The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031770	Streptococcus pyogenes strain SASM4-Duke chromosome, complete genome	1903997	335926	341960	1903997		Streptococcus_phage(100.0%)	9	NA	NA
AYJ01853.1|335926_336562_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
AYJ01854.1|336579_337455_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	1.8e-72
AYJ01855.1|337473_337713_+	Tpl protein	NA	NA	NA	NA	NA
AYJ01856.1|338116_338440_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
AYJ01857.1|338444_339308_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	1.5e-114
AYJ01858.1|339334_339727_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ01859.1|339773_340403_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AYJ01860.1|340702_341059_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	66.7	2.8e-40
AYJ01861.1|341132_341960_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.5	2.2e-128
>prophage 2
CP031770	Streptococcus pyogenes strain SASM4-Duke chromosome, complete genome	1903997	351558	400376	1903997	tRNA,transposase,protease,bacteriocin	Mycobacterium_phage(14.29%)	54	NA	NA
AYJ01868.1|351558_353559_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	35.3	3.5e-87
AYJ01869.1|354053_355067_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.7	1.9e-97
AYJ01870.1|355070_355505_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	R4JF54	Bacillus_phage	37.5	1.2e-11
AYJ01871.1|355524_357705_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.1	3.6e-170
AYJ01872.1|357910_358663_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
AYJ03321.1|359121_359616_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ01873.1|359853_360114_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ01874.1|360522_360774_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ01875.1|360867_361575_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ01876.1|363754_363991_+	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
AYJ01877.1|363983_364682_+	3-oxoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	24.4	2.3e-09
AYJ01878.1|364757_365717_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AYJ01879.1|366049_367387_+	MFS transporter	NA	NA	NA	NA	NA
AYJ01880.1|367509_368892_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L4K9	Tupanvirus	36.4	1.3e-32
AYJ01881.1|368922_369477_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AYJ01882.1|369476_369728_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ01883.1|369747_370443_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
AYJ01884.1|370593_370935_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ01885.1|371031_371679_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
AYJ01886.1|371824_372757_+	metal ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
AYJ01887.1|372820_373546_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.1e-17
AYJ01888.1|373546_374401_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AYJ01889.1|374548_375355_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
AYJ01890.1|375571_377977_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
AYJ01891.1|378046_378400_-	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
AYJ01892.1|378643_379069_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AYJ01893.1|379174_379864_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AYJ01894.1|380185_380914_+	UMP kinase	NA	NA	NA	NA	NA
AYJ01895.1|380942_381500_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AYJ01896.1|381608_382466_+	RNA-binding protein	NA	NA	NA	NA	NA
AYJ01897.1|382538_383048_+	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AYJ01898.1|383044_383260_+	YozE family protein	NA	NA	NA	NA	NA
AYJ01899.1|383415_384597_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.6e-16
AYJ01900.1|384912_386685_+	oleate hydratase	NA	NA	NA	NA	NA
AYJ01901.1|386843_387863_+	PhoH family protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
AYJ01902.1|387940_388516_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
AYJ01903.1|388674_389172_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AYJ01904.1|389152_389560_+	diacylglycerol kinase	NA	NA	NA	NA	NA
AYJ01905.1|389679_390576_+	GTPase Era	NA	NA	NA	NA	NA
AYJ01906.1|390595_391072_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AYJ01907.1|391376_391631_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ01908.1|392232_392679_-	ATP-binding cassette domain-containing protein	NA	F2Y302	Organic_Lake_phycodnavirus	35.1	2.0e-11
AYJ01909.1|392901_393612_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ01910.1|393716_393953_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AYJ01911.1|394250_394475_+|bacteriocin	ComC/BlpC family peptide pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
