3487537_3487627_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41735.1|3487724_3487931_-	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA	NA
AYA41736.1|3488024_3489002_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
AYA41737.1|3489196_3493609_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA	NA
AYA41738.1|3493724_3495398_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
AYA41739.1|3496027_3496546_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
AYA41740.1|3497476_3497974_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AYA41741.1|3497993_3499472_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AYA41742.1|3499474_3499915_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AYA41743.1|3499915_3501748_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AYA41744.1|3501711_3502764_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AYA41745.1|3502769_3504065_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
AYA41746.1|3504048_3504603_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
AYA41747.1|3504605_3505958_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 24
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	3517843	3567988	4288892	transposase	Bacillus_phage(22.22%)	51	NA	NA
AYA41755.1|3517843_3518794_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	31.3	6.9e-41
AYA41756.1|3518775_3519288_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41757.1|3519256_3519451_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41758.1|3519487_3519802_+|transposase	transposase	transposase	NA	NA	NA	NA
AYA41759.1|3521216_3521627_+|transposase	transposase	transposase	NA	NA	NA	NA
AYA41760.1|3521867_3522878_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA41761.1|3524453_3524954_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41762.1|3525053_3525491_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41763.1|3525548_3525752_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41764.1|3525748_3526006_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41765.1|3525981_3526494_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41766.1|3527815_3528115_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41767.1|3528158_3528728_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41768.1|3529138_3529597_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41769.1|3530065_3531475_+	glutamate--ammonia ligase	NA	NA	NA	NA	NA
AYA41770.1|3531711_3532755_+	nitrogen regulation protein NR(II)	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.7	7.1e-07
AYA41771.1|3532780_3534217_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AYA41772.1|3534252_3534354_+	potassium-transporting ATPase	NA	NA	NA	NA	NA
AYA41773.1|3534580_3535195_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41774.1|3535470_3536844_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYA41775.1|3536846_3537005_-	high mobility group protein Z	NA	NA	NA	NA	NA
AYA41776.1|3537057_3537582_-	Der GTPase-activating protein YihI	NA	NA	NA	NA	NA
AYA41777.1|3537729_3539199_+	glycosyltransferase	NA	NA	NA	NA	NA
AYA41778.1|3539419_3539755_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYA41779.1|3539744_3540077_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AYA41780.1|3540364_3540925_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYA41781.1|3541028_3542510_+	MFS transporter	NA	NA	NA	NA	NA
AYA41782.1|3542557_3542794_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41783.1|3543607_3544087_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
AYA41784.1|3544339_3545083_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYA41785.1|3545084_3545822_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYA41786.1|3545958_3546807_-	amino acid ABC transporter substrate-binding protein	NA	A0A140XBD5	Dickeya_phage	67.6	2.2e-06
AYA41787.1|3546964_3547681_-	phosphate transport system regulator PhoU	NA	NA	NA	NA	NA
AYA41788.1|3547698_3548505_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.4	7.6e-17
AYA41789.1|3548543_3549449_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
AYA41790.1|3549450_3550407_-	phosphate ABC transporter permease PstC	NA	NA	NA	NA	NA
AYA41791.1|3550503_3551544_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A1D7SRJ6	Cyanophage	36.9	8.3e-48
AYA41792.1|3551712_3552741_-	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	25.4	1.2e-09
AYA41793.1|3552737_3553457_-	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	34.2	2.4e-30
AYA41794.1|3553617_3554115_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AYA41795.1|3554373_3556725_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
