The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	135821	215688	4184648	transposase,capsid,tRNA,portal,integrase,protease,head,tail,plate,holin,terminase	uncultured_Caudovirales_phage(27.27%)	90	145281:145296	160349:160364
AYK55847.1|135821_136298_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AYK55848.1|136278_136968_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AYK55849.1|136977_137433_+	ribosomal-protein-alanine N-acetyltransferase RimI	NA	NA	NA	NA	NA
AYK55850.1|137425_138466_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	43.9	8.8e-66
AYK55851.1|138705_140634_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.5	1.4e-56
AYK55852.1|140759_141272_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AYK55853.1|141268_141916_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
AYK55854.1|141937_142111_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
AYK55855.1|142117_142882_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	30.8	1.5e-22
AYK55856.1|143113_143305_-	lipoprotein	NA	NA	NA	NA	NA
AYK55857.1|143301_144036_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYK55858.1|144274_144559_+	co-chaperone GroES	NA	A0A221S3C8	uncultured_virus	51.6	2.2e-19
AYK55859.1|144605_146240_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	57.7	3.7e-159
145281:145296	attL	ACAAACATTCAAGAAA	NA	NA	NA	NA
AYK55860.1|146329_147529_-|integrase	site-specific integrase	integrase	S6C485	Thermus_phage	46.3	4.1e-83
AYK55861.1|147545_148052_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	69.9	2.6e-63
AYK55862.1|148455_148821_-	XRE family transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	48.7	1.4e-21
AYK55863.1|148955_149192_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYK55864.1|149204_149519_+	hypothetical protein	NA	A0A2H4JDL0	uncultured_Caudovirales_phage	45.3	2.4e-11
AYK55865.1|150022_150592_+	XRE family transcriptional regulator	NA	A0A2H4J884	uncultured_Caudovirales_phage	58.5	4.5e-64
AYK55866.1|150588_150846_+	hypothetical protein	NA	A0A2H4J4M9	uncultured_Caudovirales_phage	42.2	2.2e-10
AYK55867.1|150842_151040_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55868.1|151142_151493_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55869.1|151492_151684_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55870.1|151680_152598_+	hypothetical protein	NA	A0A0A7RUE9	Clostridium_phage	62.5	4.7e-87
AYK55871.1|152617_153355_+	hypothetical protein	NA	A0A0A7RVR3	Clostridium_phage	44.9	2.3e-52
AYK55872.1|153354_153543_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55873.1|153551_154244_+	DnaD domain protein	NA	A0A1L2JY26	Aeribacillus_phage	41.0	2.1e-07
AYK55874.1|154164_154980_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	48.5	1.8e-61
AYK55875.1|155210_155639_+	RusA family crossover junction endodeoxyribonuclease	NA	S6B1L9	Thermus_phage	64.5	6.6e-44
AYK55876.1|155719_155926_+	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	75.4	2.1e-19
AYK55877.1|155957_156242_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55878.1|156238_156487_+	hypothetical protein	NA	A0A2H4JA61	uncultured_Caudovirales_phage	42.3	7.8e-05
AYK55879.1|156736_157102_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55880.1|157115_158318_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55881.1|158571_158757_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55882.1|158777_159239_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4J4R7	uncultured_Caudovirales_phage	46.0	4.1e-23
AYK55883.1|159521_159836_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55884.1|160236_160602_+	HNH endonuclease	NA	A0A1U7Q1S7	Geobacillus_virus	55.0	9.4e-31
160349:160364	attR	ACAAACATTCAAGAAA	NA	NA	NA	NA
AYK55885.1|160829_161345_+|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	43.4	2.8e-33
AYK55886.1|161341_163051_+|terminase	terminase large subunit	terminase	A0A0S2GLF0	Bacillus_phage	62.5	6.0e-205
AYK55887.1|163063_163255_+	DUF1056 family protein	NA	NA	NA	NA	NA
AYK55888.1|163255_164563_+|portal	phage portal protein	portal	D6R3Y6	Bacillus_phage	46.4	9.3e-105
AYK55889.1|164510_165248_+|protease	Clp protease ClpP	protease	A0A2I7SCY8	Paenibacillus_phage	57.1	2.6e-56
AYK55890.1|165287_166574_+|capsid	phage major capsid protein	capsid	A0A288WG01	Bacillus_phage	45.2	2.7e-80
AYK55891.1|166600_167053_+	collagen-like protein	NA	D6R3Z0	Bacillus_phage	57.1	1.3e-10
AYK55892.1|167070_167373_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0S2GLH6	Bacillus_phage	46.3	4.7e-12
AYK55893.1|167362_167677_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JCB1	uncultured_Caudovirales_phage	37.3	1.3e-12
AYK55894.1|167676_168075_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55895.1|168071_168464_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
AYK55896.1|168478_169093_+|tail	phage tail protein	tail	J7KKC8	Streptococcus_phage	35.1	3.7e-11
AYK55897.1|169157_169535_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55898.1|169734_174222_+|tail	phage tail tape measure protein	tail	A6M961	Geobacillus_virus	41.5	1.2e-66
AYK55899.1|174215_175055_+|tail	phage tail family protein	tail	D6R3Z9	Bacillus_phage	58.6	3.4e-92
AYK55900.1|175069_176773_+	alkaline phosphatase	NA	D6R400	Bacillus_phage	55.5	4.3e-179
AYK55901.1|176824_178381_+	hypothetical protein	NA	M4ZSB3	Bacillus_phage	82.9	1.5e-250
AYK55902.1|178417_179539_+|plate	phage baseplate upper protein	plate	M4ZRP1	Bacillus_phage	92.5	7.5e-196
AYK55903.1|179554_179854_+	hypothetical protein	NA	M4ZR44	Bacillus_phage	79.2	2.0e-39
AYK55904.1|179850_180021_+	XkdX family protein	NA	NA	NA	NA	NA
AYK55905.1|180072_180285_+	hypothetical protein	NA	A0A290GDY2	Caldibacillus_phage	59.4	1.9e-15
AYK55906.1|180299_180563_+|holin	phage holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	66.7	2.1e-24
AYK55907.1|180620_181589_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	67.4	1.0e-63
AYK55908.1|181622_182039_-	hypothetical protein	NA	A0A2H4J4V0	uncultured_Caudovirales_phage	57.2	6.7e-41
AYK55909.1|182050_183670_-	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	59.7	4.3e-75
AYK55910.1|183915_184575_-	hypothetical protein	NA	Q9AZW5	Lactococcus_phage	32.9	6.7e-11
AYK55911.1|184739_185222_-	hypothetical protein	NA	NA	NA	NA	NA
AYK55912.1|185778_186009_+	DNA-binding protein	NA	NA	NA	NA	NA
AYK55913.1|187632_188067_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55914.1|188072_188792_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55915.1|188810_188999_-	hypothetical protein	NA	A0A2H4J4T3	uncultured_Caudovirales_phage	58.3	3.1e-14
AYK55916.1|189862_190087_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59663.1|190232_191780_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
AYK55917.1|191776_192535_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	38.6	5.8e-43
AYK55918.1|192866_193886_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55919.1|194484_195093_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55920.1|195223_196348_+|transposase	IS4-like element IS4Bsu1 family transposase	transposase	NA	NA	NA	NA
AYK55921.1|196394_196937_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55922.1|196953_198177_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55923.1|198367_200872_-	transcriptional regulator	NA	NA	NA	NA	NA
AYK55924.1|201073_202135_+	sorbitol dehydrogenase	NA	NA	NA	NA	NA
AYK55925.1|202208_203600_+	MFS transporter	NA	NA	NA	NA	NA
AYK55926.1|203694_204657_+	carbohydrate kinase	NA	NA	NA	NA	NA
AYK55927.1|204852_205536_+	PspA/IM30 family protein	NA	NA	NA	NA	NA
AYK55928.1|205601_206627_+	TFIIB-type zinc ribbon-containing protein	NA	NA	NA	NA	NA
AYK55929.1|206626_207391_+	YgcG family protein	NA	NA	NA	NA	NA
AYK55930.1|207421_208393_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55931.1|210047_211469_+	MFS transporter	NA	NA	NA	NA	NA
AYK55932.1|211516_212557_-	(R,R)-butanediol dehydrogenase	NA	NA	NA	NA	NA
AYK55933.1|212993_213365_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55934.1|213430_214477_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55935.1|214537_215688_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
>prophage 2
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	236276	305541	4184648	transposase,tRNA,integrase	Erysipelothrix_phage(22.58%)	63	227734:227749	280482:280497
227734:227749	attL	TGAAGAAATTAAAAAA	NA	NA	NA	NA
AYK55952.1|236276_237587_+|integrase	site-specific integrase	integrase	Q38045	Staphylococcus_phage	26.8	4.3e-17
AYK55953.1|237590_237785_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55954.1|237992_238526_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYK55955.1|238507_239974_+	DUF4179 domain-containing protein	NA	NA	NA	NA	NA
AYK55956.1|240357_241680_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	29.7	3.4e-38
AYK55957.1|241890_242694_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55958.1|242852_243020_+	Fur-regulated basic protein FbpA	NA	NA	NA	NA	NA
AYK55959.1|243233_243788_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AYK55960.1|243787_243985_+	NETI motif-containing protein	NA	NA	NA	NA	NA
AYK55961.1|244307_244796_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.9	8.7e-24
AYK55962.1|244788_245931_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AYK55963.1|245927_247223_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.7	5.9e-19
AYK55964.1|247296_248022_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3G7P8	Synechococcus_phage	44.1	1.2e-45
AYK55965.1|248014_248269_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AYK55966.1|248265_248949_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AYK55967.1|248932_251161_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.1	6.5e-159