AYJ01912.1|394714_394942_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ01913.1|394949_395234_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYJ03322.1|395844_396072_+|bacteriocin	ComC/BlpC family peptide pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
AYJ01914.1|396120_396438_+	role in replication	NA	NA	NA	NA	NA
AYJ01915.1|396503_396785_+|transposase	transposase	transposase	NA	NA	NA	NA
AYJ01916.1|396817_397171_+	hypothetical protein	NA	A0A1B1P773	Bacillus_phage	36.2	9.1e-07
AYJ01917.1|397189_397642_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	43.4	2.2e-29
AYJ01918.1|398768_400103_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
AYJ01919.1|400250_400376_-|bacteriocin	ComC/BlpC family peptide pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 3
CP031770	Streptococcus pyogenes strain SASM4-Duke chromosome, complete genome	1903997	531331	690451	1903997	terminase,bacteriocin,integrase,protease,capsid,tail,tRNA,head,holin,portal	Streptococcus_phage(44.54%)	176	565366:565383	618597:618614
AYJ03328.1|531331_532456_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AYJ02042.1|532524_533622_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AYJ02043.1|533641_534334_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	35.6	1.0e-30
AYJ02044.1|534317_535256_+	ABC transporter permease	NA	NA	NA	NA	NA
AYJ02045.1|535565_536201_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	62.9	7.2e-79
AYJ02046.1|536432_537197_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
AYJ02047.1|537304_539806_+	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	48.4	3.0e-205
AYJ02048.1|540141_541335_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AYJ02049.1|541355_542702_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.4e-55
AYJ02050.1|543115_544006_+	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
AYJ02051.1|544002_544980_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	74.2	1.2e-138
AYJ02052.1|544976_545888_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.4	2.9e-105
AYJ02053.1|546084_547500_-	recombinase family protein	NA	A5GZ62	Lactococcus_phage	47.2	1.4e-109
AYJ02054.1|547650_548253_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	41.9	4.3e-33
AYJ02055.1|548218_548968_-	helix-turn-helix domain-containing protein	NA	A0A097PBE5	Streptococcus_pyogenes_phage	63.5	2.9e-79
AYJ02056.1|549354_549513_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	88.5	7.1e-20
AYJ02057.1|549611_550253_-	hypothetical protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
AYJ02058.1|550345_550552_+	XRE family transcriptional regulator	NA	A0A1X9I5S3	Streptococcus_phage	64.7	1.1e-17
AYJ02059.1|550593_550839_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	93.8	1.6e-34
AYJ02060.1|550797_551007_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02061.1|551169_551400_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02062.1|551544_551730_+	XRE family transcriptional regulator	NA	J7KH19	Streptococcus_phage	68.9	3.5e-18
AYJ02063.1|551802_552048_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02064.1|552194_552509_+	XRE family transcriptional regulator	NA	A0A1P8VVN6	Streptococcus_phage	99.0	4.8e-52
AYJ02065.1|552735_553218_+	hypothetical protein	NA	A0A1P8VVS5	Streptococcus_phage	100.0	1.2e-78
AYJ02066.1|553218_553899_+	AAA family ATPase	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
AYJ02067.1|554000_555230_+	DEAD/DEAH box helicase	NA	J7KK96	Streptococcus_phage	95.1	7.3e-229
AYJ02068.1|555245_555704_+	DUF669 domain-containing protein	NA	A0A1P8VVN0	Streptococcus_phage	94.1	2.2e-77
AYJ02069.1|555706_556519_+	hypothetical protein	NA	J7KH42	Streptococcus_phage	96.3	1.6e-152
AYJ02070.1|556508_557984_+	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	84.2	2.4e-242
AYJ02071.1|558245_558659_+	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	51.1	1.6e-15
AYJ02072.1|558655_558976_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	95.3	1.9e-51
AYJ02073.1|558959_559316_+	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	87.3	7.7e-54
AYJ02074.1|559440_559722_+	DUF1599 domain-containing protein	NA	J7KDH9	Streptococcus_phage	75.0	2.5e-31
AYJ02075.1|559714_559900_+	hypothetical protein	NA	A3F626	Streptococcus_phage	94.7	1.7e-12
AYJ02076.1|559896_560166_+	hypothetical protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
AYJ02077.1|560175_560589_+	hypothetical protein	NA	Q938M1	Temperate_phage	65.2	6.4e-36
AYJ02078.1|560585_560870_+	hypothetical protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
AYJ02079.1|560873_561356_+	class I SAM-dependent methyltransferase	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
