The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP030827	Neorhizobium sp. NCHU2750 chromosome, complete genome	4319396	192329	205305	4319396	transposase,integrase	Sulfitobacter_phage(33.33%)	11	185125:185139	198353:198367
185125:185139	attL	GCCGAAAGTCACCTG	NA	NA	NA	NA
AYC99574.1|192329_193790_+|integrase	integrase	integrase	A0A088F800	Sulfitobacter_phage	32.9	2.0e-39
AYC99575.1|194255_194507_+	ATP-binding protein	NA	NA	NA	NA	NA
AYC99576.1|196831_197668_+|transposase	transposase	transposase	NA	NA	NA	NA
AYC99577.1|197854_198229_+	hypothetical protein	NA	NA	NA	NA	NA
AYC99578.1|198235_199087_+	hypothetical protein	NA	NA	NA	NA	NA
198353:198367	attR	GCCGAAAGTCACCTG	NA	NA	NA	NA
AYC99579.1|199553_199904_+|transposase	transposase	transposase	NA	NA	NA	NA
AYC99580.1|201600_201897_+	hypothetical protein	NA	NA	NA	NA	NA
AYC99581.1|201839_202712_-|transposase	transposase	transposase	S5WIU1	Leptospira_phage	41.2	1.2e-47
AYC99582.1|202758_203364_-|transposase	transposase	transposase	NA	NA	NA	NA
AYC99583.1|203360_204947_-	hypothetical protein	NA	A0A218MNE7	uncultured_virus	34.8	1.0e-49
AYC99584.1|204981_205305_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP030827	Neorhizobium sp. NCHU2750 chromosome, complete genome	4319396	624052	632971	4319396	integrase	Sinorhizobium_phage(25.0%)	14	613975:613988	632177:632190
613975:613988	attL	GCATGCCAACAAGC	NA	NA	NA	NA
AYC99977.1|624052_624712_-	capsular polysaccharide ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.4	1.4e-05
AYC99978.1|624708_625620_-	capsular polysaccharide ABC transporter permease	NA	NA	NA	NA	NA
AYC99979.1|625682_626045_-	hypothetical protein	NA	NA	NA	NA	NA
AYC99980.1|626494_627346_-|integrase	integrase	integrase	A0A068CCA6	Rhizobium_phage	71.9	5.1e-120
AYC99981.1|627363_627732_-	hypothetical protein	NA	A0A291AUQ5	Sinorhizobium_phage	69.2	3.3e-36
AYC99982.1|627734_628013_-	hypothetical protein	NA	A0A0U4B0M9	Pseudomonas_phage	47.5	8.8e-05
AYC99983.1|628012_628660_-	hypothetical protein	NA	NA	NA	NA	NA
AYC99984.1|628699_629221_-	hypothetical protein	NA	NA	NA	NA	NA
AYC99985.1|629213_629684_-	hypothetical protein	NA	A0A223VZY2	Agrobacterium_phage	69.5	4.9e-32
AYC99986.1|629676_630429_-	hypothetical protein	NA	Q8W6F8	Sinorhizobium_phage	51.4	1.5e-14
AYC99987.1|630421_631393_-	hypothetical protein	NA	NA	NA	NA	NA
AYC99988.1|631389_631980_-	hypothetical protein	NA	A0A1X9SGP3	Bradyrhizobium_phage	45.4	6.0e-19
AYC99989.1|631976_632252_-	hypothetical protein	NA	NA	NA	NA	NA
632177:632190	attR	GCTTGTTGGCATGC	NA	NA	NA	NA
AYC99990.1|632248_632971_-	site-specific DNA-methyltransferase	NA	A6N3B6	Burkholderia_virus	60.5	2.1e-74
>prophage 3
CP030827	Neorhizobium sp. NCHU2750 chromosome, complete genome	4319396	645343	667155	4319396	tail,head,terminase,capsid	Rhizobium_phage(47.06%)	26	NA	NA
AYD00013.1|645343_645652_+	HNH endonuclease	NA	I3ULZ4	Rhodobacter_phage	51.0	1.5e-18
AYD00014.1|645651_645822_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00015.1|645822_646110_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00016.1|646340_646823_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00017.1|646819_648574_+|terminase	terminase	terminase	Q3HQS7	Burkholderia_phage	51.2	1.0e-162
AYD00018.1|648586_650551_+|capsid	phage capsid protein	capsid	S4TNE3	Salmonella_phage	44.6	3.9e-139
AYD00019.1|650617_650908_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00020.1|650907_652266_+	poly(3-hydroxybutyrate) depolymerase	NA	F8TVA0	EBPR_siphovirus	59.7	1.9e-140
AYD00021.1|652262_653165_+	hypothetical protein	NA	S4TNN1	Salmonella_phage	68.4	1.7e-17
AYD00022.1|653164_653479_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00023.1|653475_653823_+|head,tail	phage head-tail adaptor	head,tail	B4UTP9	Rhizobium_phage	44.0	6.2e-08
AYD00024.1|653819_654218_+	hypothetical protein	NA	B4UTQ1	Rhizobium_phage	36.3	3.3e-13
AYD00025.1|654220_654394_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00026.1|654393_654858_+	HK97 family phage protein	NA	NA	NA	NA	NA
