The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	143662	199173	4191876	protease,holin,transposase	Klosneuvirus(20.0%)	49	NA	NA
AYK72556.1|143662_144067_+|holin	CidA/LrgA family holin-like protein	holin	NA	NA	NA	NA
AYK72557.1|144036_144729_+	LrgB family protein	NA	NA	NA	NA	NA
AYK72558.1|144768_145800_-	general stress protein 30	NA	NA	NA	NA	NA
AYK72559.1|145892_147041_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	41.9	1.8e-48
AYK72560.1|147236_147968_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYK72561.1|147960_149502_+	gluconokinase	NA	NA	NA	NA	NA
AYK72562.1|149530_150877_+	gluconate permease	NA	NA	NA	NA	NA
AYK72563.1|150899_152306_+	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	NA	E3SJC4	Synechococcus_phage	30.6	2.3e-32
AYK72564.1|152772_153336_+	peroxiredoxin	NA	NA	NA	NA	NA
AYK72565.1|153349_154879_+	alkyl hydroperoxide reductase subunit F	NA	A0A1V0SIN1	Klosneuvirus	29.3	1.7e-33
AYK72566.1|154981_156421_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
AYK72567.1|156506_156686_-	hypothetical protein	NA	NA	NA	NA	NA
AYK72568.1|156992_157703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYK72569.1|157793_158516_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AYK72570.1|158536_159166_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
AYK72571.1|159656_161582_+	fructose-bisphosphatase class III	NA	NA	NA	NA	NA
AYK72572.1|162032_162383_-	hypothetical protein	NA	NA	NA	NA	NA
AYK72573.1|162863_163304_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	34.4	3.4e-11
AYK72574.1|163304_163484_+	hypothetical protein	NA	NA	NA	NA	NA
AYK72575.1|163723_164482_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	38.6	5.8e-43
AYK76350.1|164478_166026_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
AYK72576.1|166155_166596_-	hypothetical protein	NA	NA	NA	NA	NA
AYK72577.1|167003_168467_+	hypothetical protein	NA	A0A0S2MYH0	Enterococcus_phage	36.0	1.0e-11
AYK72578.1|168701_170585_-	ATP-dependent helicase	NA	S5MMD7	Bacillus_phage	21.8	6.6e-19
AYK72579.1|170565_172599_-	DUF2813 domain-containing protein	NA	NA	NA	NA	NA
AYK72580.1|173115_174266_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	98.9	9.8e-151
AYK76351.1|174964_175228_-	hypothetical protein	NA	NA	NA	NA	NA
AYK72581.1|175611_176526_-|transposase	IS3 family transposase	transposase	A0A1B3AZE5	Gordonia_phage	22.9	9.0e-06
AYK72582.1|176522_176840_-|transposase	transposase	transposase	NA	NA	NA	NA
AYK72583.1|177104_180227_-	DEAD/DEAH box helicase	NA	A7WKM3	Acidianus_filamentous_virus	26.4	6.6e-08
AYK72584.1|180183_181092_-	hypothetical protein	NA	NA	NA	NA	NA
AYK72585.1|181379_181859_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AYK72586.1|181939_182110_-	CxxH/CxxC protein	NA	NA	NA	NA	NA
AYK72587.1|182294_182708_+	hypothetical protein	NA	NA	NA	NA	NA
AYK72588.1|182741_183968_-	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	28.9	1.5e-11
AYK72589.1|184030_184201_-	hypothetical protein	NA	NA	NA	NA	NA
AYK72590.1|184305_184554_-	DUF2651 domain-containing protein	NA	NA	NA	NA	NA
AYK72591.1|186627_187098_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYK72592.1|188305_188422_+	phosphatase RapG inhibitor	NA	NA	NA	NA	NA
AYK72593.1|188658_189549_-	arginase	NA	A0A1V0SJM8	Klosneuvirus	29.1	2.0e-26
AYK72594.1|189621_191025_-	amino-acid permease RocE	NA	NA	NA	NA	NA
AYK72595.1|191247_192453_-	ornithine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	28.5	2.0e-29
AYK72596.1|192784_193387_-	sporulation delaying protein family toxin	NA	NA	NA	NA	NA
AYK72597.1|193448_194402_-	hypothetical protein	NA	NA	NA	NA	NA
AYK72598.1|194386_194941_-	SdpA family antimicrobial peptide system protein	NA	NA	NA	NA	NA
AYK76352.1|195124_195760_-	SdpI family protein	NA	NA	NA	NA	NA
AYK76353.1|195759_196044_-	ArsR family transcriptional regulator	NA	A0A218MNF3	uncultured_virus	41.3	2.8e-06
AYK72599.1|196270_197656_+	arginine utilization regulatory protein RocR	NA	NA	NA	NA	NA
AYK72600.1|197970_199173_-|protease	serine protease	protease	W5SAB9	Pithovirus	40.4	5.9e-13
>prophage 2
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	899331	993059	4191876	head,integrase,capsid,terminase,tRNA,plate,coat,portal,transposase,tail,protease,holin	uncultured_Caudovirales_phage(27.08%)	104	909715:909733	952976:952994
AYK73190.1|899331_899808_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AYK73191.1|899788_900478_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AYK73192.1|900487_900943_+	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
AYK73193.1|900935_901976_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	43.9	8.8e-66
AYK73194.1|902059_902263_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73195.1|902201_904130_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.3	5.3e-56
AYK73196.1|904255_904768_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AYK73197.1|904764_905412_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
AYK73198.1|905433_905607_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
AYK73199.1|905613_906378_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	30.8	1.5e-22
AYK73200.1|906343_906550_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73201.1|906609_906801_-	lipoprotein	NA	NA	NA	NA	NA
AYK73202.1|906797_907532_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYK73203.1|907770_908055_+	co-chaperone GroES	NA	A0A221S3C8	uncultured_virus	51.6	2.2e-19
AYK73204.1|908101_909733_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	57.7	3.7e-159
909715:909733	attL	TATGGGCGGAATGATGTAA	NA	NA	NA	NA
AYK73205.1|909822_911022_-|integrase	site-specific integrase	integrase	S6C485	Thermus_phage	46.3	4.1e-83
AYK73206.1|911038_911545_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	69.9	2.6e-63
AYK73207.1|911948_912314_-	XRE family transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	48.7	1.4e-21
AYK73208.1|912448_912685_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYK73209.1|912697_913012_+	hypothetical protein	NA	A0A2H4JDL0	uncultured_Caudovirales_phage	45.3	2.4e-11
AYK73210.1|913008_913737_+	phage regulatory protein	NA	A0A2H4J4N4	uncultured_Caudovirales_phage	62.5	5.0e-84
AYK73211.1|913793_914363_+	XRE family transcriptional regulator	NA	A0A2H4J884	uncultured_Caudovirales_phage	58.5	4.5e-64
AYK73212.1|914359_914617_+	hypothetical protein	NA	A0A2H4J4M9	uncultured_Caudovirales_phage	42.2	2.2e-10
AYK73213.1|914613_914811_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73214.1|914913_915264_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73215.1|915263_915455_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73216.1|915451_916369_+	hypothetical protein	NA	A0A0A7RUE9	Clostridium_phage	62.5	4.7e-87
AYK73217.1|916388_917126_+	hypothetical protein	NA	A0A0A7RVR3	Clostridium_phage	44.9	2.3e-52
AYK73218.1|917125_917314_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73219.1|917322_918015_+	DnaD domain protein	NA	A0A1L2JY26	Aeribacillus_phage	41.0	2.1e-07
AYK73220.1|917935_918751_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	48.5	1.8e-61
AYK73221.1|918981_919410_+	RusA family crossover junction endodeoxyribonuclease	NA	S6B1L9	Thermus_phage	64.5	6.6e-44
AYK73222.1|919490_919697_+	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	75.4	2.1e-19
AYK73223.1|919728_920013_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73224.1|920009_920258_+	hypothetical protein	NA	A0A2H4JA61	uncultured_Caudovirales_phage	42.3	7.8e-05
AYK73225.1|920507_920873_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73226.1|920886_922089_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73227.1|922342_922528_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73228.1|922548_923010_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4J4R7	uncultured_Caudovirales_phage	46.0	4.1e-23
AYK73229.1|923292_923607_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73230.1|924008_924374_+	HNH endonuclease	NA	A0A1U7Q1S7	Geobacillus_virus	55.0	9.4e-31
AYK73231.1|924601_925117_+|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	43.4	2.8e-33
AYK73232.1|925113_926823_+|terminase	terminase large subunit	terminase	A0A0S2GLF0	Bacillus_phage	62.5	6.0e-205
AYK73233.1|926835_927027_+	DUF1056 family protein	NA	NA	NA	NA	NA
AYK73234.1|927027_928335_+|portal	phage portal protein	portal	D6R3Y6	Bacillus_phage	46.4	9.3e-105
AYK73235.1|928282_929020_+|protease	Clp protease ClpP	protease	A0A2I7SCY8	Paenibacillus_phage	57.1	2.6e-56
AYK73236.1|929059_930346_+|capsid	phage major capsid protein	capsid	A0A288WG01	Bacillus_phage	45.2	2.7e-80
AYK73237.1|930372_930825_+	collagen-like protein	NA	D6R3Z0	Bacillus_phage	57.1	1.3e-10
AYK73238.1|930842_931145_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0S2GLH6	Bacillus_phage	46.3	4.7e-12
AYK73239.1|931134_931449_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JCB1	uncultured_Caudovirales_phage	37.3	1.3e-12
AYK73240.1|931448_931847_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73241.1|931843_932236_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
AYK73242.1|932250_932865_+|tail	phage tail protein	tail	J7KKC8	Streptococcus_phage	35.1	3.7e-11
AYK73243.1|932929_933307_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73244.1|933506_937994_+|tail	phage tail tape measure protein	tail	A6M961	Geobacillus_virus	41.5	1.2e-66
AYK73245.1|937987_938827_+|tail	phage tail family protein	tail	D6R3Z9	Bacillus_phage	58.6	3.4e-92
