The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP032444	Salmonella enterica subsp. enterica serovar Fresno strain USMARC-69835 chromosome, complete genome	4732430	1457447	1502253	4732430	tail,terminase,protease,coat,portal,lysis	Salmonella_phage(62.5%)	70	NA	NA
AYB87554.1|1457447_1458386_+|protease	omptin family outer membrane protease PgtE	protease	NA	NA	NA	NA
AYB87555.1|1458407_1458638_-	hypothetical protein	NA	C6ZR23	Salmonella_phage	74.0	5.2e-11
AYB87556.1|1458647_1458851_-	hypothetical protein	NA	C6ZR24	Salmonella_phage	94.0	1.8e-31
AYB87557.1|1458947_1459298_-	hypothetical protein	NA	I6R980	Salmonella_phage	99.1	7.0e-60
AYB87558.1|1459900_1460425_-	DUF550 domain-containing protein	NA	A0A220NQU1	Salmonella_phage	73.0	3.6e-52
AYB87559.1|1460435_1461755_-	phosphoadenosine phosphosulfate reductase	NA	Q8W6P3	Burkholderia_virus	32.7	1.7e-42
AYB87560.1|1461756_1462548_-	ead/Ea22-like family protein	NA	I6RSM9	Salmonella_phage	76.2	4.3e-81
AYB87561.1|1462657_1463035_-	Eae protein	NA	I6R9B7	Salmonella_phage	99.2	2.5e-63
AYB87562.1|1463031_1463202_-	DUF2737 family protein	NA	I6S642	Salmonella_phage	100.0	6.1e-25
AYB87563.1|1463212_1463506_-	DUF2856 family protein	NA	E7C9P8	Salmonella_phage	95.9	3.0e-48
AYB87564.1|1463552_1463837_-	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
AYB87565.1|1463836_1464544_-	recombinase	NA	K7PKU3	Enterobacteria_phage	86.4	1.3e-116
AYB87566.1|1464551_1464740_-	hypothetical protein	NA	C6ZR38	Salmonella_phage	82.3	1.7e-23
AYB87567.1|1464827_1465022_-	hypothetical protein	NA	NA	NA	NA	NA
AYB87568.1|1465006_1465141_-	hypothetical protein	NA	K7PHK2	Enterobacteria_phage	78.0	2.1e-09
AYB87569.1|1465226_1465481_-	hypothetical protein	NA	NA	NA	NA	NA
AYB87570.1|1465631_1465832_-	hypothetical protein	NA	A0A2H4FQS9	Salmonella_phage	98.5	2.7e-32
AYB90632.1|1465900_1466938_-	hypothetical protein	NA	A0A2H4FRY7	Salmonella_phage	64.1	4.3e-73
AYB87571.1|1467021_1467216_-	restriction endonuclease	NA	E7C9Q6	Salmonella_phage	98.4	9.3e-30
AYB90631.1|1467430_1468018_+	superinfection exclusion protein B	NA	A0A0M4R594	Salmonella_phage	99.0	2.8e-85
AYB87572.1|1468030_1468393_-	antitermination protein	NA	C6ZR44	Salmonella_phage	95.0	1.2e-57
AYB87573.1|1468343_1468544_-	hypothetical protein	NA	NA	NA	NA	NA
AYB87574.1|1468724_1468934_+	fumarate hydratase FumD	NA	I6R0R9	Salmonella_phage	92.8	1.9e-28
AYB87575.1|1468972_1469218_-	hypothetical protein	NA	NA	NA	NA	NA
AYB87576.1|1469308_1469545_-	hypothetical protein	NA	NA	NA	NA	NA
AYB90633.1|1469572_1470280_-	helix-turn-helix transcriptional regulator	NA	A0A0N7C1P9	Escherichia_phage	81.7	1.2e-106
AYB87577.1|1470390_1470615_+	helix-turn-helix domain-containing protein	NA	A0A0N7C1T6	Escherichia_phage	89.0	6.8e-32
AYB87578.1|1470744_1471023_+	hypothetical protein	NA	A0A220NRS4	Escherichia_phage	91.3	6.4e-40
AYB87579.1|1471057_1471204_+	DUF2740 domain-containing protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
AYB87580.1|1471196_1472096_+	DNA replication protein	NA	A0A220NQX5	Salmonella_phage	99.0	1.7e-153
AYB87581.1|1472070_1473522_+	helicase DnaB	NA	Q7Y2K5	Escherichia_phage	99.0	1.5e-273
AYB87582.1|1473596_1473869_+	DUF4752 family protein	NA	A0A220NQX8	Salmonella_phage	98.9	1.0e-42
AYB87583.1|1473878_1474088_+	hypothetical protein	NA	A0A1R3Y5S8	Salmonella_virus	95.7	5.9e-30
AYB87584.1|1474099_1474429_+	hypothetical protein	NA	K7PHN9	Enterobacterial_phage	67.7	4.6e-37
AYB87585.1|1474385_1474832_+	recombination protein NinB	NA	I6R0N7	Salmonella_phage	97.3	7.8e-80
AYB87586.1|1474828_1475005_+	NinE family protein	NA	I6RSI9	Salmonella_phage	98.3	1.5e-26
AYB87587.1|1475001_1475178_+	NinF family protein	NA	A0A0M4S6T3	Salmonella_phage	94.8	1.8e-27
AYB87588.1|1475140_1475437_+	hypothetical protein	NA	A0A0M3ULJ7	Salmonella_phage	98.9	7.5e-47
AYB87589.1|1475433_1475829_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0M4REJ2	Salmonella_phage	97.7	2.2e-70
AYB87590.1|1475825_1476029_+	protein ninH	NA	Q5G8R8	Enterobacteria_phage	100.0	7.2e-33
AYB87591.1|1476009_1476189_+	hypothetical protein	NA	A0A0M4QWY9	Salmonella_phage	96.6	1.3e-22
AYB87592.1|1476185_1476959_+	antitermination protein	NA	Q76H66	Enterobacteria_phage	98.4	9.9e-131
AYB87593.1|1477495_1477699_+	hypothetical protein	NA	O80287	Bacteriophage	97.0	1.2e-32