AYJ02080.1|561321_562110_+	site-specific DNA-methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	92.3	5.7e-134
AYJ02081.1|562157_562883_+	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	44.8	3.1e-25
AYJ02082.1|563077_563374_+	hypothetical protein	NA	A0A097PAV3	Streptococcus_pyogenes_phage	98.5	1.4e-32
AYJ02083.1|563325_563763_+	DUF1492 domain-containing protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	97.9	6.7e-76
AYJ02084.1|564345_565275_+	hypothetical protein	NA	A0A126HAU2	Lactococcus_phage	71.8	4.9e-100
565366:565383	attL	TTTTTATTATGTAAAAAA	NA	NA	NA	NA
AYJ02085.1|565401_565779_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
AYJ02086.1|565830_566016_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
AYJ02087.1|566251_566590_+	HNH endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
AYJ02088.1|566760_567228_+|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
AYJ02089.1|567230_567461_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ03329.1|567464_569219_+|terminase	terminase large subunit	terminase	J7KKD1	Streptococcus_phage	96.1	0.0e+00
AYJ02090.1|569378_569603_+	hypothetical protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
AYJ02091.1|569636_570857_+|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	6.9e-187
AYJ02092.1|570834_571500_+|protease	Clp protease ClpP	protease	M1Q115	Streptococcus_phage	78.1	3.5e-92
AYJ02093.1|571524_572712_+|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	74.7	1.3e-158
AYJ02094.1|572856_573159_+	DNA packaging protein, QLRG family	NA	J7KC36	Streptococcus_phage	88.8	1.3e-41
AYJ02095.1|573155_573503_+|head,tail	head-tail adaptor protein	head,tail	J7KJ42	Streptococcus_phage	88.2	2.9e-50
AYJ02096.1|573499_573877_+	HK97 gp10 family phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.8e-45
AYJ02097.1|573873_574299_+	hypothetical protein	NA	J7KBZ9	Streptococcus_phage	84.4	7.2e-67
AYJ02098.1|574314_574923_+|tail	phage tail protein	tail	J7KKC8	Streptococcus_phage	71.9	6.7e-74
AYJ02099.1|574975_575302_+	hypothetical protein	NA	J7KK85	Streptococcus_phage	75.0	8.3e-39
AYJ02100.1|575511_579435_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	48.5	1.9e-238
AYJ02101.1|579434_580142_+|tail	phage tail protein	tail	Q938K2	Temperate_phage	71.9	6.8e-94
AYJ02102.1|580138_582286_+	peptidase	NA	Q938K1	Temperate_phage	94.4	0.0e+00
AYJ02103.1|582282_583497_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
AYJ02104.1|583483_583813_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02105.1|583823_585713_+	hyaluronidase	NA	Q938J9	Temperate_phage	75.8	4.5e-193
AYJ02106.1|585724_586156_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
AYJ02107.1|586158_586776_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
AYJ02108.1|586785_587061_+	hypothetical protein	NA	A7J2B2	Streptococcus_phage	100.0	2.6e-41
AYJ02109.1|587057_587285_+|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	5.8e-31
AYJ02110.1|587400_588606_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	83.3	1.6e-204
AYJ02111.1|588673_589381_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
AYJ02112.1|589491_590250_-	DNAse	NA	NA	NA	NA	NA
AYJ02113.1|590561_591980_+	dipeptidase	NA	NA	NA	NA	NA
AYJ02114.1|592131_593679_+	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
AYJ02115.1|595396_596119_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYJ02116.1|596138_597338_+	SIS domain-containing protein	NA	NA	NA	NA	NA
AYJ02117.1|597435_597696_-	50S ribosomal protein L31 type B	NA	NA	NA	NA	NA
AYJ02118.1|597810_598752_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
AYJ02119.1|599145_599595_+	flavodoxin	NA	NA	NA	NA	NA
AYJ02120.1|599770_600055_+	chorismate mutase	NA	NA	NA	NA	NA
AYJ02121.1|600047_601310_+	voltage-gated chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.0	1.1e-94
AYJ02122.1|601424_601772_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AYJ02123.1|602134_603211_-|integrase	site-specific integrase	integrase	Q0R5B4	Streptococcus_phage	41.2	7.5e-68
AYJ02124.1|603329_603851_-	hypothetical protein	NA	Q938N8	Temperate_phage	97.7	7.5e-66
AYJ02125.1|603861_604239_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1P8VVK5	Streptococcus_phage	77.6	1.6e-54
AYJ02126.1|604222_604582_-	XRE family transcriptional regulator	NA	A0A1P8VVN3	Streptococcus_phage	95.0	1.7e-56
AYJ02127.1|604769_604988_+	XRE family transcriptional regulator	NA	A0A1P8VVR5	Streptococcus_phage	97.2	5.9e-33
AYJ02128.1|605087_605318_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02129.1|605454_605673_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02130.1|605674_605917_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02131.1|605900_607220_+	chromosome segregation protein SMC	NA	A0A097BY67	Enterococcus_phage	63.7	3.5e-152
