The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033041	Enterococcus faecium strain JE1 chromosome, complete genome	2724445	983669	1050202	2724445	capsid,integrase,tRNA,tail,transposase	Bacillus_phage(26.67%)	68	1021250:1021266	1039234:1039250
AYM72646.1|983669_984842_+|transposase	IS256 family transposase IS1542	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
AYM72647.1|985601_986351_-	response regulator	NA	NA	NA	NA	NA
AYM74244.1|986470_987616_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AYM72648.1|987822_990027_+	beta-glucosidase	NA	NA	NA	NA	NA
AYM72649.1|990042_991389_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AYM72650.1|991388_992303_+	ROK family protein	NA	NA	NA	NA	NA
AYM72651.1|992286_993654_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	28.5	8.6e-45
AYM72652.1|993658_994624_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AYM72653.1|994661_996218_+	DNA recombination protein RuvA	NA	NA	NA	NA	NA
AYM72654.1|998219_999257_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYM72655.1|999281_1000034_+	phosphonate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	2.0e-27
AYM72656.1|1000045_1000843_+	phosphate/phosphonate ABC transporter permease	NA	NA	NA	NA	NA
AYM72657.1|1000842_1001730_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AYM72658.1|1001756_1002572_+	histidinol-phosphatase	NA	NA	NA	NA	NA
AYM72659.1|1002665_1003160_+	N-acetyltransferase	NA	NA	NA	NA	NA
AYM72660.1|1003531_1004425_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
AYM72661.1|1004588_1005479_+	transcriptional regulator	NA	NA	NA	NA	NA
AYM72662.1|1005495_1006353_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
AYM72663.1|1006374_1007073_+	DUF1361 domain-containing protein	NA	NA	NA	NA	NA
AYM72664.1|1007047_1007704_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	40.5	2.9e-38
AYM72665.1|1009079_1009673_+	hypothetical protein	NA	NA	NA	NA	NA
AYM72666.1|1009884_1011549_+	acetolactate synthase AlsS	NA	NA	NA	NA	NA
AYM72667.1|1011561_1012272_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
AYM72668.1|1012400_1012898_+	GAF domain-containing protein	NA	NA	NA	NA	NA
AYM72669.1|1012907_1013087_+	hypothetical protein	NA	NA	NA	NA	NA
AYM72670.1|1013083_1013344_+	hypothetical protein	NA	NA	NA	NA	NA
AYM72671.1|1013557_1013824_-	hypothetical protein	NA	NA	NA	NA	NA
AYM72672.1|1014725_1015499_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AYM72673.1|1015642_1015993_+	SdpI family protein	NA	NA	NA	NA	NA
AYM72674.1|1015973_1016690_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.2	6.1e-34
AYM72675.1|1016689_1018138_+	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	6.0e-20
AYM72676.1|1018210_1018720_-	hypothetical protein	NA	NA	NA	NA	NA
AYM72677.1|1018709_1019435_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
AYM72678.1|1019606_1021727_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.4	5.7e-221
1021250:1021266	attL	CCATTCTTGCTCGAATC	NA	NA	NA	NA
AYM72679.1|1021955_1023134_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	49.5	6.0e-103
AYM72680.1|1023149_1023902_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.8	3.8e-26
AYM72681.1|1023924_1024410_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AYM72682.1|1024480_1025734_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	4.5e-24
AYM72683.1|1025850_1027200_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AYM72684.1|1027311_1028658_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYM72685.1|1028548_1028764_-	hypothetical protein	NA	NA	NA	NA	NA
AYM72686.1|1028760_1029984_-|integrase	site-specific integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	43.0	3.3e-80
AYM72687.1|1030162_1031029_-	hypothetical protein	NA	NA	NA	NA	NA
AYM72688.1|1031150_1031717_-	DUF5067 domain-containing protein	NA	NA	NA	NA	NA
AYM74245.1|1031853_1031991_-	SHOCT domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	64.1	2.5e-05
AYM72689.1|1031944_1032544_-	glycine zipper family protein	NA	X5JB37	Clostridium_phage	48.0	5.7e-17
AYM72690.1|1032603_1033071_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	38.0	3.5e-22
AYM72691.1|1033081_1033408_-	XRE family transcriptional regulator	NA	A8ATJ9	Listeria_phage	58.2	2.1e-18
AYM72692.1|1033579_1033804_+	XRE family transcriptional regulator	NA	A8ATK0	Listeria_phage	62.7	4.6e-12
AYM72693.1|1034015_1034570_+	hypothetical protein	NA	NA	NA	NA	NA
AYM72694.1|1034695_1035857_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
AYM72695.1|1036043_1036448_+	hypothetical protein	NA	Q5YA68	Bacillus_phage	61.9	1.4e-40