AYA41796.1|3557130_3557664_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AYA41797.1|3558052_3558277_+	ferrous iron transporter A	NA	NA	NA	NA	NA
AYA42540.1|3558309_3560622_+	Fe(2+) transporter permease subunit FeoB	NA	NA	NA	NA	NA
AYA41798.1|3560637_3560877_+	ferrous iron transporter C	NA	NA	NA	NA	NA
AYA41799.1|3561129_3561825_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	38.6	2.9e-33
AYA41800.1|3562132_3564175_+	oligopeptidase A	NA	NA	NA	NA	NA
AYA41801.1|3564181_3564925_+	16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ	NA	NA	NA	NA	NA
AYA41802.1|3565009_3566353_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AYA41803.1|3566611_3567043_-	universal stress protein UspA	NA	NA	NA	NA	NA
AYA41804.1|3567221_3567988_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	46.8	4.5e-27
>prophage 25
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	3580264	3645112	4288892	protease,transposase,tRNA	Planktothrix_phage(22.22%)	56	NA	NA
AYA41815.1|3580264_3581113_-|protease	rhomboid family intramembrane serine protease GlpG	protease	NA	NA	NA	NA
AYA41816.1|3581195_3581519_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA	NA
AYA41817.1|3581490_3581673_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41818.1|3581685_3582261_-	iron-sulfur cluster biogenesis protein NfuA	NA	NA	NA	NA	NA
AYA41819.1|3582320_3583004_-	DNA utilization protein GntX	NA	NA	NA	NA	NA
AYA41820.1|3583042_3583819_+	pimeloyl-[acyl-carrier protein] methyl ester esterase	NA	NA	NA	NA	NA
AYA41821.1|3583885_3584329_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AYA41822.1|3585343_3585877_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41823.1|3585941_3586322_-	DUF1090 family protein	NA	NA	NA	NA	NA
AYA41824.1|3586616_3588077_-	insulinase family protein	NA	NA	NA	NA	NA
AYA41825.1|3588218_3589427_-|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	78.6	1.0e-182
AYA41826.1|3589449_3589866_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	64.2	9.9e-45
AYA41827.1|3589943_3590651_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
AYA41828.1|3590896_3591913_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.2e-19
AYA41829.1|3591909_3592890_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.9	1.0e-15
AYA41830.1|3592902_3593820_-	dipeptide ABC transporter permease DppC	NA	NA	NA	NA	NA
AYA41831.1|3593830_3594850_-	dipeptide ABC transporter permease DppB	NA	NA	NA	NA	NA
AYA41832.1|3594991_3596602_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYA41833.1|3597054_3597270_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
AYA41834.1|3597602_3599687_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AYA41835.1|3599696_3600617_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AYA41836.1|3600813_3601377_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AYA41837.1|3603601_3603760_+	putative rSAM-modified RiPP, XyeA family	NA	NA	NA	NA	NA
AYA41838.1|3603820_3604999_+	XyeB family radical SAM/SPASM peptide maturase	NA	NA	NA	NA	NA
AYA41839.1|3605011_3605917_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41840.1|3605891_3607169_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AYA41841.1|3607171_3609277_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	27.7	1.5e-27
AYA42541.1|3609843_3610173_+	YceK/YidQ family lipoprotein	NA	NA	NA	NA	NA
AYA41842.1|3610249_3611539_-	DUF3748 domain-containing protein	NA	NA	NA	NA	NA
AYA41843.1|3611672_3612290_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
AYA41844.1|3612328_3614062_-	NAD-dependent DNA ligase LigB	NA	G3M9X7	Bacillus_virus	23.8	1.7e-21
AYA41845.1|3614368_3614992_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	32.7	1.5e-12
AYA41846.1|3615046_3615322_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AYA41847.1|3615340_3617455_+	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	36.6	2.8e-10
AYA41848.1|3617460_3618168_+|tRNA	tRNA (guanosine(18)-2'-O)-methyltransferase TrmH	tRNA	NA	NA	NA	NA
AYA41849.1|3618192_3620274_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AYA41850.1|3620357_3621572_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AYA41851.1|3621813_3623202_+	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	77.2	5.7e-52
AYA41852.1|3623403_3625176_+	AsmA family protein	NA	NA	NA	NA	NA
AYA41853.1|3625165_3626083_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYA42542.1|3626154_3626592_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
AYA41854.1|3626952_3628776_-	translational GTPase TypA	NA	NA	NA	NA	NA
