The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	116922	170393	4199434	coat,protease,tRNA	uncultured_Mediterranean_phage(12.5%)	56	NA	NA
AYK59965.1|116922_118068_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.0	3.4e-87
AYK59966.1|118094_119123_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AYK59967.1|119152_119353_-	DUF2905 domain-containing protein	NA	NA	NA	NA	NA
AYK59968.1|119345_120350_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	30.8	1.1e-07
AYK59969.1|120360_120966_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AYK59970.1|121104_121617_-	protein BofC	NA	NA	NA	NA	NA
AYK59971.1|121664_122972_-	MFS transporter	NA	NA	NA	NA	NA
AYK59972.1|123042_124068_-	inositol 2-dehydrogenase	NA	NA	NA	NA	NA
AYK59973.1|124305_124953_+	serine/threonine protein kinase	NA	A0A2R3ZQF2	Marseillevirus	26.3	5.4e-05
AYK59974.1|124998_125121_-	hypothetical protein	NA	NA	NA	NA	NA
AYK59975.1|125205_125652_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59976.1|125658_125799_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59977.1|125962_127417_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
AYK63884.1|127457_128180_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AYK59978.1|128282_128879_-	sporulation protein	NA	NA	NA	NA	NA
AYK59979.1|129026_130190_-|coat	spore coat assembly protein SafA	coat	NA	NA	NA	NA
AYK59980.1|130306_131413_-	quinolinate synthase NadA	NA	NA	NA	NA	NA
AYK59981.1|131399_132269_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA	NA
AYK59982.1|132222_133818_-	L-aspartate oxidase	NA	NA	NA	NA	NA
AYK59983.1|133920_135108_+	aminotransferase class V-fold PLP-dependent enzyme	NA	A0A141ZJV0	Faustovirus	27.4	1.7e-33
AYK59984.1|135067_135610_+	transcription repressor NadR	NA	NA	NA	NA	NA
AYK59985.1|135633_136491_-	prephenate dehydratase	NA	NA	NA	NA	NA
AYK59986.1|136507_136951_-	ACT domain-containing protein	NA	NA	NA	NA	NA
AYK59987.1|137011_138298_-	GTPase ObgE	NA	NA	NA	NA	NA
AYK59988.1|138331_138910_-	sporulation initiation phosphotransferase B	NA	NA	NA	NA	NA
AYK59989.1|138987_139110_+	hypothetical protein	NA	NA	NA	NA	NA
AYK59990.1|139230_139515_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AYK59991.1|139527_139866_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
AYK59992.1|139868_140177_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AYK59993.1|140323_141190_-	stage IV sporulation protein FB	NA	NA	NA	NA	NA
AYK59994.1|141182_141977_-	stage IV sporulation protein FA	NA	NA	NA	NA	NA
AYK59995.1|142125_142932_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AYK59996.1|142933_143614_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AYK59997.1|143666_144185_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AYK59998.1|144181_145054_-	cell shape-determining protein MreC	NA	NA	NA	NA	NA
AYK59999.1|145084_146098_-	rod shape-determining protein	NA	NA	NA	NA	NA
AYK60000.1|146189_146885_-	JAB domain-containing protein	NA	NA	NA	NA	NA
AYK60001.1|146921_147491_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AYK60002.1|147643_148639_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AYK60003.1|148772_149519_-	prepilin peptidase	NA	NA	NA	NA	NA
AYK60004.1|149660_150953_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AYK60005.1|151012_153655_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.6	4.9e-161
AYK60006.1|154102_154294_+	hypothetical protein	NA	NA	NA	NA	NA
AYK60007.1|154312_155338_-|coat	spore coat protein YsxE	coat	NA	NA	NA	NA
AYK60008.1|155370_157098_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AYK60009.1|157228_158521_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AYK60010.1|158550_159525_-	porphobilinogen synthase	NA	NA	NA	NA	NA
AYK60011.1|159521_160310_-	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
AYK60012.1|160299_161244_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
AYK60013.1|161276_162107_-	protein HemX	NA	NA	NA	NA	NA
AYK60014.1|162114_163482_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AYK60015.1|163710_164208_+	hypothetical protein	NA	NA	NA	NA	NA
AYK60016.1|164229_164817_-	GTP-binding protein	NA	NA	NA	NA	NA
AYK60017.1|164813_167138_-|protease	Lon protease 1	protease	A0A0R6PGP8	Moraxella_phage	43.7	2.6e-182
AYK60018.1|167318_168977_-|protease	ATP-dependent protease LonB	protease	A0A1V0SHJ7	Hokovirus	33.7	8.1e-05
AYK60019.1|169130_170393_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	64.9	1.3e-148
>prophage 2
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	189187	231094	4199434	portal,holin,plate,terminase,capsid	uncultured_Caudovirales_phage(61.7%)	61	NA	NA
AYK60038.1|189187_190711_-	recombinase family protein	NA	A0A290FZV2	Caldibacillus_phage	54.3	2.7e-148
AYK60039.1|190843_191179_+	YolD-like family protein	NA	A0A1P8CWP2	Bacillus_phage	41.2	2.1e-13
AYK60040.1|191316_192282_+	hypothetical protein	NA	A0A1S5SBK8	Streptococcus_phage	27.4	1.2e-19
AYK60041.1|192265_192463_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60042.1|192565_193540_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	70.4	4.4e-67
AYK60043.1|193593_193857_-|holin	phage holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	67.8	1.2e-24
AYK60044.1|193872_194151_-	protein xhlA	NA	A0A2H4JD40	uncultured_Caudovirales_phage	68.5	2.8e-27
AYK60045.1|194214_194409_-	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	71.0	1.0e-20
AYK60046.1|194398_194860_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60047.1|196500_197130_-	hypothetical protein	NA	A0A2H4J4S3	uncultured_Caudovirales_phage	82.3	8.1e-91
AYK60048.1|197126_198302_-|plate	baseplate J/gp47 family protein	plate	A0A2H4J8D2	uncultured_Caudovirales_phage	72.4	1.6e-156