AYD00027.1|654884_655328_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00028.1|655327_655681_+	hypothetical protein	NA	B4UTQ4	Rhizobium_phage	45.5	1.2e-14
AYD00029.1|656263_658639_+	hypothetical protein	NA	A0A2H4GY14	Pseudomonas_phage	37.6	4.0e-29
AYD00030.1|658635_659358_+	hypothetical protein	NA	B4UTQ7	Rhizobium_phage	58.1	2.8e-71
AYD00031.1|659358_659937_+	hypothetical protein	NA	B4UTQ9	Rhizobium_phage	55.3	1.5e-54
AYD00032.1|659921_660344_+	hypothetical protein	NA	B4UTR0	Rhizobium_phage	52.1	2.1e-34
AYD00033.1|660344_662429_+	hypothetical protein	NA	B4UTR1	Rhizobium_phage	61.2	3.0e-246
AYD00034.1|662493_663270_+	hypothetical protein	NA	B4UTR2	Rhizobium_phage	56.6	7.0e-52
AYD00035.1|663275_665408_+	hypothetical protein	NA	U5PSK6	Bacillus_phage	35.3	8.5e-31
AYD00036.1|665313_666159_-	hypothetical protein	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	29.5	7.8e-12
AYD00037.1|666254_666593_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00038.1|666561_667155_+	lysozyme	NA	A0A0K1LL70	Rhodobacter_phage	38.3	5.6e-25
>prophage 4
CP030827	Neorhizobium sp. NCHU2750 chromosome, complete genome	4319396	839829	864700	4319396	head,protease,capsid,portal,tail	Paracoccus_phage(22.22%)	28	NA	NA
AYD00224.1|839829_841038_+|portal	portal protein	portal	W8ECU7	Geobacillus_phage	39.2	1.8e-62
AYD00225.1|841096_841405_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AYD00226.1|841404_841713_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00227.1|841941_842268_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00228.1|842344_842977_+	primosomal replication protein N	NA	A0A0U2BX10	Paracoccus_phage	45.2	5.8e-28
AYD00229.1|842973_844269_+|capsid	capsid protein	capsid	Q3HQT0	Burkholderia_phage	42.3	7.6e-83
AYD00230.1|844484_845054_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00231.1|845053_845386_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AYD00232.1|845382_845793_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00233.1|845773_847051_-	major facilitator transporter	NA	NA	NA	NA	NA
AYD00234.1|847191_847599_+|tail	tail protein	tail	NA	NA	NA	NA
AYD00235.1|847598_847961_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00236.1|848059_848221_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00237.1|848343_848880_+|tail	tail protein	tail	G9JXH3	Shigella_phage	35.9	3.0e-09
AYD00238.1|848944_849586_+	glycoside hydrolase family 24	NA	A0A0B5A2K3	Paracoccus_phage	47.8	3.3e-47
AYD00239.1|849599_850475_+	beta tubulin, autoregulation binding site	NA	A0A1V0DY93	Dinoroseobacter_phage	36.9	4.1e-48
AYD00240.1|850471_850924_+	peptidase P60	NA	A0A1V0DYB6	Dinoroseobacter_phage	43.0	4.9e-29
AYD00241.1|851265_855087_+	hypothetical protein	NA	A0A0K1Y6G6	Rhodobacter_phage	37.6	2.7e-213
AYD00242.1|855105_855348_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00243.1|855455_855719_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00244.1|855768_856440_+	two-component system response regulator	NA	NA	NA	NA	NA
AYD00245.1|856468_857866_+	histidine kinase	NA	NA	NA	NA	NA
AYD00246.1|858096_858561_+	membrane protein	NA	NA	NA	NA	NA
AYD00247.1|858734_859994_+	cytochrome c biogenesis protein	NA	NA	NA	NA	NA
AYD00248.1|859990_860515_+	cytochrome c biogenesis protein	NA	NA	NA	NA	NA
AYD00249.1|860511_862500_+	cytochrome c biogenesis protein	NA	NA	NA	NA	NA
AYD00250.1|862496_862964_+	cytochrome c biogenesis protein	NA	NA	NA	NA	NA
AYD00251.1|863131_864700_+|protease	serine protease Do	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.0	4.2e-27
>prophage 5
CP030827	Neorhizobium sp. NCHU2750 chromosome, complete genome	4319396	1153673	1219456	4319396	transposase,protease,holin,integrase	Bacillus_virus(14.29%)	47	1148507:1148521	1231250:1231264
1148507:1148521	attL	CTTCGTCGATATCTC	NA	NA	NA	NA
AYD00534.1|1153673_1154111_-|holin	holin-like protein	holin	NA	NA	NA	NA
AYD00535.1|1154226_1155492_-	cytochrome P450	NA	NA	NA	NA	NA
AYD00536.1|1155548_1157303_-	gamma-glutamyltranspeptidase	NA	Q5GF27	Diachasmimorpha_longicaudata_entomopoxvirus	23.9	4.1e-07
AYD00537.1|1157405_1158653_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	31.0	1.4e-12
