assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003671915.1_ASM367191v1	CP032153	Alcaligenes aquatilis strain QD168 chromosome, complete genome	1	1203060-1203929	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		RT,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh,PD-DExK,cas3	Orphan	GTTTGCTGCCGCATAGGCAGCTTAGAAA,GTTTGCTGCCGCATAGGCAGCTTAGAAA,GTTTGCTGCCGCATAGGCAGCTTAGAAA	28,28,28	2	2	1203569-1203600|1203810-1203841	CP032153.1_3122735-3122766|CP032153.1_3126464-3126433	I-F:I-F:I-F	13,14,14	14	Orphan	RT,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh,PD-DExK,cas3	NA,NA	NA|209aa|up_9|CP032153.1_1193633_1194260_+	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase	NA|217aa|up_8|CP032153.1_1194413_1195064_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|302aa|up_7|CP032153.1_1195143_1196049_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|378aa|up_6|CP032153.1_1196045_1197179_+	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]	NA|107aa|up_5|CP032153.1_1197608_1197929_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|139aa|up_4|CP032153.1_1197891_1198308_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|231aa|up_3|CP032153.1_1198324_1199017_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|447aa|up_2|CP032153.1_1199013_1200354_-	PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|389aa|up_1|CP032153.1_1200360_1201527_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|399aa|up_0|CP032153.1_1201523_1202720_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|415aa|down_0|CP032153.1_1204102_1205347_-	pfam03594, BenE, Benzoate membrane transport protein	NA|397aa|down_1|CP032153.1_1205812_1207003_-	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|878aa|down_2|CP032153.1_1207358_1209992_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|417aa|down_3|CP032153.1_1210015_1211266_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|75aa|down_4|CP032153.1_1211280_1211505_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|68aa|down_5|CP032153.1_1211628_1211832_-	pfam06806, DUF1233, Putative excisionase (DUF1233)	NA|97aa|down_6|CP032153.1_1212160_1212451_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|115aa|down_7|CP032153.1_1212660_1213005_+	pfam11171, DUF2958, Protein of unknown function (DUF2958)	NA|266aa|down_8|CP032153.1_1213064_1213862_-	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|495aa|down_9|CP032153.1_1213930_1215415_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCA_003671915.1_ASM367191v1	CP032153	Alcaligenes aquatilis strain QD168 chromosome, complete genome	2	1321862-1325258	2,2,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	RT,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh,PD-DExK,cas3	Type I-F	GTTTGCTGCCGCATAGGCAGCTTAGAAA,GTTTGCTGCCGCATAGGCAGCTTAGAAA,GTTTGCTGCCGCATAGGCAGCTTAGAAA,GTTTGCTGCCGCATAGGCAGCTTAGAAA	28,28,28,28	1	1	1325138-1325170	CP032153.1_3122722-3122754	I-F:I-F:I-F:I-F	50,56,56,50	56	TypeI-F	RT,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh,PD-DExK,cas3	NA|74aa|up_9|CP032153.1_1307879_1308101_+,NA	NA|74aa|up_9|CP032153.1_1307879_1308101_+	NA	NA|371aa|up_8|CP032153.1_1308395_1309508_+	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|732aa|up_7|CP032153.1_1309520_1311716_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|346aa|up_6|CP032153.1_1311881_1312919_+	pfam13358, DDE_3, DDE superfamily endonuclease	cas1|327aa|up_5|CP032153.1_1313109_1314090_+	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas3-cas2|1138aa|up_4|CP032153.1_1314100_1317514_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|463aa|up_3|CP032153.1_1317576_1318965_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|343aa|up_2|CP032153.1_1318961_1319990_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|340aa|up_1|CP032153.1_1320142_1321162_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|189aa|up_0|CP032153.1_1321166_1321733_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|393aa|down_0|CP032153.1_1325621_1326800_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|467aa|down_1|CP032153.1_1328784_1330185_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|255aa|down_2|CP032153.1_1330137_1330902_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|615aa|down_3|CP032153.1_1331032_1332877_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|536aa|down_4|CP032153.1_1333073_1334681_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|344aa|down_5|CP032153.1_1334677_1335709_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|309aa|down_6|CP032153.1_1335784_1336711_-	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|333aa|down_7|CP032153.1_1336707_1337706_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|204aa|down_8|CP032153.1_1337794_1338406_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|278aa|down_9|CP032153.1_1338911_1339745_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS
GCA_003671915.1_ASM367191v1	CP032153	Alcaligenes aquatilis strain QD168 chromosome, complete genome	3	2084800-2084902	3	CRISPRCasFinder	no	csa3	RT,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh,PD-DExK,cas3	Type I-A	CCTTGGGGCGGCCCGGCGGTAAAAAA	26	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh,PD-DExK,cas3	NA,NA|160aa|down_8|CP032153.1_2094108_2094588_-,NA|60aa|down_9|CP032153.1_2094591_2094771_+	NA|557aa|up_9|CP032153.1_2075394_2077065_+	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	NA|160aa|up_8|CP032153.1_2077146_2077626_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|292aa|up_7|CP032153.1_2077659_2078535_-	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only]	NA|291aa|up_6|CP032153.1_2078645_2079518_-	cd08445, PBP2_BenM_CatM_CatR, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold	NA|397aa|up_5|CP032153.1_2079646_2080837_+	TIGR02534, Muconate_cycloisomerase_1-2, muconate and chloromuconate cycloisomerases	NA|312aa|up_4|CP032153.1_2080905_2081841_+	cd03460, 1,2-CTD, Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate	NA|232aa|up_3|CP032153.1_2081966_2082662_+	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit	NA|233aa|up_2|CP032153.1_2082658_2083357_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|268aa|up_1|CP032153.1_2083353_2084157_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|92aa|up_0|CP032153.1_2084192_2084468_+	TIGR03221, muco_delta, muconolactone delta-isomerase	NA|388aa|down_0|CP032153.1_2084981_2086145_+	pfam03594, BenE, Benzoate membrane transport protein	NA|421aa|down_1|CP032153.1_2086158_2087421_+	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|514aa|down_2|CP032153.1_2087420_2088962_+	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|291aa|down_3|CP032153.1_2089298_2090171_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|205aa|down_4|CP032153.1_2090291_2090906_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|370aa|down_5|CP032153.1_2091107_2092217_+	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII	NA|312aa|down_6|CP032153.1_2092260_2093196_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|204aa|down_7|CP032153.1_2093443_2094055_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|160aa|down_8|CP032153.1_2094108_2094588_-	NA	NA|60aa|down_9|CP032153.1_2094591_2094771_+	NA
GCA_003671915.1_ASM367191v1	CP032153	Alcaligenes aquatilis strain QD168 chromosome, complete genome	4	2686200-2686305	4	CRISPRCasFinder	no		RT,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh,PD-DExK,cas3	Orphan	CTTGGGACGGCCCGGCGGCAAAAAAAACC	29	1	1	2686229-2686276	CP032153.1_33157-33110	NA	1	1	Orphan	RT,WYL,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,DEDDh,PD-DExK,cas3	NA,NA|82aa|down_0|CP032153.1_2686356_2686602_-	NA|358aa|up_9|CP032153.1_2673860_2674934_-	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|226aa|up_8|CP032153.1_2675265_2675943_-	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|678aa|up_7|CP032153.1_2676170_2678204_+	pfam13598, DUF4139, Domain of unknown function (DUF4139)	NA|292aa|up_6|CP032153.1_2678213_2679089_-	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator	NA|359aa|up_5|CP032153.1_2679229_2680306_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|604aa|up_4|CP032153.1_2680292_2682104_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|289aa|up_3|CP032153.1_2682111_2682978_+	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional	NA|340aa|up_2|CP032153.1_2683016_2684036_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|377aa|up_1|CP032153.1_2684035_2685166_+	TIGR03364, putative_secreted_oxidoreductase, FAD dependent oxidoreductase TIGR03364	NA|181aa|up_0|CP032153.1_2685499_2686042_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|82aa|down_0|CP032153.1_2686356_2686602_-	NA	NA|221aa|down_1|CP032153.1_2686745_2687408_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|75aa|down_2|CP032153.1_2687414_2687639_+	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor	NA|236aa|down_3|CP032153.1_2687737_2688445_+	PRK11752, PRK11752, putative S-transferase; Provisional	NA|164aa|down_4|CP032153.1_2688761_2689253_+	COG1764, osmC, Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism]	NA|289aa|down_5|CP032153.1_2689256_2690123_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|216aa|down_6|CP032153.1_2690202_2690850_+	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|263aa|down_7|CP032153.1_2690860_2691649_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|391aa|down_8|CP032153.1_2692830_2694003_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|399aa|down_9|CP032153.1_2694221_2695418_-	cd17409, MFS_NIMT_like, 2-nitroimidazole transporter and similar proteins of the Major Facilitator Superfamily of transporters
