assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003586065.1_EcRM9872	CP028379	Escherichia coli O145 str. RM9872 chromosome, complete genome	1	2922305-2922436	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	CTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA	NA|950aa|up_9|CP028379.1_2899339_2902189_-	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|259aa|up_8|CP028379.1_2902463_2903240_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|234aa|up_7|CP028379.1_2903244_2903946_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|279aa|up_6|CP028379.1_2904056_2904893_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|208aa|up_5|CP028379.1_2909431_2910055_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|CP028379.1_2910051_2911740_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|CP028379.1_2911888_2914516_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|CP028379.1_2914662_2915385_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|CP028379.1_2915525_2919278_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|CP028379.1_2919973_2922259_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|CP028379.1_2922492_2923623_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|CP028379.1_2923622_2923877_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|CP028379.1_2923930_2924581_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|397aa|down_3|CP028379.1_2924661_2925852_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|293aa|down_4|CP028379.1_2926016_2926895_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|360aa|down_5|CP028379.1_2926939_2928019_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_6|CP028379.1_2928023_2929382_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_7|CP028379.1_2929654_2931283_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_8|CP028379.1_2931272_2932532_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_9|CP028379.1_2932528_2933719_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
GCA_003586065.1_EcRM9872	CP028379	Escherichia coli O145 str. RM9872 chromosome, complete genome	2	3003637-3003762	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	TGTCGGATGCGGCGTAAACGCCTTATCCGACCTAC	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA|74aa|down_9|CP028379.1_3012861_3013083_+	NA|298aa|up_9|CP028379.1_2994417_2995311_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|297aa|up_8|CP028379.1_2995358_2996249_-	PRK09857, PRK09857, recombination-promoting nuclease RpnA	NA|258aa|up_7|CP028379.1_2996445_2997219_-	PRK10619, PRK10619, histidine ABC transporter ATP-binding protein HisP	NA|239aa|up_6|CP028379.1_2997226_2997943_-	PRK15069, PRK15069, histidine ABC transporter permease HisM	NA|229aa|up_5|CP028379.1_2997939_2998626_-	PRK15135, PRK15135, histidine ABC transporter permease HisQ	NA|261aa|up_4|CP028379.1_2998715_2999498_-	PRK15437, PRK15437, histidine ABC transporter substrate-binding protein HisJ; Provisional	NA|261aa|up_3|CP028379.1_2999718_3000501_-	PRK15010, PRK15010, lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT	NA|190aa|up_2|CP028379.1_3000765_3001335_-	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|506aa|up_1|CP028379.1_3001429_3002947_-	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|163aa|up_0|CP028379.1_3002983_3003472_-	PRK10845, PRK10845, colicin V production protein; Provisional	NA|221aa|down_0|CP028379.1_3003821_3004484_-	PRK11633, PRK11633, cell division protein DedD; Provisional	NA|423aa|down_1|CP028379.1_3004473_3005742_-	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional	NA|305aa|down_2|CP028379.1_3005811_3006726_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|220aa|down_3|CP028379.1_3006881_3007541_-	PRK10847, PRK10847, DedA family protein	NA|271aa|down_4|CP028379.1_3007623_3008436_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|338aa|down_5|CP028379.1_3008435_3009449_-	PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional	NA|379aa|down_6|CP028379.1_3009514_3010651_-	PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional	NA|332aa|down_7|CP028379.1_3010749_3011745_+	PRK10715, flk, flagella biosynthesis regulator Flk	NA|393aa|down_8|CP028379.1_3011741_3012920_-	PRK12382, PRK12382, putative transporter; Provisional	NA|74aa|down_9|CP028379.1_3012861_3013083_+	NA
GCA_003586065.1_EcRM9872	CP028379	Escherichia coli O145 str. RM9872 chromosome, complete genome	4	3427904-3428057	1,4	PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Unclear	CCCGGTTTATCCCCGCTGGCGCGGGGAACTCT,CGGTTTATCCCCGCTGGCGCGAGGAACTCT	32,30	0	0	NA	NA	I-E:I-E	2,2	2	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA	NA|254aa|up_9|CP028379.1_3419718_3420480_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP028379.1_3420460_3421510_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP028379.1_3421506_3421986_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP028379.1_3421985_3422696_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP028379.1_3422714_3423026_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP028379.1_3423219_3423543_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP028379.1_3423592_3424198_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP028379.1_3424197_3425625_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP028379.1_3425626_3426535_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP028379.1_3426786_3427824_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|CP028379.1_3428161_3428446_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|CP028379.1_3428447_3429365_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|CP028379.1_3429380_3429980_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|149aa|down_3|CP028379.1_3429966_3430413_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	NA|405aa|down_4|CP028379.1_3430461_3431675_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas3|889aa|down_5|CP028379.1_3432760_3435427_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_6|CP028379.1_3435785_3436520_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_7|CP028379.1_3436593_3438306_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_8|CP028379.1_3438305_3440105_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|down_9|CP028379.1_3440420_3440786_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCA_003586065.1_EcRM9872	CP028379	Escherichia coli O145 str. RM9872 chromosome, complete genome	5	3452156-3452428	5,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Unclear	GCGGTTTATCCCCGCTGGCGCGGGGAACTC,GCGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACT	30,30,28	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA	NA|424aa|up_9|CP028379.1_3440863_3442135_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|CP028379.1_3442125_3442386_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|CP028379.1_3442402_3442978_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|CP028379.1_3443124_3443985_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|CP028379.1_3443981_3444761_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|CP028379.1_3444738_3446076_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|CP028379.1_3446169_3447624_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|CP028379.1_3447693_3448479_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|CP028379.1_3448797_3450075_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|CP028379.1_3450101_3451580_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP028379.1_3452766_3453438_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|CP028379.1_3453610_3454213_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|308aa|down_2|CP028379.1_3454196_3455120_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|CP028379.1_3455134_3456283_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|298aa|down_4|CP028379.1_3456288_3457182_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|CP028379.1_3457241_3458540_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|CP028379.1_3458627_3460265_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|CP028379.1_3460492_3461284_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|CP028379.1_3461354_3461690_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|CP028379.1_3461689_3461938_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCA_003586065.1_EcRM9872	CP028379	Escherichia coli O145 str. RM9872 chromosome, complete genome	6	5194679-5194828	6	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA|556aa|up_6|CP028379.1_5185912_5187580_+,NA|679aa|down_5|CP028379.1_5202606_5204643_+	NA|238aa|up_9|CP028379.1_5183815_5184529_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|CP028379.1_5184599_5185193_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|CP028379.1_5185337_5185790_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|556aa|up_6|CP028379.1_5185912_5187580_+	NA	NA|335aa|up_5|CP028379.1_5187636_5188641_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|CP028379.1_5188802_5189219_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|CP028379.1_5189264_5189768_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|CP028379.1_5189960_5191157_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|CP028379.1_5191212_5194068_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|CP028379.1_5194067_5194511_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|CP028379.1_5194864_5196376_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|CP028379.1_5196642_5197743_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|CP028379.1_5197742_5198825_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|CP028379.1_5198985_5200488_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|CP028379.1_5200617_5201637_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|679aa|down_5|CP028379.1_5202606_5204643_+	NA	NA|60aa|down_6|CP028379.1_5205041_5205221_-	COG4930, COG4930, Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]	NA|291aa|down_7|CP028379.1_5205265_5206138_-	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms]	NA|109aa|down_8|CP028379.1_5206124_5206451_-	COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|down_9|CP028379.1_5206677_5207781_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]