AYD00538.1|1159019_1159652_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	61.8	2.9e-64
AYD00539.1|1159931_1161209_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	G3M9Z9	Bacillus_virus	59.6	4.9e-135
AYD00540.1|1161633_1164054_+|protease	ATP-dependent Lon protease	protease	A0A0R6PGP8	Moraxella_phage	49.7	3.2e-204
AYD00541.1|1164245_1164521_+	DNA-binding protein HU-beta	NA	A0A172Q061	Acinetobacter_phage	34.4	1.6e-06
AYD00542.1|1164883_1167076_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00543.1|1167271_1168507_+	serine/threonine protein phosphatase	NA	NA	NA	NA	NA
AYD00544.1|1168508_1171961_+	RecF/RecN/SMC familyt protein	NA	NA	NA	NA	NA
AYD00545.1|1171937_1172831_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00546.1|1173155_1174334_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYD00547.1|1174511_1181951_+	polyketide synthase	NA	NA	NA	NA	NA
AYD00548.1|1181947_1183375_+	8-amino-7-oxononanoate synthase	NA	V5LQ39	Emiliania_huxleyi_virus	32.6	2.6e-52
AYD00549.1|1183388_1184174_+	follicular variant translocation protein 1	NA	NA	NA	NA	NA
AYD00550.1|1185047_1185218_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00551.1|1185508_1185712_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00552.1|1186999_1187533_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00553.1|1187923_1190113_+	hydroperoxidase	NA	NA	NA	NA	NA
AYD00554.1|1190233_1190380_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00555.1|1191048_1191831_-	serine/threonine protein phosphatase	NA	K4JNE2	Caulobacter_virus	33.9	1.5e-25
AYD00556.1|1191921_1192716_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00557.1|1193238_1193805_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00558.1|1194690_1194900_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00559.1|1195366_1195789_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00560.1|1195874_1197185_-	UDP-glucose 6-dehydrogenase	NA	A0A127AXI2	Bacillus_phage	37.9	1.8e-76
AYD00561.1|1197256_1198684_-	mannose-1-phosphate guanylyltransferase	NA	A0A1V0SH58	Hokovirus	29.9	1.1e-55
AYD00562.1|1198721_1200137_-	phosphomannomutase	NA	NA	NA	NA	NA
AYD00563.1|1200334_1201039_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYD00564.1|1201636_1202014_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00565.1|1202006_1204031_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00566.1|1204031_1205078_+	nucleotidyltransferase	NA	NA	NA	NA	NA
AYD00567.1|1205338_1206535_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYD00568.1|1206714_1207320_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00569.1|1207635_1207821_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00570.1|1208101_1209244_+	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	62.4	6.8e-128
AYD00571.1|1209246_1210212_+	GDP-L-fucose synthase	NA	M4R1H4	Synechococcus_phage	54.8	4.6e-93
AYD00572.1|1210211_1211507_+	colanic acid biosynthesis glycosyltransferase WcaI	NA	NA	NA	NA	NA
AYD00573.1|1211503_1212811_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00574.1|1213997_1214582_+	hypothetical protein	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	55.4	5.0e-10
AYD00575.1|1215072_1215645_+	colanic acid biosynthesis acetyltransferase	NA	NA	NA	NA	NA
AYD00576.1|1215641_1216562_+	LPS beta-1,4-glucosyltransferase	NA	NA	NA	NA	NA
AYD00577.1|1216930_1217800_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00578.1|1217780_1218287_+	hypothetical protein	NA	NA	NA	NA	NA
AYD00579.1|1218353_1218620_+|transposase	transposase	transposase	NA	NA	NA	NA
AYD00580.1|1218775_1219456_+|integrase	integrase	integrase	S5WIU1	Leptospira_phage	41.9	1.4e-40
1231250:1231264	attR	GAGATATCGACGAAG	NA	NA	NA	NA
>prophage 6
CP030827	Neorhizobium sp. NCHU2750 chromosome, complete genome	4319396	1575355	1583637	4319396		uncultured_Mediterranean_phage(16.67%)	8	NA	NA
AYD00917.1|1575355_1576870_-	hypothetical protein	NA	A0A1B1IT95	uncultured_Mediterranean_phage	30.1	2.2e-33
AYD00918.1|1576860_1577427_-	hypothetical protein	NA	A0A088F6W5	Sulfitobacter_phage	28.6	3.6e-05
