assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003600355.1_ASM360035v1	CP032416	Clostridium sp. JN500901 chromosome, complete genome	1	950985-955888	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,c2c10_CAS-V-U3,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas8b1,cas7b,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh	Orphan	GTTGAACCTTAACATAAGATGTATTTAAAT,GTTGAACCTTAACATAAGATGTATTTAAAT,GTTGAACCTTAACATAAGATGTATTTAAAT	30,30,30	0	0	NA	NA	III-B:III-B:III-B	73,74,74	74	Orphan	csa3,c2c10_CAS-V-U3,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas8b1,cas7b,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh	NA|126aa|up_8|CP032416.1_941456_941834_+,NA|108aa|up_7|CP032416.1_941940_942264_+,NA|197aa|down_0|CP032416.1_957374_957965_+	NA|1732aa|up_9|CP032416.1_936161_941357_+	cd13403, MLTF-like, membrane-bound lytic murein transglycosylase F (MLTF) and similar proteins	NA|126aa|up_8|CP032416.1_941456_941834_+	NA	NA|108aa|up_7|CP032416.1_941940_942264_+	NA	NA|631aa|up_6|CP032416.1_943117_945010_-	pfam13289, SIR2_2, SIR2-like domain	NA|189aa|up_5|CP032416.1_945383_945950_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|262aa|up_4|CP032416.1_946223_947009_+	pfam06664, MIG-14_Wnt-bd, Wnt-binding factor required for Wnt secretion	NA|146aa|up_3|CP032416.1_947017_947455_+	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|251aa|up_2|CP032416.1_947484_948237_+	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|336aa|up_1|CP032416.1_948297_949305_+	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|275aa|up_0|CP032416.1_949412_950237_+	cd12212, Fis1, Mitochondrial Fission Protein Fis1, cytosolic domain	NA|197aa|down_0|CP032416.1_957374_957965_+	NA	NA|578aa|down_1|CP032416.1_958162_959896_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|418aa|down_2|CP032416.1_960291_961545_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|197aa|down_3|CP032416.1_961815_962406_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|348aa|down_4|CP032416.1_962419_963463_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|342aa|down_5|CP032416.1_963495_964521_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|377aa|down_6|CP032416.1_964532_965663_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|103aa|down_7|CP032416.1_965699_966008_+	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|125aa|down_8|CP032416.1_966059_966434_+	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family	NA|46aa|down_9|CP032416.1_966518_966656_+	TIGR03973, conserved_hypothetical_protein, six-cysteine peptide SCIFF
GCA_003600355.1_ASM360035v1	CP032416	Clostridium sp. JN500901 chromosome, complete genome	2	1361009-1363123	2,2,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,c2c10_CAS-V-U3,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas8b1,cas7b,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh	Unclear	GTTTTATAAGAACTATGTGGTATGTAAAT,GTTTTATAAGAACTATGTGGTATGTAAAT,GTTTTATAAGAACTATGTGGTATGTAAAT,GTTTTATAAGAACTATGTGGTATGTAAAT	29,29,29,29	1	1	1361757-1361791	CP032416.1_1548817-1548783	NA:NA:NA:NA	30,32,32,30	32	Unclear	csa3,c2c10_CAS-V-U3,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas8b1,cas7b,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh	NA,NA	NA|978aa|up_9|CP032416.1_1348161_1351095_+	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	WYL|312aa|up_8|CP032416.1_1351562_1352498_+	pfam13280, WYL, WYL domain	cas6|244aa|up_7|CP032416.1_1352618_1353350_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas8b2|554aa|up_6|CP032416.1_1353365_1355027_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|292aa|up_5|CP032416.1_1355028_1355904_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|248aa|up_4|CP032416.1_1355912_1356656_+	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|756aa|up_3|CP032416.1_1356776_1359044_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|172aa|up_2|CP032416.1_1359054_1359570_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|328aa|up_1|CP032416.1_1359575_1360559_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_0|CP032416.1_1360560_1360824_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|432aa|down_0|CP032416.1_1363636_1364932_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|210aa|down_1|CP032416.1_1365092_1365722_+	pfam13171, DUF4004, Protein of