AYK73246.1|938841_940545_+	alkaline phosphatase	NA	D6R400	Bacillus_phage	55.5	4.3e-179
AYK73247.1|940596_942153_+	hypothetical protein	NA	M4ZSB3	Bacillus_phage	82.9	1.5e-250
AYK73248.1|942189_943311_+|plate	phage baseplate upper protein	plate	M4ZRP1	Bacillus_phage	92.5	7.5e-196
AYK73249.1|943326_943626_+	hypothetical protein	NA	M4ZR44	Bacillus_phage	79.2	2.0e-39
AYK73250.1|943622_943793_+	XkdX family protein	NA	NA	NA	NA	NA
AYK73251.1|943844_944057_+	hypothetical protein	NA	A0A290GDY2	Caldibacillus_phage	59.4	1.9e-15
AYK73252.1|944071_944335_+|holin	phage holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	66.7	2.1e-24
AYK73253.1|944392_945361_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	67.4	1.0e-63
AYK73254.1|945394_945811_-	hypothetical protein	NA	A0A2H4J4V0	uncultured_Caudovirales_phage	57.2	6.7e-41
AYK73255.1|945822_947442_-	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	59.7	4.3e-75
AYK73256.1|947687_948347_-	hypothetical protein	NA	Q9AZW5	Lactococcus_phage	32.9	6.7e-11
AYK73257.1|948511_948994_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73258.1|949363_949573_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73259.1|949550_949781_+	DNA-binding protein	NA	NA	NA	NA	NA
AYK73260.1|951404_951839_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73261.1|951844_952564_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73262.1|952582_952771_-	hypothetical protein	NA	A0A2H4J4T3	uncultured_Caudovirales_phage	58.3	3.1e-14
AYK73263.1|954113_954917_+	hypothetical protein	NA	NA	NA	NA	NA
952976:952994	attR	TATGGGCGGAATGATGTAA	NA	NA	NA	NA
AYK73264.1|954917_955862_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73265.1|956177_958679_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AYK73266.1|958880_959942_+	sorbitol dehydrogenase	NA	NA	NA	NA	NA
AYK73267.1|960015_961407_+	MFS transporter	NA	NA	NA	NA	NA
AYK73268.1|961501_962464_+	carbohydrate kinase	NA	NA	NA	NA	NA
AYK73269.1|962659_963343_+	PspA/IM30 family protein	NA	NA	NA	NA	NA
AYK73270.1|963408_964434_+	TFIIB-type zinc ribbon-containing protein	NA	NA	NA	NA	NA
AYK73271.1|964433_965198_+	YgcG family protein	NA	NA	NA	NA	NA
AYK73272.1|965228_966200_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73273.1|967854_969276_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
AYK73274.1|969323_970364_-	(R,R)-butanediol dehydrogenase	NA	NA	NA	NA	NA
AYK73275.1|970800_971172_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73276.1|971237_972284_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73277.1|972397_973547_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
AYK73278.1|973607_973766_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73279.1|973955_974165_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73280.1|974247_975063_-	alpha/beta hydrolase	NA	H9NCP0	Mycobacterium_phage	30.8	2.4e-10
AYK73281.1|976147_977689_-|coat	spore coat protein A	coat	NA	NA	NA	NA
AYK73282.1|977840_979250_-	GABA permease	NA	NA	NA	NA	NA
AYK73283.1|979287_979575_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73284.1|979648_980521_+	cation transporter	NA	NA	NA	NA	NA
AYK73285.1|980671_981634_+	MoxR family ATPase	NA	NA	NA	NA	NA
AYK73286.1|981633_982830_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AYK73287.1|982851_985065_+	DUF4129 domain-containing protein	NA	NA	NA	NA	NA
AYK76381.1|985227_986769_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	30.5	5.7e-21
AYK73288.1|986877_987411_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYK73289.1|987392_988859_+	DUF4179 domain-containing protein	NA	NA	NA	NA	NA
AYK73290.1|989242_990565_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	30.0	1.3e-37
AYK73291.1|990775_991579_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73292.1|991706_993059_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
>prophage 3
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	996389	1004755	4191876		Synechococcus_phage(50.0%)	8	NA	NA
AYK73298.1|996389_997685_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.7	5.9e-19
AYK73299.1|997758_998484_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3G7P8	Synechococcus_phage	44.1	1.2e-45
AYK73300.1|998476_998731_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AYK73301.1|998727_999411_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AYK73302.1|999394_1001623_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.0	5.5e-158
AYK73303.1|1001598_1003029_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	1.2e-52
AYK73304.1|1003130_1004171_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	42.0	1.7e-64
AYK73305.1|1004167_1004755_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	41.0	2.4e-28
>prophage 4
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	1517558	1566356	4191876	coat,tRNA,transposase	Planktothrix_phage(44.44%)	56	NA	NA
AYK73768.1|1517558_1518709_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
AYK73769.1|1518886_1519066_+	YjzC family protein	NA	NA	NA	NA	NA
AYK73770.1|1519112_1519298_-	DUF2929 domain-containing protein	NA	NA	NA	NA	NA
AYK73771.1|1519546_1520281_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73772.1|1520362_1520920_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73773.1|1521010_1521964_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK73774.1|1521978_1522170_+	competence protein ComG	NA	NA	NA	NA	NA
AYK73775.1|1522199_1522439_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73776.1|1522603_1523542_+	beta-ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
AYK73777.1|1523564_1524806_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AYK73778.1|1524881_1525667_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73779.1|1525857_1526844_+	oligopeptide transport ATP-binding protein AppD	NA	G9BWD6	Planktothrix_phage	32.9	5.7e-22
AYK73780.1|1526840_1527830_+	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	9.4e-17
AYK73781.1|1527917_1529549_+	peptide-binding protein	NA	NA	NA	NA	NA
AYK73782.1|1529624_1530575_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AYK73783.1|1530591_1531503_+	ABC transporter permease	NA	NA	NA	NA	NA
AYK76396.1|1531708_1532461_+	DUF3603 family protein	NA	A0A0A0RP53	Bacillus_phage	43.9	5.4e-49
AYK76397.1|1532495_1533488_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AYK73784.1|1534231_1535869_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK73785.1|1535976_1536912_+	ABC transporter permease	NA	NA	NA	NA	NA
AYK73786.1|1536915_1537833_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AYK73787.1|1537837_1538914_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	2.1e-17
AYK73788.1|1538915_1539833_+	oligopeptide transport ATP-binding protein OppF	NA	G9BWD6	Planktothrix_phage	34.8	1.6e-23
AYK76398.1|1539940_1541158_+	MFS transporter	NA	NA	NA	NA	NA
AYK73789.1|1542080_1542476_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
AYK73790.1|1542518_1543175_-	TerC family protein	NA	A0A2R2YAT9	Pseudomonas_phage	38.0	1.1e-29
AYK73791.1|1543344_1543485_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73792.1|1543451_1544108_+	adaptor protein MecA	NA	NA	NA	NA	NA
AYK73793.1|1544102_1544225_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73794.1|1544268_1545420_+	competence protein CoiA	NA	NA	NA	NA	NA
AYK73795.1|1545466_1547479_+	oligoendopeptidase F	NA	NA	NA	NA	NA
AYK73796.1|1547516_1547684_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73797.1|1547779_1547980_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73798.1|1547998_1548898_-	DsbA family protein	NA	NA	NA	NA	NA
AYK73799.1|1548894_1549293_-	group 2 truncated hemoglobin YjbI	NA	NA	NA	NA	NA
AYK76399.1|1549547_1550093_-	lytic transglycosylase domain-containing protein	NA	A0A1P8CWQ1	Bacillus_phage	73.7	5.1e-41
AYK73800.1|1550296_1550869_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
AYK73801.1|1550993_1551362_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73802.1|1551390_1552026_+	GTP pyrophosphokinase YjbM	NA	NA	NA	NA	NA
AYK73803.1|1552044_1552845_+	NAD(+) kinase	NA	NA	NA	NA	NA
AYK76400.1|1552907_1553759_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AYK73804.1|1553771_1554506_-	bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetrical]	NA	A8E2N0	Enterococcus_phage	24.8	7.2e-06
AYK73805.1|1554741_1556586_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AYK73806.1|1556834_1557545_+	thiaminase II	NA	NA	NA	NA	NA
AYK73807.1|1557519_1558137_+	thiazole tautomerase TenI	NA	NA	NA	NA	NA
AYK73808.1|1558120_1559230_+	glycine oxidase ThiO	NA	NA	NA	NA	NA
AYK76401.1|1559229_1559430_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
AYK73809.1|1559426_1560197_+	thiazole synthase	NA	NA	NA	NA	NA
AYK73810.1|1560193_1561204_+	thiazole biosynthesis adenylyltransferase ThiF	NA	NA	NA	NA	NA
AYK73811.1|1561222_1562038_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AYK73812.1|1562173_1562950_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AYK73813.1|1563050_1563734_+|coat	spore coat protein	coat	NA	NA	NA	NA
AYK73814.1|1563826_1564276_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK73815.1|1565042_1565525_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK73816.1|1565609_1565930_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK73817.1|1565969_1566356_-|coat	spore coat protein	coat	NA	NA	NA	NA
>prophage 5