AYK60049.1|198294_198651_-	DUF2634 domain-containing protein	NA	A0A2H4J4S8	uncultured_Caudovirales_phage	61.0	2.6e-33
AYK60050.1|198647_198995_-	hypothetical protein	NA	A0A2H4JDQ2	uncultured_Caudovirales_phage	60.0	1.2e-30
AYK60051.1|198994_199960_-	hypothetical protein	NA	A0A2H4J4T4	uncultured_Caudovirales_phage	60.1	2.0e-104
AYK60052.1|199946_200303_-	hypothetical protein	NA	A0A2H4J6L1	uncultured_Caudovirales_phage	74.6	1.7e-45
AYK60053.1|200316_200871_-	LysM domain-containing protein	NA	A0A2H4JD33	uncultured_Caudovirales_phage	67.4	4.1e-62
AYK60054.1|200871_205530_-	hypothetical protein	NA	A0A2H4JA91	uncultured_Caudovirales_phage	57.7	8.7e-121
AYK63885.1|205688_205988_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60055.1|206085_206481_-	DUF3277 domain-containing protein	NA	A0A2H4J4R5	uncultured_Caudovirales_phage	64.3	1.7e-38
AYK60056.1|206495_207527_-	DUF3383 family protein	NA	A0A2H4J8B9	uncultured_Caudovirales_phage	65.4	3.0e-127
AYK60057.1|207532_208003_-	hypothetical protein	NA	A0A2H4J4R9	uncultured_Caudovirales_phage	62.0	2.9e-53
AYK60058.1|207959_208349_-	hypothetical protein	NA	A0A2H4JDP3	uncultured_Caudovirales_phage	55.3	2.3e-27
AYK60059.1|208348_208852_-	hypothetical protein	NA	A0A2H4J4S5	uncultured_Caudovirales_phage	56.4	4.4e-47
AYK60060.1|208856_209192_-	hypothetical protein	NA	A0A2H4J6J9	uncultured_Caudovirales_phage	58.6	1.9e-30
AYK60061.1|209206_210085_-	hypothetical protein	NA	A0A2H4JD21	uncultured_Caudovirales_phage	44.3	4.2e-53
AYK60062.1|210254_211178_-|capsid	phage major capsid protein	capsid	A0A2H4JCG0	uncultured_Caudovirales_phage	62.9	1.2e-103
AYK60063.1|211189_211768_-	DUF4355 domain-containing protein	NA	A0A2H4J4P4	uncultured_Caudovirales_phage	71.4	8.1e-69
AYK60064.1|211843_213235_-|portal	phage portal protein	portal	A0A2H4J4Q7	uncultured_Caudovirales_phage	68.8	1.6e-179
AYK60065.1|213246_214485_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0S0KEN9	Bacillus_phage	58.4	1.9e-139
AYK60066.1|214477_215170_-	hypothetical protein	NA	A0A2P1JTW4	Anoxybacillus_phage	63.6	2.5e-61
AYK60067.1|215332_215575_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60068.1|215701_216616_-	DUF2971 domain-containing protein	NA	NA	NA	NA	NA
AYK63886.1|216676_216889_-	DNA-binding protein	NA	A0A1Z1LZP5	Bacillus_phage	50.0	2.5e-12
AYK60069.1|216895_217087_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60070.1|217429_217945_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1L2JY33	Aeribacillus_phage	42.0	1.4e-27
AYK60071.1|218186_218393_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60072.1|218392_218575_-	hypothetical protein	NA	Q38080	Bacillus_phage	60.0	5.3e-11
AYK60073.1|218571_218808_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60074.1|218917_219757_-	hypothetical protein	NA	A0A0S2SXP3	Bacillus_phage	55.7	2.3e-85
AYK60075.1|219769_220018_-	hypothetical protein	NA	A0A2H4JA61	uncultured_Caudovirales_phage	42.3	1.2e-05
AYK60076.1|220014_220242_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60077.1|220238_220523_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60078.1|220555_220762_-	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	78.9	8.4e-21
AYK60079.1|220969_221179_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60080.1|221132_221591_-	DUF1064 domain-containing protein	NA	A0A2H4J891	uncultured_Caudovirales_phage	80.7	2.1e-59
AYK60081.1|221577_221859_-	hypothetical protein	NA	A0A219UQK6	Bacillus_phage	41.2	1.1e-10
AYK60082.1|222092_223040_-	ATP-binding protein	NA	A6XMI1	Bacillus_virus	52.2	1.4e-57
AYK60083.1|222924_223617_-	DnaD domain protein	NA	A0A2H4J6G9	uncultured_Caudovirales_phage	40.9	2.2e-41
AYK60084.1|223781_224696_-	recombination protein RecT	NA	S6AVW6	Thermus_phage	59.2	1.6e-87
AYK60085.1|224688_225639_-	hypothetical protein	NA	S6C475	Thermus_phage	61.7	4.7e-106
AYK60086.1|225638_225827_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60087.1|225929_226133_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60088.1|226092_226311_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60089.1|226307_226565_-	hypothetical protein	NA	A0A2H4J4M9	uncultured_Caudovirales_phage	41.0	2.2e-10
AYK60090.1|226561_227131_-	XRE family transcriptional regulator	NA	A0A2H4J884	uncultured_Caudovirales_phage	56.9	2.5e-62
AYK60091.1|227187_227916_-	phage regulatory protein	NA	A0A2H4J4N4	uncultured_Caudovirales_phage	60.9	1.8e-78
AYK60092.1|228180_228408_-	XRE family transcriptional regulator	NA	A8ATK0	Listeria_phage	54.2	1.3e-09
AYK60093.1|228580_228964_+	XRE family transcriptional regulator	NA	A8ATJ9	Listeria_phage	55.9	1.5e-10
AYK60094.1|229247_230285_+	hypothetical protein	NA	A0A290GDU0	Caldibacillus_phage	36.9	2.6e-17
AYK60095.1|230423_230900_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	35.8	2.0e-25
AYK60096.1|230911_231094_-	DNA-binding response regulator	NA	A0A290GJH9	Caldibacillus_phage	86.8	2.5e-16
>prophage 3
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	1169714	1193227	4199434	bacteriocin,protease,tRNA	Staphylococcus_phage(66.67%)	27	NA	NA
AYK60983.1|1169714_1171385_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AYK60984.1|1171381_1171810_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
AYK60985.1|1172122_1172254_+|bacteriocin	subtilosin A family bacteriocin	bacteriocin	NA	NA	NA	NA
AYK60986.1|1172210_1172363_+|bacteriocin	bacteriocin-like protein SboX	bacteriocin	NA	NA	NA	NA
AYK60987.1|1172387_1173734_+	subtilosin maturase AlbA	NA	NA	NA	NA	NA
AYK60988.1|1173746_1173908_+|bacteriocin	antilisterial bacteriocin subtilosin biosynthesis protein AlbB	bacteriocin	NA	NA	NA	NA