AYA41855.1|3629383_3629611_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41856.1|3630022_3630481_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41857.1|3630545_3630881_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41858.1|3631399_3631591_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41859.1|3632281_3633292_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AYA42543.1|3635194_3635380_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42544.1|3636186_3636381_-|transposase	transposase	transposase	NA	NA	NA	NA
AYA41860.1|3636470_3637880_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
AYA41861.1|3639368_3640022_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41862.1|3640282_3640831_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYA41863.1|3640934_3641597_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYA41864.1|3641596_3641920_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AYA41865.1|3641977_3642208_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41866.1|3644824_3645112_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 26
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	3706616	3766619	4288892	transposase,tRNA	Stx2-converting_phage(20.0%)	41	NA	NA
AYA41919.1|3706616_3707489_-|transposase	IS630 family transposase	transposase	A0A1V0SCG6	Indivirus	24.1	1.5e-05
AYA41920.1|3707492_3707924_-	hypothetical protein	NA	Q716C2	Shigella_phage	59.8	5.3e-25
AYA41921.1|3707800_3708169_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41922.1|3708308_3708485_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41923.1|3708803_3709646_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AYA41924.1|3709822_3711178_+	glutathione-disulfide reductase	NA	NA	NA	NA	NA
AYA41925.1|3713048_3713825_+	DNA helicase	NA	NA	NA	NA	NA
AYA41926.1|3718902_3719343_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41927.1|3719390_3719651_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41928.1|3721067_3721931_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41929.1|3722182_3722506_+|transposase	transposase	transposase	A0A218MNC9	uncultured_virus	39.6	2.6e-08
AYA41930.1|3722576_3723014_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AYA41931.1|3725520_3726420_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA41932.1|3726554_3727526_-	maltose operon protein MalM	NA	NA	NA	NA	NA
AYA41933.1|3727525_3728782_-	maltoporin	NA	NA	NA	NA	NA
AYA41934.1|3728816_3729926_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	51.7	5.6e-18
AYA42548.1|3730381_3731581_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
AYA41935.1|3731673_3733230_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
AYA41936.1|3733242_3734133_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
AYA41937.1|3734300_3736451_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
AYA41938.1|3736476_3738927_-	maltodextrin phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	41.4	7.0e-13
AYA41939.1|3739345_3742060_+	HTH-type transcriptional regulator MalT	NA	NA	NA	NA	NA
AYA41940.1|3742286_3743537_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.4	3.4e-32
AYA41941.1|3743536_3744598_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AYA41942.1|3744623_3745277_+	HAD family phosphatase	NA	A0A1D8KNV9	Synechococcus_phage	28.3	5.3e-08
AYA41943.1|3745429_3746581_+	MFS transporter	NA	NA	NA	NA	NA
AYA41944.1|3746595_3747195_+	DUF1349 domain-containing protein	NA	NA	NA	NA	NA
AYA41945.1|3747735_3748317_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41946.1|3748616_3750188_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	59.6	8.9e-171
AYA41947.1|3750207_3750555_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	70.5	1.9e-41
AYA41948.1|3750554_3751187_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	43.4	2.3e-16
AYA41949.1|3753865_3754069_+	hypothetical protein	NA	NA	NA	NA	NA
AYA41950.1|3754303_3757201_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.6	2.5e-142
AYA41951.1|3757214_3757694_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
AYA41952.1|3757812_3759321_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	37.2	9.2e-48
AYA41953.1|3759601_3760702_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
AYA41954.1|3760701_3761781_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AYA41955.1|3761874_3763092_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA	NA
AYA41956.1|3763724_3764981_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	41.0	3.1e-73
AYA41957.1|3765134_3765344_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	45.6	8.3e-08