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	1607552	1697120	4191876	terminase,tRNA,coat,plate,portal,transposase,tail,protease,holin	uncultured_Caudovirales_phage(26.19%)	94	NA	NA
AYK73855.1|1607552_1608764_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	26.8	2.2e-23
AYK73856.1|1608894_1609401_-	N-acetyltransferase	NA	NA	NA	NA	NA
AYK73857.1|1610242_1610722_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AYK73858.1|1610761_1610956_-	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
AYK73859.1|1611087_1611417_-	DUF4306 domain-containing protein	NA	NA	NA	NA	NA
AYK73860.1|1611707_1611947_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73861.1|1611965_1612946_-	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
AYK73862.1|1613078_1613312_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK73863.1|1613564_1614968_+	DUF4163 domain-containing protein	NA	NA	NA	NA	NA
AYK73864.1|1615007_1615481_-	DUF2690 domain-containing protein	NA	NA	NA	NA	NA
AYK73865.1|1615604_1615772_-	putative motility protein	NA	NA	NA	NA	NA
AYK76405.1|1616807_1617206_-	DUF2809 domain-containing protein	NA	NA	NA	NA	NA
AYK73866.1|1617306_1617882_-	DUF4309 domain-containing protein	NA	NA	NA	NA	NA
AYK73867.1|1618027_1620985_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
AYK73868.1|1620977_1621523_+	DUF1641 domain-containing protein	NA	NA	NA	NA	NA
AYK73869.1|1621734_1622379_+	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
AYK73870.1|1622453_1623080_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AYK73871.1|1623110_1623389_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73872.1|1623779_1624970_+	cytochrome P450	NA	NA	NA	NA	NA
AYK73873.1|1624992_1626171_+	UDP-glucosyltransferase	NA	Q0IKX4	Leucania_separata_nucleopolyhedrovirus	28.3	5.6e-08
AYK73874.1|1626211_1626400_-	hypothetical protein	NA	A0A1P8CWV7	Bacillus_phage	77.6	3.4e-21
AYK73875.1|1626573_1627386_+	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
AYK73876.1|1629015_1629768_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
AYK73877.1|1629767_1630520_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.4	6.4e-18
AYK73878.1|1630639_1631614_-	multidrug resistance efflux transporter family protein	NA	NA	NA	NA	NA
AYK73879.1|1632630_1633053_+	DUF1641 domain-containing protein	NA	NA	NA	NA	NA
AYK73880.1|1633092_1634271_+	NADH dehydrogenase	NA	NA	NA	NA	NA
AYK73881.1|1634468_1635890_+	glucuronate isomerase	NA	NA	NA	NA	NA
AYK73882.1|1637440_1638454_+	ureidoglycolate dehydrogenase	NA	NA	NA	NA	NA
AYK73883.1|1638459_1639479_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
AYK73884.1|1639503_1640583_+	mannonate dehydratase	NA	NA	NA	NA	NA
AYK73885.1|1640579_1641416_+	SDR family NAD(P)-dependent oxidoreductase	NA	M1NMS3	Moumouvirus	30.4	2.7e-09
AYK73886.1|1641463_1642732_+	MFS transporter	NA	NA	NA	NA	NA
AYK73887.1|1642819_1643821_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AYK73888.1|1643896_1645339_+	tagaturonate reductase	NA	NA	NA	NA	NA
AYK73889.1|1645335_1646829_+	altronate dehydratase	NA	NA	NA	NA	NA
AYK73890.1|1646867_1647632_-	anion permease	NA	NA	NA	NA	NA
AYK73891.1|1647942_1649295_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK73892.1|1649437_1649902_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73893.1|1651192_1652343_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
AYK73894.1|1652755_1653892_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	47.4	4.9e-94
AYK73895.1|1653881_1654016_+	phosphatase RapA inhibitor PhrA	NA	NA	NA	NA	NA
AYK73896.1|1654413_1655367_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	73.8	1.6e-66
AYK73897.1|1655406_1655784_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	42.3	7.9e-17
AYK73898.1|1655888_1656491_+	hypothetical protein	NA	F8WQ53	Bacillus_phage	48.7	1.4e-44
AYK73899.1|1656567_1657404_+	manganese catalase family protein	NA	NA	NA	NA	NA
AYK73900.1|1657447_1658044_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	51.7	8.1e-40
AYK73901.1|1658206_1658548_-	transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	45.8	1.3e-18
AYK73902.1|1658726_1658906_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73903.1|1658892_1659729_+|portal	phage portal protein	portal	S6BFM4	Thermus_phage	27.8	6.7e-24
AYK73904.1|1659628_1660429_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	51.7	5.0e-61
AYK73905.1|1660428_1660596_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73906.1|1660680_1661031_+|portal	phage portal protein	portal	NA	NA	NA	NA
AYK73907.1|1661027_1661234_+	phage-like element PBSX protein XtrA	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	50.0	2.1e-11
AYK73908.1|1661349_1661859_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1L2JY33	Aeribacillus_phage	39.2	6.5e-22
AYK73909.1|1661974_1662772_+|terminase	PBSX phage terminase small subunit	terminase	A0A0S2MVB6	Bacillus_phage	50.2	8.0e-59
AYK73910.1|1662768_1664070_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2P1JTW5	Anoxybacillus_phage	60.0	9.1e-153
AYK73911.1|1664073_1665561_+	phage-like element PBSX protein XkdE	NA	A0A1B1P7C8	Bacillus_phage	55.7	1.7e-139
AYK73912.1|1665580_1666408_+|portal	phage portal protein	portal	A0A1B1P7E4	Bacillus_phage	59.2	1.6e-54
AYK73913.1|1666433_1667369_+	phage-like element PBSX protein XkdG	NA	A0A1B1P7E3	Bacillus_phage	63.8	1.1e-104
AYK73914.1|1667390_1667774_+	DUF3199 family protein	NA	A0A1B1P7D6	Bacillus_phage	40.5	1.4e-13
AYK73915.1|1667770_1668127_+	phage-like element PBSX protein XkdH	NA	NA	NA	NA	NA
AYK73916.1|1668123_1668609_+	phage-like element PBSX protein XkdI	NA	A0A249XXA4	Clostridium_phage	47.0	2.1e-38
AYK73917.1|1668621_1669062_+	phage-like element PBSX protein XkdJ	NA	NA	NA	NA	NA
AYK73918.1|1669065_1669284_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73919.1|1669280_1670681_+|tail	phage tail sheath protein	tail	A0A0A7S087	Clostridium_phage	39.3	3.0e-77
AYK73920.1|1670682_1671126_+	phage-like element PBSX protein XkdM	NA	A0A0K2CNG3	Brevibacillus_phage	44.5	1.9e-25
AYK73921.1|1671217_1671664_+|portal	phage portal protein	portal	A0A0A7RTY8	Clostridium_phage	36.8	1.0e-10
AYK73922.1|1671705_1671846_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73923.1|1671846_1676850_+|portal	phage portal protein	portal	A0A2H4JA91	uncultured_Caudovirales_phage	44.8	6.4e-37
AYK73924.1|1676842_1677502_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A8WJR4	Clostridium_phage	33.2	1.1e-24
AYK73925.1|1677517_1678495_+	phage-like element PBSX protein XkdQ	NA	H7BV96	unidentified_phage	32.6	1.0e-39
AYK73926.1|1678494_1678761_+	phage-like element PBSX protein XkdR	NA	S6C459	Thermus_phage	36.4	1.7e-05
AYK73927.1|1678818_1679244_+	DUF2634 domain-containing protein	NA	A0A2H4J6K5	uncultured_Caudovirales_phage	38.0	3.0e-12
AYK73928.1|1679236_1680283_+|plate	baseplate J/gp47 family protein	plate	S6AVU3	Thermus_phage	44.3	1.3e-72
AYK73929.1|1680266_1680845_+	phage-like element PBSX protein XkdU	NA	A0A2H4J717	uncultured_Caudovirales_phage	34.2	3.9e-15
AYK73930.1|1680841_1681114_+	hypothetical protein	NA	NA	NA	NA	NA
AYK73931.1|1681116_1683180_+|terminase	terminase	terminase	A0A2H4J4R1	uncultured_Caudovirales_phage	34.5	2.6e-29
AYK73932.1|1683191_1683521_+|portal	phage portal protein	portal	A0A2H4JCI0	uncultured_Caudovirales_phage	40.7	1.3e-15
AYK73933.1|1683517_1683682_+	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	67.9	1.9e-15
AYK73934.1|1683728_1684568_+|portal	phage portal protein	portal	NA	NA	NA	NA
AYK73935.1|1684620_1684890_+	protein xhlA	NA	A0A2H4JD40	uncultured_Caudovirales_phage	64.8	1.4e-23
AYK73936.1|1684902_1685166_+|holin	holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	64.4	6.1e-24
AYK73937.1|1685178_1686072_+	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXD7	Bacillus_phage	69.2	5.2e-83
AYK73938.1|1686109_1686247_-	hypothetical protein	NA	NA	NA	NA	NA
AYK73939.1|1686332_1686503_-	type II toxin-antitoxin system SpoIISB family antitoxin	NA	NA	NA	NA	NA
AYK73940.1|1686502_1687249_-	type II toxin-antitoxin system SpoIISA family toxin	NA	NA	NA	NA	NA
AYK73941.1|1687358_1688360_-	low-affinity inorganic phosphate transporter	NA	NA	NA	NA	NA
AYK73942.1|1688372_1688990_-	DUF47 domain-containing protein	NA	NA	NA	NA	NA
AYK73943.1|1689265_1690582_-	amino acid permease	NA	NA	NA	NA	NA
AYK73944.1|1690970_1691921_+	ring-cleaving dioxygenase	NA	NA	NA	NA	NA
AYK76406.1|1692137_1694288_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
AYK73945.1|1694299_1695271_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	41.3	2.5e-62
AYK73946.1|1695770_1697120_-|protease	serine protease HtrA	protease	A0A1B1IT49	uncultured_Mediterranean_phage	34.1	3.4e-25
>prophage 6
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	2114018	2164470	4191876	terminase,tRNA,coat,transposase,protease	Bacillus_phage(50.0%)	55	NA	NA
AYK74345.1|2114018_2115371_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK74346.1|2115616_2117146_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AYK74347.1|2117147_2117579_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74348.1|2117840_2118386_+|coat	spore coat protein E	coat	NA	NA	NA	NA
AYK74349.1|2118518_2121095_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	27.7	2.4e-40
AYK74350.1|2121110_2122994_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.3	7.6e-68
AYK74351.1|2124103_2124352_+	hypothetical protein	NA	A0A2H4JA61	uncultured_Caudovirales_phage	44.9	4.6e-05