AYJ02132.1|607234_608317_+	hypothetical protein	NA	A0A0K2CZH1	Paenibacillus_phage	53.3	2.5e-103
AYJ02133.1|608511_609105_+	hypothetical protein	NA	A0A097BY29	Enterococcus_phage	43.5	1.7e-29
AYJ02134.1|609104_610688_+	DEAD/DEAH box helicase	NA	A0A097BY72	Enterococcus_phage	77.8	2.0e-234
AYJ02135.1|610700_610895_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02136.1|610917_613161_+	DNA primase	NA	Q5YA88	Bacillus_phage	63.7	4.7e-282
AYJ02137.1|613452_613635_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02138.1|613627_614023_+	RusA family crossover junction endodeoxyribonuclease	NA	Q5YA86	Bacillus_phage	58.8	1.8e-40
AYJ02139.1|614019_614244_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02140.1|614246_614432_+	hypothetical protein	NA	A3F626	Streptococcus_phage	82.9	6.6e-09
AYJ02141.1|614428_614680_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02142.1|614663_615068_+	hypothetical protein	NA	A3F627	Streptococcus_phage	65.2	1.6e-39
AYJ02143.1|615064_615349_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	89.4	1.4e-37
AYJ02144.1|615350_615983_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	2.3e-85
AYJ02145.1|615985_616696_+	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	46.2	3.0e-25
AYJ02146.1|616692_617064_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02147.1|617331_617769_+	DUF1492 domain-containing protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	99.3	1.4e-76
AYJ02148.1|617832_618051_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02149.1|618125_618389_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02150.1|618363_618549_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02151.1|618625_619144_+	chromosome partitioning protein ParB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
618597:618614	attR	TTTTTATTATGTAAAAAA	NA	NA	NA	NA
AYJ02152.1|619122_619800_+	hypothetical protein	NA	Q938L6	Temperate_phage	100.0	8.7e-131
AYJ03330.1|619922_620192_+	hypothetical protein	NA	B5SP24	Lactococcus_phage	51.1	2.8e-16
AYJ02153.1|620252_620630_+	ASCH domain-containing protein	NA	Q938L5	Temperate_phage	100.0	1.7e-67
AYJ03331.1|620680_621154_+	hypothetical protein	NA	Q938L4	Temperate_phage	98.7	7.3e-76
AYJ02154.1|621236_622448_+|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
AYJ02155.1|622461_623964_+|portal	phage portal protein	portal	Q938L2	Temperate_phage	100.0	5.4e-282
AYJ02156.1|623968_625447_+|capsid	capsid protein	capsid	Q938L1	Temperate_phage	100.0	8.2e-275
AYJ02157.1|625418_625658_+	hypothetical protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
AYJ02158.1|625719_625986_+	hypothetical protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
AYJ02159.1|626111_626726_+	hypothetical protein	NA	Q938K8	Temperate_phage	100.0	1.3e-96
AYJ02160.1|626729_627548_+|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	100.0	4.0e-146
AYJ02161.1|627601_628018_+	hypothetical protein	NA	Q938K7	Temperate_phage	100.0	1.1e-56
AYJ02162.1|628007_628340_+|capsid	minor capsid protein	capsid	Q79S86	Temperate_phage	100.0	9.6e-59
AYJ02163.1|628339_628696_+|capsid	capsid protein	capsid	Q79S88	Temperate_phage	100.0	4.5e-62
AYJ02164.1|628692_629088_+|capsid	capsid protein	capsid	Q79S87	Temperate_phage	100.0	6.1e-68
AYJ02165.1|629091_629577_+|tail	phage tail protein	tail	Q938K6	Temperate_phage	100.0	1.6e-86
AYJ02166.1|629615_630050_+	hypothetical protein	NA	Q938K5	Temperate_phage	100.0	2.6e-72
AYJ02167.1|630053_630635_+	hypothetical protein	NA	Q938K4	Temperate_phage	99.5	4.9e-106
AYJ02168.1|630624_633885_+	tape measure domain-containing protein	NA	Q938K3	Temperate_phage	99.4	0.0e+00
AYJ02169.1|633881_634598_+|tail	phage tail protein	tail	Q938K2	Temperate_phage	100.0	2.9e-137
AYJ02170.1|634594_636742_+	peptidase	NA	Q938K1	Temperate_phage	95.5	0.0e+00
AYJ02171.1|636738_637953_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
AYJ02172.1|637939_638269_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02173.1|638279_640169_+	hyaluronidase	NA	Q938J9	Temperate_phage	75.6	1.4e-189
AYJ02174.1|640180_640609_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
AYJ02175.1|640611_641244_+	hypothetical protein	NA	Q938J7	Temperate_phage	49.5	2.0e-44
AYJ02176.1|641255_641528_+	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
AYJ02177.1|641524_641752_+|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	7.6e-31
AYJ02178.1|641867_643076_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	87.3	1.1e-213
AYJ02179.1|643185_644172_-	deoxyribonuclease	NA	A7J2B8	Streptococcus_phage	99.7	5.2e-169
AYJ02180.1|644404_644584_+	Paratox	NA	A3F673	Streptococcus_phage	77.6	3.4e-18
AYJ03332.1|645439_646000_+	HAD family hydrolase	NA	NA	NA	NA	NA
AYJ02181.1|646000_647953_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	46.3	6.8e-144