unknown function (DUF4004)	NA|241aa|down_2|CP032416.1_1365739_1366462_+	COG1664, CcmA, Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]	NA|114aa|down_3|CP032416.1_1366845_1367187_+	cd20299, cupin_YP766765-like, Rhizobium leguminosarum YP_766765	NA|263aa|down_4|CP032416.1_1367226_1368015_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|313aa|down_5|CP032416.1_1368084_1369023_+	pfam04199, Cyclase, Putative cyclase	NA|400aa|down_6|CP032416.1_1369266_1370466_+	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily	NA|218aa|down_7|CP032416.1_1370787_1371441_+	PRK09920, PRK09920, acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional	NA|221aa|down_8|CP032416.1_1371440_1372103_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|392aa|down_9|CP032416.1_1372137_1373313_+	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_003600355.1_ASM360035v1	CP032416	Clostridium sp. JN500901 chromosome, complete genome	3	1401021-1407156	4,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2	csa3,c2c10_CAS-V-U3,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas8b1,cas7b,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh	Type I-B	GTTGAACCTTAACATAAGATGTATTTAAAT,GTTGAACCTTAACATAAGATGTATTTAAAT,GTTGAACCTTAACATAAGATGTATTTAAAT	30,30,30	0	0	NA	NA	III-B:III-B:III-B	93,93,93	93	TypeI-B	csa3,c2c10_CAS-V-U3,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas8b1,cas7b,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh	NA,NA|162aa|down_1|CP032416.1_1409649_1410135_+,NA|166aa|down_4|CP032416.1_1412679_1413177_+	NA|394aa|up_9|CP032416.1_1389898_1391080_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|411aa|up_8|CP032416.1_1391116_1392349_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|431aa|up_7|CP032416.1_1392459_1393752_+	pfam09861, DUF2088, Domain of unknown function (DUF2088)	NA|325aa|up_6|CP032416.1_1393771_1394746_+	pfam03812, KdgT, 2-keto-3-deoxygluconate permease	NA|250aa|up_5|CP032416.1_1394989_1395739_+	pfam01969, DUF111, Protein of unknown function DUF111	NA|268aa|up_4|CP032416.1_1395783_1396587_+	COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	NA|249aa|up_3|CP032416.1_1396593_1397340_+	COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General function prediction only]	NA|239aa|up_2|CP032416.1_1397524_1398241_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|163aa|up_1|CP032416.1_1398546_1399035_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|536aa|up_0|CP032416.1_1399106_1400714_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|67aa|down_0|CP032416.1_1409452_1409653_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|162aa|down_1|CP032416.1_1409649_1410135_+	NA	NA|266aa|down_2|CP032416.1_1410359_1411157_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|272aa|down_3|CP032416.1_1411697_1412513_+	cd16280, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|166aa|down_4|CP032416.1_1412679_1413177_+	NA	cas6|237aa|down_5|CP032416.1_1416701_1417412_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|577aa|down_6|CP032416.1_1417430_1419161_+	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	cas7b|310aa|down_7|CP032416.1_1419161_1420091_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|248aa|down_8|CP032416.1_1420094_1420838_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|843aa|down_9|CP032416.1_1420847_1423376_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
GCA_003600355.1_ASM360035v1	CP032416	Clostridium sp. JN500901 chromosome, complete genome	4	1413703-1416428	5,4,4	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11	csa3,c2c10_CAS-V-U3,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas8b1,cas7b,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh	Type III-D,Type III-A,Type III-B, Type III-B?,Type III-C,Type I-B	GTTGAACCATAACATGAGATGTATTTAAA,GTTGAACCATAACATGAGATGTATTTAAAT,GTTGAACCATAACATGAGATGTATTTAAA	29,30,29	0	0	NA	NA	III-B:III-B:III-B	40,41,41	41	TypeI-B,TypeIII-A,TypeIII-B,TypeIII-B?,TypeIII-C,TypeIII-D	csa3,c2c10_CAS-V-U3,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas8b1,cas7b,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh	NA|162aa|up_3|CP032416.1_1409649_1410135_+,NA|166aa|up_0|CP032416.1_1412679_1413177_+,NA|97aa|down_9|CP032416.1_1426292_1426583_-	NA|268aa|up_9|CP032416.1_1395783_1396587_+	COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	