AYD00919.1|1577426_1577774_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00920.1|1577893_1578823_-	hypothetical protein	NA	H6BJ47	Methylophilales_phage	42.3	3.7e-47
AYD00921.1|1578869_1579790_-	hypothetical protein	NA	A0A218MLX4	uncultured_virus	25.8	5.5e-11
AYD00922.1|1579858_1580113_-	hypothetical protein	NA	NA	NA	NA	NA
AYD00923.1|1580109_1582155_-	hypothetical protein	NA	A0A1Y0T151	Sinorhizobium_phage	25.8	6.6e-41
AYD00924.1|1582209_1583637_-	hypothetical protein	NA	A0A221SAK7	Ralstonia_phage	26.7	1.2e-28
>prophage 7
CP030827	Neorhizobium sp. NCHU2750 chromosome, complete genome	4319396	2209631	2220307	4319396	tRNA	uncultured_Mediterranean_phage(90.0%)	12	NA	NA
AYD01521.1|2209631_2209985_-	preprotein translocase subunit	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	38.4	8.8e-10
AYD01522.1|2210172_2211057_+	ATPase AAA family protein	NA	NA	NA	NA	NA
AYD01523.1|2211132_2212737_-	peptidoglycan-binding protein	NA	I3PV24	Clostridium_phage	30.4	3.5e-13
AYD01524.1|2212862_2213516_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	37.0	2.1e-17
AYD01525.1|2213512_2214283_-	stationary phase survival protein	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	35.5	1.1e-36
AYD01526.1|2214295_2215576_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.7	1.4e-92
AYD01527.1|2215627_2216458_-	sec-independent protein translocase protein	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	44.5	3.0e-48
AYD01528.1|2216454_2217285_-	sec-independent protein translocase protein	NA	NA	NA	NA	NA
AYD01529.1|2217319_2217532_-	sec-independent protein translocase protein	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	2.9e-08
AYD01530.1|2217686_2218415_-	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.8	4.4e-40
AYD01531.1|2218411_2219257_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.6	5.0e-35
AYD01532.1|2219290_2220307_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	44.8	3.9e-26
>prophage 8
CP030827	Neorhizobium sp. NCHU2750 chromosome, complete genome	4319396	2874007	2882175	4319396		Mesorhizobium_phage(33.33%)	14	NA	NA
AYD02175.1|2874007_2874406_+	nuclease	NA	G8DH70	Emiliania_huxleyi_virus	44.6	2.8e-20
AYD02176.1|2874409_2874877_-	hypothetical protein	NA	NA	NA	NA	NA
AYD02177.1|2874877_2875381_-	hypothetical protein	NA	K4NZT7	Burkholderia_phage	33.3	1.1e-13
AYD02178.1|2875548_2876247_-	membrane protein	NA	NA	NA	NA	NA
AYD02179.1|2876224_2876431_-	hypothetical protein	NA	NA	NA	NA	NA
AYD02180.1|2876427_2876700_-	hypothetical protein	NA	NA	NA	NA	NA
AYD02181.1|2876863_2878429_-	hypothetical protein	NA	A0A076YL80	Mesorhizobium_phage	30.1	3.1e-22
AYD02182.1|2878425_2878602_-	hypothetical protein	NA	NA	NA	NA	NA
AYD02183.1|2878605_2878959_-	hypothetical protein	NA	NA	NA	NA	NA
AYD02184.1|2878945_2879269_-	cell wall anchor protein	NA	R9TN87	Rhizobium_phage	44.2	1.5e-11
AYD02185.1|2879291_2880023_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A076YNV9	Mesorhizobium_phage	58.5	1.1e-41
AYD02186.1|2880041_2880608_-	beta-glucanase precursor	NA	NA	NA	NA	NA
AYD02187.1|2880610_2881066_-	hypothetical protein	NA	NA	NA	NA	NA
AYD02188.1|2881065_2882175_-	hypothetical protein	NA	F8TUT0	EBPR_podovirus	49.7	4.3e-26
>prophage 9
CP030827	Neorhizobium sp. NCHU2750 chromosome, complete genome	4319396	2887015	2898904	4319396	head,terminase	Sulfitobacter_phage(45.45%)	14	NA	NA
AYD02193.1|2887015_2888344_-	hypothetical protein	NA	A0A088FAP6	Sulfitobacter_phage	33.3	5.4e-44
AYD02194.1|2888344_2888803_-	hypothetical protein	NA	M4QQZ5	Sulfitobacter_phage	45.2	4.0e-23
AYD02195.1|2888799_2890413_-	hypothetical protein	NA	A0A088F6U1	Sulfitobacter_phage	37.7	1.4e-78
AYD02196.1|2890409_2891006_-	hypothetical protein	NA	F8TUS3	EBPR_podovirus	26.3	2.7e-11
AYD02197.1|2891002_2891602_-	hypothetical protein	NA	A0A2K9VHC9	Pseudomonas_phage	25.7	2.1e-11
AYD02198.1|2891601_2891763_-	hypothetical protein	NA	NA	NA	NA	NA
AYD02199.1|2891759_2892083_-	hypothetical protein	NA	A0A088FAQ1	Sulfitobacter_phage	50.0	9.8e-24