AYJ02182.1|648320_650045_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
AYJ02183.1|650176_650635_-	DUF1694 domain-containing protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
AYJ02184.1|650861_652169_+	enolase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
AYJ03333.1|655996_660319_+	DUF1542 domain-containing protein	NA	NA	NA	NA	NA
AYJ02185.1|661184_661346_+|bacteriocin	streptolysin S family bacteriocin	bacteriocin	NA	NA	NA	NA
AYJ02186.1|661567_662518_+	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA	NA
AYJ02187.1|662514_663573_+	streptolysin associated protein SagC	NA	NA	NA	NA	NA
AYJ02188.1|663592_664951_+	streptolysin associated protein SagD	NA	NA	NA	NA	NA
AYJ02189.1|664925_665597_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYJ02190.1|665593_666277_+	streptolysin associated protein SagF	NA	NA	NA	NA	NA
AYJ02191.1|666299_667223_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
AYJ02192.1|667231_668359_+	ABC transporter permease	NA	NA	NA	NA	NA
AYJ02193.1|668355_669474_+	ABC transporter permease	NA	NA	NA	NA	NA
AYJ02194.1|669585_669804_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02195.1|670045_672778_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AYJ02196.1|673055_673556_+	queuosine transporter QueT	NA	E7DN70	Pneumococcus_phage	31.8	5.4e-05
AYJ02197.1|673748_675707_+	DNA ligase (NAD(+)) LigA	NA	A0A0K2QQN8	Ralstonia_phage	34.9	5.8e-103
AYJ02198.1|675720_676743_+	YegS/Rv2252/BmrU family lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	6.1e-19
AYJ02199.1|677150_677348_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AYJ02200.1|677382_678099_+	ATP synthase subunit A	NA	NA	NA	NA	NA
AYJ02201.1|678116_678611_+	ATP synthase subunit B	NA	NA	NA	NA	NA
AYJ02202.1|678610_679147_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
AYJ02203.1|679162_680671_+	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AYJ02204.1|680686_681562_+	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AYJ02205.1|681723_683130_+	ATP synthase subunit beta	NA	NA	NA	NA	NA
AYJ02206.1|683142_683559_+	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AYJ02207.1|683824_684082_+	DUF1146 domain-containing protein	NA	NA	NA	NA	NA
AYJ02208.1|684146_685418_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AYJ02209.1|685421_685610_+	DNA-directed RNA polymerase subunit beta	NA	NA	NA	NA	NA
AYJ02210.1|686792_687836_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.6e-30
AYJ02211.1|688045_690451_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 4
CP031770	Streptococcus pyogenes strain SASM4-Duke chromosome, complete genome	1903997	727184	737788	1903997		Streptococcus_phage(57.14%)	9	NA	NA
AYJ02245.1|727184_729395_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
AYJ02246.1|729502_730666_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
AYJ02247.1|730662_731349_+	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
AYJ02248.1|731442_732609_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
AYJ02249.1|732669_733011_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
AYJ02250.1|733232_734585_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
AYJ02251.1|734672_735941_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AYJ02252.1|735970_736411_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02253.1|736645_737788_+	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.1e-24
>prophage 5
CP031770	Streptococcus pyogenes strain SASM4-Duke chromosome, complete genome	1903997	798807	867037	1903997	integrase,protease,capsid,tail,tRNA,holin	Streptococcus_pyogenes_phage(52.63%)	72	846917:846962	867205:867250
AYJ02307.1|798807_800037_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
AYJ02308.1|800046_800646_+	GTP-binding protein	NA	NA	NA	NA	NA
AYJ02309.1|801595_803695_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.2	5.1e-121
AYJ02310.1|804072_804756_+	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
AYJ02311.1|804832_806044_+	phosphopentomutase	NA	NA	NA	NA	NA
AYJ02312.1|806062_806503_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	4.4e-35
AYJ02313.1|806486_807296_+	purine-nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	42.2	5.1e-53
AYJ02314.1|807958_808672_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
AYJ02315.1|808664_809453_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
AYJ02316.1|809532_810438_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYJ02317.1|810659_811196_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02318.1|811472_812165_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
AYJ02319.1|812222_812852_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
AYJ02320.1|813048_814503_+	amidase	NA	NA	NA	NA	NA