AYM72696.1|1036441_1036783_+|capsid	minor capsid protein	capsid	Q5YA67	Bacillus_phage	60.2	3.1e-36
AYM72697.1|1036782_1037109_+|capsid	capsid protein	capsid	Q5YA66	Bacillus_phage	54.4	1.1e-27
AYM72698.1|1037108_1037510_+|capsid	capsid protein	capsid	Q5YA65	Bacillus_phage	55.0	1.7e-38
AYM72699.1|1037506_1037965_+|tail	phage tail protein	tail	Q5YA64	Bacillus_phage	49.0	3.8e-29
AYM72700.1|1037945_1038305_+	fibronectin type III domain-containing protein	NA	NA	NA	NA	NA
AYM72701.1|1038345_1038780_+	hypothetical protein	NA	A0A141DZI4	Streptococcus_phage	28.1	1.8e-09
AYM72702.1|1038788_1039370_+	hypothetical protein	NA	Q5YA62	Bacillus_phage	49.0	1.0e-39
1039234:1039250	attR	CCATTCTTGCTCGAATC	NA	NA	NA	NA
AYM72703.1|1039362_1042845_+|tail	phage tail tape measure protein	tail	Q938K3	Temperate_phage	52.6	3.5e-10
AYM72704.1|1042849_1043683_+|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	44.6	1.4e-58
AYM72705.1|1043691_1044735_+	hypothetical protein	NA	Q9T1A5	Listeria_phage	54.4	2.1e-104
AYM72706.1|1044734_1045784_+	hypothetical protein	NA	Q9T1A4	Listeria_phage	32.7	3.9e-21
AYM72707.1|1045783_1048018_+	DUF2479 domain-containing protein	NA	A0A096XSZ6	Enterococcus_phage	43.0	3.5e-59
AYM72708.1|1048036_1048483_+	hypothetical protein	NA	NA	NA	NA	NA
AYM72709.1|1048484_1048622_+	XkdX family protein	NA	NA	NA	NA	NA
AYM72710.1|1048659_1048953_+	hypothetical protein	NA	NA	NA	NA	NA
AYM72711.1|1049185_1050202_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	65.5	9.2e-60
>prophage 2
CP033041	Enterococcus faecium strain JE1 chromosome, complete genome	2724445	1582406	1591454	2724445		Synechococcus_phage(16.67%)	9	NA	NA
AYM73196.1|1582406_1582985_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.0e-26
AYM74260.1|1582981_1584025_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.7e-61
AYM73197.1|1584056_1585496_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
AYM73198.1|1585480_1587703_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	3.5e-152
AYM73199.1|1587703_1588375_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AYM73200.1|1588376_1588631_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AYM73201.1|1588630_1589359_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	40.9	1.6e-42
AYM73202.1|1589614_1589992_+	hypothetical protein	NA	NA	NA	NA	NA
AYM73203.1|1590158_1591454_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	7.7e-19
>prophage 3
CP033041	Enterococcus faecium strain JE1 chromosome, complete genome	2724445	1941852	2018637	2724445	capsid,integrase,tRNA,tail,head,holin,terminase,protease,portal	Enterococcus_phage(54.05%)	94	1977937:1977972	2017986:2018021
AYM73514.1|1941852_1944651_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.6	1.1e-75
AYM73515.1|1944911_1945619_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
AYM73516.1|1945639_1946422_-	RNA-binding protein	NA	NA	NA	NA	NA
AYM73517.1|1946470_1946758_-	YggT family protein	NA	NA	NA	NA	NA
AYM73518.1|1946772_1947372_-	DUF552 domain-containing protein	NA	NA	NA	NA	NA
AYM73519.1|1947385_1948063_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AYM73520.1|1948079_1949321_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AYM73521.1|1949343_1950669_-	cell division protein FtsA	NA	NA	NA	NA	NA
AYM73522.1|1950824_1952057_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
AYM73523.1|1952071_1953160_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AYM73524.1|1953185_1954547_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AYM73525.1|1954560_1955523_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AYM73526.1|1955548_1957741_-	penicillin-binding protein	NA	NA	NA	NA	NA
AYM74271.1|1957741_1958143_-	cell division protein FtsL	NA	NA	NA	NA	NA
AYM73527.1|1958147_1959107_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
AYM73528.1|1959127_1959559_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AYM73529.1|1959728_1960097_-	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
AYM73530.1|1960267_1961224_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
AYM73531.1|1961296_1961413_+	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
AYM73532.1|1961466_1963149_-	DNA repair protein RecN	NA	NA	NA	NA	NA
AYM73533.1|1963166_1963616_-	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
AYM73534.1|1963722_1964541_-	TlyA family RNA methyltransferase	NA	NA	NA	NA	NA
AYM73535.1|1964549_1965440_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
AYM73536.1|1965441_1965666_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
AYM73537.1|1965670_1967008_-	exodeoxyribonuclease VII large subunit	NA	L7RDW5	Acanthamoeba_polyphaga_moumouvirus	29.0	5.1e-26