AYK74352.1|2124402_2124765_-	hypothetical protein	NA	NA	NA	NA	NA
AYK74353.1|2125016_2125787_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74354.1|2125794_2126007_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74355.1|2127930_2128248_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74356.1|2128423_2128669_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74357.1|2128658_2129273_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74358.1|2129285_2129510_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74359.1|2129506_2129881_+	HNH endonuclease	NA	Q38456	Bacillus_phage	87.1	1.3e-64
AYK74360.1|2130260_2130794_+|terminase	phage terminase small subunit P27 family	terminase	Q9ZXG2	Bacillus_phage	82.5	1.0e-70
AYK74361.1|2131044_2132292_-|transposase	IS256-like element ISBsu2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	22.6	2.6e-24
AYK74362.1|2133338_2133794_-	hypothetical protein	NA	NA	NA	NA	NA
AYK74363.1|2133948_2134506_-	hypothetical protein	NA	NA	NA	NA	NA
AYK74364.1|2134626_2135241_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AYK74365.1|2135379_2135736_-	hypothetical protein	NA	NA	NA	NA	NA
AYK74366.1|2135814_2136639_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AYK74367.1|2136749_2138078_-|protease	serine protease	protease	A0A1B0T6A2	Bacillus_phage	33.6	9.3e-28
AYK74368.1|2138302_2138536_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74369.1|2138815_2139523_+	hypothetical protein	NA	F8WQ53	Bacillus_phage	56.9	3.2e-51
AYK74370.1|2139592_2140045_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AYK74371.1|2140058_2140412_-	multidrug resistance protein EbrB	NA	NA	NA	NA	NA
AYK74372.1|2140425_2140743_-	multidrug efflux SMR transporter subunit EbrA	NA	NA	NA	NA	NA
AYK74373.1|2140879_2141155_-	hypothetical protein	NA	NA	NA	NA	NA
AYK74374.1|2141243_2141657_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74375.1|2141756_2142701_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AYK74376.1|2142740_2142962_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AYK74377.1|2143157_2143430_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74378.1|2143511_2143742_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74379.1|2143983_2144376_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	G3MBF1	Bacillus_virus	58.3	2.5e-29
AYK74380.1|2144335_2146438_+	ribonucleotide-diphosphate reductase subunit alpha	NA	U5PY35	Bacillus_phage	86.8	0.0e+00
AYK74381.1|2146455_2147445_+	ribonucleoside-diphosphate reductase subunit beta	NA	F8WQ21	Bacillus_phage	83.5	1.9e-155
AYK74382.1|2147494_2148115_+	hypothetical protein	NA	A0A127AYS1	Bacillus_phage	48.4	1.6e-46
AYK74383.1|2148178_2148946_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	49.5	1.2e-51
AYK74384.1|2149586_2150555_+	stage V sporulation protein K	NA	G3MAX6	Bacillus_virus	40.5	5.2e-52
AYK74385.1|2150687_2151950_+	GTPase HflX	NA	NA	NA	NA	NA
AYK74386.1|2151967_2153233_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AYK74387.1|2153342_2153750_+	transcriptional repressor GlnR	NA	NA	NA	NA	NA
AYK74388.1|2153808_2155143_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AYK74389.1|2155252_2155378_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74390.1|2155416_2155716_-	hypothetical protein	NA	NA	NA	NA	NA
AYK74391.1|2155769_2156078_-	hypothetical protein	NA	NA	NA	NA	NA
AYK74392.1|2156098_2157982_-	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	61.3	5.2e-125
AYK74393.1|2158230_2158410_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74394.1|2159073_2159364_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74395.1|2159602_2160094_+	hypothetical protein	NA	NA	NA	NA	NA
AYK74396.1|2160274_2161126_+	toxin	NA	O64021	Bacillus_phage	60.3	1.4e-85
AYK74397.1|2161424_2161676_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76423.1|2161859_2162294_+	SMI1/KNR4 family protein	NA	NA	NA	NA	NA
AYK74398.1|2163222_2164470_+|transposase	IS256-like element ISBsu2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	22.6	2.6e-24
>prophage 7
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	2348180	2355413	4191876	holin	Bacillus_phage(85.71%)	9	NA	NA
AYK74563.1|2348180_2348540_-	hypothetical protein	NA	A0A1P8CWJ9	Bacillus_phage	98.3	2.2e-61
AYK74564.1|2348799_2348883_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AYK74565.1|2349171_2349705_-	N-acetyltransferase	NA	O64026	Bacillus_phage	98.9	4.0e-99
AYK74566.1|2349740_2350319_-	SMI1/KNR4 family protein	NA	O64025	Bacillus_phage	93.2	1.4e-100
AYK74567.1|2350374_2350833_-	SMI1/KNR4 family protein	NA	A0A1P8CWJ1	Bacillus_phage	84.9	1.1e-71
AYK74568.1|2350922_2351381_-	antitoxin YobK	NA	NA	NA	NA	NA
AYK74569.1|2351390_2353193_-	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	87.6	4.9e-221
AYK76431.1|2353291_2353849_-	SMI1/KNR4 family protein	NA	O64022	Bacillus_phage	95.7	7.0e-102
AYK74570.1|2353976_2355413_+	flavin monoamine oxidase family protein	NA	A0A2K9L022	Tupanvirus	30.6	2.6e-07
>prophage 8
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	2572523	2578618	4191876		Staphylococcus_phage(66.67%)	8	NA	NA
AYK74808.1|2572523_2573117_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	35.4	2.6e-14
AYK76441.1|2573106_2573862_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	29.2	5.5e-09
AYK74809.1|2574141_2574666_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
AYK74810.1|2574679_2575054_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYK74811.1|2575166_2575631_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	60.0	5.5e-44
AYK74812.1|2575663_2576860_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	54.9	4.1e-115
AYK74813.1|2576874_2577522_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	45.9	8.5e-43
AYK74814.1|2577532_2578618_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	36.1	5.1e-56
>prophage 9
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	2837078	2880142	4191876	coat,transposase,holin	uncultured_Caudovirales_phage(25.0%)	47	NA	NA
AYK76457.1|2837078_2838626_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
AYK75087.1|2838622_2839381_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	38.6	5.8e-43
AYK75088.1|2839973_2840060_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AYK75089.1|2842170_2842650_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75090.1|2843266_2843533_+	transcriptional regulator	NA	NA	NA	NA	NA
AYK76458.1|2843671_2843824_-	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	76.0	8.4e-18
AYK75091.1|2845311_2846133_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AYK75092.1|2846249_2847452_+	MFS transporter	NA	NA	NA	NA	NA
AYK75093.1|2847620_2848079_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYK75094.1|2848111_2849359_-|transposase	IS256-like element ISBsu2 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	22.6	2.6e-24
AYK75095.1|2849604_2850909_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
AYK75096.1|2851198_2851342_-	YrzO family protein	NA	NA	NA	NA	NA
AYK75097.1|2851359_2852325_-	DMT family transporter	NA	NA	NA	NA	NA
AYK75098.1|2852450_2853317_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYK75099.1|2853436_2854474_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4J2Q2	uncultured_Caudovirales_phage	26.2	4.1e-15
AYK75100.1|2854561_2855497_-	cation transporter	NA	NA	NA	NA	NA
AYK75101.1|2855686_2856811_-|transposase	IS4 family transposase IS4Bsu1	transposase	NA	NA	NA	NA
AYK75102.1|2857589_2858912_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
AYK75103.1|2859076_2859409_-	branched-chain amino acid transporter AzlD	NA	NA	NA	NA	NA
AYK75104.1|2859405_2860170_-	azaleucine resistance protein AzlC	NA	NA	NA	NA	NA
AYK75105.1|2860182_2860656_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AYK75106.1|2860989_2861265_-	barnase inhibitor	NA	NA	NA	NA	NA
AYK75107.1|2861936_2862500_-	cysteine hydrolase	NA	NA	NA	NA	NA
AYK76459.1|2862727_2863099_-	DUF2568 domain-containing protein	NA	NA	NA	NA	NA
AYK75108.1|2863910_2864414_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75109.1|2864633_2865485_-	aminoglycoside 6-adenylyltransferase AadK	NA	E4ZFP8	Streptococcus_phage	58.2	9.0e-93
AYK75110.1|2865880_2866924_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AYK75111.1|2867135_2867330_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75112.1|2867271_2868069_+	glutamate racemase	NA	NA	NA	NA	NA
AYK75113.1|2868449_2869157_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76460.1|2869731_2869809_+	YjcZ family sporulation protein	NA	NA	NA	NA	NA
AYK75114.1|2870095_2870257_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75115.1|2870320_2871079_-	metal-binding protein ZinT	NA	NA	NA	NA	NA
AYK75116.1|2871212_2871743_-	RNA polymerase sigma factor SigZ	NA	A0A1V0DZZ1	Clostridioides_phage	24.8	2.1e-07
AYK75117.1|2871878_2872859_+	aldo/keto reductase	NA	NA	NA	NA	NA
AYK75118.1|2873017_2873833_-	chitosanase	NA	A0A223LHY0	Streptomyces_phage	33.2	3.7e-19
AYK75119.1|2874269_2874533_+	hypothetical protein	NA	NA	NA	NA	NA
AYK75120.1|2874669_2875485_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYK75121.1|2875891_2876248_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AYK75122.1|2876300_2876660_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
AYK75123.1|2876931_2877033_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75124.1|2877175_2877562_-	VOC family protein	NA	NA	NA	NA	NA
