assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003610975.1_ASM361097v1	CP017982	Lactobacillus helveticus strain LH99 chromosome, complete genome	1	562582-563863	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	cas14k,cas14j,Cas14u_CAS-V,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,RT,c2c9_V-U4	Unclear	GTTTTTATTTAACTTAAGAGAAATGTAAAG,GTTTTTATTTAACTTAAGAGAAATGTAAAG,NGTTTTTATTTAACTTAAGAGAAATGTAAAG	30,30,31	0	0	NA	NA	NA:NA:NA	15,18,19	19	Unclear	cas14k,cas14j,Cas14u_CAS-V,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,RT,c2c9_V-U4	NA,NA|41aa|down_8|CP017982.1_574155_574278_-	NA|247aa|up_9|CP017982.1_552830_553571_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	cas6|252aa|up_8|CP017982.1_553881_554637_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|586aa|up_7|CP017982.1_554654_556412_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|301aa|up_6|CP017982.1_556430_557333_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|238aa|up_5|CP017982.1_557319_558033_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|810aa|up_4|CP017982.1_558175_560605_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|106aa|up_3|CP017982.1_560620_560938_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|38aa|up_2|CP017982.1_560997_561111_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|292aa|up_1|CP017982.1_561120_561996_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|94aa|up_0|CP017982.1_562115_562397_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|888aa|down_0|CP017982.1_563953_566617_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|277aa|down_1|CP017982.1_566625_567456_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|201aa|down_2|CP017982.1_567452_568055_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|156aa|down_3|CP017982.1_568057_568525_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|444aa|down_4|CP017982.1_568527_569859_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|309aa|down_5|CP017982.1_569872_570799_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|645aa|down_6|CP017982.1_571089_573024_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|275aa|down_7|CP017982.1_573291_574116_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|41aa|down_8|CP017982.1_574155_574278_-	NA	NA|119aa|down_9|CP017982.1_574898_575255_+	PRK00028, infC, translation initiation factor IF-3; Reviewed
GCA_003610975.1_ASM361097v1	CP017982	Lactobacillus helveticus strain LH99 chromosome, complete genome	2	679887-681012	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,cas14j,Cas14u_CAS-V,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,RT,c2c9_V-U4	Orphan	GTATTCTCCACGTATGTGGAGGTGATCC,GTATTCTCCACGTATGTGGAGGTGATCC,GTATTCTCCACGTATGTGGAGGTGATCC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	17,18,18	18	Orphan	cas14k,cas14j,Cas14u_CAS-V,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,RT,c2c9_V-U4	NA|262aa|up_6|CP017982.1_672510_673296_+,NA|169aa|up_4|CP017982.1_674501_675008_-,NA|102aa|down_3|CP017982.1_683025_683331_+,NA|99aa|down_4|CP017982.1_683444_683741_+	NA|391aa|up_9|CP017982.1_670124_671297_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|136aa|up_8|CP017982.1_671315_671723_+	pfam02566, OsmC, OsmC-like protein	NA|235aa|up_7|CP017982.1_671742_672447_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|262aa|up_6|CP017982.1_672510_673296_+	NA	NA|329aa|up_5|CP017982.1_673412_674399_+	pfam13457, SH3_8, SH3-like domain	NA|169aa|up_4|CP017982.1_674501_675008_-	NA	NA|484aa|up_3|CP017982.1_675189_676641_+	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|147aa|up_2|CP017982.1_676773_677214_+	PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional	NA|308aa|up_1|CP017982.1_677621_678545_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|209aa|up_0|CP017982.1_678553_679180_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|109aa|down_0|CP017982.1_681034_681361_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|253aa|down_1|CP017982.1_681365_682124_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|221aa|down_2|CP017982.1_682261_682924_-	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit	NA|102aa|down_3|CP017982.1_683025_683331_+	NA	NA|99aa|down_4|CP017982.1_683444_683741_+	NA	NA|120aa|down_5|CP017982.1_683882_684242_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|235aa|down_6|CP017982.1_684225_684930_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|210aa|down_7|CP017982.1_685042_685672_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|367aa|down_8|CP017982.1_686073_687174_+	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|389aa|down_9|CP017982.1_687161_688328_+	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains
GCA_003610975.1_ASM361097v1	CP017982	Lactobacillus helveticus strain LH99 chromosome, complete genome	3	1626547-1626737	3	PILER-CR	no	cas14j,cas14k	cas14k,cas14j,Cas14u_CAS-V,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,RT,c2c9_V-U4	Unclear	ATGTGGGATTTGAACCCACGCACGCCAGAACC	32	0	0	NA	NA	NA	2	2	TypeV	cas14k,cas14j,Cas14u_CAS-V,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,RT,c2c9_V-U4	NA|75aa|up_3|CP017982.1_1622416_1622641_+,NA|114aa|down_9|CP017982.1_1637864_1638206_-	NA|490aa|up_9|CP017982.1_1615980_1617450_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|177aa|up_8|CP017982.1_1617740_1618271_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|443aa|up_7|CP017982.1_1618283_1619612_+	PRK10720, PRK10720, uracil transporter; Provisional	NA|461aa|up_6|CP017982.1_1619679_1621062_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|167aa|up_5|CP017982.1_1621149_1621650_+	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|157aa|up_4|CP017982.1_1621714_1622185_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|75aa|up_3|CP017982.1_1622416_1622641_+	NA	NA|446aa|up_2|CP017982.1_1622813_1624151_-	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	cas14j|410aa|up_1|CP017982.1_1624252_1625482_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|141aa|up_0|CP017982.1_1625570_1625993_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	cas14k|442aa|down_0|CP017982.1_1627126_1628452_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|203aa|down_1|CP017982.1_1628481_1629090_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	NA|167aa|down_2|CP017982.1_1629192_1629693_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|67aa|down_3|CP017982.1_1631622_1631823_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|444aa|down_4|CP017982.1_1631917_1633249_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|50aa|down_5|CP017982.1_1633344_1633494_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|218aa|down_6|CP017982.1_1633603_1634257_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|451aa|down_7|CP017982.1_1634734_1636087_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|459aa|down_8|CP017982.1_1636451_1637828_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|114aa|down_9|CP017982.1_1637864_1638206_-	NA
