The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031059	Xanthomonas axonopodis pv. commiphoreae strain LMG26789 chromosome, complete genome	4764247	480500	569748	4764247	transposase,plate	Enterobacteria_phage(14.29%)	54	NA	NA
AYO93986.1|480500_481004_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AYO93987.1|481008_482892_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AYO93988.1|482855_483896_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AYO93989.1|483952_486691_+	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	29.6	2.3e-81
AYO93990.1|488627_489784_-|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	1.6e-39
AYO93991.1|492694_493771_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AYO97234.1|493761_494289_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AYO93992.1|494638_495178_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AYO93993.1|495156_497676_+	serine/threonine protein kinase	NA	A0A2P1EMR8	Moumouvirus	30.2	8.0e-12
AYO93994.1|497719_498034_+	type VI secretion protein	NA	NA	NA	NA	NA
AYO93995.1|498269_499601_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AYO93996.1|499750_501718_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	27.9	2.5e-37
AYO93997.1|501714_502263_+	hypothetical protein	NA	NA	NA	NA	NA
AYO93998.1|502582_503917_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
AYO97235.1|503975_504857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYO93999.1|505106_505997_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
AYO97236.1|506496_507831_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AYO94000.1|507812_509090_+	type VI secretion system protein TssL	NA	NA	NA	NA	NA
AYO94001.1|509086_512617_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
AYO94002.1|512613_513189_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
AYO94003.1|513185_513902_+	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
AYO94004.1|513906_517596_+	protein kinase	NA	Q0N495	Clanis_bilineata_nucleopolyhedrovirus	29.2	1.2e-08
AYO94005.1|517592_518054_+	hypothetical protein	NA	NA	NA	NA	NA
AYO94006.1|518050_519727_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
AYO94007.1|519738_527922_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA	NA
AYO94008.1|527971_529015_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
AYO94009.1|529370_529661_-	DUF2782 domain-containing protein	NA	NA	NA	NA	NA
AYO94010.1|529737_532539_+	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.1	6.2e-66
AYO94011.1|533381_534281_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
AYO97237.1|534478_534661_+	hypothetical protein	NA	NA	NA	NA	NA
AYO94012.1|534698_535268_-	hypothetical protein	NA	NA	NA	NA	NA
AYO94013.1|535264_535981_-	hypothetical protein	NA	NA	NA	NA	NA
AYO94014.1|536413_538774_-	S9 family peptidase	NA	NA	NA	NA	NA
AYO94015.1|539402_540710_+	AMP-ligase	NA	NA	NA	NA	NA
AYO97238.1|541018_541912_-	pteridine-dependent deoxygenase	NA	NA	NA	NA	NA
AYO94016.1|542022_543372_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AYO94017.1|543675_543945_+	acyl carrier protein	NA	NA	NA	NA	NA
AYO94018.1|543919_544666_+	ketosynthase	NA	NA	NA	NA	NA
AYO94019.1|544719_545469_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AYO94020.1|545480_545768_+	hypothetical protein	NA	NA	NA	NA	NA
AYO94021.1|545764_546739_+	acyltransferase	NA	NA	NA	NA	NA
AYO97239.1|546662_547310_+	fatty acyl CoA synthetase	NA	NA	NA	NA	NA
AYO97240.1|547448_549815_+	hypothetical protein	NA	NA	NA	NA	NA
AYO94022.1|549801_550233_+	phosphotransferase	NA	NA	NA	NA	NA
AYO94023.1|550242_550782_-	hypothetical protein	NA	NA	NA	NA	NA
AYO94024.1|550964_551696_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	27.4	3.1e-09
AYO94025.1|551836_552298_-	hypothetical protein	NA	NA	NA	NA	NA
AYO94026.1|552322_553945_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AYO94027.1|553941_554763_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AYO94028.1|554759_555533_-	hypothetical protein	NA	NA	NA	NA	NA
AYO94029.1|556949_557210_+	YcgL domain-containing protein	NA	NA	NA	NA	NA
AYO94030.1|557202_560523_+	hypothetical protein	NA	NA	NA	NA	NA
AYO94031.1|560911_562711_+	glycoside hydrolase family 15 protein	NA	NA	NA	NA	NA
AYO97241.1|568645_569748_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP031059	Xanthomonas axonopodis pv. commiphoreae strain LMG26789 chromosome, complete genome	4764247	1119588	1131388	4764247		Escherichia_phage(25.0%)	11	NA	NA
AYO94459.1|1119588_1120545_-	glycosyltransferase	NA	A0A192Y8W7	Salmonella_phage	27.4	1.8e-25
AYO94460.1|1120525_1121254_-	hypothetical protein	NA	NA	NA	NA	NA
AYO94461.1|1121417_1122362_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
AYO94462.1|1122361_1123108_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AYO94463.1|1123343_1124399_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	48.3	6.8e-82
AYO94464.1|1124454_1125342_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	58.5	1.6e-95
AYO94465.1|1125338_1125896_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	47.8	2.5e-43
AYO94466.1|1125892_1126795_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	2.2e-25
AYO94467.1|1127135_1128302_+	nucleotide sugar dehydrogenase	NA	M1HV26	Paramecium_bursaria_Chlorella_virus	57.6	4.7e-116
AYO94468.1|1128591_1129995_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.6	5.5e-47
AYO94469.1|1130041_1131388_-	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	27.1	5.7e-33
>prophage 3