AYD02200.1|2892089_2892515_-	hypothetical protein	NA	NA	NA	NA	NA
AYD02201.1|2892584_2893577_-|head	head protein	head	F8TUR9	EBPR_podovirus	64.2	4.7e-117
AYD02202.1|2893601_2894603_-	hypothetical protein	NA	F8TUR8	EBPR_podovirus	39.7	1.0e-39
AYD02203.1|2894633_2894870_-	hypothetical protein	NA	NA	NA	NA	NA
AYD02204.1|2894866_2896945_-	hypothetical protein	NA	A0A088F830	Sulfitobacter_phage	50.8	4.2e-168
AYD02205.1|2896944_2898456_-|terminase	terminase	terminase	A0A088C4W7	Shewanella_sp._phage	41.0	2.1e-100
AYD02206.1|2898433_2898904_-|terminase	terminase small subunit protein	terminase	F8TUR4	EBPR_podovirus	62.7	1.0e-37
>prophage 10
CP030827	Neorhizobium sp. NCHU2750 chromosome, complete genome	4319396	3453866	3479973	4319396	transposase,tRNA	Burkholderia_virus(14.29%)	27	NA	NA
AYD02701.1|3453866_3454772_-|transposase	transposase	transposase	Q8W6R2	Burkholderia_virus	66.2	5.1e-102
AYD02702.1|3454768_3455098_-	hypothetical protein	NA	Q9ETV7	Enterobacteria_phage	55.5	1.1e-22
AYD02703.1|3455733_3456201_+|transposase	transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	47.9	5.1e-05
AYD02704.1|3456227_3456551_+|transposase	transposase	transposase	NA	NA	NA	NA
AYD02705.1|3456585_3458172_+	hypothetical protein	NA	A0A218MNE7	uncultured_virus	34.8	1.0e-49
AYD02706.1|3458168_3458774_+|transposase	transposase	transposase	NA	NA	NA	NA
AYD02707.1|3458818_3459937_+	dGTPase	NA	NA	NA	NA	NA
AYD02708.1|3459989_3461021_+	hypothetical protein	NA	NA	NA	NA	NA
AYD02709.1|3461811_3462327_+	membrane protein	NA	NA	NA	NA	NA
AYD02710.1|3462379_3462937_-	MFS transporter	NA	A0A1P8DIY8	Virus_Rctr197k	40.9	4.5e-24
AYD02711.1|3463104_3463752_-	DNA-3-methyladenine glycosidase II	NA	NA	NA	NA	NA
AYD02712.1|3463807_3464701_+|tRNA	glutamyl-Q tRNA(Asp) synthetase	tRNA	NA	NA	NA	NA
AYD02713.1|3464617_3465604_-	ribonuclease	NA	NA	NA	NA	NA
AYD02714.1|3465698_3466532_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AYD02715.1|3466552_3466756_+	membrane protein	NA	NA	NA	NA	NA
AYD02716.1|3466767_3467340_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AYD02717.1|3467600_3468347_+	electron transfer flavoprotein beta subunit	NA	NA	NA	NA	NA
AYD02718.1|3468372_3469302_+	electron transfer flavoprotein alpha subunit	NA	NA	NA	NA	NA
AYD02719.1|3469458_3470328_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYD02720.1|3470339_3472166_-	hypothetical protein	NA	NA	NA	NA	NA
AYD02721.1|3472322_3473006_-	sodium dicarboxylate symporter	NA	NA	NA	NA	NA
AYD02722.1|3473030_3474431_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AYD02723.1|3474497_3474749_+	hypothetical protein	NA	NA	NA	NA	NA
AYD02724.1|3474764_3476033_+	diaminopimelate decarboxylase	NA	A0A060D2X4	Bovine_gammaherpesvirus	25.7	4.1e-17
AYD02725.1|3476179_3478954_+	membrane protein	NA	NA	NA	NA	NA
AYD02726.1|3479018_3479537_-|transposase	transposase	transposase	A0A1V0SCG6	Indivirus	25.6	1.5e-10
AYD02727.1|3479577_3479973_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 1
CP030828	Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence	764863	419573	428292	764863	holin	Catovirus(33.33%)	8	NA	NA
AYD03852.1|419573_421181_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	29.4	2.5e-51
AYD03853.1|421364_422195_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.6	6.4e-51
AYD03854.1|422365_423244_-	3-hydroxyisobutyrate dehydrogenase	NA	A0A077SLF7	Escherichia_phage	28.1	1.1e-21
AYD03855.1|423282_424878_-|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	29.9	1.9e-51
AYD03856.1|424890_425895_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYD03857.1|425908_426796_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYD03858.1|426800_427502_-	branched-chain amino acid ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.8	6.2e-15
AYD03859.1|427503_428292_-	branched-chain amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.1	9.1e-15
>prophage 1
CP030830	Neorhizobium sp. NCHU2750 plasmid pNCHU2750c, complete sequence	380325	20989	73986	380325	protease,integrase,tail,transposase	Planktothrix_phage(22.22%)	57	26034:26049	33158:33173