AYK55968.1|251136_252567_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	1.2e-52
AYK55969.1|252668_253709_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	42.0	1.7e-64
AYK55970.1|253705_254293_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	41.0	2.4e-28
AYK55971.1|254289_255828_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	52.6	3.0e-78
AYK55972.1|255843_257112_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AYK55973.1|257246_258599_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK55974.1|258730_259150_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AYK55975.1|259293_260568_+	amino acid permease	NA	NA	NA	NA	NA
AYK55976.1|260582_260810_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
AYK55977.1|260938_262681_+	adenine deaminase	NA	NA	NA	NA	NA
AYK55978.1|262707_263703_+	DUF3048 domain-containing protein	NA	NA	NA	NA	NA
AYK55979.1|263705_264020_+	hypothetical protein	NA	NA	NA	NA	NA
AYK55980.1|264054_265632_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA	NA
AYK55981.1|265896_266583_+	geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
AYK55982.1|266643_268863_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.7	7.2e-134
AYK55983.1|268886_270893_+	DNA ligase (NAD(+)) LigA	NA	A0A0K2QQN8	Ralstonia_phage	40.3	3.1e-128
AYK55984.1|270908_272099_+	CamS family sex pheromone protein	NA	NA	NA	NA	NA
AYK55985.1|272215_273365_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
AYK55986.1|273551_274562_+	phosphotransferase enzyme family protein	NA	NA	NA	NA	NA
AYK55987.1|274599_275298_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	37.9	2.7e-18
AYK55988.1|275403_276882_-	sodium:proline symporter	NA	NA	NA	NA	NA
AYK55989.1|277295_277586_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AYK55990.1|277601_279059_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A	tRNA	NA	NA	NA	NA
AYK55991.1|279072_280503_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
280482:280497	attR	TGAAGAAATTAAAAAA	NA	NA	NA	NA
AYK55992.1|280413_280629_-	hypothetical protein	NA	NA	NA	NA	NA
AYK55993.1|280633_281986_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK55994.1|282116_282965_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYK55995.1|283096_286255_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	23.5	5.0e-64
AYK55996.1|286405_287317_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	29.7	1.2e-21
AYK55997.1|287626_289009_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	46.9	1.2e-115
AYK55998.1|289543_291130_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	30.7	4.3e-56
AYK55999.1|291221_291572_-|transposase	transposase	transposase	NA	NA	NA	NA
AYK56000.1|291565_291901_-	hypothetical protein	NA	NA	NA	NA	NA
AYK56001.1|292136_292328_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56002.1|292324_293569_-|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	28.2	6.9e-33
AYK56003.1|293872_295066_+|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	33.3	2.0e-45
AYK56004.1|295065_295827_+	AAA family ATPase	NA	A0A059NT77	Lactococcus_phage	41.1	1.2e-51
AYK56005.1|295946_297431_-	glycosyltransferase	NA	NA	NA	NA	NA
AYK59667.1|297357_297852_+	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	51.4	2.3e-40
AYK56006.1|298381_300250_+	XRE family transcriptional regulator	NA	E4ZFJ9	Streptococcus_phage	29.9	6.2e-78
AYK56007.1|300345_300546_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56008.1|300587_301289_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2K5B267	Erysipelothrix_phage	34.4	4.6e-18
AYK56009.1|301335_301554_+	hypothetical protein	NA	A0A2I4R673	Erysipelothrix_phage	61.1	1.7e-19
AYK56010.1|301528_301852_+	rRNA biogenesis protein rrp5	NA	A0A2K5B2A7	Erysipelothrix_phage	60.6	5.4e-22
AYK56011.1|301844_302993_+	DUF2800 domain-containing protein	NA	A0A2K5B2A8	Erysipelothrix_phage	79.6	1.2e-180
AYK56012.1|302985_303534_+	DUF2815 family protein	NA	A0A2K5B2A9	Erysipelothrix_phage	87.8	7.8e-90
AYK56013.1|303606_305541_+	hypothetical protein	NA	A0A2K5B2B0	Erysipelothrix_phage	74.3	3.9e-293
>prophage 3
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	317560	374907	4184648	transposase,coat	Enterobacteria_phage(11.11%)	48	NA	NA
AYK56024.1|317560_317989_+|coat	spore coat protein	coat	NA	NA	NA	NA
AYK56025.1|318105_318690_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYK56026.1|318768_319212_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AYK56027.1|319208_320057_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AYK56028.1|320202_320451_+	protein CotJA	NA	NA	NA	NA	NA
AYK56029.1|320434_320698_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
AYK56030.1|320712_321282_+|coat	spore coat protein CotJC	coat	NA	NA	NA	NA
AYK56031.1|321406_321949_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYK56032.1|321971_322274_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56033.1|322388_323018_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
AYK56034.1|323014_324748_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.5	1.5e-22
AYK56035.1|324747_325854_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AYK56036.1|325958_327242_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK56037.1|327238_328168_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AYK56038.1|328925_330764_+	rhamnogalacturonan lyase	NA	NA	NA	NA	NA
AYK56039.1|330922_331576_+	rhamnogalacturonan acetylesterase	NA	NA	NA	NA	NA
AYK56040.1|336272_337781_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
AYK56041.1|337835_338792_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AYK56042.1|338805_339693_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AYK56043.1|339701_341045_+	alpha-glucosidase/alpha-galactosidase	NA	NA	NA	NA	NA
AYK56044.1|341119_341815_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
AYK56045.1|342987_344235_+|transposase	IS256-like element ISBsu2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	22.6	2.6e-24
AYK56046.1|344519_344846_-	heme-degrading monooxygenase HmoA	NA	NA	NA	NA	NA
AYK56047.1|345402_345846_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59668.1|346005_346914_+	STAS domain-containing protein	NA	NA	NA	NA	NA
AYK56048.1|347068_347236_+	DUF2292 domain-containing protein	NA	NA	NA	NA	NA
AYK56049.1|347345_347990_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
AYK56050.1|347989_348982_+	DMT family transporter	NA	NA	NA	NA	NA
AYK59669.1|349165_349300_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYK56051.1|349617_350806_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.6	1.6e-31
AYK56052.1|350863_351934_-	DUF3900 domain-containing protein	NA	NA	NA	NA	NA
AYK56053.1|352083_355269_+	cytochrome P450	NA	V5UQK0	Mycobacterium_phage	37.5	3.0e-80
AYK59670.1|355715_357635_+	Lipoteichoic acid synthase 1	NA	W6LM83	Streptococcus_phage	43.5	1.0e-128
AYK56054.1|357870_358635_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYK56055.1|358641_359610_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A2K9L0I7	Tupanvirus	29.3	1.1e-30
AYK56056.1|359633_360545_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56057.1|360573_361752_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AYK56058.1|361752_362688_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56059.1|362717_363947_-	MFS transporter	NA	NA	NA	NA	NA
AYK56060.1|364058_364766_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
AYK56061.1|364857_366243_-	amino acid permease	NA	NA	NA	NA	NA
AYK56062.1|366492_367950_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AYK56063.1|367963_368824_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.0	2.2e-09
AYK56064.1|368958_370848_+	ABC transporter ATP-binding protein	NA	A0A1V0SGN0	Hokovirus	31.9	6.1e-41
AYK56065.1|370970_371417_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56066.1|371541_371964_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AYK56067.1|372029_373220_+	multidrug efflux protein YfmO	NA	NA	NA	NA	NA
AYK56068.1|373757_374907_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
>prophage 4
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	777787	826160	4184648	transposase,coat,tRNA	Planktothrix_phage(44.44%)	57	NA	NA
AYK56448.1|777787_778938_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
AYK56449.1|779115_779295_+	YjzC family protein	NA	NA	NA	NA	NA
AYK56450.1|779341_779527_-	DUF2929 domain-containing protein	NA	NA	NA	NA	NA
AYK56451.1|779775_780510_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56452.1|780591_781149_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56453.1|781239_782193_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK56454.1|782207_782399_+	competence protein ComG	NA	NA	NA	NA	NA
AYK56455.1|782428_782668_-	hypothetical protein	NA	NA	NA	NA	NA
AYK56456.1|782832_783771_+	beta-ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
AYK56457.1|783793_785035_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AYK56458.1|785110_785896_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56459.1|786086_787073_+	oligopeptide transport ATP-binding protein AppD	NA	G9BWD6	Planktothrix_phage	32.9	5.7e-22
AYK56460.1|787069_788059_+	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	9.4e-17
AYK56461.1|788146_789778_+	peptide-binding protein	NA	NA	NA	NA	NA
AYK56462.1|789853_790804_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AYK56463.1|790820_791732_+	ABC transporter permease	NA	NA	NA	NA	NA
AYK59680.1|791937_792690_+	DUF3603 family protein	NA	A0A0A0RP53	Bacillus_phage	43.9	5.4e-49