NA|249aa|up_8|CP032416.1_1396593_1397340_+	COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General function prediction only]	NA|239aa|up_7|CP032416.1_1397524_1398241_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|163aa|up_6|CP032416.1_1398546_1399035_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|536aa|up_5|CP032416.1_1399106_1400714_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|67aa|up_4|CP032416.1_1409452_1409653_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|162aa|up_3|CP032416.1_1409649_1410135_+	NA	NA|266aa|up_2|CP032416.1_1410359_1411157_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|272aa|up_1|CP032416.1_1411697_1412513_+	cd16280, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|166aa|up_0|CP032416.1_1412679_1413177_+	NA	cas6|237aa|down_0|CP032416.1_1416701_1417412_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|577aa|down_1|CP032416.1_1417430_1419161_+	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	cas7b|310aa|down_2|CP032416.1_1419161_1420091_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|248aa|down_3|CP032416.1_1420094_1420838_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|843aa|down_4|CP032416.1_1420847_1423376_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|165aa|down_5|CP032416.1_1423390_1423885_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|335aa|down_6|CP032416.1_1423908_1424913_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|95aa|down_7|CP032416.1_1424928_1425213_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|141aa|down_8|CP032416.1_1425320_1425743_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|97aa|down_9|CP032416.1_1426292_1426583_-	NA
GCA_003600355.1_ASM360035v1	CP032416	Clostridium sp. JN500901 chromosome, complete genome	5	1425942-1426167	6,5,5	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7	csa3,c2c10_CAS-V-U3,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas8b1,cas7b,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh	Type I-B,Type III-A,Type III-B,Type III-C,Type III-D	GTTGAAGTTGAACCTTAACATGAGATGTA,GTTGAAGTTGAACCTTAACATGAGATGTA,GTTGAAGTTGAACCTTAACATGAGATGTA	29,29,29	0	0	NA	NA	III-B:III-B:III-B	2,3,3	3	TypeI-B,TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,c2c10_CAS-V-U3,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas8b1,cas7b,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7,DEDDh	NA|166aa|up_9|CP032416.1_1412679_1413177_+,NA|97aa|down_0|CP032416.1_1426292_1426583_-,NA|78aa|down_2|CP032416.1_1428045_1428279_+,csx1|461aa|down_8|CP032416.1_1433524_1434907_+	NA|166aa|up_9|CP032416.1_1412679_1413177_+	NA	cas6|237aa|up_8|CP032416.1_1416701_1417412_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|577aa|up_7|CP032416.1_1417430_1419161_+	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	cas7b|310aa|up_6|CP032416.1_1419161_1420091_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|248aa|up_5|CP032416.1_1420094_1420838_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|843aa|up_4|CP032416.1_1420847_1423376_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|165aa|up_3|CP032416.1_1423390_1423885_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|335aa|up_2|CP032416.1_1423908_1424913_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|95aa|up_1|CP032416.1_1424928_1425213_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|141aa|up_0|CP032416.1_1425320_1425743_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|97aa|down_0|CP032416.1_1426292_1426583_-	NA	NA|127aa|down_1|CP032416.1_1426763_1427144_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|78aa|down_2|CP032416.1_1428045_1428279_+	NA	NA|178aa|down_3|CP032416.1_1428343_1428877_-	cd02151, nitroreductase, nitroreductase family protein	NA|77aa|down_4|CP032416.1_1429037_1429268_+	pfam13031, DUF3892, Protein of unknown function (DUF3892)	cmr1gr7|312aa|down_5|CP032416.1_1429496_1430432_+	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1	cas10|647aa|down_6|CP032416.1_1430428_1432369_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|382aa|down_7|CP032416.1_1432379_1433525_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	csx1|461aa|down_8|CP032416.1_1433524_1434907_+	NA	cmr4gr7|285aa|down_9|CP032416.1_1434922_1435777_+	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]