AYD04557.1|20989_22111_+|tail	side tail fiber protein	tail	NA	NA	NA	NA
AYD04558.1|22353_23481_-|integrase	integrase	integrase	NA	NA	NA	NA
AYD04559.1|23477_23726_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04560.1|23879_24158_+	prevent-host-death protein	NA	NA	NA	NA	NA
AYD04561.1|24144_24576_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04562.1|24920_25595_-	transcriptional regulator	NA	NA	NA	NA	NA
AYD04563.1|25742_26663_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
26034:26049	attL	CAATCGCAGCGCGCCG	NA	NA	NA	NA
AYD04564.1|26690_27428_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYD04565.1|27431_28232_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.0	2.3e-29
AYD04566.1|28336_29533_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AYD04567.1|29550_30939_+	ethanolamine ammonia lyase large subunit	NA	NA	NA	NA	NA
AYD04568.1|30935_31766_+	ethanolamine ammonia lyase small subunit	NA	NA	NA	NA	NA
AYD04569.1|31935_33084_-|integrase	integrase	integrase	NA	NA	NA	NA
AYD04570.1|33073_33487_-	DNA-binding protein	NA	NA	NA	NA	NA
33158:33173	attR	CGGCGCGCTGCGATTG	NA	NA	NA	NA
AYD04571.1|33486_33726_-	prevent-host-death protein	NA	NA	NA	NA	NA
AYD04572.1|33915_35064_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04573.1|35148_35898_+	hypothetical protein	NA	A0A143FJ52	Bacillus_phage	28.1	1.1e-06
AYD04574.1|35894_36974_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04575.1|37510_37993_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04576.1|38262_39510_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04577.1|39690_39825_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04578.1|40102_40618_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYD04579.1|40781_41738_+	transmembrane sensor	NA	NA	NA	NA	NA
AYD04580.1|41846_44339_+	outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid	NA	NA	NA	NA	NA
AYD04581.1|44387_45413_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYD04582.1|45409_46171_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04583.1|46170_47229_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AYD04584.1|47225_48341_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AYD04585.1|48337_49165_+	iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	3.6e-14
AYD04586.1|49157_50894_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.9	1.2e-54
AYD04587.1|50969_51464_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04588.1|51733_55174_+	diguanylate cyclase	NA	A0A1V0SGX0	Hokovirus	28.5	5.2e-30
AYD04589.1|55170_56013_+	chemotaxis protein	NA	NA	NA	NA	NA
AYD04590.1|56009_56570_+	chemotaxis protein	NA	NA	NA	NA	NA
AYD04591.1|56577_57639_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04592.1|57813_58797_+	histidine kinase	NA	NA	NA	NA	NA
AYD04593.1|58862_59066_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04594.1|59199_59679_+	photosystem reaction center subunit H	NA	NA	NA	NA	NA
AYD04595.1|59933_60167_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04596.1|60349_60610_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04597.1|60610_60997_-	chemotaxis protein CheY	NA	NA	NA	NA	NA
AYD04598.1|60993_63093_-	histidine kinase	NA	NA	NA	NA	NA
AYD04599.1|63650_64778_+	signal transduction histidine kinase	NA	NA	NA	NA	NA
AYD04600.1|64774_65206_+	transcriptional regulator	NA	NA	NA	NA	NA
AYD04601.1|65379_65646_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04602.1|65862_66042_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04603.1|66076_66583_-	hydrolase	NA	A0A2H5BGP7	Vibrio_virus	32.8	1.0e-14
AYD04604.1|66589_66991_-	membrane protein	NA	NA	NA	NA	NA
AYD04605.1|67194_67452_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04606.1|67577_67844_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04607.1|68190_68403_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04608.1|68435_69293_-	short-chain dehydrogenase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	47.7	2.3e-64
AYD04609.1|69358_69928_-|protease	protease I	protease	NA	NA	NA	NA