AYK59681.1|792724_793717_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AYK56464.1|794460_796098_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK56465.1|796205_797141_+	ABC transporter permease	NA	NA	NA	NA	NA
AYK56466.1|797144_798062_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AYK56467.1|798066_799143_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	2.1e-17
AYK56468.1|799144_800062_+	oligopeptide transport ATP-binding protein OppF	NA	G9BWD6	Planktothrix_phage	34.8	1.6e-23
AYK59682.1|800169_801387_+	MFS transporter	NA	NA	NA	NA	NA
AYK56469.1|801550_802129_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYK56470.1|802309_802705_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
AYK56471.1|802747_803404_-	TerC family protein	NA	A0A2R2YAT9	Pseudomonas_phage	38.0	1.1e-29
AYK56472.1|803573_803714_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56473.1|803680_804337_+	adaptor protein MecA	NA	NA	NA	NA	NA
AYK56474.1|804331_804454_-	hypothetical protein	NA	NA	NA	NA	NA
AYK56475.1|804497_805649_+	competence protein CoiA	NA	NA	NA	NA	NA
AYK56476.1|805695_807708_+	oligoendopeptidase F	NA	NA	NA	NA	NA
AYK56477.1|807745_807913_-	hypothetical protein	NA	NA	NA	NA	NA
AYK56478.1|808008_808209_-	hypothetical protein	NA	NA	NA	NA	NA
AYK56479.1|808227_809127_-	DsbA family protein	NA	NA	NA	NA	NA
AYK56480.1|809123_809522_-	group 2 truncated hemoglobin YjbI	NA	NA	NA	NA	NA
AYK59683.1|809776_810322_-	lytic transglycosylase domain-containing protein	NA	A0A1P8CWQ1	Bacillus_phage	73.7	5.1e-41
AYK56481.1|810525_811098_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
AYK56482.1|811222_811591_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56483.1|811619_812255_+	GTP pyrophosphokinase YjbM	NA	NA	NA	NA	NA
AYK56484.1|812273_813074_+	NAD(+) kinase	NA	NA	NA	NA	NA
AYK59684.1|813136_813988_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AYK56485.1|814000_814735_-	bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetrical]	NA	A8E2N0	Enterococcus_phage	24.8	7.2e-06
AYK56486.1|814970_816815_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AYK56487.1|817063_817774_+	thiaminase II	NA	NA	NA	NA	NA
AYK56488.1|817748_818366_+	thiazole tautomerase TenI	NA	NA	NA	NA	NA
AYK56489.1|818349_819459_+	glycine oxidase ThiO	NA	NA	NA	NA	NA
AYK59685.1|819458_819659_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
AYK56490.1|819655_820426_+	thiazole synthase	NA	NA	NA	NA	NA
AYK56491.1|820422_821433_+	thiazole biosynthesis adenylyltransferase ThiF	NA	NA	NA	NA	NA
AYK56492.1|821451_822267_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AYK56493.1|822402_823179_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AYK56494.1|823279_823963_+|coat	spore coat protein	coat	NA	NA	NA	NA
AYK56495.1|824055_824505_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK56496.1|824632_825121_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK56497.1|825272_825755_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK56498.1|825839_826160_-|coat	spore coat protein	coat	NA	NA	NA	NA
>prophage 5
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	865843	975856	4184648	transposase,coat,tRNA,portal,protease,tail,plate,holin,terminase	uncultured_Caudovirales_phage(24.44%)	116	NA	NA
AYK56536.1|865843_867091_+|transposase	IS256-like element ISBsu2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	22.6	2.6e-24
AYK56537.1|867162_867669_-	N-acetyltransferase	NA	NA	NA	NA	NA
AYK56538.1|867887_868283_-	hypothetical protein	NA	NA	NA	NA	NA
AYK56539.1|868511_868991_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AYK56540.1|869030_869225_-	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
AYK56541.1|869356_869686_-	DUF4306 domain-containing protein	NA	NA	NA	NA	NA
AYK56542.1|870092_870287_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59687.1|870305_871295_-	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
AYK56543.1|871417_871666_-|coat	spore coat protein CotT	coat	NA	NA	NA	NA
AYK56544.1|871919_873323_+	peptidoglycan-N-acetylmuramic acid deacetylase PdaC	NA	NA	NA	NA	NA
AYK56545.1|873362_873836_-	DUF2690 domain-containing protein	NA	NA	NA	NA	NA
AYK56546.1|873960_874128_-	putative motility protein	NA	NA	NA	NA	NA
AYK56547.1|874253_875153_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59688.1|875162_875561_-	DUF2809 domain-containing protein	NA	NA	NA	NA	NA
AYK56548.1|875661_876237_-	DUF4309 domain-containing protein	NA	NA	NA	NA	NA
AYK56549.1|879332_879893_+	DUF1641 domain-containing protein	NA	NA	NA	NA	NA
AYK56550.1|880090_880735_+	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
AYK56551.1|880809_881436_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AYK56552.1|881466_881745_-	hypothetical protein	NA	NA	NA	NA	NA
AYK56553.1|882135_883326_+	cytochrome P450	NA	NA	NA	NA	NA
AYK56554.1|883348_884527_+	UDP-glucosyltransferase	NA	Q0IKX4	Leucania_separata_nucleopolyhedrovirus	28.3	5.6e-08
AYK56555.1|884567_884756_-	hypothetical protein	NA	A0A1P8CWV7	Bacillus_phage	77.6	3.4e-21
AYK56556.1|884929_885742_+	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
AYK56557.1|885787_886540_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
AYK56558.1|886539_887292_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.4	6.4e-18
AYK56559.1|887411_888386_-	multidrug resistance efflux transporter family protein	NA	NA	NA	NA	NA
AYK56560.1|889402_889825_+	DUF1641 domain-containing protein	NA	NA	NA	NA	NA
AYK56561.1|889864_891043_+	NADH dehydrogenase	NA	NA	NA	NA	NA
AYK56562.1|891240_892662_+	glucuronate isomerase	NA	NA	NA	NA	NA
AYK56563.1|894212_895226_+	ureidoglycolate dehydrogenase	NA	NA	NA	NA	NA
AYK56564.1|895231_896251_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
AYK56565.1|896275_897355_+	mannonate dehydratase	NA	NA	NA	NA	NA
AYK56566.1|897351_898188_+	SDR family NAD(P)-dependent oxidoreductase	NA	M1NMS3	Moumouvirus	30.4	2.7e-09
AYK56567.1|898235_899504_+	MFS transporter	NA	NA	NA	NA	NA
AYK56568.1|899591_900593_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AYK56569.1|900667_902110_+	tagaturonate reductase	NA	NA	NA	NA	NA
AYK56570.1|903637_904402_-	anion permease	NA	NA	NA	NA	NA
AYK56571.1|904620_905085_-	hypothetical protein	NA	NA	NA	NA	NA
AYK56572.1|906370_907521_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
AYK56573.1|907933_909070_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	47.4	4.9e-94
AYK56574.1|909059_909194_+	phosphatase RapA inhibitor PhrA	NA	NA	NA	NA	NA
AYK56575.1|909591_910545_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	73.8	1.6e-66
AYK56576.1|910584_910962_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	42.3	7.9e-17
AYK56577.1|911066_911669_+	hypothetical protein	NA	F8WQ53	Bacillus_phage	48.7	1.4e-44
AYK56578.1|911745_912582_+	manganese catalase family protein	NA	NA	NA	NA	NA
AYK56579.1|912625_913222_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	51.7	8.1e-40
AYK56580.1|913384_913726_-	transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	45.8	1.3e-18
AYK56581.1|913904_914084_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56582.1|914070_914907_+|portal	phage portal protein	portal	S6BFM4	Thermus_phage	27.8	6.7e-24
AYK56583.1|914806_915607_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	51.7	5.0e-61
AYK56584.1|915606_915774_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56585.1|915858_916209_+|portal	phage portal protein	portal	NA	NA	NA	NA
AYK56586.1|916205_916412_+	phage-like element PBSX protein XtrA	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	50.0	2.1e-11
AYK56587.1|916527_917037_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1L2JY33	Aeribacillus_phage	39.2	6.5e-22
AYK56588.1|918945_920433_+	phage-like element PBSX protein XkdE	NA	A0A1B1P7C8	Bacillus_phage	55.7	1.7e-139
AYK56589.1|920452_921280_+|portal	phage portal protein	portal	A0A1B1P7E4	Bacillus_phage	59.2	1.6e-54
AYK56590.1|921305_922241_+	phage-like element PBSX protein XkdG	NA	A0A1B1P7E3	Bacillus_phage	63.8	1.1e-104
AYK56591.1|922262_922646_+	DUF3199 family protein	NA	A0A1B1P7D6	Bacillus_phage	40.5	1.4e-13
AYK56592.1|922642_922999_+	phage-like element PBSX protein XkdH	NA	NA	NA	NA	NA
AYK56593.1|922995_923481_+	phage-like element PBSX protein XkdI	NA	A0A249XXA4	Clostridium_phage	47.0	2.1e-38
AYK56594.1|923493_923934_+	phage-like element PBSX protein XkdJ	NA	NA	NA	NA	NA
AYK56595.1|923937_924156_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56596.1|924152_925553_+|tail	phage tail sheath protein	tail	A0A0A7S087	Clostridium_phage	39.3	3.0e-77
AYK56597.1|925554_925998_+	phage-like element PBSX protein XkdM	NA	A0A0K2CNG3	Brevibacillus_phage	44.5	1.9e-25
AYK56598.1|926089_926536_+|portal	phage portal protein	portal	A0A0A7RTY8	Clostridium_phage	36.8	1.0e-10
AYK56599.1|926577_926718_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56600.1|926718_931722_+|portal	phage portal protein	portal	A0A2H4JA91	uncultured_Caudovirales_phage	44.3	1.9e-36
AYK56601.1|931714_932374_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A8WJR4	Clostridium_phage	33.2	1.1e-24
AYK56602.1|932389_933367_+	phage-like element PBSX protein XkdQ	NA	H7BV96	unidentified_phage	32.6	1.0e-39
AYK56603.1|933366_933633_+	phage-like element PBSX protein XkdR	NA	S6C459	Thermus_phage	36.4	1.7e-05
AYK56604.1|933690_934116_+	DUF2634 domain-containing protein	NA	A0A2H4J6K5	uncultured_Caudovirales_phage	38.0	3.0e-12
AYK56605.1|934108_935155_+|plate	baseplate J/gp47 family protein	plate	S6AVU3	Thermus_phage	44.3	1.3e-72
AYK56606.1|935138_935717_+	phage-like element PBSX protein XkdU	NA	A0A2H4J717	uncultured_Caudovirales_phage	34.2	3.9e-15
AYK56607.1|935713_935986_+	hypothetical protein	NA	NA	NA	NA	NA