AYK75125.1|2877824_2878070_+|coat	spore coat protein F-like protein YraG	coat	NA	NA	NA	NA
AYK75126.1|2878087_2878456_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
AYK75127.1|2878474_2879611_+	glutathione-dependent formaldehyde dehydrogenase	NA	E3SJ82	Synechococcus_phage	25.1	2.2e-14
AYK75128.1|2879629_2879827_+	hypothetical protein	NA	NA	NA	NA	NA
AYK75129.1|2879842_2880142_+|coat	spore coat protein	coat	NA	NA	NA	NA
>prophage 10
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	2971428	3038991	4191876	integrase,tRNA,coat,transposase,protease	Staphylococcus_phage(20.0%)	56	3027842:3027901	3039254:3039316
AYK75215.1|2971428_2972592_-|coat	spore coat assembly protein SafA	coat	NA	NA	NA	NA
AYK75216.1|2972708_2973815_-	quinolinate synthase NadA	NA	NA	NA	NA	NA
AYK75217.1|2973801_2974671_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA	NA
AYK75218.1|2974624_2976220_-	L-aspartate oxidase	NA	NA	NA	NA	NA
AYK75219.1|2976322_2977510_+	aminotransferase class V-fold PLP-dependent enzyme	NA	A0A141ZJV0	Faustovirus	27.4	1.7e-33
AYK75220.1|2977469_2978012_+	transcription repressor NadR	NA	NA	NA	NA	NA
AYK75221.1|2978036_2978894_-	prephenate dehydratase	NA	NA	NA	NA	NA
AYK75222.1|2978910_2979354_-	ACT domain-containing protein	NA	NA	NA	NA	NA
AYK75223.1|2979414_2980701_-	GTPase ObgE	NA	NA	NA	NA	NA
AYK75224.1|2980734_2981313_-	sporulation initiation phosphotransferase B	NA	NA	NA	NA	NA
AYK75225.1|2981390_2981513_+	hypothetical protein	NA	NA	NA	NA	NA
AYK75226.1|2981633_2981918_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AYK75227.1|2981930_2982269_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
AYK75228.1|2982271_2982580_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AYK75229.1|2982726_2983593_-	stage IV sporulation protein FB	NA	NA	NA	NA	NA
AYK75230.1|2983585_2984380_-	stage IV sporulation protein FA	NA	NA	NA	NA	NA
AYK75231.1|2984529_2985336_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AYK75232.1|2985337_2986018_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AYK75233.1|2986070_2986589_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AYK75234.1|2986585_2987458_-	cell shape-determining protein MreC	NA	NA	NA	NA	NA
AYK75235.1|2987488_2988502_-	rod shape-determining protein	NA	NA	NA	NA	NA
AYK75236.1|2988593_2989289_-	JAB domain-containing protein	NA	NA	NA	NA	NA
AYK75237.1|2989325_2989895_-	septum formation protein Maf	NA	NA	NA	NA	NA
AYK75238.1|2990047_2991046_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AYK75239.1|2991179_2991926_-	prepilin peptidase	NA	NA	NA	NA	NA
AYK75240.1|2992065_2993358_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AYK75241.1|2993417_2996060_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.6	3.7e-161
AYK75242.1|2996507_2996699_+	hypothetical protein	NA	NA	NA	NA	NA
AYK75243.1|2996717_2997743_-|coat	spore coat protein YsxE	coat	NA	NA	NA	NA
AYK75244.1|2997775_2999497_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AYK75245.1|2999627_3000920_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AYK75246.1|3000949_3001924_-	porphobilinogen synthase	NA	NA	NA	NA	NA
AYK75247.1|3001920_3002709_-	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
AYK75248.1|3002698_3003643_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
AYK75249.1|3003675_3004506_-	protein HemX	NA	NA	NA	NA	NA
AYK75250.1|3004513_3005881_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AYK75251.1|3006110_3006608_+	hypothetical protein	NA	NA	NA	NA	NA
AYK75252.1|3007212_3009537_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	43.7	2.6e-182
AYK75253.1|3011528_3012791_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	64.9	1.3e-148
AYK75254.1|3013062_3014337_-	trigger factor	NA	NA	NA	NA	NA
AYK75255.1|3014564_3015569_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AYK75256.1|3015688_3016288_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AYK75257.1|3016300_3017719_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AYK75258.1|3018885_3020442_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	38.5	1.3e-09
AYK75259.1|3020428_3021457_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AYK75260.1|3021480_3021999_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AYK75261.1|3021995_3023720_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.2	2.4e-60
AYK75262.1|3024532_3024868_+	hypothetical protein	NA	NA	NA	NA	NA
AYK75263.1|3025666_3026491_+	YsnF/AvaK domain-containing protein	NA	NA	NA	NA	NA
AYK75264.1|3026625_3027775_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
3027842:3027901	attL	TACGTCCCAGGAGAGATTCGAACTCCCGACCGACGGCTTAGAAGGCCGTTGCTCTATCCA	NA	NA	NA	NA
AYK75265.1|3029226_3030546_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.9	1.3e-16
AYK75266.1|3030542_3031973_-	SAM-dependent methyltransferase	NA	A0A220A2U4	Liberibacter_phage	25.9	5.9e-28
AYK75267.1|3032105_3035312_-	type I restriction-modification system endonuclease	NA	Q5YA94	Bacillus_phage	29.5	1.7e-06
AYK75268.1|3035523_3036681_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75269.1|3037469_3037766_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76466.1|3038103_3038991_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
3039254:3039316	attR	TACGTCCCAGGAGAGATTCGAACTCCCGACCGACGGCTTAGAAGGCCGTTGCTCTATCCAGCT	NA	NA	NA	NA
>prophage 11
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	3450107	3546817	4191876	head,integrase,capsid,terminase,plate,coat,portal,transposase,tail,protease,holin	Bacillus_phage(34.78%)	116	3490799:3490820	3528079:3528100
AYK75624.1|3450107_3451127_-|coat	spore coat protein YutH	coat	NA	NA	NA	NA
AYK75625.1|3451279_3451780_+	phosphatidylglycerophosphatase A	NA	G3MBC5	Bacillus_virus	56.0	1.2e-41
AYK75626.1|3451806_3452577_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
AYK75627.1|3452605_3453040_-	DUF86 domain-containing protein	NA	NA	NA	NA	NA
AYK75628.1|3453063_3453339_-	DUF1027 domain-containing protein	NA	NA	NA	NA	NA
AYK75629.1|3453452_3454085_+	hypothetical protein	NA	NA	NA	NA	NA
AYK75630.1|3454100_3454997_-	lipoyl synthase	NA	NA	NA	NA	NA
AYK75631.1|3455231_3456212_+	M23 family metallopeptidase	NA	A0A075BS18	Microcystis_phage	37.3	3.0e-07
AYK75632.1|3456239_3457007_-	sporulation protein YunB	NA	NA	NA	NA	NA
AYK75633.1|3457079_3457385_-	DUF1805 domain-containing protein	NA	NA	NA	NA	NA
AYK75634.1|3457449_3458838_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AYK75635.1|3458857_3459679_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AYK76486.1|3459696_3460545_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
AYK75636.1|3460582_3460930_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75637.1|3461026_3462367_-	allantoinase	NA	NA	NA	NA	NA
AYK75638.1|3462541_3464137_+	PucR family transcriptional regulator	NA	NA	NA	NA	NA
AYK75639.1|3464281_3465631_+	purine permease	NA	Q9KX94	Enterobacteria_phage	28.1	1.2e-25
AYK75640.1|3465636_3466917_+	purine permease	NA	Q9KX94	Enterobacteria_phage	30.0	7.6e-27
AYK75641.1|3466937_3468422_+	urate oxidase	NA	NA	NA	NA	NA
AYK75642.1|3468421_3468766_+	hydroxyisourate hydrolase	NA	NA	NA	NA	NA
AYK75643.1|3468949_3469153_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75644.1|3469187_3469319_+	YhzE/YjcZ family sporulation protein YuzJ	NA	NA	NA	NA	NA
AYK75645.1|3469524_3470046_-	xanthine dehydrogenase subunit E	NA	NA	NA	NA	NA
AYK75646.1|3470036_3472274_-	xanthine dehydrogenase subunit D	NA	NA	NA	NA	NA
AYK75647.1|3472274_3473108_-	xanthine dehydrogenase subunit C	NA	NA	NA	NA	NA
AYK75648.1|3473104_3473722_-	xanthine dehydrogenase accessory protein PucB	NA	NA	NA	NA	NA
AYK75649.1|3473718_3474711_-	XdhC family protein	NA	NA	NA	NA	NA
AYK75650.1|3474937_3476188_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
AYK75651.1|3476204_3477443_-	allantoate amidohydrolase	NA	NA	NA	NA	NA
AYK75652.1|3477888_3478755_+	ribonuclease	NA	NA	NA	NA	NA
AYK75653.1|3478933_3480037_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	29.7	5.0e-19
AYK75654.1|3480218_3480947_+	transcriptional regulator PhoB	NA	NA	NA	NA	NA
AYK75655.1|3480971_3481826_-	fructoselysine 6-kinase	NA	NA	NA	NA	NA
AYK75656.1|3482738_3483617_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AYK75657.1|3483674_3484943_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK75658.1|3485023_3486010_-	SIS domain-containing protein	NA	A0A2L2DN46	Acanthamoeba_polyphaga_mimivirus	23.6	1.9e-09
AYK75659.1|3486224_3486599_-	nucleotide excision repair endonuclease	NA	NA	NA	NA	NA
AYK75660.1|3486701_3487820_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AYK75661.1|3487978_3488125_+	acid-soluble spore protein SspG	NA	NA	NA	NA	NA
AYK75662.1|3488124_3488400_+	hypothetical protein	NA	NA	NA	NA	NA
AYK75663.1|3488457_3489608_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
AYK75664.1|3489753_3490137_-	VOC family protein	NA	NA	NA	NA	NA
AYK75665.1|3490246_3490525_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
3490799:3490820	attL	CCTATAGAACCTTCCATTTCGA	NA	NA	NA	NA
AYK76487.1|3491263_3491452_+	hypothetical protein	NA	A0A2H4J4T3	uncultured_Caudovirales_phage	50.0	3.2e-11
AYK75666.1|3491611_3493384_+	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	54.7	1.6e-120
AYK75667.1|3493396_3493858_+	SMI1/KNR4 family protein	NA	NA	NA	NA	NA
AYK75668.1|3493908_3494850_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXD7	Bacillus_phage	77.1	3.0e-97
AYK75669.1|3494891_3495314_-|holin	holin family protein	holin	D6R405	Bacillus_phage	85.7	3.0e-57