AYD04610.1|70278_72018_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04611.1|71983_72313_+	hypothetical protein	NA	Q9ETV7	Enterobacteria_phage	55.5	1.1e-22
AYD04612.1|72309_73215_+|transposase	transposase	transposase	Q8W6R2	Burkholderia_virus	66.2	5.1e-102
AYD04613.1|73263_73986_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP030830	Neorhizobium sp. NCHU2750 plasmid pNCHU2750c, complete sequence	380325	227966	267552	380325	transposase,tRNA	Brochothrix_phage(20.0%)	39	NA	NA
AYD04759.1|227966_228764_-|transposase	transposase	transposase	A0A1P8CWQ3	Bacillus_phage	33.7	1.5e-33
AYD04760.1|228760_229123_-|transposase	transposase	transposase	NA	NA	NA	NA
AYD04761.1|229532_230534_+	cell division protein Fic	NA	D7RWK9	Brochothrix_phage	29.9	2.4e-36
AYD04762.1|230663_230918_+	prevent-host-death protein	NA	NA	NA	NA	NA
AYD04763.1|231678_233007_-	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	27.1	1.1e-12
AYD04764.1|233003_234278_-	ribulose 1,5-bisphosphate carboxylase large subunit	NA	NA	NA	NA	NA
AYD04765.1|234277_234835_-	glyoxalase	NA	NA	NA	NA	NA
AYD04766.1|234859_236734_-	ABC transporter permease	NA	NA	NA	NA	NA
AYD04767.1|236733_237759_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYD04768.1|237870_238677_-	short-chain dehydrogenase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	29.7	2.0e-09
AYD04769.1|238794_239856_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AYD04770.1|240076_242431_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04771.1|242632_243739_+	cell division protein Fic	NA	D7RWK9	Brochothrix_phage	21.3	3.7e-06
AYD04772.1|243863_244763_-	DNA-binding protein	NA	A0A059NT88	Lactococcus_phage	27.0	3.2e-16
AYD04773.1|245428_245710_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AYD04774.1|245885_246011_+	plasmid stabilization protein	NA	NA	NA	NA	NA
AYD04775.1|246113_247064_+	nucleotidyltransferase	NA	NA	NA	NA	NA
AYD04776.1|247258_247609_+|transposase	transposase	transposase	NA	NA	NA	NA
AYD04777.1|247635_248496_-|transposase	transposase	transposase	U5P429	Shigella_phage	62.7	1.7e-91
AYD04778.1|248492_248762_-|transposase	transposase	transposase	NA	NA	NA	NA
AYD04779.1|248895_250209_-|tRNA	aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
AYD04780.1|250322_251354_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04781.1|251542_252676_+	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYD04782.1|252707_253439_+	allantoin racemase	NA	NA	NA	NA	NA
AYD04783.1|253438_254350_+	spermidine/putrescine ABC transporter permease	NA	NA	NA	NA	NA
AYD04784.1|254346_255174_+	spermidine/putrescine ABC transporter permease	NA	NA	NA	NA	NA
AYD04785.1|255170_256262_+	spermidine/putrescine ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	43.3	6.5e-27
AYD04786.1|256289_257372_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04787.1|257368_258907_+	hydantoinase	NA	NA	NA	NA	NA
AYD04788.1|259051_259852_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04789.1|259853_260648_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.4	5.9e-30
AYD04790.1|260672_261389_-	hypothetical protein	NA	NA	NA	NA	NA
AYD04791.1|261393_262383_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYD04792.1|262379_263684_-	N-carbamoyl-beta-alanine amidohydrolase	NA	NA	NA	NA	NA
AYD04793.1|263859_264465_+	transcriptional regulator	NA	NA	NA	NA	NA
AYD04794.1|264548_265319_+	hypothetical protein	NA	NA	NA	NA	NA
AYD04795.1|265336_266215_+	hydratase	NA	M1I6H3	Paramecium_bursaria_Chlorella_virus	35.2	1.3e-25
AYD04796.1|266717_266918_-	antitoxin	NA	NA	NA	NA	NA
AYD04797.1|267033_267552_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 1
CP030832	Neorhizobium sp. NCHU2750 plasmid pNCHU2750d, complete sequence	200147	5556	57892	200147	transposase,integrase	uncultured_Caudovirales_phage(25.0%)	57	NA	NA
AYD05105.1|5556_6024_+|transposase	transposase	transposase	NA	NA	NA	NA