AYK56608.1|935988_938052_+|terminase	terminase	terminase	A0A2H4J4R1	uncultured_Caudovirales_phage	34.5	2.6e-29
AYK56609.1|938063_938393_+|portal	phage portal protein	portal	A0A2H4JCI0	uncultured_Caudovirales_phage	40.7	1.3e-15
AYK56610.1|938389_938554_+	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	67.9	1.9e-15
AYK56611.1|938600_939440_+|portal	phage portal protein	portal	NA	NA	NA	NA
AYK56612.1|939492_939762_+	protein xhlA	NA	A0A2H4JD40	uncultured_Caudovirales_phage	64.8	1.4e-23
AYK56613.1|939774_940038_+|holin	holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	64.4	6.1e-24
AYK56614.1|940050_940944_+	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXD7	Bacillus_phage	69.2	5.2e-83
AYK56615.1|940981_941119_-	hypothetical protein	NA	NA	NA	NA	NA
AYK56616.1|941204_941375_-	type II toxin-antitoxin system SpoIISB family antitoxin	NA	NA	NA	NA	NA
AYK56617.1|942230_943232_-	low-affinity inorganic phosphate transporter	NA	NA	NA	NA	NA
AYK56618.1|943244_943862_-	DUF47 domain-containing protein	NA	NA	NA	NA	NA
AYK56619.1|944137_945454_-	amino acid permease	NA	NA	NA	NA	NA
AYK56620.1|945842_946793_+	ring-cleaving dioxygenase	NA	NA	NA	NA	NA
AYK59689.1|947009_949160_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
AYK56621.1|949171_950143_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	41.3	2.5e-62
AYK56622.1|950642_951992_-|protease	serine protease HtrA	protease	A0A1B1IT49	uncultured_Mediterranean_phage	34.1	3.4e-25
AYK56623.1|952160_952979_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AYK56624.1|953108_953933_+	aminopeptidase	NA	NA	NA	NA	NA
AYK56625.1|953949_954876_+	ABC transporter permease	NA	NA	NA	NA	NA
AYK56626.1|954881_955844_+	ABC transporter permease	NA	NA	NA	NA	NA
AYK56627.1|955848_956856_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	6.2e-16
AYK59690.1|956858_958508_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK56628.1|958595_959555_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
AYK56629.1|959551_960631_+	dipeptide epimerase	NA	NA	NA	NA	NA
AYK56630.1|960647_961538_+	NlpC/P60 family protein	NA	A0A0A8WIF2	Clostridium_phage	45.8	5.3e-19
AYK56631.1|961550_962540_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	31.0	3.8e-18
AYK56632.1|962582_963632_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
AYK59691.1|964740_965259_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AYK56633.1|965496_966696_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
AYK56634.1|966772_966997_-	hypothetical protein	NA	NA	NA	NA	NA
AYK56635.1|967145_967877_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
AYK56636.1|967968_968496_+	DinB family protein	NA	NA	NA	NA	NA
AYK56637.1|968485_969004_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYK56638.1|969225_969564_+	multidrug efflux SMR transporter subunit YkkC	NA	NA	NA	NA	NA
AYK56639.1|969563_969881_+	multidrug efflux SMR transporter subunit YkkD	NA	NA	NA	NA	NA
AYK56640.1|969951_970854_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AYK56641.1|971204_972302_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.1	4.3e-71
AYK56642.1|972313_973561_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	50.4	3.3e-99
AYK56643.1|973686_974112_+	organic hydroperoxide resistance protein OhrA	NA	NA	NA	NA	NA
AYK56644.1|974142_974586_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYK56645.1|974727_975138_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
AYK56646.1|975385_975856_-|tRNA	tRNA-specific adenosine deaminase	tRNA	S4VYZ2	Pandoravirus	45.8	1.8e-26
>prophage 6
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	1398579	1407303	4184648	transposase	Bacillus_phage(50.0%)	11	NA	NA
AYK57051.1|1398579_1398831_+	hypothetical protein	NA	A0A1P8CWV6	Bacillus_phage	96.4	1.0e-36
AYK57052.1|1399067_1399199_+	hypothetical protein	NA	A0A1P8CWV9	Bacillus_phage	93.0	2.7e-17
AYK57053.1|1399215_1399527_+	hypothetical protein	NA	NA	NA	NA	NA
AYK57054.1|1399613_1399847_+	3-ketosteroid-delta-1-dehydrogenase	NA	NA	NA	NA	NA
AYK57055.1|1399883_1400342_+	DUF4365 domain-containing protein	NA	NA	NA	NA	NA
AYK57056.1|1400383_1400584_+	hypothetical protein	NA	NA	NA	NA	NA
AYK57057.1|1400670_1401918_+|transposase	IS256-like element ISBsu2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	22.6	2.6e-24
AYK57058.1|1402018_1402357_-	XRE family transcriptional regulator	NA	A0A0P0IZG9	Lactobacillus_phage	31.7	3.5e-08
AYK57059.1|1402527_1402767_+	NINE protein	NA	M4ZS56	Bacillus_phage	67.1	1.4e-19
AYK57060.1|1403394_1404036_+	1,4-beta-xylanase	NA	NA	NA	NA	NA
AYK57061.1|1404702_1407303_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	34.8	3.3e-45
>prophage 7
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	1573647	1580219	4184648		Bacillus_phage(50.0%)	6	NA	NA
AYK57213.1|1573647_1574616_-	stage V sporulation protein K	NA	G3MAX6	Bacillus_virus	40.5	5.2e-52
AYK57214.1|1575256_1576024_+	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	49.5	1.2e-51
AYK57215.1|1576087_1576708_-	hypothetical protein	NA	A0A127AYS1	Bacillus_phage	48.4	1.6e-46
AYK57216.1|1576757_1577747_-	ribonucleoside-diphosphate reductase subunit beta	NA	F8WQ21	Bacillus_phage	83.5	1.9e-155
AYK57217.1|1577764_1579867_-	ribonucleotide-diphosphate reductase subunit alpha	NA	U5PY35	Bacillus_phage	86.8	0.0e+00
AYK57218.1|1579826_1580219_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	G3MBF1	Bacillus_virus	58.3	2.5e-29
>prophage 8
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	1591906	1602649	4184648	transposase,holin	Bacillus_phage(77.78%)	11	NA	NA
AYK57235.1|1591906_1593154_+|transposase	IS256-like element ISBsu2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	22.6	2.6e-24
AYK57236.1|1595032_1595368_+	hypothetical protein	NA	A0A1P8CWM9	Bacillus_phage	100.0	4.2e-54
AYK57237.1|1595411_1595771_-	hypothetical protein	NA	A0A1P8CWJ9	Bacillus_phage	100.0	3.5e-62
AYK57238.1|1596030_1596114_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AYK57239.1|1596402_1596936_-	N-acetyltransferase	NA	O64026	Bacillus_phage	98.9	4.0e-99
AYK57240.1|1596971_1597550_-	SMI1/KNR4 family protein	NA	O64025	Bacillus_phage	93.2	1.4e-100
AYK57241.1|1597605_1598064_-	SMI1/KNR4 family protein	NA	A0A1P8CWJ1	Bacillus_phage	85.5	2.8e-72
AYK57242.1|1598156_1598615_-	antitoxin YobK	NA	NA	NA	NA	NA
AYK57243.1|1598624_1600427_-	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	87.0	1.3e-218
AYK59711.1|1600527_1601085_-	SMI1/KNR4 family protein	NA	O64022	Bacillus_phage	95.1	5.3e-102
AYK57244.1|1601212_1602649_+	flavin monoamine oxidase family protein	NA	A0A2K9L3H9	Tupanvirus	41.8	7.5e-07
>prophage 9
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	1821194	1827289	4184648		Staphylococcus_phage(66.67%)	8	NA	NA
AYK57482.1|1821194_1821788_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	35.4	2.6e-14
AYK59721.1|1821777_1822533_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	29.2	5.5e-09
AYK57483.1|1822812_1823337_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
AYK57484.1|1823350_1823725_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYK57485.1|1823837_1824302_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	60.0	5.5e-44
AYK57486.1|1824334_1825531_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	54.9	4.1e-115
AYK57487.1|1825545_1826193_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	45.9	8.5e-43
AYK57488.1|1826203_1827289_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	36.1	5.1e-56
>prophage 10
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	2187751	2242689	4184648	transposase,coat,protease,tRNA	uncultured_Mediterranean_phage(12.5%)	57	NA	NA
AYK57851.1|2187751_2188897_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.0	3.4e-87
AYK57852.1|2188923_2189952_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AYK57853.1|2189981_2190182_-	DUF2905 domain-containing protein	NA	NA	NA	NA	NA
AYK57854.1|2190174_2191179_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	30.8	6.2e-08
AYK57855.1|2191189_2191795_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AYK57856.1|2191933_2192446_-	protein BofC	NA	NA	NA	NA	NA
AYK57857.1|2192493_2193801_-	MFS transporter	NA	NA	NA	NA	NA
AYK57858.1|2193871_2194897_-	inositol 2-dehydrogenase	NA	NA	NA	NA	NA
AYK57859.1|2195712_2195904_-	hypothetical protein	NA	NA	NA	NA	NA
AYK57860.1|2195908_2197261_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK57861.1|2197400_2197523_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59743.1|2197766_2198054_+	hypothetical protein	NA	NA	NA	NA	NA
AYK57862.1|2198060_2198201_+	hypothetical protein	NA	NA	NA	NA	NA
AYK57863.1|2198364_2199819_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
AYK59744.1|2199859_2200582_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AYK57864.1|2200684_2201281_-	sporulation protein	NA	NA	NA	NA	NA
AYK57865.1|2201428_2202592_-|coat	spore coat assembly protein SafA	coat	NA	NA	NA	NA
AYK57866.1|2202708_2203815_-	quinolinate synthase NadA	NA	NA	NA	NA	NA
AYK57867.1|2203801_2204671_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA	NA
AYK57868.1|2204624_2206220_-	L-aspartate oxidase	NA	NA	NA	NA	NA
AYK57869.1|2206322_2207510_+	aminotransferase class V-fold PLP-dependent enzyme	NA	A0A141ZJV0	Faustovirus	27.4	3.0e-33
AYK57870.1|2207469_2208012_+	transcription repressor NadR	NA	NA	NA	NA	NA
AYK57871.1|2208060_2209250_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.6	1.6e-31
AYK57872.1|2209348_2210206_-	prephenate dehydratase	NA	NA	NA	NA	NA
AYK57873.1|2210222_2210666_-	ACT domain-containing protein	NA	NA	NA	NA	NA
AYK57874.1|2210726_2212013_-	GTPase ObgE	NA	NA	NA	NA	NA