AYK75670.1|3495367_3495538_-	XkdX family protein	NA	NA	NA	NA	NA
AYK75671.1|3495534_3495834_-	hypothetical protein	NA	M4ZR44	Bacillus_phage	79.2	1.5e-39
AYK75672.1|3495849_3497073_-|plate	phage baseplate upper protein	plate	M4ZRP1	Bacillus_phage	80.3	9.1e-179
AYK75673.1|3498697_3500572_-	autolysin	NA	D6R400	Bacillus_phage	27.8	5.5e-50
AYK75674.1|3500585_3501419_-|tail	phage tail family protein	tail	M4ZS20	Bacillus_phage	34.1	3.5e-33
AYK75675.1|3501431_3505172_-	hypothetical protein	NA	A0A0S2SXL7	Bacillus_phage	60.4	9.1e-105
AYK75676.1|3505234_3505417_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75677.1|3505428_3505791_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75678.1|3505850_3506435_-|tail	major tail protein	tail	U5U3Z7	Lactobacillus_phage	36.5	9.1e-28
AYK75679.1|3506440_3506848_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75680.1|3506844_3507237_-|tail	phage tail protein	tail	A0A0M5M1E5	Enterococcus_phage	37.9	3.0e-11
AYK75681.1|3507236_3507563_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AYK75682.1|3507552_3507846_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JB77	uncultured_Caudovirales_phage	33.0	2.6e-07
AYK75683.1|3507900_3508284_-	collagen-like protein	NA	D6R3Z0	Bacillus_phage	56.8	1.4e-05
AYK75684.1|3508311_3509514_-|capsid	phage major capsid protein	capsid	A0A2H4J824	uncultured_Caudovirales_phage	49.8	8.3e-76
AYK75685.1|3509562_3510159_-|head,protease	HK97 family phage prohead protease	head,protease	A0A1J0MFL1	Staphylococcus_phage	53.3	3.6e-48
AYK75686.1|3510151_3511378_-|portal	phage portal protein	portal	A0A2H4J331	uncultured_Caudovirales_phage	38.8	5.3e-70
AYK75687.1|3511382_3511589_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75688.1|3511605_3513312_-|terminase	terminase large subunit	terminase	A0A2H4JC16	uncultured_Caudovirales_phage	42.8	1.9e-121
AYK75689.1|3513304_3513799_-|terminase	phage terminase small subunit P27 family	terminase	A0A1Q1PVW3	Staphylococcus_phage	36.1	9.1e-21
AYK75690.1|3514032_3514245_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75691.1|3514247_3514631_-	HNH endonuclease	NA	A0A075M5R4	Enterococcus_phage	44.2	1.1e-18
AYK75692.1|3514733_3515348_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75693.1|3515484_3516045_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75694.1|3516302_3516845_-|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	63.9	5.8e-61
AYK76488.1|3516841_3517294_-	ArpU family transcriptional regulator	NA	S6AVV9	Thermus_phage	55.9	1.7e-37
AYK75695.1|3517903_3518290_-	hypothetical protein	NA	A0A1P8CWX0	Bacillus_phage	36.2	3.8e-14
AYK75696.1|3518286_3518766_-	hypothetical protein	NA	F8WQ59	Bacillus_phage	53.8	1.0e-21
AYK75697.1|3518765_3519458_-	dUTPase	NA	R9TQ23	Paenibacillus_phage	43.7	6.7e-38
AYK75698.1|3519620_3519869_-	hypothetical protein	NA	A0A2H4JA61	uncultured_Caudovirales_phage	44.9	6.0e-05
AYK75699.1|3519865_3520273_-	hypothetical protein	NA	W8CYU3	Bacillus_phage	45.0	2.9e-25
AYK75700.1|3520269_3520554_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75701.1|3520597_3520795_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75702.1|3521042_3521183_-	BH0509 family protein	NA	NA	NA	NA	NA
AYK75703.1|3521290_3521839_-	hypothetical protein	NA	A0A0K2CYJ0	Paenibacillus_phage	39.3	4.6e-05
AYK75704.1|3522138_3522993_-	AAA family ATPase	NA	Q4ZAS1	Staphylococcus_virus	29.4	2.2e-22
AYK75705.1|3522943_3523783_-	DNA replication protein DnaD	NA	A0A0U3TZZ4	Bacillus_phage	51.4	1.4e-66
AYK75706.1|3523775_3524006_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75707.1|3524029_3524242_-	hypothetical protein	NA	R9TQ08	Paenibacillus_phage	70.7	5.3e-18
AYK75708.1|3524299_3524584_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYK75709.1|3524687_3525083_+	XRE family transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	39.1	6.6e-06
AYK75710.1|3525314_3525509_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75711.1|3525505_3526630_-	XRE family transcriptional regulator	NA	A0A1B1P786	Bacillus_phage	24.0	2.8e-09
AYK75712.1|3526962_3528000_+|integrase	site-specific integrase	integrase	A0A223LI82	Staphylococcus_phage	47.1	1.8e-87
AYK75713.1|3528074_3529472_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
3528079:3528100	attR	CCTATAGAACCTTCCATTTCGA	NA	NA	NA	NA
AYK75714.1|3529492_3529936_-	iron-sulfur cluster assembly scaffold protein NifU	NA	A0A2P1CJL8	Mycobacterium_phage	38.7	1.9e-14
AYK75715.1|3529925_3531146_-	cysteine desulfurase SufS	NA	Q2XUY6	environmental_halophage	47.8	3.4e-117
AYK75716.1|3531145_3532459_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
AYK75717.1|3532476_3533262_-	Fe-S cluster assembly ATPase SufC	NA	W8CYL7	Bacillus_phage	23.6	6.5e-05
AYK75718.1|3533295_3533493_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75719.1|3533455_3533593_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75720.1|3533786_3534164_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AYK75721.1|3534248_3535073_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYK75722.1|3535086_3535755_-	methionine import system permease MetP	NA	NA	NA	NA	NA
AYK75723.1|3535747_3536773_-	methionine import ATP-binding protein MetN	NA	G3M9Y6	Bacillus_virus	36.5	1.4e-31
AYK75724.1|3537099_3537444_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75725.1|3537550_3537871_-	thiol reductase thioredoxin	NA	NA	NA	NA	NA
AYK75726.1|3537872_3538313_-	toprim domain-containing protein	NA	NA	NA	NA	NA
AYK75727.1|3538312_3538549_-	DUF2553 family protein	NA	NA	NA	NA	NA
AYK75728.1|3538604_3538988_-	glycine cleavage system protein H	NA	NA	NA	NA	NA
AYK75729.1|3539054_3539411_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	54.6	1.8e-23
AYK75730.1|3539521_3541306_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYK75731.1|3541323_3542499_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
AYK76489.1|3542509_3544879_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYK75732.1|3545053_3545200_+	YuzL family protein	NA	NA	NA	NA	NA
AYK75733.1|3545224_3546133_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	42.2	3.9e-62
AYK75734.1|3546226_3546472_+	hypothetical protein	NA	NA	NA	NA	NA
AYK75735.1|3546484_3546817_+|coat	spore coat protein	coat	NA	NA	NA	NA
>prophage 12
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	3628579	3689853	4191876	head,integrase,capsid,terminase,plate,portal,transposase,tail,protease,holin	Bacillus_phage(66.67%)	72	3628474:3628533	3689900:3691460
3628474:3628533	attL	TTCAGCTTGTAGAGAAAACGACGTTTTTTCTACAAGCTTTTTTGTTTTATACAGTTTCTT	NA	NA	NA	NA
AYK75808.1|3628579_3629932_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK75809.1|3630056_3632468_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	37.8	1.3e-120
AYK75810.1|3632551_3632761_-	copper resistance protein CopZ	NA	NA	NA	NA	NA
AYK75811.1|3632836_3633142_-	transcriptional regulator	NA	NA	NA	NA	NA
AYK75812.1|3633269_3634346_+	oxidoreductase	NA	NA	NA	NA	NA
AYK75813.1|3635177_3637073_-	FUSC family protein	NA	NA	NA	NA	NA
AYK75814.1|3637235_3637637_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75815.1|3637633_3637993_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AYK75816.1|3637989_3638562_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AYK75817.1|3638672_3639467_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYK76494.1|3639976_3640165_+	hypothetical protein	NA	A0A2H4J4T3	uncultured_Caudovirales_phage	53.3	1.4e-11
AYK75818.1|3640326_3641910_+	hypothetical protein	NA	A0A1P8CWI7	Bacillus_phage	59.7	4.2e-75
AYK75819.1|3641924_3642314_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76495.1|3642656_3643259_+	hypothetical protein	NA	NA	NA	NA	NA
AYK75820.1|3643298_3644240_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXD7	Bacillus_phage	77.1	3.0e-97
AYK75821.1|3644281_3644704_-|holin	holin family protein	holin	D6R405	Bacillus_phage	85.7	3.0e-57
AYK75822.1|3644757_3644928_-	XkdX family protein	NA	NA	NA	NA	NA
AYK75823.1|3644924_3645224_-	hypothetical protein	NA	M4ZR44	Bacillus_phage	79.2	1.5e-39
AYK75824.1|3645239_3646463_-|plate	phage baseplate upper protein	plate	M4ZRP1	Bacillus_phage	80.3	9.1e-179
AYK75825.1|3646499_3648074_-	hypothetical protein	NA	M4ZSB3	Bacillus_phage	88.5	5.3e-264
AYK75826.1|3648110_3649817_-	alkaline phosphatase	NA	D6R400	Bacillus_phage	81.8	9.4e-267
AYK75827.1|3649828_3650668_-|tail	phage tail family protein	tail	D6R3Z9	Bacillus_phage	83.2	8.5e-136
AYK75828.1|3650667_3654546_-|tail	phage tail tape measure protein	tail	D6R3Z8	Bacillus_phage	81.0	0.0e+00
AYK75829.1|3654558_3654738_-	hypothetical protein	NA	D6R3Z7	Bacillus_phage	68.5	1.6e-12
AYK75830.1|3654740_3655079_-	hypothetical protein	NA	Q9ZXE8	Bacillus_phage	70.5	3.0e-39
AYK75831.1|3655133_3655745_-|tail	phage tail protein	tail	Q9ZXE9	Bacillus_phage	89.7	7.9e-99
AYK75832.1|3655745_3656126_-	DUF3168 domain-containing protein	NA	Q9ZXF0	Bacillus_phage	66.1	2.6e-39
AYK75833.1|3656122_3656506_-	HK97 gp10 family phage protein	NA	Q9ZXF1	Bacillus_phage	86.6	2.9e-59
AYK75834.1|3656498_3656870_-|head,tail	head-tail adaptor protein	head,tail	Q9ZXF2	Bacillus_phage	68.3	3.5e-41
AYK75835.1|3656802_3657150_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q9ZXF3	Bacillus_phage	87.0	2.0e-51
AYK75836.1|3657165_3657657_-	collagen-like protein	NA	D6R3Z0	Bacillus_phage	69.1	1.3e-27
AYK75837.1|3657685_3658000_-	hypothetical protein	NA	Q9ZXF5	Bacillus_phage	68.8	6.8e-30