AYA41958.1|3765578_3766619_+|transposase	IS481 family transposase	transposase	A0A077SLK2	Escherichia_phage	80.9	6.8e-167
>prophage 27
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	3775682	3824550	4288892	protease,transposase	Staphylococcus_phage(18.18%)	49	NA	NA
AYA41968.1|3775682_3776444_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.0	1.4e-12
AYA41969.1|3779136_3779388_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA41970.1|3779388_3780687_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AYA41971.1|3781079_3782360_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
AYA41972.1|3782514_3783405_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYA41973.1|3783533_3784226_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AYA41974.1|3784746_3785667_-	DUF91 domain-containing protein	NA	NA	NA	NA	NA
AYA41975.1|3786772_3787660_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA41976.1|3787667_3788402_-	hypothetical protein	NA	A0A2H4PQP4	Staphylococcus_phage	36.4	9.4e-30
AYA41977.1|3788398_3789514_-	anticodon nuclease	NA	NA	NA	NA	NA
AYA41978.1|3789510_3790104_-	type I restriction endonuclease	NA	NA	NA	NA	NA
AYA41979.1|3790098_3790986_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYA41980.1|3790982_3791768_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AYA41981.1|3791760_3794724_-	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	22.0	2.6e-22
AYA41982.1|3794805_3796014_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	48.7	3.0e-49
AYA41983.1|3796542_3796731_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41984.1|3796738_3797665_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
AYA41985.1|3797657_3798191_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41986.1|3798374_3798911_-	ribosome-associated protein	NA	NA	NA	NA	NA
AYA41987.1|3799109_3800453_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AYA41988.1|3800850_3801258_-	HicB family protein	NA	A0A0R6PK80	Moraxella_phage	31.4	1.0e-14
AYA41989.1|3801320_3801509_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
AYA41990.1|3801836_3802028_-	hypothetical protein	NA	NA	NA	NA	NA
AYA41991.1|3802168_3802579_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
AYA41992.1|3802772_3804005_-	alanine racemase	NA	NA	NA	NA	NA
AYA41993.1|3804527_3805697_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AYA41994.1|3806082_3806739_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AYA41995.1|3806829_3807429_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
AYA41996.1|3808510_3809398_-	transcriptional regulator CynR	NA	NA	NA	NA	NA
AYA41997.1|3809528_3809999_+	cyanase	NA	NA	NA	NA	NA
AYA41998.1|3810117_3810390_-	PTS phosphocarrier protein NPr	NA	NA	NA	NA	NA
AYA41999.1|3810438_3811290_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.3	1.1e-05
AYA42549.1|3811328_3811796_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
AYA42000.1|3811910_3812198_-	ribosome hibernation promoting factor	NA	NA	NA	NA	NA
AYA42001.1|3812221_3813655_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
AYA42002.1|3813724_3814450_-	lipopolysaccharide ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	7.1e-22
AYA42003.1|3814456_3815005_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
AYA42004.1|3814985_3815579_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AYA42005.1|3815596_3816160_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	80.0	3.4e-56
AYA42006.1|3816299_3817268_-	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	29.5	8.3e-34
AYA42007.1|3817306_3818293_-	calcium/sodium antiporter	NA	NA	NA	NA	NA
AYA42008.1|3818524_3819328_+	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	33.3	7.4e-20
AYA42550.1|3819338_3820121_+	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA	NA
AYA42009.1|3820125_3820638_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
AYA42010.1|3820671_3821301_+	phospholipid-binding protein MlaC	NA	NA	NA	NA	NA
AYA42011.1|3821302_3821626_+	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA	NA
AYA42012.1|3821784_3822039_+	BolA family transcriptional regulator	NA	NA	NA	NA	NA
AYA42013.1|3822096_3823359_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AYA42551.1|3823485_3824550_-|protease	serine endoprotease DegS	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	30.5	3.7e-11
>prophage 28
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	3830342	3892827	4288892	transposase,head,portal,protease,tail,integrase,capsid,terminase	uncultured_Caudovirales_phage(31.82%)	59	3871004:3871021	3879944:3879961