AYK57875.1|2212046_2212625_-	sporulation initiation phosphotransferase B	NA	NA	NA	NA	NA
AYK57876.1|2212702_2212825_+	hypothetical protein	NA	NA	NA	NA	NA
AYK57877.1|2212945_2213230_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AYK57878.1|2213242_2213581_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
AYK57879.1|2213583_2213892_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AYK57880.1|2214038_2214905_-	stage IV sporulation protein FB	NA	NA	NA	NA	NA
AYK57881.1|2214897_2215692_-	stage IV sporulation protein FA	NA	NA	NA	NA	NA
AYK57882.1|2215841_2216648_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AYK57883.1|2216649_2217330_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AYK57884.1|2217382_2217901_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AYK57885.1|2217897_2218770_-	cell shape-determining protein MreC	NA	NA	NA	NA	NA
AYK57886.1|2218800_2219814_-	rod shape-determining protein	NA	NA	NA	NA	NA
AYK57887.1|2219905_2220601_-	JAB domain-containing protein	NA	NA	NA	NA	NA
AYK57888.1|2220637_2221207_-	septum formation protein Maf	NA	NA	NA	NA	NA
AYK57889.1|2221359_2222358_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AYK57890.1|2222491_2223238_-	prepilin peptidase	NA	NA	NA	NA	NA
AYK57891.1|2223377_2224670_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AYK57892.1|2224729_2227372_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.6	3.7e-161
AYK57893.1|2227819_2228011_+	hypothetical protein	NA	NA	NA	NA	NA
AYK57894.1|2228029_2229055_-|coat	spore coat protein YsxE	coat	NA	NA	NA	NA
AYK57895.1|2229087_2230809_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AYK57896.1|2230939_2232232_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AYK57897.1|2232261_2233236_-	porphobilinogen synthase	NA	NA	NA	NA	NA
AYK57898.1|2233232_2234021_-	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
AYK57899.1|2234010_2234955_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
AYK57900.1|2234987_2235818_-	protein HemX	NA	NA	NA	NA	NA
AYK57901.1|2235825_2237193_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AYK57902.1|2237422_2237920_+	hypothetical protein	NA	NA	NA	NA	NA
AYK57903.1|2237941_2238529_-	GTP-binding protein	NA	NA	NA	NA	NA
AYK57904.1|2238525_2240850_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	43.7	2.6e-182
AYK57905.1|2241030_2242689_-|protease	Lon protease 2	protease	A0A1V0SHJ7	Hokovirus	33.7	8.1e-05
>prophage 11
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	2681886	2780668	4184648	transposase,coat,capsid,portal,integrase,protease,head,tail,holin,terminase	Bacillus_phage(16.28%)	114	2724008:2724025	2761738:2761755
AYK58291.1|2681886_2682906_-|coat	spore coat protein YutH	coat	NA	NA	NA	NA
AYK58292.1|2683058_2683559_+	phosphatidylglycerophosphatase A	NA	G3MBC5	Bacillus_virus	56.0	1.2e-41
AYK58293.1|2683585_2684356_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
AYK58294.1|2684384_2684819_-	DUF86 domain-containing protein	NA	NA	NA	NA	NA
AYK58295.1|2684842_2685118_-	DUF1027 domain-containing protein	NA	NA	NA	NA	NA
AYK58296.1|2685231_2685864_+	hypothetical protein	NA	NA	NA	NA	NA
AYK58297.1|2685879_2686776_-	lipoyl synthase	NA	NA	NA	NA	NA
AYK58298.1|2687010_2687991_+	M23 family metallopeptidase	NA	A0A075BS18	Microcystis_phage	37.3	3.0e-07
AYK58299.1|2688018_2688786_-	sporulation protein YunB	NA	NA	NA	NA	NA
AYK58300.1|2688858_2689164_-	DUF1805 domain-containing protein	NA	NA	NA	NA	NA
AYK58301.1|2689228_2690617_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AYK58302.1|2690636_2691458_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AYK59764.1|2691475_2692324_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
AYK58303.1|2692361_2692709_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58304.1|2692805_2694146_-	allantoinase	NA	NA	NA	NA	NA
AYK58305.1|2694320_2695916_+	PucR family transcriptional regulator	NA	NA	NA	NA	NA
AYK59765.1|2696060_2697410_+	purine permease	NA	Q9KX94	Enterobacteria_phage	28.1	2.3e-26
AYK58306.1|2697415_2698708_+	purine permease	NA	Q9KX94	Enterobacteria_phage	30.0	1.0e-26
AYK58307.1|2698720_2700205_+	urate oxidase	NA	NA	NA	NA	NA
AYK58308.1|2700204_2700549_+	hydroxyisourate hydrolase	NA	NA	NA	NA	NA
AYK58309.1|2701046_2702171_+|transposase	IS4-like element IS4Bsu1 family transposase	transposase	NA	NA	NA	NA
AYK58310.1|2702384_2702516_+	YhzE/YjcZ family sporulation protein YuzJ	NA	NA	NA	NA	NA
AYK58311.1|2702721_2703243_-	xanthine dehydrogenase subunit E	NA	NA	NA	NA	NA
AYK58312.1|2703233_2705471_-	xanthine dehydrogenase subunit D	NA	NA	NA	NA	NA
AYK58313.1|2705471_2706305_-	xanthine dehydrogenase subunit C	NA	NA	NA	NA	NA
AYK58314.1|2706301_2706919_-	xanthine dehydrogenase accessory protein PucB	NA	NA	NA	NA	NA
AYK58315.1|2706915_2707908_-	XdhC family protein	NA	NA	NA	NA	NA
AYK58316.1|2708136_2709387_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
AYK58317.1|2709403_2710642_-	allantoate amidohydrolase	NA	NA	NA	NA	NA
AYK58318.1|2711087_2711954_+	ribonuclease	NA	NA	NA	NA	NA
AYK58319.1|2712132_2713236_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	29.7	5.0e-19
AYK58320.1|2713417_2714146_+	transcriptional regulator PhoB	NA	NA	NA	NA	NA
AYK58321.1|2714170_2715025_-	fructoselysine 6-kinase	NA	NA	NA	NA	NA
AYK58322.1|2715038_2715941_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AYK58323.1|2715944_2716823_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AYK58324.1|2716880_2718149_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK58325.1|2718229_2719216_-	SIS domain-containing protein	NA	A0A2L2DN46	Acanthamoeba_polyphaga_mimivirus	23.6	1.9e-09
AYK58326.1|2719430_2719805_-	nucleotide excision repair endonuclease	NA	NA	NA	NA	NA
AYK58327.1|2719907_2721026_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AYK58328.1|2721184_2721331_+	acid-soluble spore protein SspG	NA	NA	NA	NA	NA
AYK58329.1|2721330_2721606_+	hypothetical protein	NA	NA	NA	NA	NA
AYK58330.1|2721663_2722814_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
AYK58331.1|2722959_2723343_-	VOC family protein	NA	NA	NA	NA	NA
AYK58332.1|2723453_2723732_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
2724008:2724025	attL	ACCTTCCATTTCGAACTT	NA	NA	NA	NA
AYK58333.1|2724403_2724646_-	helix-turn-helix domain-containing protein	NA	A0A2H4JDR0	uncultured_Caudovirales_phage	60.8	4.2e-19
AYK58334.1|2725231_2725768_+	hypothetical protein	NA	NA	NA	NA	NA
AYK58335.1|2726072_2726807_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58336.1|2726878_2727379_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58337.1|2727583_2728519_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXD7	Bacillus_phage	61.6	1.2e-90
AYK59766.1|2728576_2728840_-|holin	phage holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	65.1	4.4e-22
AYK58338.1|2728854_2729070_-	hypothetical protein	NA	A0A290GDY2	Caldibacillus_phage	53.6	2.0e-12
AYK58339.1|2729104_2729350_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58340.1|2729356_2729692_-	DUF2977 domain-containing protein	NA	NA	NA	NA	NA
AYK58341.1|2729692_2730979_-	DUF2479 domain-containing protein	NA	A0A1J0MFQ3	Staphylococcus_phage	38.4	9.2e-81
AYK59767.1|2730995_2731754_-	SGNH/GDSL hydrolase family protein	NA	Q4ZE16	Staphylococcus_virus	45.6	9.3e-57
AYK58342.1|2732025_2733207_-	hydrolase	NA	G3MB53	Bacillus_virus	46.9	1.9e-93
AYK58343.1|2733199_2734354_-	hypothetical protein	NA	A0A2H4JB19	uncultured_Caudovirales_phage	25.2	3.9e-06
AYK58344.1|2734362_2735202_-|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	30.4	9.7e-31
AYK58345.1|2735198_2740961_-|tail	phage tail tape measure protein	tail	A0A0B5CTS6	Listeria_phage	32.6	3.2e-48
AYK58346.1|2741143_2741464_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58347.1|2741539_2742115_-|tail	phage tail protein	tail	A0A1I9KKC4	Lactobacillus_phage	36.4	4.6e-24
AYK58348.1|2742173_2742563_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58349.1|2742559_2742988_-	HK97 gp10 family phage protein	NA	A0A0M5M1E5	Enterococcus_phage	44.3	2.6e-08
AYK58350.1|2742984_2743314_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AYK58351.1|2743320_2743635_-	hypothetical protein	NA	H9A116	Staphylococcus_phage	41.7	9.6e-08
AYK58352.1|2743648_2744854_-|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	47.8	1.0e-97
AYK58353.1|2744850_2745573_-|protease	Clp protease ClpP	protease	A0A0C5AJ10	Paenibacillus_phage	65.3	5.5e-67
AYK58354.1|2745547_2746768_-|portal	phage portal protein	portal	A0A2I7SCY4	Paenibacillus_phage	37.2	7.2e-67
AYK58355.1|2746779_2748570_-|terminase	terminase large subunit	terminase	F8J1B1	Lactobacillus_phage	60.7	2.9e-210
AYK59768.1|2748559_2749045_-|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	39.4	4.1e-26
AYK58356.1|2749243_2749558_-	HNH endonuclease	NA	A0A0C5AEM7	Paenibacillus_phage	46.6	1.5e-16
AYK58357.1|2749589_2749790_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58358.1|2749926_2750478_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58359.1|2750902_2751313_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58360.1|2751309_2751867_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58361.1|2751867_2752119_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58362.1|2752628_2753081_-	ArpU family transcriptional regulator	NA	S6AVV9	Thermus_phage	53.2	1.8e-36
AYK58363.1|2753178_2753379_-	hypothetical protein	NA	A0A1L2JY31	Aeribacillus_phage	60.0	1.8e-07
AYK58364.1|2753375_2753588_-	hypothetical protein	NA	A0A0U4B0C8	Bacillus_phage	48.4	9.9e-09
AYK58365.1|2753577_2754906_-	replicative DNA helicase	NA	W8EEZ1	Geobacillus_phage	56.3	5.5e-137
AYK58366.1|2754906_2755263_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58367.1|2755255_2756029_-	Replication protein O	NA	A0A2P1JTY8	Anoxybacillus_phage	41.1	1.6e-43