AYJ02321.1|814584_815484_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYJ02322.1|815512_816163_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYJ02323.1|816295_816949_+	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	39.7	1.5e-39
AYJ02324.1|817080_818349_+	dihydroorotase	NA	NA	NA	NA	NA
AYJ02325.1|818406_819048_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
AYJ02326.1|819179_821132_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	7.3e-122
AYJ02327.1|821222_823682_+	DNA topoisomerase 4 subunit A	NA	G3M9Z5	Bacillus_virus	33.1	1.4e-98
AYJ02328.1|823759_824827_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AYJ03338.1|826445_826676_+	DUF2969 domain-containing protein	NA	NA	NA	NA	NA
AYJ02329.1|827064_828270_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AYJ02330.1|828817_829120_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02331.1|829321_830308_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
AYJ02332.1|830378_830570_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02333.1|830618_831038_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYJ02334.1|831274_832183_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AYJ02335.1|832300_832477_-	DUF3042 family protein	NA	NA	NA	NA	NA
AYJ02336.1|832610_833510_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AYJ02337.1|833582_834821_+	GTPase HflX	NA	NA	NA	NA	NA
AYJ02338.1|834813_835449_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AYJ02339.1|835463_836393_+	ribonuclease Z	NA	NA	NA	NA	NA
AYJ02340.1|836392_837157_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYJ02341.1|837153_839364_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.0	1.5e-70
AYJ02342.1|839514_840033_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.4	3.9e-30
AYJ02343.1|840113_840797_+	DnaD domain protein	NA	Q938N2	Temperate_phage	36.8	2.2e-09
AYJ02344.1|840793_841450_+	endonuclease III	NA	NA	NA	NA	NA
AYJ02345.1|841521_842208_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AYJ02346.1|842197_842986_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AYJ02347.1|843025_844132_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AYJ02348.1|844189_845059_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
AYJ02349.1|845058_845652_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
AYJ02350.1|845895_846936_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
846917:846962	attL	CTCAAGAAGTGATTAAATAAAACATTAAAGAGCCTTGTCATATCAA	NA	NA	NA	NA
AYJ02351.1|847018_847954_-|integrase	site-specific integrase	integrase	A1EAB7	Streptococcus_phage	53.4	3.2e-91
AYJ02352.1|848100_848421_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	100.0	2.0e-53
AYJ02353.1|848404_848761_+	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	100.0	5.0e-61
AYJ02354.1|848757_849009_+	hypothetical protein	NA	A0A1P8VVV4	Streptococcus_phage	100.0	4.3e-43
AYJ02355.1|849245_850136_+|capsid	phage capsid protein	capsid	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
AYJ02356.1|850147_850441_+	hypothetical protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	99.0	1.3e-46
AYJ02357.1|850454_850799_+	hypothetical protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	98.2	5.7e-54
AYJ02358.1|850795_851107_+	hypothetical protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	94.2	4.6e-47
AYJ02359.1|851103_851499_+	hypothetical protein	NA	A0A097PAT9	Streptococcus_pyogenes_phage	93.0	1.8e-56
AYJ02360.1|851500_851911_+	DUF5072 domain-containing protein	NA	A0A097PAW5	Streptococcus_pyogenes_phage	99.3	1.8e-70
AYJ02361.1|851922_852180_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	89.0	5.2e-28
AYJ02362.1|852192_852483_+	hypothetical protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	95.3	7.4e-39
AYJ03339.1|852832_854017_+	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	93.9	3.1e-168
AYJ02363.1|854017_855502_+|tail	phage tail protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	98.8	1.8e-290
AYJ02364.1|855502_858952_+	CHAP domain-containing protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	98.9	0.0e+00
AYJ02365.1|858956_860819_+	hypothetical protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.8	0.0e+00
AYJ02366.1|860829_861177_+	DUF1366 domain-containing protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
AYJ02367.1|861326_861650_+	hypothetical protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
AYJ02368.1|861649_861982_+|holin	phage holin	holin	A0A097PBF6	Streptococcus_pyogenes_phage	100.0	5.7e-51
AYJ02369.1|861983_862748_+	CHAP domain-containing protein	NA	A0A097PAT3	Streptococcus_pyogenes_phage	100.0	1.5e-150
AYJ02370.1|862759_863362_+	hypothetical protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