AYB90634.1|1477676_1478174_+	lysozyme	NA	I6S1V9	Salmonella_phage	98.2	7.1e-90
AYB87594.1|1478262_1478700_+|lysis	lysis protein	lysis	A0A088CQ67	Enterobacteria_phage	93.1	5.1e-68
AYB87595.1|1478901_1479423_+	DNA-binding protein	NA	K7P7K9	Enterobacteria_phage	98.8	5.5e-93
AYB87596.1|1479789_1480032_+	DUF2560 family protein	NA	A0A1R3Y5V5	Salmonella_virus	98.8	3.7e-36
AYB87597.1|1480033_1480213_+	hypothetical protein	NA	Q9AZ02	Salmonella_phage	94.9	1.6e-23
AYB87598.1|1480236_1480725_+	DNA-packaging protein	NA	A8CGG1	Salmonella_phage	100.0	2.9e-88
AYB87599.1|1480702_1482202_+|terminase	terminase	terminase	A0A2H4FUR5	Salmonella_phage	100.0	4.8e-307
AYB87600.1|1482201_1484379_+|portal	portal protein	portal	I6R968	Salmonella_phage	98.8	0.0e+00
AYB87601.1|1484392_1485304_+	scaffolding protein	NA	A0A1R3Y5R6	Salmonella_virus	99.7	2.4e-160
AYB87602.1|1485303_1486596_+|coat	coat protein	coat	Q76H21	Enterobacteria_phage	100.0	1.1e-243
AYB87603.1|1486636_1487197_+	hypothetical protein	NA	C6ZR11	Salmonella_phage	99.5	3.7e-103
AYB87604.1|1487180_1487681_+	hypothetical protein	NA	I6RSF6	Salmonella_phage	100.0	2.5e-90
AYB87605.1|1487640_1489059_+	hypothetical protein	NA	A0A075B8I2	Enterobacteria_phage	98.3	3.0e-274
AYB87606.1|1489062_1489701_+|tail	phage tail protein	tail	A0A088CPT1	Enterobacteria_phage	96.7	7.2e-87
AYB87607.1|1489700_1490156_+	DUF2824 family protein	NA	A0A192Y6V9	Salmonella_phage	98.7	4.4e-86
AYB87608.1|1490158_1490848_+	DNA transfer protein	NA	B9UDK9	Salmonella_phage	91.3	8.9e-91
AYB90635.1|1490890_1492228_+	DNA transfer protein	NA	A0A1R3Y5Q4	Salmonella_virus	97.3	5.5e-238
AYB87609.1|1492227_1494351_+	DNA transfer protein	NA	B9UDL1	Salmonella_phage	99.7	0.0e+00
AYB87610.1|1494351_1494675_-	hypothetical protein	NA	B9UDL2	Salmonella_phage	100.0	1.1e-14
AYB87611.1|1494793_1495213_+	hypothetical protein	NA	B9UDL3	Salmonella_phage	100.0	1.3e-73
AYB87612.1|1495229_1495481_-	Arc family DNA-binding protein	NA	B9UDL4	Salmonella_phage	100.0	3.4e-40
AYB87613.1|1495571_1495733_+	Arc family DNA-binding protein	NA	B9UDL5	Salmonella_phage	100.0	7.0e-23
AYB87614.1|1495801_1496704_+	phage antirepressor Ant	NA	Q0H8C7	Salmonella_phage	100.0	2.5e-173
AYB87615.1|1496804_1498634_+	hypothetical protein	NA	Q0H8C6	Salmonella_phage	67.1	1.9e-241
AYB87616.1|1498643_1499696_-	acyltransferase	NA	A9YX16	Burkholderia_phage	30.4	4.8e-27
AYB87617.1|1499831_1500998_-	DUF4102 domain-containing protein	NA	I6R0M2	Salmonella_phage	98.7	1.9e-226
AYB87618.1|1501311_1502253_-	hypothetical protein	NA	E7DYY8	Enterobacteria_phage	88.2	1.4e-147
>prophage 2
CP032444	Salmonella enterica subsp. enterica serovar Fresno strain USMARC-69835 chromosome, complete genome	4732430	1738467	1747638	4732430	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYB87831.1|1738467_1739415_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
AYB87832.1|1739398_1740130_+	ABC transporter permease	NA	NA	NA	NA	NA
AYB87833.1|1740110_1740218_-	protein YohO	NA	NA	NA	NA	NA
AYB87834.1|1740277_1741009_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYB87835.1|1741231_1742917_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
AYB87836.1|1742913_1743633_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AYB87837.1|1743679_1744147_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYB87838.1|1744203_1744734_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
AYB87839.1|1744905_1745364_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYB87840.1|1745604_1747638_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 3
CP032444	Salmonella enterica subsp. enterica serovar Fresno strain USMARC-69835 chromosome, complete genome	4732430	1826453	1836960	4732430		Enterobacteria_phage(37.5%)	10	NA	NA
AYB87908.1|1826453_1827857_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
AYB87909.1|1828034_1828928_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AYB87910.1|1829304_1830390_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
AYB87911.1|1830389_1831289_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
AYB87912.1|1831336_1832215_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
AYB87913.1|1832215_1832767_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	1.3e-52