AYK58368.1|2756577_2757426_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58369.1|2757438_2758092_-	DNA-binding protein	NA	A0A288WFT2	Bacillus_phage	39.1	6.4e-38
AYK58370.1|2758144_2758402_+	hypothetical protein	NA	NA	NA	NA	NA
AYK58371.1|2758558_2758873_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58372.1|2758902_2759172_-	group-specific protein	NA	A0A0S2SXU9	Bacillus_phage	51.7	7.1e-20
AYK58373.1|2759184_2759430_-	XRE family transcriptional regulator	NA	A0A0S2SXX9	Bacillus_phage	77.2	6.9e-30
AYK58374.1|2759607_2759979_+	XRE family transcriptional regulator	NA	A0A0S2SXM8	Bacillus_phage	72.7	1.6e-22
AYK58375.1|2759986_2760454_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I7SC21	Paenibacillus_phage	60.1	1.1e-44
AYK58376.1|2760504_2761662_+|integrase	site-specific integrase	integrase	S5MBZ0	Brevibacillus_phage	66.8	2.4e-149
AYK58377.1|2761725_2763123_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
2761738:2761755	attR	ACCTTCCATTTCGAACTT	NA	NA	NA	NA
AYK58378.1|2763143_2763587_-	iron-sulfur cluster assembly scaffold protein NifU	NA	A0A2P1CJL8	Mycobacterium_phage	38.7	1.9e-14
AYK58379.1|2763576_2764797_-	cysteine desulfurase SufS	NA	Q2XUY6	environmental_halophage	47.8	3.4e-117
AYK58380.1|2764796_2766110_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
AYK58381.1|2766127_2766913_-	Fe-S cluster assembly ATPase SufC	NA	W8CYL7	Bacillus_phage	23.6	6.5e-05
AYK58382.1|2766946_2767144_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58383.1|2767106_2767244_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58384.1|2767437_2767815_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AYK58385.1|2768100_2768925_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK58386.1|2768938_2769607_-	methionine import system permease MetP	NA	NA	NA	NA	NA
AYK58387.1|2769599_2770625_-	methionine import ATP-binding protein MetN	NA	G3M9Y6	Bacillus_virus	36.5	1.4e-31
AYK58388.1|2770951_2771296_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58389.1|2771402_2771723_-	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AYK58390.1|2771724_2772165_-	toprim domain-containing protein	NA	NA	NA	NA	NA
AYK58391.1|2772164_2772401_-	DUF2553 family protein	NA	NA	NA	NA	NA
AYK58392.1|2772456_2772840_-	glycine cleavage system protein H	NA	NA	NA	NA	NA
AYK58393.1|2772906_2773263_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	54.6	1.8e-23
AYK58394.1|2773373_2775158_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYK58395.1|2775175_2776351_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AYK58396.1|2778904_2779051_+	YuzL family protein	NA	NA	NA	NA	NA
AYK58397.1|2779075_2779984_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	42.2	3.9e-62
AYK58398.1|2780077_2780323_+	hypothetical protein	NA	NA	NA	NA	NA
AYK58399.1|2780335_2780668_+|coat	spore coat protein	coat	NA	NA	NA	NA
>prophage 12
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	2862720	2925979	4184648	transposase,capsid,portal,integrase,protease,head,tail,holin,terminase	Bacillus_phage(62.22%)	72	2875348:2875370	2915447:2915469
AYK58474.1|2862720_2864073_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK58475.1|2864201_2866613_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	37.8	1.3e-120
AYK58476.1|2866696_2866906_-	copper resistance protein CopZ	NA	NA	NA	NA	NA
AYK58477.1|2866981_2867287_-	transcriptional regulator	NA	NA	NA	NA	NA
AYK58478.1|2867414_2868491_+	oxidoreductase	NA	NA	NA	NA	NA
AYK58479.1|2869300_2871187_-	FUSC family protein	NA	NA	NA	NA	NA
AYK58480.1|2871352_2871754_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58481.1|2871750_2872110_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AYK58482.1|2872106_2872679_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYK58483.1|2872789_2873584_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYK58484.1|2873853_2875206_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK58485.1|2875210_2875423_+	hypothetical protein	NA	NA	NA	NA	NA
2875348:2875370	attL	TATGTATGGAGACGGTGGGAGTC	NA	NA	NA	NA
AYK59773.1|2875677_2875866_+	hypothetical protein	NA	A0A2H4J4T3	uncultured_Caudovirales_phage	53.3	1.4e-11
AYK58486.1|2876031_2877744_+	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	58.9	1.3e-74
AYK58487.1|2877749_2878034_+	hypothetical protein	NA	NA	NA	NA	NA
AYK58488.1|2878209_2878965_+	hypothetical protein	NA	NA	NA	NA	NA
AYK58489.1|2879005_2879977_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	69.2	1.5e-64
AYK58490.1|2880021_2880444_-|holin	holin family protein	holin	D6R405	Bacillus_phage	83.5	4.8e-55
AYK58491.1|2880484_2880667_-	XkdX family protein	NA	A0EWM9	Staphylococcus_virus	47.9	1.0e-06
AYK58492.1|2881004_2882234_-	DUF2479 domain-containing protein	NA	M4ZRP1	Bacillus_phage	69.5	5.6e-152
AYK59774.1|2882246_2882801_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58493.1|2884328_2886026_-	alkaline phosphatase	NA	D6R400	Bacillus_phage	79.5	3.2e-267
AYK58494.1|2886037_2886877_-|tail	phage tail family protein	tail	D6R3Z9	Bacillus_phage	83.2	2.2e-136
AYK58495.1|2886876_2890755_-|tail	phage tail tape measure protein	tail	D6R3Z8	Bacillus_phage	81.6	0.0e+00
AYK58496.1|2890767_2890947_-	hypothetical protein	NA	D6R3Z7	Bacillus_phage	68.5	1.6e-12
AYK58497.1|2890949_2891288_-	hypothetical protein	NA	Q9ZXE8	Bacillus_phage	70.5	3.0e-39
AYK58498.1|2891342_2891954_-|tail	phage tail protein	tail	Q9ZXE9	Bacillus_phage	89.7	7.9e-99
AYK58499.1|2891954_2892335_-	DUF3168 domain-containing protein	NA	Q9ZXF0	Bacillus_phage	66.1	2.6e-39
AYK58500.1|2892331_2892715_-	HK97 gp10 family phage protein	NA	Q9ZXF1	Bacillus_phage	89.0	5.3e-61
AYK58501.1|2892707_2893079_-|head,tail	head-tail adaptor protein	head,tail	Q9ZXF2	Bacillus_phage	67.5	7.8e-41
AYK58502.1|2893011_2893359_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q9ZXF3	Bacillus_phage	89.6	2.8e-53
AYK58503.1|2893374_2893830_-	collagen-like protein	NA	D6R3Z0	Bacillus_phage	60.2	9.6e-25
AYK58504.1|2893858_2894173_-	hypothetical protein	NA	Q9ZXF5	Bacillus_phage	67.7	7.5e-29
AYK58505.1|2894189_2895392_-|capsid	phage major capsid protein	capsid	Q9ZXF6	Bacillus_phage	72.3	3.5e-159
AYK58506.1|2895428_2896055_-|head,protease	HK97 family phage prohead protease	head,protease	Q9ZXF7	Bacillus_phage	92.8	1.8e-106
AYK58507.1|2896044_2897292_-|portal	phage portal protein	portal	D6R3Y6	Bacillus_phage	86.3	2.5e-216
AYK58508.1|2897297_2897516_-	hypothetical protein	NA	Q9ZXF9	Bacillus_phage	80.6	5.4e-26
AYK58509.1|2897528_2899238_-|terminase	terminase large subunit	terminase	D6R3Y4	Bacillus_phage	92.4	0.0e+00
AYK58510.1|2899237_2899771_-|terminase	phage terminase small subunit P27 family	terminase	Q9ZXG2	Bacillus_phage	81.9	2.3e-70
AYK59775.1|2900150_2900525_-	HNH endonuclease	NA	Q38456	Bacillus_phage	82.3	7.5e-60
AYK58511.1|2900574_2901321_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58512.1|2901711_2902485_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58513.1|2902635_2903019_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58514.1|2903672_2904215_-|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	63.9	5.8e-61
AYK59776.1|2904211_2904664_-	ArpU family transcriptional regulator	NA	S6AVV9	Thermus_phage	55.9	1.7e-37
AYK58515.1|2905273_2905660_-	hypothetical protein	NA	A0A1P8CWX0	Bacillus_phage	36.2	3.8e-14
AYK58516.1|2905656_2906136_-	hypothetical protein	NA	F8WQ59	Bacillus_phage	53.8	1.0e-21
AYK58517.1|2906135_2906828_-	dUTPase	NA	R9TQ23	Paenibacillus_phage	43.7	6.7e-38
AYK58518.1|2906990_2907239_-	hypothetical protein	NA	A0A2H4JA61	uncultured_Caudovirales_phage	44.9	6.0e-05
AYK58519.1|2907235_2907643_-	hypothetical protein	NA	W8CYU3	Bacillus_phage	45.0	2.9e-25
AYK58520.1|2907639_2907924_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58521.1|2907967_2908165_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58522.1|2908412_2908553_-	BH0509 family protein	NA	NA	NA	NA	NA
AYK58523.1|2908660_2909209_-	hypothetical protein	NA	A0A0K2CYJ0	Paenibacillus_phage	39.3	4.6e-05
AYK58524.1|2909523_2910351_-	ATP-binding protein	NA	A0A0U3U1U1	Bacillus_phage	35.9	3.7e-35
AYK58525.1|2910334_2911216_-	replication protein	NA	V9QKF6	Oenococcus_phage	33.1	6.8e-27
AYK58526.1|2911208_2911427_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58527.1|2911451_2911643_-	helix-turn-helix domain-containing protein	NA	A0A1B2APY7	Phage_Wrath	59.0	1.0e-12
AYK58528.1|2911694_2911898_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYK58529.1|2912132_2912531_+	XRE family transcriptional regulator	NA	S5M5X8	Brevibacillus_phage	33.7	4.3e-05
AYK58530.1|2912963_2914064_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYK58531.1|2915988_2916459_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	63.4	3.2e-47
2915447:2915469	attR	TATGTATGGAGACGGTGGGAGTC	NA	NA	NA	NA
AYK58532.1|2916603_2918943_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	43.4	1.3e-88
AYK58533.1|2918961_2919702_-	carboxylesterase	NA	NA	NA	NA	NA
AYK58534.1|2919833_2920064_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AYK58535.1|2920212_2920986_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYK58536.1|2921019_2921253_-	transcriptional regulator	NA	NA	NA	NA	NA
AYK58537.1|2921404_2921812_+	transcriptional regulator	NA	S6C481	Thermus_phage	64.8	1.9e-16
AYK58538.1|2921841_2922252_+	XRE family transcriptional regulator	NA	S6C481	Thermus_phage	59.7	5.4e-11
AYK58539.1|2922343_2922670_+	HxlR family transcriptional regulator	NA	NA	NA	NA	NA
AYK58540.1|2924382_2924622_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58541.1|2924626_2925979_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