AYK60989.1|1173904_1174624_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.2	5.6e-19
AYK60990.1|1174616_1175927_+|bacteriocin	bacteriocin biosynthesis protein AlbD	bacteriocin	NA	NA	NA	NA
AYK63931.1|1175916_1177077_+	insulinase family protein	NA	NA	NA	NA	NA
AYK60991.1|1177081_1178362_+	insulinase family protein	NA	NA	NA	NA	NA
AYK60992.1|1178358_1179060_+|bacteriocin	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	bacteriocin	NA	NA	NA	NA
AYK60993.1|1179065_1180439_-	YncE family protein	NA	NA	NA	NA	NA
AYK60994.1|1180481_1181837_-	YncE family protein	NA	NA	NA	NA	NA
AYK60995.1|1181833_1182064_-	hypothetical protein	NA	NA	NA	NA	NA
AYK60996.1|1182066_1183212_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	43.0	1.4e-77
AYK60997.1|1183195_1183315_+	phosphatase RapF inhibitor	NA	NA	NA	NA	NA
AYK60998.1|1183567_1184047_+	hypothetical protein	NA	NA	NA	NA	NA
AYK60999.1|1184195_1184984_+	hypothetical protein	NA	NA	NA	NA	NA
AYK61000.1|1184970_1185645_+	hypothetical protein	NA	NA	NA	NA	NA
AYK61001.1|1185645_1186452_+	hypothetical protein	NA	NA	NA	NA	NA
AYK61002.1|1186454_1187102_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	40.0	7.7e-28
AYK61003.1|1187094_1187655_+	hypothetical protein	NA	NA	NA	NA	NA
AYK61004.1|1187703_1188576_-	agmatinase	NA	NA	NA	NA	NA
AYK61005.1|1188636_1189467_-	spermidine synthase	NA	NA	NA	NA	NA
AYK61006.1|1189667_1191743_+	penicillin-binding protein	NA	NA	NA	NA	NA
AYK61007.1|1192035_1192554_-	hypothetical protein	NA	NA	NA	NA	NA
AYK61008.1|1192567_1193227_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
>prophage 4
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	1222834	1271863	4199434	coat,holin	Enterobacteria_phage(25.0%)	51	NA	NA
AYK61036.1|1222834_1223290_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK61037.1|1223282_1224134_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.9	3.7e-38
AYK61038.1|1224147_1225095_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	43.8	4.4e-72
AYK61039.1|1225094_1225835_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	41.9	4.5e-48
AYK61040.1|1225859_1226879_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK61041.1|1226881_1227604_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK61042.1|1227596_1228718_-|coat	spore coat biosynthesis protein SpsE	coat	NA	NA	NA	NA
AYK61043.1|1228717_1229587_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYK61044.1|1229587_1230757_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A1D8KU11	Synechococcus_phage	28.1	1.2e-15
AYK61045.1|1230777_1232202_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
AYK61046.1|1232206_1232977_-	glycosyltransferase family 2 protein	NA	A0A0F7L2F7	uncultured_marine_virus	28.6	3.4e-06
AYK61047.1|1232969_1233149_-	hypothetical protein	NA	NA	NA	NA	NA
AYK61048.1|1233296_1233842_+|coat	spore coat protein GerQ	coat	NA	NA	NA	NA
AYK61049.1|1233885_1234257_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AYK61050.1|1234318_1235641_-	purine permease	NA	NA	NA	NA	NA
AYK63933.1|1235660_1235978_-	hypothetical protein	NA	NA	NA	NA	NA
AYK61051.1|1236145_1237516_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AYK61052.1|1237540_1238218_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	45.7	1.8e-48
AYK61053.1|1238230_1239037_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AYK61054.1|1239227_1240043_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AYK61055.1|1240133_1240382_-	hypothetical protein	NA	NA	NA	NA	NA
AYK61056.1|1240475_1241915_-	sucrose-6-phosphate hydrolase	NA	F8WPR5	Bacillus_phage	26.4	3.1e-21
AYK61057.1|1241911_1243297_-	PTS system sucrose transporter subunit IIBC	NA	NA	NA	NA	NA
AYK61058.1|1243598_1244369_+	transporter	NA	NA	NA	NA	NA
AYK61059.1|1244407_1245238_-	transcription antiterminator	NA	NA	NA	NA	NA
AYK63934.1|1245277_1245580_-	hypothetical protein	NA	NA	NA	NA	NA
AYK61060.1|1246109_1248530_+	peptidase S8	NA	A0A217EQY2	Bacillus_phage	38.2	5.3e-21
AYK61061.1|1248567_1249569_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AYK61062.1|1249742_1250492_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AYK61063.1|1250598_1251780_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
AYK61064.1|1252276_1252540_+	spore morphogenesis/germination protein YwcE	NA	NA	NA	NA	NA
AYK61065.1|1252581_1252956_-	quinol oxidase subunit 4	NA	NA	NA	NA	NA
AYK61066.1|1252957_1253572_-	Quinol oxidase subunit 3	NA	NA	NA	NA	NA
AYK61067.1|1253585_1255535_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AYK63935.1|1255562_1256528_-	cytochrome aa3 quinol oxidase subunit II	NA	NA	NA	NA	NA
AYK63936.1|1257043_1257289_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AYK61068.1|1257359_1258901_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AYK61069.1|1258904_1260077_-	galactokinase	NA	NA	NA	NA	NA
AYK61070.1|1260159_1260543_-	GtrA family protein	NA	NA	NA	NA	NA
AYK61071.1|1260560_1261232_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYK61072.1|1261586_1261745_+	DNA-binding anti-repressor SinI	NA	NA	NA	NA	NA
AYK61073.1|1262187_1262496_+	DUF485 domain-containing protein	NA	NA	NA	NA	NA
AYK61074.1|1262492_1264034_+	cation acetate symporter	NA	NA	NA	NA	NA
AYK61075.1|1264064_1264667_-	DsbA family protein	NA	NA	NA	NA	NA
AYK61076.1|1264949_1266200_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA	NA
AYK61077.1|1266218_1267376_-	Efem/EfeO family lipoprotein	NA	NA	NA	NA	NA
AYK61078.1|1267372_1268818_-	iron transporter	NA	NA	NA	NA	NA
AYK61079.1|1268974_1269643_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
AYK61080.1|1269639_1270458_-	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