AYM73538.1|1967008_1967863_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.7	3.1e-40
AYM73539.1|1967957_1968407_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
AYM73540.1|1968399_1968825_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
AYM73541.1|1969071_1970136_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
AYM73542.1|1970307_1970553_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AYM73543.1|1970691_1971066_-	DUF956 family protein	NA	NA	NA	NA	NA
AYM73544.1|1971148_1972063_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
AYM73545.1|1972083_1972887_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
AYM73546.1|1972919_1973909_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
AYM73547.1|1974011_1974503_-	PTS fructose transporter subunit IIB	NA	NA	NA	NA	NA
1977937:1977972	attL	ATTAAGCTTCTTGAGCTACTGGATAAACAGACACTT	NA	NA	NA	NA
AYM73548.1|1978149_1978944_+	DUF4428 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	32.9	3.3e-12
AYM73549.1|1979037_1979340_+	hypothetical protein	NA	NA	NA	NA	NA
AYM73550.1|1980111_1980894_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73551.1|1980895_1981333_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73552.1|1981307_1981817_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73553.1|1982054_1983071_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	56.5	1.5e-62
AYM73554.1|1983081_1983279_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	82.8	8.6e-23
AYM73555.1|1983301_1983595_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73556.1|1983631_1983769_-	XkdX family protein	NA	NA	NA	NA	NA
AYM73557.1|1983770_1984217_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73558.1|1984230_1986468_-	DUF2479 domain-containing protein	NA	A0A288TYH2	Enterococcus_phage	54.5	5.8e-107
AYM73559.1|1986483_1987242_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74272.1|1987255_1989040_-	DUF2479 domain-containing protein	NA	Q9AZX4	Lactococcus_phage	43.1	1.9e-39
AYM73560.1|1989014_1991846_-	peptidase M23	NA	A0A1P8BMB8	Lactococcus_phage	60.4	0.0e+00
AYM74273.1|1991842_1992610_-|tail	phage tail protein	tail	D7RWD9	Brochothrix_phage	45.1	1.2e-59
AYM73561.1|1992642_1995465_-|tail	phage tail tape measure protein	tail	Q9G097	Lactococcus_phage	71.1	1.4e-169
AYM73562.1|1995481_1995742_-	hypothetical protein	NA	A0A2P1JTY6	Anoxybacillus_phage	50.0	1.6e-05
AYM73563.1|1995822_1996191_-	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	54.8	8.6e-24
AYM73564.1|1996236_1996749_-|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	66.9	1.9e-58
AYM73565.1|1996759_1997152_-|capsid	phage capsid protein	capsid	Q77K20	Lactococcus_phage	73.8	9.0e-48
AYM73566.1|1997151_1997490_-	HK97 gp10 family phage protein	NA	Q77K21	Lactococcus_phage	59.8	3.0e-31
AYM73567.1|1997473_1997800_-	hypothetical protein	NA	C9E2J7	Enterococcus_phage	70.2	1.2e-37
AYM73568.1|1997796_1998126_-	hypothetical protein	NA	A0A0S2MYD5	Enterococcus_phage	75.5	1.1e-38
AYM73569.1|1998137_1998401_-	hypothetical protein	NA	D2J062	Enterococcus_phage	75.0	6.5e-10
AYM73570.1|1998418_1999342_-|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	77.5	1.8e-139
AYM73571.1|1999354_1999957_-	DUF4355 domain-containing protein	NA	A0A097BY91	Enterococcus_phage	52.5	1.1e-36
AYM73572.1|2000083_2001010_-|head	phage head morphogenesis protein	head	A0A1L2JXH2	Streptococcus_phage	58.7	9.8e-93
AYM73573.1|2001014_2002514_-|portal	phage portal protein	portal	A0A097BY86	Enterococcus_phage	78.9	2.1e-222
AYM73574.1|2002526_2003771_-|terminase	PBSX family phage terminase large subunit	terminase	D2IYW1	Enterococcus_phage	81.6	3.8e-201
AYM73575.1|2003757_2004606_-|terminase	small subunit of terminase	terminase	D2IYW0	Enterococcus_phage	64.2	5.3e-85
AYM73576.1|2004652_2005390_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73577.1|2005531_2005762_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73578.1|2005768_2005981_-	hypothetical protein	NA	D2IZF7	Enterococcus_phage	59.6	3.8e-08
AYM73579.1|2006030_2006972_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73580.1|2007363_2007780_-	autolysin	NA	C9E2P5	Enterococcus_phage	68.1	4.8e-47
AYM73581.1|2007856_2008153_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73582.1|2008149_2008353_-	toxin PIN	NA	NA	NA	NA	NA
AYM73583.1|2008349_2008724_-	hypothetical protein	NA	F0PIH7	Enterococcus_phage	70.5	3.5e-41
AYM73584.1|2008720_2009032_-	hypothetical protein	NA	D2IZY1	Enterococcus_phage	72.7	1.6e-34
AYM73585.1|2009031_2009322_-	hypothetical protein	NA	D2IZR3	Enterococcus_phage	44.4	8.2e-14