>prophage 13
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	3055111	3096442	4184648	transposase,holin,protease	Streptococcus_phage(16.67%)	35	NA	NA
AYK58652.1|3055111_3056464_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK58653.1|3056580_3057099_-	acetyltransferase	NA	NA	NA	NA	NA
AYK58654.1|3057102_3057753_-	pyrophosphatase PpaX	NA	NA	NA	NA	NA
AYK58655.1|3057749_3058688_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58656.1|3058711_3059521_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AYK58657.1|3059535_3060468_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AYK58658.1|3060649_3061840_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
AYK58659.1|3061836_3062565_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
AYK58660.1|3062582_3063314_+	transcriptional regulator	NA	NA	NA	NA	NA
AYK58661.1|3063334_3067204_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58662.1|3067394_3067904_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYK58663.1|3067924_3069136_+	MFS transporter	NA	NA	NA	NA	NA
AYK58664.1|3069234_3070423_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.6	1.6e-31
AYK58665.1|3070476_3070836_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AYK58666.1|3070829_3071036_-	PspC domain-containing protein	NA	NA	NA	NA	NA
AYK58667.1|3071041_3072139_-	DUF4097 domain-containing protein	NA	NA	NA	NA	NA
AYK58668.1|3072163_3072490_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58669.1|3072707_3072956_+	hypothetical protein	NA	NA	NA	NA	NA
AYK58670.1|3073123_3073945_-	flagellin	NA	NA	NA	NA	NA
AYK58671.1|3074282_3077156_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.3	0.0e+00
AYK58672.1|3077163_3079149_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AYK58673.1|3079334_3079565_-	protein CsbA	NA	NA	NA	NA	NA
AYK58674.1|3080012_3082505_+	phosphotransferase	NA	NA	NA	NA	NA
AYK58675.1|3082580_3083150_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYK58676.1|3083180_3084515_+	MFS transporter	NA	NA	NA	NA	NA
AYK58677.1|3084562_3085756_-|protease	serine protease	protease	NA	NA	NA	NA
AYK58678.1|3085834_3086188_-	swarming motility protein SwrAA	NA	NA	NA	NA	NA
AYK58679.1|3086571_3088014_-|protease	carboxy-terminal processing protease CtpB	protease	A0A0R6PIZ1	Moraxella_phage	27.8	6.3e-22
AYK59782.1|3088153_3089044_-	ABC transporter permease	NA	NA	NA	NA	NA
AYK58680.1|3089036_3089723_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.0	2.9e-25
AYK58681.1|3089956_3090295_-	cytochrome c551	NA	NA	NA	NA	NA
AYK58682.1|3090343_3091228_-	YitT family protein	NA	NA	NA	NA	NA
AYK58683.1|3091353_3092455_-	peptide chain release factor 2	NA	NA	NA	NA	NA
AYK58684.1|3092524_3095050_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
AYK58685.1|3095292_3096442_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
>prophage 14
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	3284798	3352730	4184648	transposase,coat,tRNA,bacteriocin,protease	Bacillus_phage(20.0%)	66	NA	NA
AYK58875.1|3284798_3285987_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.6	1.6e-31
AYK58876.1|3286054_3287662_-	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.1	1.0e-153
AYK58877.1|3287903_3288410_-	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
AYK58878.1|3288592_3289732_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYK58879.1|3289728_3291846_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AYK58880.1|3292000_3293197_+	cardiolipin synthase	NA	NA	NA	NA	NA
AYK58881.1|3293209_3294172_+	UV damage endonuclease UvsE	NA	A0A127AW32	Bacillus_phage	34.6	7.7e-40
AYK58882.1|3294252_3294525_+	hypothetical protein	NA	NA	NA	NA	NA
AYK58883.1|3294661_3296014_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK58884.1|3296018_3296201_+	hypothetical protein	NA	NA	NA	NA	NA
AYK58885.1|3297732_3299403_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AYK58886.1|3299399_3299828_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
AYK58887.1|3300140_3300272_+|bacteriocin	subtilosin A family bacteriocin	bacteriocin	NA	NA	NA	NA
AYK58888.1|3300228_3300381_+|bacteriocin	bacteriocin-like protein SboX	bacteriocin	NA	NA	NA	NA
AYK58889.1|3300405_3301752_+	subtilosin maturase AlbA	NA	NA	NA	NA	NA
AYK58890.1|3301764_3301926_+|bacteriocin	antilisterial bacteriocin subtilosin biosynthesis protein AlbB	bacteriocin	NA	NA	NA	NA
AYK58891.1|3301922_3302642_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.2	1.6e-18
AYK58892.1|3302634_3303945_+|bacteriocin	antilisterial bacteriocin subtilosin biosynthesis protein AlbD	bacteriocin	NA	NA	NA	NA
AYK59790.1|3303934_3305095_+	insulinase family protein	NA	NA	NA	NA	NA
AYK58893.1|3305099_3306380_+	insulinase family protein	NA	NA	NA	NA	NA
AYK58894.1|3306376_3307078_+|bacteriocin	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	bacteriocin	NA	NA	NA	NA
AYK58895.1|3307083_3308460_-	YncE family protein	NA	NA	NA	NA	NA
AYK58896.1|3310079_3311225_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	42.7	3.2e-77
AYK58897.1|3311208_3311328_+	phosphatase RapF inhibitor	NA	NA	NA	NA	NA
AYK58898.1|3311917_3312790_-	agmatinase	NA	NA	NA	NA	NA
AYK58899.1|3312850_3313681_-	spermidine synthase	NA	NA	NA	NA	NA
AYK58900.1|3313883_3315959_+	penicillin-binding protein	NA	NA	NA	NA	NA
AYK58901.1|3315986_3316421_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58902.1|3316559_3317078_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58903.1|3317091_3317751_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
AYK58904.1|3317859_3318048_+	2-hydroxymuconate tautomerase	NA	NA	NA	NA	NA
AYK58905.1|3318090_3318510_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYK58906.1|3318629_3320546_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	43.4	1.9e-143
AYK58907.1|3321155_3321311_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58908.1|3321438_3322791_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
AYK58909.1|3322790_3323261_-	transcriptional regulator	NA	NA	NA	NA	NA
AYK58910.1|3323372_3323873_-	YwgA family protein	NA	NA	NA	NA	NA
AYK58911.1|3323908_3325210_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	28.9	4.2e-25
AYK58912.1|3325371_3325596_-	DUF1450 domain-containing protein	NA	NA	NA	NA	NA
AYK58913.1|3325810_3326587_+	RsfA family transcriptional regulator	NA	A0A1D6X8E5	Bacillus_phage	50.0	7.6e-06
AYK58914.1|3326730_3327621_-	DMT family transporter	NA	NA	NA	NA	NA
AYK58915.1|3327789_3328635_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AYK58916.1|3328683_3329583_-	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	42.5	3.6e-07
AYK58917.1|3329728_3330700_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AYK58918.1|3330974_3331739_+	heme-dependent peroxidase	NA	NA	NA	NA	NA
AYK58919.1|3331871_3332651_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYK58920.1|3332543_3332825_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58921.1|3333091_3334330_-	MFS transporter	NA	NA	NA	NA	NA
AYK58922.1|3334539_3335952_-	amino acid permease	NA	NA	NA	NA	NA
AYK58923.1|3335951_3337652_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
AYK58924.1|3337725_3339273_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AYK58925.1|3339499_3340774_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AYK58926.1|3340951_3341416_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58927.1|3341740_3342196_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK58928.1|3342188_3343040_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.3	1.7e-38
AYK58929.1|3343053_3344001_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	43.8	4.4e-72
AYK58930.1|3344000_3344741_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	42.0	7.7e-48
AYK58931.1|3344765_3345785_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK58932.1|3345787_3346510_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK58933.1|3346502_3347624_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK58934.1|3347623_3348493_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYK58935.1|3348493_3349663_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A1D8KU11	Synechococcus_phage	27.2	6.5e-17
AYK58936.1|3349683_3351105_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
AYK58937.1|3351109_3351880_-	glycosyltransferase family 2 protein	NA	A0A0F7L2F7	uncultured_marine_virus	28.6	3.4e-06
AYK58938.1|3351845_3352052_-	hypothetical protein	NA	NA	NA	NA	NA
AYK58939.1|3352199_3352730_+|coat	spore coat protein GerQ	coat	NA	NA	NA	NA
>prophage 15
CP032853	Bacillus subtilis subsp. subtilis strain MH-1 chromosome, complete genome	4184648	3545683	3655652	4184648	transposase,coat,bacteriocin,protease,holin	Bacillus_phage(23.08%)	105	NA	NA
AYK59111.1|3545683_3546808_-|transposase	IS4-like element IS4Bsu1 family transposase	transposase	NA	NA	NA	NA
AYK59112.1|3547101_3547857_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
AYK59113.1|3547910_3548843_+	aldo/keto reductase	NA	NA	NA	NA	NA
AYK59114.1|3549072_3549387_+	DUF2628 domain-containing protein	NA	L7TIP7	Escherichia_phage	47.0	1.6e-10
AYK59115.1|3549490_3549961_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59116.1|3550717_3551230_+	HPP family protein	NA	NA	NA	NA	NA
AYK59117.1|3552775_3554656_-	molecular chaperone HtpG	NA	A0A1V0SAD6	Catovirus	33.4	8.1e-94
AYK59118.1|3554823_3555075_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59119.1|3556264_3556465_+	transcriptional regulator	NA	NA	NA	NA	NA
AYK59120.1|3556482_3556884_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59121.1|3557087_3557306_-|bacteriocin	bacteriocin leader domain-containing protein	bacteriocin	NA	NA	NA	NA