AYK61081.1|1270465_1271371_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYK61082.1|1271476_1271863_+|holin	holin-like protein CidA	holin	NA	NA	NA	NA
>prophage 5
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	2219121	2227487	4199434		Synechococcus_phage(50.0%)	8	NA	NA
AYK61939.1|2219121_2220417_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.7	4.5e-19
AYK61940.1|2220490_2221216_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3G7P8	Synechococcus_phage	44.1	1.2e-45
AYK61941.1|2221208_2221463_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AYK61942.1|2221459_2222143_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AYK61943.1|2222126_2224355_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.0	7.2e-158
AYK61944.1|2224330_2225761_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	1.2e-52
AYK61945.1|2225862_2226903_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	42.0	2.8e-64
AYK61946.1|2226899_2227487_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	41.0	2.4e-28
>prophage 6
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	2727189	2761087	4199434	coat,tRNA	Planktothrix_phage(20.0%)	39	NA	NA
AYK63991.1|2727189_2728182_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AYK62417.1|2728925_2730563_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK62418.1|2730670_2731606_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AYK62419.1|2732527_2733604_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	2.1e-17
AYK62420.1|2733605_2734523_+	oligopeptide transport ATP-binding protein OppF	NA	M1HP82	Acanthocystis_turfacea_Chlorella_virus	24.6	1.2e-05
AYK62421.1|2734629_2735847_+	MFS transporter	NA	NA	NA	NA	NA
AYK62422.1|2736010_2736589_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYK62423.1|2736769_2737165_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
AYK62424.1|2737207_2737864_-	TerC family protein	NA	A0A2R2YAT9	Pseudomonas_phage	38.0	1.1e-29
AYK62425.1|2738033_2738174_+	hypothetical protein	NA	NA	NA	NA	NA
AYK62426.1|2738140_2738797_+	adaptor protein MecA	NA	NA	NA	NA	NA
AYK62427.1|2738956_2740108_+	competence protein CoiA	NA	NA	NA	NA	NA
AYK62428.1|2740154_2742167_+	oligoendopeptidase F	NA	NA	NA	NA	NA
AYK62429.1|2742204_2742372_-	hypothetical protein	NA	NA	NA	NA	NA
AYK62430.1|2742467_2742668_-	hypothetical protein	NA	NA	NA	NA	NA
AYK62431.1|2742686_2743586_-	DsbA family protein	NA	NA	NA	NA	NA
AYK62432.1|2743582_2743981_-	group 2 truncated hemoglobin YjbI	NA	NA	NA	NA	NA
AYK63992.1|2744235_2744781_-	lytic transglycosylase domain-containing protein	NA	A0A1P8CWQ1	Bacillus_phage	60.4	3.7e-39
AYK62433.1|2744984_2745557_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
AYK62434.1|2745681_2746050_+	hypothetical protein	NA	NA	NA	NA	NA
AYK62435.1|2746078_2746714_+	GTP pyrophosphokinase YjbM	NA	NA	NA	NA	NA
AYK62436.1|2746732_2747533_+	NAD(+) kinase	NA	NA	NA	NA	NA
AYK63993.1|2747595_2748447_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AYK62437.1|2748459_2749194_-	bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetrical]	NA	M4Q4T6	Vibrio_phage	25.0	3.2e-06
AYK62438.1|2749428_2751273_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AYK62439.1|2751521_2752232_+	thiaminase II	NA	NA	NA	NA	NA
AYK62440.1|2752206_2752824_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
AYK62441.1|2752807_2753917_+	glycine oxidase ThiO	NA	NA	NA	NA	NA
AYK63994.1|2753916_2754117_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
AYK62442.1|2754113_2754884_+	thiazole synthase	NA	NA	NA	NA	NA
AYK62443.1|2754880_2755891_+	thiazole biosynthesis adenylyltransferase ThiF	NA	NA	NA	NA	NA
AYK62444.1|2755909_2756725_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AYK62445.1|2756860_2757637_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AYK62446.1|2757737_2758421_+|coat	spore coat protein	coat	NA	NA	NA	NA
AYK62447.1|2758513_2758963_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK62448.1|2759090_2759579_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK62449.1|2759730_2760243_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK62450.1|2760337_2760661_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK62451.1|2760700_2761087_-|coat	spore coat protein	coat	NA	NA	NA	NA
>prophage 7
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	2825489	2855083	4199434	plate,terminase,portal	Bacillus_phage(29.63%)	38	NA	NA
AYK62517.1|2825489_2826761_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	A0A1V0SEI6	Indivirus	37.1	8.6e-15
AYK62518.1|2826905_2828042_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	47.4	8.3e-94
AYK62519.1|2828031_2828166_+	phosphatase RapA inhibitor PhrA	NA	NA	NA	NA	NA
AYK62520.1|2828196_2828454_-	hypothetical protein	NA	NA	NA	NA	NA
AYK62521.1|2828574_2829528_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A218KC88	Bacillus_phage	74.1	7.3e-67
AYK62522.1|2829567_2829945_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	42.3	6.1e-17
AYK62523.1|2830050_2830653_+	hypothetical protein	NA	F8WQ53	Bacillus_phage	49.2	3.8e-45
AYK62524.1|2830729_2831566_+	manganese catalase family protein	NA	NA	NA	NA	NA
AYK62525.1|2831609_2832206_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	51.7	8.1e-40
AYK62526.1|2832368_2832710_-	transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	45.8	1.3e-18
AYK62527.1|2832887_2833067_+	hypothetical protein	NA	NA	NA	NA	NA
AYK62528.1|2833053_2833890_+	phage-like element PBSX protein XkdB	NA	S6BFM4	Thermus_phage	28.2	1.8e-24
AYK62529.1|2833789_2834590_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	51.7	5.0e-61
AYK62530.1|2834589_2834757_+	hypothetical protein	NA	NA	NA	NA	NA
AYK62531.1|2834841_2835192_+	phage-like element PBSX protein XkdD	NA	NA	NA	NA	NA