AYM73586.1|2009315_2009627_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73587.1|2009623_2009785_-	antitoxin	NA	NA	NA	NA	NA
AYM73588.1|2009781_2010084_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73589.1|2010246_2010516_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73590.1|2010527_2011277_-	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.3e-31
AYM73591.1|2011280_2011967_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.0	2.9e-89
AYM73592.1|2011972_2012707_-	DUF1071 domain-containing protein	NA	A0A2I7RDU5	Vibrio_phage	51.6	2.8e-42
AYM73593.1|2012699_2013041_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73594.1|2013559_2013844_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73595.1|2013821_2014034_-	XRE family transcriptional regulator	NA	D2IZW2	Enterococcus_phage	52.7	3.4e-09
AYM73596.1|2014036_2014813_-	phage antirepressor	NA	B2ZYU5	Staphylococcus_phage	54.8	4.7e-72
AYM73597.1|2014889_2015090_+	hypothetical protein	NA	NA	NA	NA	NA
AYM73598.1|2015061_2015292_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73599.1|2015590_2015938_+	XRE family transcriptional regulator	NA	A0A097QQ00	Enterococcus_phage	61.6	9.2e-28
AYM74274.1|2015973_2016369_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
AYM73600.1|2016422_2016734_+	hypothetical protein	NA	NA	NA	NA	NA
AYM73601.1|2016745_2017894_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	40.1	3.0e-67
AYM73602.1|2017986_2018280_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
2017986:2018021	attR	ATTAAGCTTCTTGAGCTACTGGATAAACAGACACTT	NA	NA	NA	NA
AYM73603.1|2018292_2018637_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
>prophage 4
CP033041	Enterococcus faecium strain JE1 chromosome, complete genome	2724445	2037848	2046443	2724445		Streptococcus_phage(66.67%)	9	NA	NA
AYM73623.1|2037848_2040038_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.7	6.8e-286
AYM73624.1|2040475_2041078_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.0	2.2e-53
AYM73625.1|2041131_2042253_-	DNA polymerase IV	NA	NA	NA	NA	NA
AYM73626.1|2042361_2043234_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	6.2e-89
AYM73627.1|2043302_2043650_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
AYM73628.1|2043642_2044467_-	signal peptidase	NA	NA	NA	NA	NA
AYM73629.1|2044502_2045441_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.8	6.1e-34
AYM73630.1|2045454_2045784_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73631.1|2045798_2046443_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
>prophage 5
CP033041	Enterococcus faecium strain JE1 chromosome, complete genome	2724445	2281315	2304950	2724445	bacteriocin,protease,transposase	Bacillus_phage(37.5%)	22	NA	NA
AYM73841.1|2281315_2281978_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AYM73842.1|2282054_2283353_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AYM73843.1|2283522_2284152_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AYM73844.1|2284253_2285063_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.6	3.1e-34
AYM73845.1|2285117_2285987_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73846.1|2285987_2287304_-	hypothetical protein	NA	NA	NA	NA	NA
AYM73847.1|2287300_2289136_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	5.2e-37
AYM73848.1|2289140_2289845_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	41.6	4.4e-45
AYM73849.1|2290034_2290895_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	24.5	6.0e-12
AYM73850.1|2290884_2291451_-	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
AYM73851.1|2292401_2292788_-	DUF4064 domain-containing protein	NA	NA	NA	NA	NA
AYM73852.1|2292784_2293306_-	RDD family protein	NA	NA	NA	NA	NA
AYM73853.1|2293307_2294342_-	signal peptide peptidase SppA	NA	A0A1C9LW82	Vibrio_phage	29.2	6.6e-13
AYM74277.1|2294374_2295790_-	HlyD family secretion protein	NA	NA	NA	NA	NA
AYM73854.1|2295758_2297912_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	1.8e-41
AYM73855.1|2298169_2298406_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AYM73856.1|2298424_2298649_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
AYM73857.1|2298804_2299713_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AYM73858.1|2300376_2301129_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AYM73859.1|2301284_2302457_+|transposase	IS256 family transposase IS1542	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
AYM73860.1|2302484_2303723_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