AYK75838.1|3658015_3659218_-|capsid	phage major capsid protein	capsid	Q9ZXF6	Bacillus_phage	71.5	3.3e-157
AYK75839.1|3659254_3659881_-|head,protease	HK97 family phage prohead protease	head,protease	Q9ZXF7	Bacillus_phage	92.8	1.8e-106
AYK75840.1|3659870_3661118_-|portal	phage portal protein	portal	D6R3Y6	Bacillus_phage	86.5	1.3e-217
AYK75841.1|3661123_3661339_-	hypothetical protein	NA	Q9ZXF9	Bacillus_phage	80.6	1.3e-24
AYK75842.1|3661351_3663061_-|terminase	terminase large subunit	terminase	D6R3Y4	Bacillus_phage	92.1	0.0e+00
AYK75843.1|3663008_3663593_-|terminase	phage terminase small subunit P27 family	terminase	Q9ZXG2	Bacillus_phage	82.2	6.2e-69
AYK76496.1|3663972_3664347_-	HNH endonuclease	NA	Q38456	Bacillus_phage	82.3	7.5e-60
AYK75844.1|3664396_3665143_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75845.1|3665673_3666303_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75846.1|3666453_3666837_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75847.1|3667489_3668032_-|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	63.9	5.8e-61
AYK76497.1|3668028_3668481_-	ArpU family transcriptional regulator	NA	S6AVV9	Thermus_phage	55.9	1.7e-37
AYK75848.1|3668763_3668964_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75849.1|3668960_3669380_-	hypothetical protein	NA	A0A2I6UHP7	Bacillus_phage	61.2	1.6e-42
AYK75850.1|3669376_3669709_-	hypothetical protein	NA	F8WQ59	Bacillus_phage	53.3	8.3e-18
AYK75851.1|3669708_3670365_-	dUTPase	NA	R9TQ23	Paenibacillus_phage	46.0	5.8e-39
AYK75852.1|3670482_3670740_-	hypothetical protein	NA	A0A2H4JA61	uncultured_Caudovirales_phage	41.7	6.6e-07
AYK75853.1|3670736_3671144_-	hypothetical protein	NA	W8CYU3	Bacillus_phage	45.8	1.3e-25
AYK75854.1|3671140_3671458_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75855.1|3671454_3671817_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AYK75856.1|3671859_3672057_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75857.1|3672303_3672444_-	BH0509 family protein	NA	NA	NA	NA	NA
AYK75858.1|3672551_3673100_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75859.1|3673414_3674242_-	ATP-binding protein	NA	A0A0U3U1U1	Bacillus_phage	35.9	3.7e-35
AYK75860.1|3674225_3675107_-	replication protein	NA	V9QKF6	Oenococcus_phage	33.1	6.8e-27
AYK75861.1|3675099_3675318_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75862.1|3675342_3675534_-	helix-turn-helix domain-containing protein	NA	A0A1B2APY7	Phage_Wrath	59.0	1.0e-12
AYK75863.1|3675585_3675789_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYK75864.1|3676023_3676422_+	XRE family transcriptional regulator	NA	S5M5X8	Brevibacillus_phage	33.7	4.3e-05
AYK75865.1|3679850_3680321_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	63.4	3.2e-47
AYK75866.1|3680465_3682805_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	43.4	1.3e-88
AYK75867.1|3682823_3683564_-	carboxylesterase	NA	NA	NA	NA	NA
AYK75868.1|3683695_3683926_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AYK75869.1|3684074_3684848_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYK75870.1|3684881_3685115_-	transcriptional regulator	NA	NA	NA	NA	NA
AYK75871.1|3685266_3685674_+	transcriptional regulator	NA	S6C481	Thermus_phage	64.8	1.9e-16
AYK75872.1|3685703_3686123_+	XRE family transcriptional regulator	NA	S6C481	Thermus_phage	62.7	5.4e-14
AYK75873.1|3686214_3686541_+	HxlR family transcriptional regulator	NA	NA	NA	NA	NA
AYK75874.1|3686668_3688369_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.8	8.0e-24
AYK75875.1|3688500_3689853_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
3689900:3691460	attR	AAGAAACTGTATAAAACAAAAAAGCTTGTAGAAAAAACGTCGTTTTCTCTACAAGCTGAAGAGGCTGGACTCCAGCCTCTTTTTTCTATTCTATGCAGCTGATTGAACGTGTTTCGCCCCGGTTCTTTTTTTCTTCACCGGACTTAATATCCGCTCCAGCCAGGCCATGAGTAAATCCGCCCCTACCGCCATTACCGCAGTCGGGATCGCTCCGGCTAGAATAATCGCAGTTCCGTTTGTCGCGTTTGAGCCGCGGACGATCATGTCCCCAAGGCCTCCGGCACCGACAAATGTGCCGATCGCTGTAATTCCAATGGCAATGACGAGAGCCGTGCGAAGGCCCGCCATCATGACAGAAAGTGCGAGCGGGAGCTCAACCATTCTGAGCACTTGGAATTTCGTCATGCCCATTGCTTTACCCGATTCTAAGTAGGTATGTTCAATACTGATAATGCCTGTGTACGTGTTTCGAATAATCGGCAGCAGGGAATACAGAAATAATGATAGAATCACGGTATTTGCGCCGAGCCCCATAACAAGCATTAAGACGGCCAGCATAGCGAGCGCCGGGATTGTTTGAATAACGTTTGTCACGGCAAACACCCAGGCTGACAAACGGCGAAAATGCGCGATGAGGATTCCGACCGGAACCCCGACGACAGCGGCAAACAATACGCCGTAAGCCGACATGAGAAAGTGGCGGCCGAATTCATCCATGACGTAACTGCCATTCTGCGCGTAATACGTCATTAACTGTTCAAGCACGTTCATTGACCTCTTCCCCCTTTCACGATTCGAAATAGCGATGTTTTTCTAAATATTCCTTGGCAACGACAGACGGTTCTTTGAGATTGCCGTCGACTTCATAGTTAAGCTCCTGCATCGTGGCTGTGTCGATTTTTCCGAGCATTTTCTTGATGATGCCTTCAAGTTCAGGATGTTCTTTGAGCACCTTTTCCGGAACAACCGGAGAGCAATCGTACGGCGGGAAAAATTGTTTGTCATCCTTTAGCATTTTGAGACCATAGGACTTGATTCTTCCATCGGTTGAATACGCAAGCACAATGTCCATTTTTCCGCTTTTCACCGCGTCGTACACAAGGCCGATCTGCATCGGATACGTGCCGCCGAATGTCATGCCGTAGGTTTTCGTAAAATCCTGATAGCCGTTTCCTTTGAGCTTCATCCAATAGTTATCAACGCCCAGCTTTAATTGCGGGGCCCATTTTTTAACGTCTGATACGGTCTCTAAATGGTATTGGTCGGCCAGCTCCCTGCTGACTGTAAAGGCATATGTATTATCAAACCCGTAGGAGTCATACCACTTTAAATCATATCTTTTTTTAAACTCCCGCTGAGTAAGCGCCAGCGCTTTGTCCGGGTCTTTTTCCGGTTGCATTCTCAGCGTGCCTGTCAGCGCGTCTCCCGTATATCTTGTGGCCGCAATGTCGATTTCATCATTCATTAAAGCCTGCTGCTGCACCGCGTTGGAGCCAAGATTTTTAATCGTTGTTGTTTTGAGATCAGTATGATGTTCGATCAACTGGCCAAGCATGCTGGC	NA	NA	NA	NA
>prophage 13
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	3816115	3855686	4191876	protease,transposase,holin	Staphylococcus_phage(28.57%)	34	NA	NA
AYK75987.1|3816115_3817265_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
AYK75988.1|3817308_3817827_-	acetyltransferase	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	25.7	5.6e-05
AYK75989.1|3817830_3818481_-	pyrophosphatase PpaX	NA	NA	NA	NA	NA
AYK75990.1|3818477_3819416_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75991.1|3819439_3820249_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AYK75992.1|3820262_3821195_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AYK75993.1|3821376_3822567_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
AYK75994.1|3822563_3823292_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
AYK75995.1|3823309_3824041_+	transcriptional regulator	NA	NA	NA	NA	NA
AYK75996.1|3824062_3827932_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75997.1|3827991_3828228_-	hypothetical protein	NA	NA	NA	NA	NA
AYK75998.1|3828232_3829585_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK75999.1|3829711_3830071_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AYK76000.1|3830072_3830270_-	PspC domain-containing protein	NA	NA	NA	NA	NA
AYK76001.1|3830274_3831372_-	DUF4097 domain-containing protein	NA	NA	NA	NA	NA
AYK76002.1|3831396_3831723_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76003.1|3831940_3832171_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76004.1|3832364_3833186_-	flagellin	NA	NA	NA	NA	NA
AYK76005.1|3833524_3836398_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.4	0.0e+00
AYK76006.1|3836405_3838391_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AYK76007.1|3838576_3838807_-	protein CsbA	NA	NA	NA	NA	NA
AYK76008.1|3839252_3841748_+	phosphotransferase	NA	NA	NA	NA	NA
AYK76009.1|3841823_3842393_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AYK76010.1|3842423_3843758_+	MFS transporter	NA	NA	NA	NA	NA
AYK76011.1|3843805_3844999_-|protease	serine protease	protease	NA	NA	NA	NA
AYK76012.1|3845077_3845431_-	swarming motility protein SwrAA	NA	NA	NA	NA	NA
AYK76013.1|3845814_3847257_-|protease	carboxy-terminal processing protease CtpB	protease	A0A0R6PIZ1	Moraxella_phage	27.8	6.3e-22
AYK76502.1|3847396_3848287_-	ABC transporter permease	NA	NA	NA	NA	NA
AYK76014.1|3848279_3848966_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.0	2.9e-25
AYK76015.1|3849199_3849538_-	cytochrome c551	NA	NA	NA	NA	NA
AYK76016.1|3849586_3850471_-	YitT family protein	NA	NA	NA	NA	NA
AYK76017.1|3850597_3851699_-	peptide chain release factor 2	NA	NA	NA	NA	NA
AYK76018.1|3851768_3854294_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
AYK76019.1|3854536_3855686_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	1.7e-38
>prophage 14
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	4038583	4059322	4191876	bacteriocin,tRNA,transposase	Shigella_phage(25.0%)	19	NA	NA
AYK76206.1|4038583_4039773_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.6	1.6e-31
AYK76207.1|4039874_4041482_-	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.1	1.0e-153
AYK76208.1|4041723_4042230_-	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
AYK76209.1|4042412_4043552_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AYK76210.1|4043548_4045666_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AYK76211.1|4045820_4047017_+	cardiolipin synthase	NA	NA	NA	NA	NA
AYK76212.1|4047029_4047992_+	UV DNA damage repair endonuclease UvsE	NA	A0A127AW32	Bacillus_phage	34.2	1.7e-39
AYK76213.1|4048072_4048345_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76214.1|4049974_4051645_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AYK76215.1|4051641_4052070_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
AYK76216.1|4052384_4052516_+|bacteriocin	subtilosin A family bacteriocin	bacteriocin	NA	NA	NA	NA
AYK76217.1|4052472_4052625_+|bacteriocin	bacteriocin-like protein SboX	bacteriocin	NA	NA	NA	NA
AYK76218.1|4052649_4053996_+	subtilosin maturase AlbA	NA	NA	NA	NA	NA
AYK76219.1|4054008_4054170_+|bacteriocin	antilisterial bacteriocin subtilosin biosynthesis protein AlbB	bacteriocin	NA	NA	NA	NA