AYK62532.1|2835195_2835390_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
AYK62533.1|2835510_2836020_+	positive control factor	NA	A0A1L2JY33	Aeribacillus_phage	38.6	1.9e-21
AYK62534.1|2836135_2836933_+|terminase	PBSX phage terminase small subunit	terminase	A0A0S2MVB6	Bacillus_phage	50.2	8.0e-59
AYK62535.1|2836929_2838231_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2P1JTW5	Anoxybacillus_phage	60.2	2.4e-153
AYK62536.1|2838234_2839722_+	phage-like element PBSX protein XkdE	NA	A0A1B1P7C8	Bacillus_phage	55.7	1.7e-139
AYK62537.1|2839741_2840569_+	phage-like element PBSX protein XkdF	NA	A0A1B1P7E4	Bacillus_phage	58.7	2.1e-54
AYK62538.1|2840594_2841530_+	phage-like element PBSX protein XkdG	NA	A0A1B1P7E3	Bacillus_phage	63.8	1.1e-104
AYK62539.1|2841551_2841935_+	DUF3199 family protein	NA	A0A1B1P7D6	Bacillus_phage	40.5	1.4e-13
AYK62540.1|2841931_2842288_+	phage-like element PBSX protein XkdH	NA	NA	NA	NA	NA
AYK62541.1|2842284_2842770_+	phage-like element PBSX protein XkdI	NA	A0A249XXA4	Clostridium_phage	47.0	2.1e-38
AYK62542.1|2842782_2843223_+|portal	phage portal protein	portal	NA	NA	NA	NA
AYK62543.1|2843226_2843445_+	hypothetical protein	NA	NA	NA	NA	NA
AYK62544.1|2843441_2844842_+	phage-like element PBSX protein XkdK	NA	A0A0A7S087	Clostridium_phage	39.3	2.3e-77
AYK62545.1|2844843_2845287_+	phage-like element PBSX protein XkdM	NA	A0A0K2CNG3	Brevibacillus_phage	45.2	8.4e-26
AYK62546.1|2845377_2845824_+|portal	phage portal protein	portal	A0A0A7RTY8	Clostridium_phage	37.7	5.9e-11
AYK62547.1|2845865_2846006_+	hypothetical protein	NA	NA	NA	NA	NA
AYK62548.1|2846006_2851088_+|portal	phage portal protein	portal	A0A1L2JY60	Aeribacillus_phage	43.8	1.1e-41
AYK62549.1|2851080_2851740_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A8WJR4	Clostridium_phage	33.2	1.1e-24
AYK62550.1|2851755_2852733_+	phage-like element PBSX protein XkdQ	NA	H7BV96	unidentified_phage	32.6	1.0e-39
AYK62551.1|2852732_2852999_+	DUF2577 domain-containing protein	NA	S6C459	Thermus_phage	36.4	1.7e-05
AYK62552.1|2853056_2853482_+	DUF2634 domain-containing protein	NA	A0A2H4J6K5	uncultured_Caudovirales_phage	38.0	6.6e-12
AYK62553.1|2853474_2854521_+|plate	baseplate J/gp47 family protein	plate	S6AVU3	Thermus_phage	44.0	2.4e-71
AYK62554.1|2854504_2855083_+	DUF2313 domain-containing protein	NA	A0A2H4J717	uncultured_Caudovirales_phage	33.1	5.1e-15
>prophage 8
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	3370770	3477861	4199434	holin,protease,integrase,tRNA,tail	Bacillus_phage(91.09%)	137	3456375:3456393	3477399:3477417
AYK62996.1|3370770_3372099_-|protease	serine protease	protease	A0A1B0T6A2	Bacillus_phage	33.2	1.6e-27
AYK62997.1|3372323_3372557_+	hypothetical protein	NA	NA	NA	NA	NA
AYK62998.1|3372836_3373544_+	hypothetical protein	NA	F8WQ53	Bacillus_phage	56.9	3.2e-51
AYK62999.1|3373613_3374066_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AYK63000.1|3374079_3374433_-	multidrug resistance protein EbrB	NA	NA	NA	NA	NA
AYK63001.1|3374446_3374764_-	multidrug resistance protein EbrA	NA	NA	NA	NA	NA
AYK63002.1|3374899_3375175_-	hypothetical protein	NA	NA	NA	NA	NA
AYK63003.1|3375263_3375677_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63004.1|3375776_3376721_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AYK63005.1|3376760_3376982_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AYK63006.1|3377177_3377450_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63007.1|3377531_3377762_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63008.1|3378004_3378397_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	G3MBF1	Bacillus_virus	58.3	2.5e-29
AYK63009.1|3378356_3380459_+	ribonucleotide-diphosphate reductase subunit alpha	NA	U5PY35	Bacillus_phage	86.8	0.0e+00
AYK63010.1|3380476_3381466_+	ribonucleoside-diphosphate reductase subunit beta	NA	F8WQ21	Bacillus_phage	83.5	1.9e-155
AYK63011.1|3381515_3382136_+	hypothetical protein	NA	A0A127AYS1	Bacillus_phage	48.4	1.6e-46
AYK63012.1|3382199_3382967_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	49.5	2.2e-50
AYK63013.1|3383606_3384248_+	AAA family ATPase	NA	G3MAX6	Bacillus_virus	42.5	8.5e-27
AYK63014.1|3384271_3384565_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYK63015.1|3384998_3385532_+	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	99.4	5.1e-94
AYK63016.1|3385655_3386546_-	endonuclease	NA	O64020	Bacillus_phage	93.9	2.6e-106
AYK63017.1|3386726_3386978_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63018.1|3387064_3387598_+	SMI1/KNR4 family protein	NA	A0A1P8CWM2	Bacillus_phage	92.6	8.1e-07
AYK63019.1|3387737_3389489_+	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	88.5	5.9e-280
AYK63020.1|3389490_3390087_+	SMI1/KNR4 family protein	NA	O64025	Bacillus_phage	84.0	2.7e-88
AYK63021.1|3390413_3390497_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AYK63022.1|3390758_3391118_+	hypothetical protein	NA	A0A1P8CWJ9	Bacillus_phage	100.0	3.5e-62
AYK63023.1|3391159_3391495_-	hypothetical protein	NA	A0A1P8CWM9	Bacillus_phage	100.0	4.2e-54
AYK63024.1|3391668_3392001_+	YolD-like family protein	NA	A0A1P8CWP2	Bacillus_phage	97.3	3.2e-54
AYK63025.1|3391993_3393244_+	UV damage repair protein UvrX	NA	O64031	Bacillus_phage	97.4	1.2e-234
AYK63026.1|3393374_3394595_+	MFS transporter	NA	NA	NA	NA	NA
AYK63027.1|3394606_3395437_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AYK63028.1|3395441_3396587_+	ThiF family adenylyltransferase	NA	A0A1V0SCZ9	Indivirus	20.6	7.3e-05
AYK63029.1|3396759_3397611_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AYK63030.1|3397633_3398167_-	N-acetyltransferase	NA	NA	NA	NA	NA