AYB87914.1|1832772_1833747_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AYB87915.1|1833762_1834536_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYB87916.1|1834540_1835620_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	2.3e-16
AYB87917.1|1835646_1836960_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
>prophage 4
CP032444	Salmonella enterica subsp. enterica serovar Fresno strain USMARC-69835 chromosome, complete genome	4732430	4353008	4397580	4732430	tail,tRNA,plate	Burkholderia_phage(38.1%)	47	NA	NA
AYB90245.1|4353008_4354007_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AYB90246.1|4354094_4355405_-	conjugal transfer protein	NA	NA	NA	NA	NA
AYB90247.1|4355651_4356167_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
AYB90248.1|4356266_4356476_-	CsbD family protein	NA	NA	NA	NA	NA
AYB90748.1|4356497_4356611_-	hypothetical protein	NA	NA	NA	NA	NA
AYB90249.1|4356607_4357933_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
AYB90250.1|4358111_4358720_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
AYB90251.1|4358828_4359197_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AYB90252.1|4359367_4361788_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
AYB90253.1|4361886_4362759_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
AYB90254.1|4362772_4363270_-	chorismate lyase	NA	NA	NA	NA	NA
AYB90255.1|4363450_4364368_-	maltose operon protein MalM	NA	NA	NA	NA	NA
AYB90256.1|4364531_4365890_-	maltoporin	NA	NA	NA	NA	NA
AYB90257.1|4365978_4367088_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
AYB90258.1|4367449_4368640_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
AYB90259.1|4368771_4370316_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
AYB90260.1|4370330_4371221_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
AYB90261.1|4371386_4371797_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
AYB90262.1|4371939_4374036_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
AYB90263.1|4374035_4374773_-	hypothetical protein	NA	NA	NA	NA	NA
AYB90264.1|4374769_4375408_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
AYB90265.1|4375471_4375714_-	outer membrane protein	NA	NA	NA	NA	NA
AYB90266.1|4376157_4377807_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYB90267.1|4378194_4379544_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
AYB90268.1|4379678_4380026_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
AYB90269.1|4380602_4380890_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
AYB90270.1|4380892_4381498_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.4	9.3e-60
AYB90271.1|4381510_4381825_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
AYB90272.1|4381983_4382439_+	hypothetical protein	NA	NA	NA	NA	NA
AYB90273.1|4382435_4382633_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
AYB90274.1|4382622_4384050_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.5	2.0e-193
AYB90275.1|4384049_4384574_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
AYB90276.1|4384625_4384943_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AYB90277.1|4384902_4385031_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AYB90278.1|4385127_4387482_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	31.0	3.6e-67
AYB90279.1|4387481_4388435_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
AYB90280.1|4388434_4388644_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
AYB90281.1|4388631_4389675_+	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.6	4.2e-76
AYB90282.1|4389684_4390407_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
AYB90283.1|4390415_4390658_+	hypothetical protein	NA	NA	NA	NA	NA
AYB90284.1|4390733_4391096_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
AYB90285.1|4391092_4392022_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
AYB90286.1|4392021_4393569_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
AYB90287.1|4393732_4394092_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
AYB90288.1|4394082_4395198_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.0	3.4e-100
AYB90289.1|4395190_4395823_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
AYB90290.1|4395825_4397580_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.7	8.5e-53