AYD05106.1|6781_7105_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05107.1|7179_7380_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05108.1|7482_7746_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05109.1|7960_8251_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05110.1|8367_8868_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05111.1|9064_9376_-	nodulation repressor NolR	NA	NA	NA	NA	NA
AYD05112.1|9655_10408_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05113.1|10554_10833_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05114.1|10865_11063_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05115.1|11473_12178_-|integrase	integrase	integrase	NA	NA	NA	NA
AYD05116.1|12304_12523_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05117.1|12676_12955_+	prevent-host-death protein	NA	NA	NA	NA	NA
AYD05118.1|13180_13825_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05119.1|13858_14281_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05120.1|14277_14544_-	prevent-host-death protein	NA	NA	NA	NA	NA
AYD05121.1|14898_15282_-|integrase	phage integrase	integrase	NA	NA	NA	NA
AYD05122.1|15780_16944_-|integrase	integrase	integrase	NA	NA	NA	NA
AYD05123.1|16943_17231_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05124.1|17508_19182_-|transposase	transposase	transposase	NA	NA	NA	NA
AYD05125.1|19196_20342_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05126.1|20850_21957_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05127.1|21946_22882_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05128.1|22883_23906_-	thymidylate synthase	NA	E5EYJ9	Acinetobacter_phage	28.1	1.1e-12
AYD05129.1|23994_24780_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05130.1|24928_25282_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYD05131.1|25251_25716_+	amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AYD05132.1|25730_26258_+	ArsR family transcriptional regulator	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	42.0	1.0e-25
AYD05133.1|26257_27316_+	arsenic transporter	NA	NA	NA	NA	NA
AYD05134.1|27318_27744_+	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	65.0	7.8e-45
AYD05135.1|27736_28447_+	arsenical resistance protein	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	67.1	4.7e-87
AYD05136.1|28588_30781_-	diguanylate cyclase	NA	NA	NA	NA	NA
AYD05137.1|31947_32343_+	membrane protein	NA	NA	NA	NA	NA
AYD05138.1|32831_33485_+	BA14K family-like protein	NA	NA	NA	NA	NA
AYD05139.1|33830_34301_+	molecular chaperone Hsp20	NA	M1UG22	Synechococcus_phage	36.9	5.8e-17
AYD05140.1|34399_34696_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05141.1|34798_35113_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05142.1|35241_35460_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05143.1|36422_38168_+	histidine kinase	NA	A0A1B0VMK3	Pseudomonas_phage	35.9	7.7e-30
AYD05144.1|38768_41855_+	histidine kinase	NA	A0A1V0SGX0	Hokovirus	21.8	2.3e-05
AYD05145.1|42133_42397_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05146.1|42458_42833_-	histidine kinase	NA	NA	NA	NA	NA
AYD05147.1|42822_46146_-	chemotaxis protein	NA	NA	NA	NA	NA
AYD05148.1|46266_46839_-	histidine kinase	NA	NA	NA	NA	NA
AYD05149.1|47307_47730_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05150.1|47957_48098_-	hypothetical protein	NA	NA	NA	NA	NA
AYD05151.1|48140_48350_+	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	48.3	1.5e-09
AYD05152.1|48470_48695_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05153.1|49186_49462_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05154.1|49682_50135_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05155.1|50908_53029_+	hypothetical protein	NA	B5LWN8	Feldmannia_species_virus	23.0	1.1e-19
AYD05156.1|53339_53552_+	hypothetical protein	NA	NA	NA	NA	NA
AYD05157.1|54232_54910_-|integrase	integrase	integrase	S5WIU1	Leptospira_phage	41.6	1.9e-40
AYD05158.1|55136_56189_+|transposase	transposase	transposase	M1NSC9	Streptococcus_phage	27.8	2.7e-06
AYD05159.1|56388_56691_-|transposase	transposase	transposase	NA	NA	NA	NA
AYD05160.1|56789_57056_+|transposase	transposase	transposase	NA	NA	NA	NA
AYD05161.1|57094_57892_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	26.6	3.4e-09