AYK63031.1|3398456_3399617_-	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	25.5	3.8e-33
AYK63032.1|3399772_3400024_-|holin	phage holin	holin	A0A1P8CWN5	Bacillus_phage	97.6	2.1e-37
AYK63033.1|3400044_3400437_-	hypothetical protein	NA	A0A1P8CWP1	Bacillus_phage	98.5	1.4e-61
AYK63034.1|3400551_3401595_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A1J0MS59	Bacillus_phage	59.6	1.6e-99
AYK63035.1|3401773_3404008_-	hypothetical protein	NA	A0A0A0RUQ7	Bacillus_phage	38.9	9.1e-68
AYK64016.1|3404020_3404839_-	hypothetical protein	NA	O64043	Bacillus_phage	65.7	9.6e-100
AYK63036.1|3404853_3407496_-	hypothetical protein	NA	A0A1P8CWQ0	Bacillus_phage	93.6	0.0e+00
AYK63037.1|3407508_3408270_-|tail	phage tail protein	tail	A0A1P8CWP8	Bacillus_phage	97.9	8.3e-130
AYK63038.1|3408310_3415201_-|tail	phage tail tape measure protein	tail	A0A1P8CWQ1	Bacillus_phage	74.4	0.0e+00
AYK63039.1|3415254_3415938_-	immunity protein	NA	Q37974	Bacillus_phage	94.3	3.8e-110
AYK63040.1|3416298_3417132_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63041.1|3417151_3417346_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63042.1|3417502_3417913_-	hypothetical protein	NA	NA	NA	NA	NA
AYK64017.1|3418044_3419046_-|integrase	site-specific integrase	integrase	A0A1P8CWP6	Bacillus_phage	99.1	2.6e-192
AYK63043.1|3419059_3419479_-	hypothetical protein	NA	A0A1P8CWQ4	Bacillus_phage	86.3	7.6e-61
AYK63044.1|3419478_3419967_-	hypothetical protein	NA	A0A1P8CWQ6	Bacillus_phage	73.0	7.0e-58
AYK63045.1|3420004_3420145_-	XkdX family protein	NA	NA	NA	NA	NA
AYK63046.1|3420146_3420566_-	hypothetical protein	NA	NA	NA	NA	NA
AYK63047.1|3420562_3421507_-	hypothetical protein	NA	A0A1P8CWR7	Bacillus_phage	35.5	1.3e-20
AYK63048.1|3421506_3421863_-	hypothetical protein	NA	O64055	Bacillus_phage	90.7	5.0e-53
AYK63049.1|3421926_3422154_-	hypothetical protein	NA	A0A1P8CWR2	Bacillus_phage	98.7	5.4e-37
AYK63050.1|3422153_3422765_-	hypothetical protein	NA	A0A1P8CWQ5	Bacillus_phage	99.5	7.5e-65
AYK63051.1|3422782_3423580_-	hypothetical protein	NA	A0A1P8CWR0	Bacillus_phage	71.7	1.9e-89
AYK63052.1|3423622_3424333_-	hypothetical protein	NA	A0A1P8CWQ7	Bacillus_phage	100.0	1.8e-131
AYK63053.1|3424329_3424836_-	hypothetical protein	NA	O64060	Bacillus_phage	100.0	5.9e-92
AYK63054.1|3424832_3425483_-	hypothetical protein	NA	A0A1P8CWR8	Bacillus_phage	99.1	1.3e-120
AYK63055.1|3425466_3425721_-	hypothetical protein	NA	A0A1P8CWS7	Bacillus_phage	92.9	1.1e-35
AYK63056.1|3425717_3426113_-	hypothetical protein	NA	A0A1P8CWR5	Bacillus_phage	95.4	1.1e-66
AYK63057.1|3426127_3426598_-	hypothetical protein	NA	A0A1P8CWS5	Bacillus_phage	99.4	1.1e-81
AYK63058.1|3426633_3427650_-	hypothetical protein	NA	A0A1P8CWR9	Bacillus_phage	99.7	2.9e-186
AYK63059.1|3427688_3428225_-	hypothetical protein	NA	A0A1P8CWS2	Bacillus_phage	99.4	1.4e-94
AYK63060.1|3428249_3429686_-	hypothetical protein	NA	A0A1P8CWR1	Bacillus_phage	91.4	4.2e-244
AYK63061.1|3429716_3431237_-	hypothetical protein	NA	O64068	Bacillus_phage	98.6	5.6e-279
AYK63062.1|3431254_3433024_-	hypothetical protein	NA	O64069	Bacillus_phage	99.8	0.0e+00
AYK63063.1|3433010_3433931_-	hypothetical protein	NA	A0A1P8CWS6	Bacillus_phage	99.0	6.6e-174
AYK63064.1|3434033_3434534_-	hypothetical protein	NA	A0A1P8CWS3	Bacillus_phage	97.0	3.7e-86
AYK63065.1|3434566_3434896_-	hypothetical protein	NA	NA	NA	NA	NA
AYK63066.1|3434932_3435388_-	hypothetical protein	NA	NA	NA	NA	NA
AYK63067.1|3435401_3436601_-	metallophosphatase family protein	NA	W5RV85	Staphylococcus_phage	40.8	7.8e-66
AYK64018.1|3436612_3436822_-	hypothetical protein	NA	NA	NA	NA	NA
AYK63068.1|3438493_3438772_-	SPBc2 prophage-derived DNA-binding protein HU 2	NA	A0A1P8CWT5	Bacillus_phage	76.9	1.2e-30
AYK63069.1|3439023_3441546_-	hypothetical protein	NA	O64076	Bacillus_phage	90.7	0.0e+00
AYK63070.1|3441590_3441770_-	hypothetical protein	NA	A0A1P8CWT4	Bacillus_phage	100.0	3.1e-27
AYK63071.1|3442314_3442644_+	hypothetical protein	NA	A0A1P8CWU7	Bacillus_phage	95.4	4.4e-56
AYK63072.1|3443542_3443719_+	hypothetical protein	NA	O64080	Bacillus_phage	92.3	4.4e-10
AYK63073.1|3443737_3443989_+	hypothetical protein	NA	A0A1P8CWU4	Bacillus_phage	94.4	9.3e-30
AYK63074.1|3444033_3444192_+	hypothetical protein	NA	A0A1P8CWU3	Bacillus_phage	65.4	2.5e-09
AYK63075.1|3444279_3445497_+	hypothetical protein	NA	A0A1P8CWT6	Bacillus_phage	100.0	2.9e-233
AYK63076.1|3445809_3447693_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
AYK63077.1|3447747_3449349_+	DUF4942 domain-containing protein	NA	A0A0U4JGM1	Vibrio_phage	36.0	2.8e-10
AYK63078.1|3449525_3449750_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63079.1|3449772_3449952_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63080.1|3450115_3450313_+	hypothetical protein	NA	NA	NA	NA	NA
AYK64019.1|3450322_3450550_+	XRE family transcriptional regulator	NA	O64085	Bacillus_phage	87.8	4.9e-30
AYK63081.1|3450644_3451397_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63082.1|3451433_3451736_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63083.1|3451870_3452050_-	hypothetical protein	NA	A0A1P8CWV7	Bacillus_phage	96.6	3.6e-28
AYK63084.1|3452120_3452372_+	hypothetical protein	NA	A0A1P8CWV6	Bacillus_phage	98.8	3.5e-37
AYK63085.1|3452375_3452591_+	hypothetical protein	NA	O64089	Bacillus_phage	88.7	3.3e-28
AYK63086.1|3452601_3452733_+	hypothetical protein	NA	A0A1P8CWV9	Bacillus_phage	97.7	1.4e-18
AYK63087.1|3452791_3453505_+	hypothetical protein	NA	A0A1P8CWW3	Bacillus_phage	100.0	4.0e-134
AYK63088.1|3453494_3454190_+	hypothetical protein	NA	A0A1P8CWW4	Bacillus_phage	100.0	1.5e-125
AYK63089.1|3454238_3454577_+	hypothetical protein	NA	A0A1P8CWV8	Bacillus_phage	100.0	7.0e-57