CP031059	Xanthomonas axonopodis pv. commiphoreae strain LMG26789 chromosome, complete genome	4764247	3090284	3102283	4764247	tRNA	uncultured_Caudovirales_phage(16.67%)	7	NA	NA
AYO95864.1|3090284_3092243_-	PAS domain S-box protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	42.9	1.6e-12
AYO95865.1|3094785_3094998_-	carbon storage regulator	NA	J7I430	Pseudomonas_phage	76.5	1.3e-13
AYO95866.1|3095137_3097786_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.8	4.8e-84
AYO95867.1|3097887_3098376_-	regulatory protein RecX	NA	NA	NA	NA	NA
AYO95868.1|3098672_3099707_-	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	61.0	1.1e-113
AYO95869.1|3099879_3100521_-	transcriptional repressor LexA	NA	A0A1W6JNS2	Morganella_phage	40.2	2.4e-13
AYO95870.1|3100606_3102283_-	2-polyprenylphenol 6-hydroxylase	NA	G8DDN0	Micromonas_pusilla_virus	29.4	4.2e-41
>prophage 4
CP031059	Xanthomonas axonopodis pv. commiphoreae strain LMG26789 chromosome, complete genome	4764247	3695119	3766499	4764247	protease,transposase,integrase	Acinetobacter_phage(11.11%)	53	3763497:3763514	3768466:3768483
AYO96353.1|3695119_3696224_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
AYO96354.1|3696310_3696850_+	type I restriction endonuclease subunit S	NA	NA	NA	NA	NA
AYO96355.1|3696886_3698689_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
AYO96356.1|3699465_3700056_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AYO96357.1|3700127_3700841_+	oxidoreductase	NA	NA	NA	NA	NA
AYO96358.1|3701561_3704234_-	M1 family peptidase	NA	A0A0P0IY26	Acinetobacter_phage	28.6	2.5e-80
AYO96359.1|3704608_3705901_-	adenylosuccinate synthetase	NA	A0A2R8FF47	Brazilian_cedratvirus	38.4	5.8e-75
AYO96360.1|3706436_3706901_-|transposase	transposase	transposase	NA	NA	NA	NA
AYO96361.1|3707151_3708015_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AYO96362.1|3708014_3709142_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AYO96363.1|3709821_3710208_-	response regulator	NA	W8CYM9	Bacillus_phage	31.8	5.6e-10
AYO96364.1|3710704_3711604_-	J domain-containing protein	NA	A0A2L0UZR4	Agrobacterium_phage	27.7	3.5e-18
AYO96365.1|3712016_3712493_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
AYO96366.1|3712655_3713138_+	peroxiredoxin	NA	A0A1D8KSL1	Synechococcus_phage	38.9	5.4e-26
AYO96367.1|3713178_3713739_+	bacterioferritin	NA	NA	NA	NA	NA
AYO96368.1|3714087_3716508_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AYO96369.1|3716899_3717847_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	36.8	1.7e-07
AYO96370.1|3717991_3720994_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AYO96371.1|3721319_3726242_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AYO96372.1|3726738_3727743_-	nucleoside hydrolase	NA	NA	NA	NA	NA
AYO96373.1|3727819_3730036_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AYO96374.1|3730552_3731752_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA	NA
AYO96375.1|3731864_3732422_-	hypothetical protein	NA	NA	NA	NA	NA
AYO96376.1|3732431_3735026_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA	NA
AYO96377.1|3735185_3736340_-	2-methylcitrate synthase	NA	NA	NA	NA	NA
AYO96378.1|3736414_3737311_-	methylisocitrate lyase	NA	NA	NA	NA	NA
AYO97457.1|3737439_3739059_+	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA	NA
AYO96379.1|3739286_3739613_-	hypothetical protein	NA	NA	NA	NA	NA
AYO96380.1|3740195_3740378_-	hypothetical protein	NA	NA	NA	NA	NA
AYO96381.1|3740694_3741048_-	pilus assembly protein PilZ	NA	NA	NA	NA	NA
AYO96382.1|3741044_3742004_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AYO96383.1|3742000_3743074_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AYO96384.1|3743134_3744490_-	aminodeoxychorismate synthase component I	NA	NA	NA	NA	NA
AYO96385.1|3744655_3745891_-	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AYO96386.1|3746032_3746272_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	44.6	5.9e-10
AYO96387.1|3746476_3747220_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.7	6.2e-13
AYO96388.1|3747302_3748247_-	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA	NA
AYO96389.1|3748535_3748976_-	MEKHLA domain-containing protein	NA	NA	NA	NA	NA
AYO96390.1|3749223_3750201_-	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AYO96391.1|3750291_3750486_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AYO96392.1|3750583_3751093_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
AYO96393.1|3751204_3751780_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AYO96394.1|3753360_3755199_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
AYO96395.1|3755236_3756190_+	MoxR family ATPase	NA	NA	NA	NA	NA
AYO96396.1|3756194_3757151_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AYO96397.1|3757143_3759096_+	DUF3488 domain-containing protein	NA	NA	NA	NA	NA
AYO96398.1|3759092_3759626_+	hypothetical protein	NA	NA	NA	NA	NA
AYO96399.1|3759743_3760094_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
AYO96400.1|3760194_3760788_-	recombination protein RecR	NA	NA	NA	NA	NA
AYO96401.1|3760885_3761206_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AYO96402.1|3761212_3763285_-	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	41.0	1.8e-46
3763497:3763514	attL	TCCCCCTCTCTCCGCCAG	NA	NA	NA	NA
AYO96403.1|3763598_3765119_+|integrase	integrase	integrase	NA	NA	NA	NA
AYO96404.1|3765394_3766499_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
3768466:3768483	attR	TCCCCCTCTCTCCGCCAG	NA	NA	NA	NA