AYA42021.1|3830342_3830828_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	45.5	1.8e-29
AYA42022.1|3831103_3831613_-	hypothetical protein	NA	NA	NA	NA	NA
AYA42023.1|3831936_3833355_-	glutamate synthase small subunit	NA	NA	NA	NA	NA
AYA42024.1|3833365_3837823_-	glutamate synthase large subunit	NA	NA	NA	NA	NA
AYA42025.1|3838045_3838174_+	clathrin heavy chain protein 1	NA	NA	NA	NA	NA
AYA42026.1|3838506_3840840_+	aerobic respiration two-component sensor histidine kinase ArcB	NA	A0A1V0SGX0	Hokovirus	30.4	4.9e-40
AYA42027.1|3841076_3841730_+	isoprenoid biosynthesis protein ElbB	NA	NA	NA	NA	NA
AYA42028.1|3841734_3842463_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AYA42029.1|3842639_3842792_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
AYA42030.1|3842778_3843426_-	DUF2931 family protein	NA	NA	NA	NA	NA
AYA42031.1|3843435_3844011_-	osmotically-inducible protein OsmY	NA	NA	NA	NA	NA
AYA42032.1|3844022_3844613_-	DnaA initiator-associating protein DiaA	NA	A0A067XQR2	Caulobacter_phage	31.9	1.3e-10
AYA42033.1|3844664_3845057_-	YraN family protein	NA	NA	NA	NA	NA
AYA42552.1|3845043_3846924_-	penicillin-binding protein activator	NA	NA	NA	NA	NA
AYA42034.1|3846987_3847851_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	44.1	1.3e-49
AYA42035.1|3848419_3849668_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	37.2	3.1e-17
AYA42036.1|3849712_3850411_-	pirin family protein	NA	NA	NA	NA	NA
AYA42037.1|3850567_3851461_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYA42038.1|3851549_3851945_-	DoxX family protein	NA	NA	NA	NA	NA
AYA42039.1|3852225_3852507_-	cell division protein FtsH	NA	NA	NA	NA	NA
AYA42040.1|3852499_3852901_-	hypothetical protein	NA	NA	NA	NA	NA
AYA42041.1|3852902_3853208_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AYA42042.1|3853418_3854087_-	DedA family protein	NA	NA	NA	NA	NA
AYA42043.1|3854868_3856113_+	serine/threonine transporter SstT	NA	NA	NA	NA	NA
AYA42044.1|3856167_3858189_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA	NA
AYA42045.1|3858451_3859048_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYA42046.1|3859082_3860018_-	DUF535 domain-containing protein	NA	NA	NA	NA	NA
AYA42047.1|3860538_3861894_-	hypothetical protein	NA	NA	NA	NA	NA
AYA42048.1|3861907_3862087_-	hypothetical protein	NA	NA	NA	NA	NA
AYA42049.1|3862225_3863395_-	MFS transporter	NA	NA	NA	NA	NA
AYA42050.1|3863796_3864063_+	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	68.6	3.4e-30
AYA42051.1|3864312_3864639_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42052.1|3864648_3865791_-|transposase	transposase	transposase	A0A077SLN2	Escherichia_phage	69.0	8.3e-134
AYA42053.1|3865847_3866276_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	50.4	2.4e-25
AYA42054.1|3867754_3868228_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYA42055.1|3868310_3868547_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	48.7	1.9e-13
AYA42056.1|3870559_3870841_+	XRE family transcriptional regulator	NA	A0A088CD40	Shigella_phage	41.4	9.1e-10
3871004:3871021	attL	ATTTTTTATGTCAGGATT	NA	NA	NA	NA
AYA42553.1|3872053_3872470_+|integrase	site-specific integrase	integrase	Q76H30	Enterobacteria_phage	62.8	2.8e-39
AYA42057.1|3872778_3874188_+	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
AYA42058.1|3874363_3874585_+	DNA-binding protein	NA	NA	NA	NA	NA
AYA42059.1|3874734_3875454_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42060.1|3875446_3875857_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42061.1|3875860_3878290_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	39.9	1.6e-147
AYA42062.1|3878563_3879661_-|transposase	ISAs1-like element ISXne3 family transposase	transposase	NA	NA	NA	NA
AYA42063.1|3880138_3880618_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
3879944:3879961	attR	ATTTTTTATGTCAGGATT	NA	NA	NA	NA
AYA42064.1|3880614_3881031_-	hypothetical protein	NA	NA	NA	NA	NA
AYA42065.1|3881023_3881710_-	hypothetical protein	NA	NA	NA	NA	NA
AYA42066.1|3882128_3883280_+|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	69.3	1.2e-148
AYA42067.1|3883324_3883873_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	74.2	2.8e-63
AYA42068.1|3883872_3885093_+|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	76.6	4.5e-186
AYA42069.1|3885089_3885428_+|head,tail	head-tail adaptor	head,tail	A0A1W6JP44	Morganella_phage	52.7	1.2e-24
AYA42070.1|3885420_3885723_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	63.5	1.1e-29
AYA42071.1|3885722_3886109_+	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	59.3	1.9e-37