AYM73861.1|2303777_2304950_-|transposase	IS256 family transposase IS1542	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
>prophage 1
CP033042	Enterococcus faecium strain JE1 plasmid unnamed, complete sequence	78861	13506	70021	78861	transposase,holin	Staphylococcus_phage(28.57%)	56	NA	NA
AYM74303.1|13506_13710_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AYM74304.1|13850_14336_-	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	59.9	1.7e-43
AYM74305.1|14338_15238_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
AYM74306.1|15250_15844_-	abortive infection protein	NA	NA	NA	NA	NA
AYM74368.1|16083_17760_-	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	51.4	7.2e-118
AYM74307.1|17765_18482_-	topoisomerase	NA	F2Y1B5	Organic_Lake_phycodnavirus	32.9	3.3e-11
AYM74308.1|18489_19950_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74309.1|20010_22383_-	hypothetical protein	NA	B5SP25	Lactococcus_phage	29.3	2.9e-11
AYM74310.1|22395_22590_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74311.1|22735_23071_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74312.1|23082_24675_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74313.1|24693_25116_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74314.1|25117_25414_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74315.1|25711_25900_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74316.1|25917_26148_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74317.1|26170_26977_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74318.1|26987_27632_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74319.1|27647_28853_-	peptidase M23	NA	Q6SEC2	Lactobacillus_prophage	41.3	1.3e-31
AYM74320.1|28852_30877_-	ATPase	NA	NA	NA	NA	NA
AYM74321.1|32104_32365_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74322.1|32412_33006_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74323.1|33006_33339_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74324.1|33390_35787_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74325.1|35783_38393_-	type IV secretory protein	NA	NA	NA	NA	NA
AYM74326.1|38392_40456_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74327.1|40525_40828_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74328.1|40845_41088_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74329.1|41084_41549_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74330.1|41575_43666_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
AYM74331.1|43662_43923_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74332.1|43935_44691_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74333.1|44706_45459_-	class C sortase	NA	NA	NA	NA	NA
AYM74334.1|45455_47450_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
AYM74335.1|47502_48174_-	class A sortase	NA	NA	NA	NA	NA
AYM74336.1|48530_49133_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74337.1|49259_49454_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74338.1|49563_49803_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74339.1|49969_50152_-	hypothetical protein	NA	F0PIH7	Enterococcus_phage	57.9	7.7e-10
AYM74340.1|50929_51262_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
AYM74341.1|52086_53127_-	replication protein RepA	NA	NA	NA	NA	NA
AYM74342.1|54088_55261_+|transposase	IS256 family transposase IS1542	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
AYM74343.1|56747_57002_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AYM74344.1|57002_57320_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYM74345.1|57826_58513_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	6.5e-126
AYM74346.1|58720_59050_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AYM74347.1|59039_59327_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AYM74348.1|59612_60470_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
AYM74349.1|60470_61019_+	hypothetical protein	NA	NA	NA	NA	NA
AYM74350.1|61278_62007_+	peptidase	NA	A0A1B0T6A2	Bacillus_phage	26.1	3.1e-09
AYM74351.1|62036_63179_+	hypothetical protein	NA	A0A217EQY2	Bacillus_phage	33.5	1.1e-13
AYM74352.1|63430_64603_+|transposase	IS256 family transposase IS1542	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
AYM74353.1|64640_64829_-	hypothetical protein	NA	NA	NA	NA	NA
AYM74354.1|64821_65607_-	SinI family restriction endonuclease	NA	NA	NA	NA	NA
AYM74355.1|65735_67328_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	50.7	1.8e-126
AYM74356.1|67617_68787_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
AYM74357.1|69067_70021_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	3.7e-34