AYJ02371.1|863372_864146_+	hypothetical protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	94.6	4.6e-128
AYJ02372.1|864155_864377_+	hypothetical protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
AYJ02373.1|864376_865036_+	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	96.3	6.3e-118
AYJ02374.1|865104_865539_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02375.1|865810_866617_-	deoxyribonuclease	NA	NA	NA	NA	NA
AYJ02376.1|866848_867037_+	Paratox	NA	A3F673	Streptococcus_phage	73.3	6.1e-18
867205:867250	attR	CTCAAGAAGTGATTAAATAAAACATTAAAGAGCCTTGTCATATCAA	NA	NA	NA	NA
>prophage 6
CP031770	Streptococcus pyogenes strain SASM4-Duke chromosome, complete genome	1903997	1205034	1275430	1903997	terminase,protease,capsid,tail,tRNA,holin,portal	Streptococcus_phage(58.54%)	73	NA	NA
AYJ02678.1|1205034_1205730_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYJ02679.1|1205748_1206510_-	DUF3169 family protein	NA	NA	NA	NA	NA
AYJ02680.1|1206506_1206722_-	transcriptional regulator	NA	NA	NA	NA	NA
AYJ02681.1|1207081_1209700_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	1.9e-61
AYJ02682.1|1210086_1211142_-	foldase	NA	NA	NA	NA	NA
AYJ02683.1|1211204_1211912_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.6	8.8e-09
AYJ02684.1|1211977_1213174_-	MFS transporter	NA	NA	NA	NA	NA
AYJ02685.1|1213549_1215355_-	oligoendopeptidase F	NA	NA	NA	NA	NA
AYJ02686.1|1215367_1216330_-	competence protein CoiA	NA	NA	NA	NA	NA
AYJ02687.1|1216624_1217341_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AYJ02688.1|1217459_1218164_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
AYJ02689.1|1218365_1219394_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AYJ02690.1|1219400_1220621_+	DUF3114 domain-containing protein	NA	NA	NA	NA	NA
AYJ02691.1|1220734_1221325_-	peptidase S11	NA	NA	NA	NA	NA
AYJ02692.1|1221321_1221570_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02693.1|1221938_1222544_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
AYJ02694.1|1222640_1223681_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
AYJ02695.1|1223751_1225995_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	1.8e-55
AYJ02696.1|1225975_1226638_-	ComEA family DNA-binding protein	NA	NA	NA	NA	NA
AYJ02697.1|1226837_1227656_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AYJ03347.1|1227695_1228472_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
AYJ02698.1|1228461_1228740_+	GIY-YIG nuclease family protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	1.8e-05
AYJ02699.1|1230892_1232512_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
AYJ02700.1|1232818_1234363_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.1	1.1e-35
AYJ03348.1|1234316_1234541_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ02701.1|1234610_1235306_-	TIGR02206 family membrane protein	NA	NA	NA	NA	NA
AYJ02702.1|1235385_1236777_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
AYJ02703.1|1236974_1238021_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AYJ02704.1|1238121_1238718_-	recombination protein RecR	NA	NA	NA	NA	NA
AYJ02705.1|1238764_1238956_-	penicillin-binding protein	NA	NA	NA	NA	NA
AYJ02706.1|1239515_1240295_-	formate dehydrogenase	NA	NA	NA	NA	NA
AYJ02707.1|1240418_1240961_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02708.1|1241121_1241643_-	transcription repressor NadR	NA	NA	NA	NA	NA
AYJ02709.1|1241750_1242446_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
AYJ02710.1|1242684_1243620_+	dihydroorotate dehydrogenase	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
AYJ02711.1|1243919_1245782_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	7.0e-90
AYJ02712.1|1246312_1246495_-	Paratox	NA	A3F673	Streptococcus_phage	75.0	5.3e-19
AYJ02713.1|1246607_1247390_-	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.8	4.3e-49
AYJ02714.1|1247637_1248762_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	49.1	3.1e-93
AYJ02715.1|1248897_1250115_-|holin	holin	holin	A0A1P8VVM5	Streptococcus_phage	60.1	1.4e-163
AYJ02716.1|1250233_1250461_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
AYJ02717.1|1250457_1250730_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
AYJ02718.1|1250741_1251374_-	hypothetical protein	NA	Q938J7	Temperate_phage	50.5	4.0e-45
AYJ02719.1|1251376_1251805_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	87.9	3.7e-63
AYJ02720.1|1251813_1253595_-	hypothetical protein	NA	Q938J9	Temperate_phage	40.2	1.5e-65
AYJ02721.1|1253609_1254725_-	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	66.6	4.8e-110
AYJ02722.1|1254721_1256683_-	peptidase	NA	M1PKG3	Streptococcus_phage	49.0	2.4e-96
AYJ02723.1|1256679_1257375_-	hypothetical protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