AYA42072.1|3886246_3886600_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	80.3	4.8e-48
AYA42073.1|3886596_3888258_+|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	79.0	1.2e-266
AYA42074.1|3888443_3888965_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42075.1|3889315_3889579_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	66.2	5.0e-18
AYA42076.1|3890142_3890922_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYA42077.1|3890976_3892827_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	35.2	3.2e-34
>prophage 29
CP032329	Xenorhabdus nematophila strain YL001 chromosome, complete genome	4288892	3984973	4037123	4288892	head,portal,protease,tail,capsid,terminase,tRNA	uncultured_Caudovirales_phage(58.33%)	46	NA	NA
AYA42145.1|3984973_3985726_+|tRNA	tRNA pseudouridine(65) synthase TruC	tRNA	NA	NA	NA	NA
AYA42146.1|3985761_3986208_+	flavodoxin	NA	NA	NA	NA	NA
AYA42147.1|3986306_3986693_-	DUF3461 family protein	NA	NA	NA	NA	NA
AYA42148.1|3986888_3987074_+	hypothetical protein	NA	NA	NA	NA	NA
AYA42149.1|3987852_3988302_-	hypothetical protein	NA	NA	NA	NA	NA
AYA42150.1|3988610_3989012_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYA42151.1|3989089_3989914_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AYA42152.1|3989954_3992609_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA	NA
AYA42153.1|3992773_3993571_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AYA42154.1|3993948_3994674_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AYA42155.1|3994894_3995752_+	elongation factor Ts	NA	NA	NA	NA	NA
AYA42156.1|3995891_3996620_+	UMP kinase	NA	NA	NA	NA	NA
AYA42157.1|3996795_3997353_+	ribosome recycling factor	NA	NA	NA	NA	NA
AYA42158.1|3997509_3998706_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AYA42159.1|3998969_3999725_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	40.7	9.3e-25
AYA42160.1|3999734_4000598_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AYA42161.1|4000607_4001960_+|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
AYA42162.1|4001994_4004385_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AYA42163.1|4004490_4004988_+	molecular chaperone Skp	NA	NA	NA	NA	NA
AYA42164.1|4004992_4006021_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AYA42165.1|4006234_4006687_+	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	NA	NA	NA	NA	NA
AYA42166.1|4006690_4007488_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AYA42167.1|4007492_4008677_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AYA42168.1|4008673_4009267_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	42.2	4.1e-28
AYA42169.1|4009282_4012765_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	37.4	3.6e-204
AYA42170.1|4012777_4013737_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
AYA42171.1|4014139_4015471_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AYA42172.1|4015567_4015831_-	Rho-binding antiterminator	NA	NA	NA	NA	NA
AYA42559.1|4016293_4016995_+	copper homeostasis/adhesion lipoprotein NlpE	NA	NA	NA	NA	NA
AYA42173.1|4017068_4018790_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
AYA42560.1|4018905_4019613_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
AYA42174.1|4019630_4020026_-	Rcs stress response system protein RcsF	NA	NA	NA	NA	NA
AYA42175.1|4020181_4020997_-	MetQ/NlpA family lipoprotein	NA	NA	NA	NA	NA
AYA42176.1|4021124_4021778_-	D-methionine ABC transporter permease MetI	NA	NA	NA	NA	NA
AYA42177.1|4021770_4022802_-	D-methionine ABC transporter, ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	4.8e-32
AYA42178.1|4022981_4023548_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AYA42179.1|4029299_4030241_+	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
AYA42180.1|4030581_4030839_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	61.8	8.3e-18
AYA42181.1|4031117_4032779_-|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	78.3	8.6e-265
AYA42182.1|4032790_4033150_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	73.5	2.5e-44
AYA42183.1|4033243_4033432_-	hypothetical protein	NA	NA	NA	NA	NA
AYA42184.1|4033428_4033863_-	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	61.5	3.2e-46
AYA42185.1|4033863_4034160_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	63.4	5.4e-29
AYA42186.1|4034156_4035377_-|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	75.7	2.6e-186
AYA42187.1|4035379_4035928_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	70.0	2.7e-66
AYA42188.1|4035971_4037123_-|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	68.7	7.3e-146