AYK63090.1|3454722_3455877_+	hypothetical protein	NA	NA	NA	NA	NA
3456375:3456393	attL	TAGAATAAAAATAAAATTA	NA	NA	NA	NA
AYK63091.1|3456463_3456670_+	hypothetical protein	NA	A0A1P8CWW7	Bacillus_phage	100.0	1.4e-31
AYK63092.1|3456686_3456932_+	hypothetical protein	NA	A0A1P8CWW1	Bacillus_phage	100.0	3.9e-41
AYK63093.1|3457136_3458198_+|integrase	integrase	integrase	A0A1P8CWW9	Bacillus_phage	99.7	1.9e-201
AYK63094.1|3458282_3459629_+	hypothetical protein	NA	A0A1P8CWX1	Bacillus_phage	99.8	9.8e-251
AYK63095.1|3459647_3460619_+|integrase	integrase	integrase	A0A1P8CWX4	Bacillus_phage	98.8	1.2e-178
AYK63096.1|3460849_3461071_-	XRE family transcriptional regulator	NA	A0A1P8CWW6	Bacillus_phage	100.0	1.1e-34
AYK63097.1|3461239_3461539_+	hypothetical protein	NA	A0A1P8CWX3	Bacillus_phage	80.8	3.4e-39
AYK63098.1|3461612_3461852_+	hypothetical protein	NA	A0A1P8CWW5	Bacillus_phage	77.2	4.8e-28
AYK63099.1|3461969_3462209_+	hypothetical protein	NA	A0A1P8CWW8	Bacillus_phage	74.7	1.7e-28
AYK63100.1|3462241_3462607_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63101.1|3462603_3462834_+	hypothetical protein	NA	J9PL10	Bacillus_phage	42.9	4.0e-11
AYK63102.1|3462830_3463046_+	hypothetical protein	NA	A0A0A7AR03	Bacillus_phage	61.5	9.1e-18
AYK63103.1|3463045_3463426_+	hypothetical protein	NA	NA	NA	NA	NA
AYK64020.1|3463458_3463770_+	hypothetical protein	NA	A0A1P8CWX8	Bacillus_phage	82.5	9.7e-45
AYK63104.1|3463766_3464105_+	hypothetical protein	NA	O64111	Bacillus_phage	87.5	6.4e-50
AYK64021.1|3464111_3464519_+	hypothetical protein	NA	A0A1P8CWY3	Bacillus_phage	92.6	1.3e-68
AYK63105.1|3464560_3465319_+	phage regulatory protein/antirepressor Ant	NA	A0A1P8CWY0	Bacillus_phage	81.3	2.5e-110
AYK64022.1|3465374_3465578_+	hypothetical protein	NA	O64115	Bacillus_phage	95.5	1.5e-33
AYK63106.1|3465623_3465860_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63107.1|3465909_3466248_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63108.1|3466358_3466748_+	hypothetical protein	NA	A0A0A8WEI8	Clostridium_phage	45.4	2.0e-23
AYK63109.1|3466928_3467150_+	hypothetical protein	NA	O64123	Bacillus_phage	94.4	2.8e-30
AYK63110.1|3467166_3467541_-	hypothetical protein	NA	A0A1P8CWZ2	Bacillus_phage	64.5	7.3e-39
AYK63111.1|3467664_3468069_+	hypothetical protein	NA	K4JWE2	Caulobacter_phage	39.8	8.8e-22
AYK63112.1|3468101_3468617_+	hypothetical protein	NA	A0A1Z1DA37	Bacillus_phage	54.7	2.2e-46
AYK63113.1|3468638_3468947_+	hypothetical protein	NA	O64125	Bacillus_phage	89.2	2.7e-47
AYK63114.1|3468939_3469296_+	hypothetical protein	NA	O64126	Bacillus_phage	90.7	1.1e-44
AYK63115.1|3469297_3469648_+	hypothetical protein	NA	O64127	Bacillus_phage	86.2	1.4e-52
AYK63116.1|3469761_3470121_-	DUF2513 domain-containing protein	NA	A0A2I7SCV0	Paenibacillus_phage	44.7	5.2e-18
AYK63117.1|3470628_3471441_-	ATP-dependent DNA ligase	NA	O64130	Bacillus_phage	95.9	3.8e-149
AYK63118.1|3471510_3472185_-	SOS response-associated peptidase	NA	A0A1P8CX02	Bacillus_phage	97.9	1.3e-78
AYK63119.1|3472255_3472483_+	hypothetical protein	NA	O64132	Bacillus_phage	96.0	4.7e-33
AYK63120.1|3472535_3472931_+	hypothetical protein	NA	O64133	Bacillus_phage	94.7	7.9e-68
AYK63121.1|3473028_3473853_+	hypothetical protein	NA	O64134	Bacillus_phage	93.8	8.6e-141
AYK63122.1|3473849_3475610_+	right-handed parallel beta-helix repeat-containing protein	NA	O64135	Bacillus_phage	96.4	0.0e+00
AYK63123.1|3475695_3475989_+	hypothetical protein	NA	O64136	Bacillus_phage	94.8	1.2e-44
AYK63124.1|3476060_3476441_+	hypothetical protein	NA	A0A1P8CX06	Bacillus_phage	96.8	9.3e-66
AYK64023.1|3477495_3477861_+	hypothetical protein	NA	A0A1P8CX10	Bacillus_phage	92.5	1.8e-58
3477399:3477417	attR	TAGAATAAAAATAAAATTA	NA	NA	NA	NA
>prophage 9
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	3480894	3514101	4199434		Bacillus_phage(91.49%)	58	NA	NA
AYK63128.1|3480894_3482376_+	DNA helicase	NA	A0A2R2ZGP1	Clostridioides_phage	30.0	2.9e-54
AYK63129.1|3482397_3483414_+	hypothetical protein	NA	A0A1W6JK26	Lactococcus_phage	25.3	3.7e-16
AYK63130.1|3483430_3484492_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63131.1|3484501_3486226_+	hypothetical protein	NA	A0A2H4J041	uncultured_Caudovirales_phage	55.5	1.7e-178
AYK64024.1|3486288_3486939_+	hypothetical protein	NA	A0A1P8CX16	Bacillus_phage	49.0	2.7e-20
AYK63132.1|3486950_3487166_+	hypothetical protein	NA	O64150	Bacillus_phage	97.2	3.9e-37
AYK63133.1|3487158_3487314_+	hypothetical protein	NA	A0A1P8CX36	Bacillus_phage	96.1	1.7e-21
AYK63134.1|3487313_3487811_+	hypothetical protein	NA	A0A1P8CX28	Bacillus_phage	90.9	4.6e-81
AYK63135.1|3487850_3488198_-	hypothetical protein	NA	NA	NA	NA	NA
AYK64025.1|3488363_3489089_+	site-specific DNA-methyltransferase	NA	W8EBG5	Geobacillus_phage	59.3	5.9e-77
AYK63136.1|3489126_3489336_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63137.1|3489379_3489598_+	hypothetical protein	NA	A0A1P8CX26	Bacillus_phage	98.6	9.5e-31
AYK63138.1|3489600_3489966_+	hypothetical protein	NA	O64156	Bacillus_phage	95.0	4.3e-60
AYK63139.1|3490005_3490233_+	hypothetical protein	NA	A0A1P8CX31	Bacillus_phage	96.0	2.5e-34
AYK63140.1|3490245_3490428_+	hypothetical protein	NA	A0A1P8CX23	Bacillus_phage	88.3	4.6e-23
AYK63141.1|3490504_3490696_+	hypothetical protein	NA	A0A1P8CX22	Bacillus_phage	95.2	6.6e-28
AYK63142.1|3490747_3491011_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63143.1|3491035_3491584_+	metallophosphoesterase	NA	A0A223LD99	Bacillus_phage	59.6	2.8e-55
AYK63144.1|3491983_3492304_+	hypothetical protein	NA	A0A1P8CX20	Bacillus_phage	78.3	1.1e-43
AYK63145.1|3492316_3492724_+	hypothetical protein	NA	A0A1P8CX27	Bacillus_phage	65.7	3.3e-37