AYK76220.1|4054166_4054886_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.6e-18
AYK76221.1|4054878_4056189_+|bacteriocin	antilisterial bacteriocin subtilosin biosynthesis protein AlbD	bacteriocin	NA	NA	NA	NA
AYK76508.1|4056178_4057339_+	insulinase family protein	NA	NA	NA	NA	NA
AYK76222.1|4057343_4058624_+	insulinase family protein	NA	NA	NA	NA	NA
AYK76223.1|4058620_4059322_+|bacteriocin	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	bacteriocin	NA	NA	NA	NA
>prophage 15
CP032857	Bacillus subtilis subsp. subtilis strain 2RL2-3 chromosome, complete genome	4191876	4069334	4119868	4191876	coat,protease,tRNA,transposase	Streptococcus_phage(15.38%)	51	NA	NA
AYK76232.1|4069334_4069994_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
AYK76233.1|4070102_4070291_+	2-hydroxymuconate tautomerase	NA	NA	NA	NA	NA
AYK76234.1|4070333_4070753_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AYK76235.1|4070872_4072789_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	43.4	1.9e-143
AYK76236.1|4073398_4073554_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76237.1|4073633_4075034_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
AYK76238.1|4075033_4075504_-	transcriptional regulator	NA	NA	NA	NA	NA
AYK76239.1|4075615_4076116_-	YwgA family protein	NA	NA	NA	NA	NA
AYK76240.1|4076151_4077453_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	28.9	4.2e-25
AYK76241.1|4077614_4077839_-	DUF1450 domain-containing protein	NA	NA	NA	NA	NA
AYK76242.1|4078053_4078830_+	RsfA family transcriptional regulator	NA	A0A1D6X8E5	Bacillus_phage	50.0	7.6e-06
AYK76243.1|4078973_4079864_-	DMT family transporter	NA	NA	NA	NA	NA
AYK76244.1|4080032_4080878_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AYK76245.1|4080926_4081826_-	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	42.5	3.6e-07
AYK76246.1|4081971_4082943_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AYK76247.1|4083212_4083977_+	heme-binding protein	NA	NA	NA	NA	NA
AYK76248.1|4084109_4084889_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYK76249.1|4084904_4086119_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AYK76250.1|4086119_4087304_-	MFS transporter	NA	NA	NA	NA	NA
AYK76251.1|4087300_4088719_-	alanine-anticapsin ligase BacD	NA	NA	NA	NA	NA
AYK76509.1|4088737_4089499_-	dihydroanticapsin 7-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.9	2.8e-21
AYK76252.1|4089501_4090209_-	bacilysin biosynthesis protein BacB	NA	NA	NA	NA	NA
AYK76253.1|4090198_4090813_-	bacilysin biosynthesis protein BacA	NA	NA	NA	NA	NA
AYK76254.1|4091037_4092390_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK76255.1|4092541_4093780_-	MFS transporter	NA	NA	NA	NA	NA
AYK76256.1|4093989_4095402_-	amino acid permease	NA	NA	NA	NA	NA
AYK76257.1|4095401_4097102_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
AYK76258.1|4097175_4098723_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AYK76259.1|4098949_4100224_-	catabolic NAD-specific glutamate dehydrogenase RocG	NA	NA	NA	NA	NA
AYK76260.1|4100401_4100866_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76261.1|4101190_4101646_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK76262.1|4101638_4102490_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.3	1.7e-38
AYK76263.1|4102503_4103451_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	43.8	4.4e-72
AYK76264.1|4103450_4104191_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	42.0	7.7e-48
AYK76265.1|4104215_4105235_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK76266.1|4105237_4105960_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK76267.1|4105952_4107074_-|coat	spore coat protein	coat	NA	NA	NA	NA
AYK76268.1|4107073_4107943_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYK76269.1|4107943_4109113_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A1D8KU11	Synechococcus_phage	27.2	6.5e-17
AYK76270.1|4109133_4110555_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
AYK76271.1|4110559_4111330_-	glycosyltransferase family 2 protein	NA	A0A0F7L2F7	uncultured_marine_virus	28.6	3.4e-06
AYK76272.1|4111295_4111502_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76273.1|4111649_4112180_+|coat	spore coat protein GerQ	coat	NA	NA	NA	NA
AYK76274.1|4112223_4112595_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AYK76275.1|4112656_4113979_-	purine permease	NA	NA	NA	NA	NA
AYK76276.1|4113998_4114316_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76277.1|4114483_4115854_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AYK76278.1|4115877_4116555_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	46.1	8.3e-49
AYK76279.1|4116568_4117375_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AYK76280.1|4117566_4118382_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AYK76281.1|4118515_4119868_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
>prophage 1
CP032858	Bacillus subtilis subsp. subtilis strain 2RL2-3 plasmid unnamed1, complete sequence	143743	78293	124873	143743	transposase	Bacillus_phage(45.45%)	55	NA	NA
AYK76593.1|78293_79370_+|transposase	transposase	transposase	A0A0A8WI33	Clostridium_phage	32.1	2.2e-19
AYK76594.1|79736_80243_+	hypothetical protein	NA	A0A1Z1LZN4	Bacillus_phage	36.2	2.6e-07
AYK76595.1|80491_80701_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76596.1|81222_82575_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	41.8	1.4e-87
AYK76597.1|82683_83493_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76598.1|84021_84546_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76599.1|84558_84882_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76600.1|85089_85410_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76601.1|85930_87232_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76602.1|87273_87951_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76603.1|87978_88479_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76604.1|88517_89264_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76605.1|89277_90141_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76606.1|90179_91673_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76607.1|91856_92639_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76608.1|92837_93185_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76609.1|93197_94487_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76610.1|94542_94836_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76611.1|94867_95236_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76612.1|95318_96092_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76613.1|96513_97233_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1B1P7V3	Bacillus_phage	25.7	5.8e-08
AYK76614.1|97412_97598_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76615.1|97604_97784_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76616.1|97854_98127_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76617.1|98315_98615_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76618.1|98730_99027_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76619.1|99061_99742_+	nucleic acid-binding protein	NA	NA	NA	NA	NA
AYK76620.1|101216_102569_+	RepB family plasmid replication initiator protein	NA	E5FFJ0	Burkholderia_phage	27.3	1.8e-10
AYK76664.1|103180_103633_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76621.1|103749_104997_+	DUF5068 domain-containing protein	NA	NA	NA	NA	NA
AYK76622.1|105342_105579_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYK76623.1|105674_105914_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYK76624.1|106166_106985_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76625.1|107248_107449_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76626.1|107497_107851_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76627.1|107946_108261_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76628.1|108735_109020_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76629.1|109302_109737_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76630.1|110000_110717_-	hypothetical protein	NA	A0A172JI11	Bacillus_phage	56.4	5.5e-75
AYK76631.1|110974_111430_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76632.1|111794_112175_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76633.1|112259_112682_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76634.1|112707_113076_-	hypothetical protein	NA	NA	NA	NA	NA
AYK76635.1|113869_114640_+	hypothetical protein	NA	O64016	Bacillus_phage	49.6	3.4e-30
AYK76636.1|115294_115492_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76637.1|115472_115679_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76638.1|116033_116258_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76639.1|116548_117757_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76640.1|118097_118520_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	46.0	2.3e-25
AYK76641.1|118585_119977_+|transposase	transposase	transposase	NA	NA	NA	NA
AYK76642.1|120589_121720_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	71.9	8.4e-155
AYK76643.1|121709_121892_+	hypothetical protein	NA	NA	NA	NA	NA
AYK76644.1|122088_122838_+	Fic family protein	NA	K7WHW6	White_spot_syndrome_virus	31.5	3.5e-08
AYK76645.1|122992_123415_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	46.0	3.1e-25
AYK76646.1|123481_124873_+|transposase	transposase	transposase	NA	NA	NA	NA