AYJ02724.1|1257371_1259729_-	hypothetical protein	NA	M1NRG5	Streptococcus_phage	50.3	2.6e-134
AYJ02725.1|1259728_1260100_-	hypothetical protein	NA	M1PL84	Streptococcus_phage	59.2	1.2e-33
AYJ02726.1|1260114_1260378_-	hypothetical protein	NA	A0A0B5A2F3	Streptococcus_phage	54.7	1.7e-18
AYJ03349.1|1260388_1260967_-|tail	phage tail protein	tail	A0A1X9I5X2	Streptococcus_phage	62.9	2.9e-58
AYJ02727.1|1261090_1261426_-	hypothetical protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	1.7e-34
AYJ02728.1|1261426_1261663_-	hypothetical protein	NA	A0A1P8BMT2	Lactococcus_phage	66.7	2.5e-21
AYJ02729.1|1261952_1262375_-	hypothetical protein	NA	A0A0B5A2F6	Streptococcus_phage	67.2	8.2e-47
AYJ02730.1|1262384_1262585_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02731.1|1262584_1263496_-|capsid	phage major capsid protein	capsid	M1PFL0	Streptococcus_phage	67.0	2.2e-113
AYJ02732.1|1263520_1263982_-	DUF4355 domain-containing protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
AYJ02733.1|1264061_1265477_-|terminase	terminase	terminase	A0A0B5A091	Streptococcus_phage	74.6	2.0e-214
AYJ02734.1|1265796_1266063_-	hypothetical protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
AYJ02735.1|1266114_1266339_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02736.1|1266344_1267838_-	hypothetical protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
AYJ02737.1|1267830_1269099_-|portal	phage portal protein	portal	M1PFL4	Streptococcus_phage	75.6	2.2e-188
AYJ02738.1|1269095_1269452_-	hypothetical protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
AYJ02739.1|1269599_1269944_-	HNH endonuclease	NA	M1Q0W7	Streptococcus_phage	69.4	3.2e-41
AYJ02740.1|1270051_1270471_-	DUF1492 domain-containing protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	6.7e-57
AYJ02741.1|1270979_1271309_-	hypothetical protein	NA	J7KGX3	Streptococcus_phage	84.4	7.1e-46
AYJ02742.1|1271364_1271571_-	hypothetical protein	NA	NA	NA	NA	NA
AYJ02743.1|1271579_1271720_-	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
AYJ02744.1|1272816_1273092_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
AYJ02745.1|1273190_1273778_-	DUF2140 family protein	NA	NA	NA	NA	NA
AYJ02746.1|1273755_1274616_-	GDSL family lipase	NA	NA	NA	NA	NA
AYJ03350.1|1274590_1275430_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 7
CP031770	Streptococcus pyogenes strain SASM4-Duke chromosome, complete genome	1903997	1826074	1846240	1903997	holin,integrase	Streptococcus_phage(56.25%)	26	1829273:1829293	1843541:1843561
AYJ03227.1|1826074_1827295_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.3	1.6e-05
AYJ03364.1|1827305_1829288_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	2.3e-62
1829273:1829293	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
AYJ03365.1|1829382_1830528_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
AYJ03228.1|1830782_1830926_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AYJ03229.1|1831787_1832555_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
AYJ03230.1|1832708_1832915_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
AYJ03231.1|1832948_1833149_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
AYJ03232.1|1833169_1833577_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
AYJ03233.1|1833988_1834516_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
AYJ03234.1|1834742_1834937_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AYJ03235.1|1835136_1835328_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AYJ03236.1|1835468_1835921_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ03237.1|1836022_1836355_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ03366.1|1836354_1836546_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ03238.1|1836557_1836887_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ03239.1|1836889_1837162_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
AYJ03240.1|1837162_1838029_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
AYJ03241.1|1838040_1839435_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
AYJ03242.1|1839728_1839983_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ03243.1|1839979_1840153_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
AYJ03244.1|1840333_1840843_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
AYJ03245.1|1840916_1841405_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
AYJ03246.1|1841804_1842167_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
AYJ03247.1|1842141_1842519_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
AYJ03248.1|1842655_1843288_+	hypothetical protein	NA	NA	NA	NA	NA
AYJ03249.1|1843684_1846240_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	23.3	6.8e-43
1843541:1843561	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