AYK63146.1|3492738_3493086_+	hypothetical protein	NA	O64164	Bacillus_phage	89.6	2.3e-50
AYK63147.1|3493183_3493462_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63148.1|3493500_3493824_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63149.1|3493871_3494063_+	hypothetical protein	NA	S6BUY9	Bacillus_phage	50.0	4.7e-10
AYK64026.1|3494077_3494290_+	DUF1653 domain-containing protein	NA	A0A1P8CX21	Bacillus_phage	80.0	1.1e-28
AYK63150.1|3494303_3494438_+	hypothetical protein	NA	O64168	Bacillus_phage	90.9	1.8e-16
AYK63151.1|3494457_3494652_+	hypothetical protein	NA	O64169	Bacillus_phage	100.0	7.6e-32
AYK63152.1|3494692_3494875_+	hypothetical protein	NA	F8WPL1	Bacillus_phage	70.0	2.8e-20
AYK63153.1|3494956_3495286_+	hypothetical protein	NA	O64171	Bacillus_phage	99.1	2.9e-55
AYK63154.1|3495309_3495705_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A1P8CX56	Bacillus_phage	92.4	3.4e-63
AYK64027.1|3495712_3496390_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A1P8CX40	Bacillus_phage	88.4	3.0e-107
AYK63155.1|3496493_3497177_+	HNH endonuclease	NA	L0LCB9	Bacillus_phage	57.6	2.6e-50
AYK63156.1|3499948_3500470_+	HNH endonuclease	NA	A0A1P8CX39	Bacillus_phage	91.9	4.5e-87
AYK63157.1|3501050_3501293_+	thioredoxin	NA	A0A1P8CX24	Bacillus_phage	98.8	4.0e-38
AYK63158.1|3501338_3501767_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A1P8CX51	Bacillus_phage	94.4	2.8e-74
AYK63159.1|3501841_3502291_+	transcriptional regulator	NA	A0A1P8CX48	Bacillus_phage	89.9	5.8e-75
AYK63160.1|3502330_3502576_-	hypothetical protein	NA	A0A1P8CX50	Bacillus_phage	72.8	1.9e-19
AYK63161.1|3502730_3502886_+	hypothetical protein	NA	A0A1P8CX64	Bacillus_phage	86.3	1.3e-18
AYK63162.1|3502903_3503188_+	hypothetical protein	NA	O64180	Bacillus_phage	78.7	4.1e-34
AYK63163.1|3503196_3503790_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
AYK63164.1|3503833_3504673_+	thymidylate synthase	NA	A0A1P8CX42	Bacillus_phage	96.8	1.2e-161
AYK63165.1|3504738_3505482_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
AYK63166.1|3505620_3505971_+	hypothetical protein	NA	A0A1P8CX43	Bacillus_phage	94.9	1.6e-51
AYK63167.1|3506720_3506900_+	hypothetical protein	NA	A0A1P8CX65	Bacillus_phage	89.6	1.9e-16
AYK63168.1|3506967_3507162_-	hypothetical protein	NA	NA	NA	NA	NA
AYK63169.1|3507455_3507674_-	small, acid-soluble spore protein C	NA	Q77YX0	Bacillus_phage	100.0	5.6e-31
AYK63170.1|3507793_3508621_+	metallophosphoesterase	NA	O64184	Bacillus_phage	95.6	1.6e-163
AYK63171.1|3508664_3508856_+	hypothetical protein	NA	A0A1P8CX54	Bacillus_phage	100.0	1.0e-33
AYK63172.1|3508892_3509054_+	hypothetical protein	NA	A0A1P8CX49	Bacillus_phage	87.0	1.3e-13
AYK63173.1|3509037_3509460_+	hypothetical protein	NA	NA	NA	NA	NA
AYK64028.1|3509524_3509857_+	hypothetical protein	NA	A0A1P8CX53	Bacillus_phage	58.0	2.8e-26
AYK63174.1|3509837_3510383_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63175.1|3510386_3510560_+	hypothetical protein	NA	O64190	Bacillus_phage	91.2	1.2e-20
AYK63176.1|3510769_3510982_+	hypothetical protein	NA	O64192	Bacillus_phage	100.0	5.2e-34
AYK63177.1|3511065_3511251_+	hypothetical protein	NA	O64193	Bacillus_phage	100.0	2.1e-26
AYK63178.1|3511252_3511495_-	XRE family transcriptional regulator	NA	O64194	Bacillus_phage	98.8	3.6e-39
AYK63179.1|3511569_3512169_+	hypothetical protein	NA	O64195	Bacillus_phage	89.8	1.1e-92
AYK63180.1|3512400_3514101_+	recombinase family protein	NA	B8R885	Bacillus_phage	24.3	4.7e-16
>prophage 10
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	3714827	3724436	4199434		Bacillus_phage(75.0%)	15	NA	NA
AYK63344.1|3714827_3717428_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	34.5	5.6e-45
AYK63345.1|3717885_3718527_-	endo-1,4-beta-xylanase A	NA	NA	NA	NA	NA
AYK63346.1|3718862_3719057_+	hypothetical protein	NA	O64196	Bacillus_phage	52.8	1.1e-06
AYK63347.1|3719159_3719399_-	NINE protein	NA	M4ZS56	Bacillus_phage	65.8	1.2e-18
AYK63348.1|3719569_3719908_+	XRE family transcriptional regulator	NA	A0A0P0IZG9	Lactobacillus_phage	31.7	5.5e-09
AYK64035.1|3719941_3720298_-	hypothetical protein	NA	NA	NA	NA	NA
AYK63349.1|3720399_3720684_-	hypothetical protein	NA	NA	NA	NA	NA
AYK63350.1|3720717_3721047_-	HIT domain-containing protein	NA	NA	NA	NA	NA
AYK63351.1|3721525_3721837_-	hypothetical protein	NA	NA	NA	NA	NA
AYK63352.1|3721992_3722205_-	hypothetical protein	NA	O64089	Bacillus_phage	77.5	6.0e-22
AYK63353.1|3722208_3722460_-	hypothetical protein	NA	A0A1P8CWV6	Bacillus_phage	97.6	4.6e-37
AYK64036.1|3722525_3722705_+	hypothetical protein	NA	A0A1P8CWV7	Bacillus_phage	89.3	6.0e-23
AYK63354.1|3722725_3723643_-	hypothetical protein	NA	NA	NA	NA	NA
AYK63355.1|3723803_3724034_+	hypothetical protein	NA	NA	NA	NA	NA
AYK63356.1|3724043_3724436_-	UPF0715 family protein	NA	O64087	Bacillus_phage	84.5	1.0e-51
>prophage 11
CP032860	Bacillus subtilis subsp. subtilis strain SSJ-1 chromosome, complete genome	4199434	3949319	3955415	4199434		Staphylococcus_phage(66.67%)	8	NA	NA
AYK63606.1|3949319_3949913_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	35.4	2.0e-14
AYK64049.1|3949902_3950658_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.8	9.4e-09
AYK63607.1|3950938_3951463_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
AYK63608.1|3951476_3951851_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYK63609.1|3951963_3952428_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	60.0	5.5e-44
AYK63610.1|3952460_3953657_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	54.9	4.1e-115
AYK63611.1|3953671_3954319_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	45.9	8.5e-43
AYK63612.1|3954329_3955415_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	36.1	5.1e-56