AYK59122.1|3557350_3557572_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59123.1|3557893_3559018_+|transposase	IS4-like element IS4Bsu1 family transposase	transposase	NA	NA	NA	NA
AYK59124.1|3559295_3559550_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59125.1|3559713_3561897_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	30.8	1.7e-50
AYK59126.1|3561897_3563367_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AYK59127.1|3563468_3563657_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59128.1|3563775_3564810_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AYK59129.1|3564903_3565479_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYK59130.1|3566737_3567169_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYK59131.1|3567395_3567800_+|holin	CidA/LrgA family holin-like protein	holin	NA	NA	NA	NA
AYK59132.1|3567769_3568462_+	LrgB family protein	NA	NA	NA	NA	NA
AYK59133.1|3568501_3569518_-	general stress protein	NA	NA	NA	NA	NA
AYK59134.1|3569610_3570759_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.6	9.8e-50
AYK59135.1|3570954_3571686_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYK59136.1|3571678_3573220_+	gluconokinase	NA	NA	NA	NA	NA
AYK59137.1|3573248_3574595_+	gluconate permease	NA	NA	NA	NA	NA
AYK59138.1|3574617_3576024_+	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	NA	E3SJC4	Synechococcus_phage	30.3	2.5e-31
AYK59139.1|3576514_3577078_+	peroxiredoxin	NA	NA	NA	NA	NA
AYK59140.1|3577091_3578621_+	alkyl hydroperoxide reductase subunit F	NA	A0A1V0SIN1	Klosneuvirus	29.3	1.0e-33
AYK59141.1|3578716_3580153_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
AYK59142.1|3580166_3580385_-	biotin/lipoyl-binding protein	NA	NA	NA	NA	NA
AYK59143.1|3580728_3581439_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYK59144.1|3581529_3582252_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AYK59145.1|3582272_3582902_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
AYK59146.1|3583382_3585308_+	fructose-bisphosphatase class III	NA	NA	NA	NA	NA
AYK59147.1|3585758_3586109_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59148.1|3586589_3587030_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	34.4	3.4e-11
AYK59149.1|3587030_3587210_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59150.1|3587449_3588208_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	38.6	5.8e-43
AYK59798.1|3588204_3589752_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
AYK59151.1|3589881_3590268_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59152.1|3590679_3592143_+	hypothetical protein	NA	A0A0S2MYH0	Enterococcus_phage	36.0	1.0e-11
AYK59153.1|3592377_3594261_-	ATP-dependent helicase	NA	S5MMD7	Bacillus_phage	21.8	6.6e-19
AYK59154.1|3594241_3596275_-	DUF2813 domain-containing protein	NA	NA	NA	NA	NA
AYK59155.1|3596791_3597942_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	98.9	9.8e-151
AYK59799.1|3598640_3598904_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59156.1|3599287_3600202_-|transposase	IS3 family transposase	transposase	A0A1B3AZE5	Gordonia_phage	22.9	4.0e-06
AYK59157.1|3600198_3600516_-|transposase	transposase	transposase	NA	NA	NA	NA
AYK59158.1|3600780_3601095_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59159.1|3601067_3603902_-	DEAD/DEAH box helicase	NA	A7WKM3	Acidianus_filamentous_virus	26.4	6.0e-08
AYK59160.1|3603858_3604767_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59161.1|3605054_3605534_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AYK59162.1|3605614_3605785_-	CxxH/CxxC protein	NA	NA	NA	NA	NA
AYK59163.1|3605969_3606383_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59164.1|3606416_3607643_-	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	29.3	1.1e-11
AYK59165.1|3607705_3607876_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59166.1|3607980_3608229_-	DUF2651 domain-containing protein	NA	NA	NA	NA	NA
AYK59167.1|3608244_3609402_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59168.1|3609412_3610150_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59169.1|3610844_3611942_+	transcriptional regulator	NA	D6R410	Bacillus_phage	39.3	6.0e-73
AYK59170.1|3611942_3612059_+	phosphatase RapG inhibitor	NA	NA	NA	NA	NA
AYK59171.1|3612295_3613186_-	arginase	NA	A0A1V0SJM8	Klosneuvirus	29.1	2.0e-26
AYK59172.1|3613258_3614662_-	amino-acid permease RocE	NA	NA	NA	NA	NA
AYK59173.1|3614884_3616090_-	ornithine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	28.5	2.0e-29
AYK59174.1|3616422_3617025_-	sporulation delaying protein family toxin	NA	NA	NA	NA	NA
AYK59175.1|3617086_3618040_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59176.1|3618024_3618579_-	SdpA family antimicrobial peptide system protein	NA	NA	NA	NA	NA
AYK59177.1|3618762_3619398_-	SdpI family protein	NA	NA	NA	NA	NA
AYK59800.1|3619397_3619682_-	ArsR family transcriptional regulator	NA	A0A218MNF3	uncultured_virus	41.3	2.8e-06
AYK59178.1|3619908_3621294_+	arginine utilization regulatory protein RocR	NA	NA	NA	NA	NA
AYK59179.1|3621608_3622811_-|protease	serine protease	protease	W5SAB9	Pithovirus	40.4	5.9e-13
AYK59180.1|3622892_3623687_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.6	9.8e-41
AYK59181.1|3623708_3624551_-	two-component system YycFG regulatory protein	NA	NA	NA	NA	NA
AYK59801.1|3624537_3625905_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59182.1|3625894_3627730_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	33.5	4.4e-36
AYK59802.1|3627737_3628445_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	41.2	3.4e-45
AYK59183.1|3629475_3630768_-	adenylosuccinate synthase	NA	G5CQQ4	Megavirus	35.9	3.1e-68
AYK59184.1|3630973_3631393_-	VOC family protein	NA	NA	NA	NA	NA
AYK59185.1|3631512_3632877_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	54.8	3.6e-128
AYK59186.1|3633046_3633247_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
AYK59187.1|3633294_3633498_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59188.1|3633618_3633759_+	YycC family protein	NA	NA	NA	NA	NA
AYK59189.1|3633831_3635040_+	MFS transporter	NA	NA	NA	NA	NA
AYK59190.1|3635145_3637203_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
AYK59191.1|3637240_3637690_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
AYK59192.1|3637686_3639666_-	DHH family phosphoesterase	NA	NA	NA	NA	NA
AYK59193.1|3640846_3640996_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59194.1|3641141_3641624_+|coat	spore coat protein	coat	NA	NA	NA	NA
AYK59195.1|3641655_3642033_-	HxlR family transcriptional regulator	NA	NA	NA	NA	NA
AYK59196.1|3642238_3643168_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AYK59197.1|3643200_3643647_-	ANTAR domain-containing protein	NA	NA	NA	NA	NA
AYK59198.1|3643658_3643979_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59199.1|3644079_3645390_+	MFS transporter	NA	NA	NA	NA	NA
AYK59200.1|3645550_3646231_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AYK59201.1|3646324_3647113_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59202.1|3647180_3647570_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AYK59203.1|3647715_3648555_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
AYK59204.1|3648653_3649842_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.6	1.6e-31
AYK59205.1|3651099_3651552_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYK59206.1|3651671_3652118_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYK59207.1|3652114_3652717_+	YitT family protein	NA	NA	NA	NA	NA
AYK59208.1|3652784_3653306_-	GNAT family N-acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	46.7	2.3e-43
AYK59209.1|3653569_3653926_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
AYK59210.1|3654527_3655652_-|transposase	IS4-like element IS4Bsu1 family transposase	transposase	NA	NA	NA	NA
>prophage 1
CP032854	Bacillus subtilis subsp. subtilis strain MH-1 plasmid unnamed1, complete sequence	24698	0	7640	24698		Streptococcus_phage(100.0%)	6	NA	NA
AYK59824.1|1024_1660_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59825.1|1671_4026_-	conjugal transfer protein	NA	A0A1S5SF30	Streptococcus_phage	30.3	1.4e-58
AYK59826.1|4025_4460_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59827.1|4456_7003_-	hypothetical protein	NA	A0A1S5SF64	Streptococcus_phage	42.4	1.8e-181
AYK59828.1|6980_7409_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	35.5	3.8e-15
AYK59829.1|7421_7640_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	35.7	1.4e-05
>prophage 2
CP032854	Bacillus subtilis subsp. subtilis strain MH-1 plasmid unnamed1, complete sequence	24698	14559	15693	24698		Bacillus_phage(100.0%)	1	NA	NA
AYK59836.1|14559_15693_+	ParM/StbA family protein	NA	A0A1B1P792	Bacillus_phage	39.9	1.6e-68
>prophage 3
CP032854	Bacillus subtilis subsp. subtilis strain MH-1 plasmid unnamed1, complete sequence	24698	18907	23976	24698		Bacillus_phage(66.67%)	9	NA	NA
AYK59841.1|18907_19432_-	hypothetical protein	NA	A0A1P8CWK6	Bacillus_phage	46.8	1.8e-22
AYK59842.1|19677_20004_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59843.1|20055_20325_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59844.1|20317_20590_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59845.1|20641_21331_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59846.1|21444_21729_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59851.1|21922_23026_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	29.3	3.8e-43
AYK59847.1|23469_23670_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59848.1|23691_23976_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	A0A2I7SC16	Paenibacillus_phage	54.5	4.4e-12
