The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033376	Enterococcus faecium strain Gr17 chromosome, complete genome	2588149	229367	332779	2588149	tail,terminase,holin,integrase,capsid,tRNA	Bacillus_phage(24.14%)	69	295378:295396	320757:320775
AYQ59347.1|229367_229673_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
AYQ59348.1|231140_232571_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
AYQ59349.1|232580_233636_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.4	1.1e-15
AYQ59350.1|233746_235120_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	D0R096	Streptococcus_phage	56.1	1.4e-140
AYQ59351.1|235122_235251_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
AYQ61102.1|239777_240203_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ59352.1|258151_258340_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ59353.1|259264_259843_-	response regulator	NA	NA	NA	NA	NA
AYQ59354.1|260116_261403_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYQ59355.1|261539_262409_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AYQ59356.1|264905_265304_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AYQ59357.1|266665_267334_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
AYQ59358.1|270875_271817_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
AYQ59359.1|271885_272617_+	serine/threonine protein phosphatase	NA	A0A127AVW0	Bacillus_phage	35.9	2.0e-32
AYQ59360.1|274959_275430_+	SprT family protein	NA	NA	NA	NA	NA
AYQ59361.1|276348_277683_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AYQ59362.1|281958_282795_+	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	30.5	1.0e-24
AYQ59363.1|282758_283388_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
AYQ59364.1|283439_283772_+	CsbD family protein	NA	NA	NA	NA	NA
AYQ59365.1|284085_284589_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
AYQ59366.1|284611_285985_+	Replication initiation and membrane attachment	NA	NA	NA	NA	NA
AYQ59367.1|285984_286911_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	41.3	5.1e-33
AYQ59368.1|287039_287480_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ59369.1|287622_288324_+|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	tRNA	NA	NA	NA	NA
AYQ59370.1|288320_289442_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AYQ59371.1|289455_290688_+	peptidase T	NA	NA	NA	NA	NA
AYQ59372.1|290818_291727_+	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA	NA
AYQ59373.1|291761_292034_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
AYQ59374.1|292044_293091_+	UPF0104 family protein	NA	NA	NA	NA	NA
AYQ59375.1|293340_295950_+	ATP-dependent chaperone ClpB	NA	A0A2I7SAX5	Vibrio_phage	35.0	1.6e-132
295378:295396	attL	GATGAAATCGAAAAAGCGC	NA	NA	NA	NA
AYQ59376.1|296099_296771_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ59377.1|296763_297258_-	nucleoside 2-deoxyribosyltransferase	NA	A0A1W6JK28	Lactococcus_phage	56.5	4.2e-42
AYQ59378.1|297277_298498_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYQ59379.1|298644_300480_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.4	5.8e-20
AYQ59380.1|300572_301709_-|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.6	1.0e-115
AYQ59381.1|301886_302873_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ59382.1|302995_303562_-	DUF5067 domain-containing protein	NA	NA	NA	NA	NA
AYQ59383.1|303626_304055_-	ImmA/IrrE family metallo-endopeptidase	NA	I3VYZ2	Thermoanaerobacterium_phage	31.4	1.3e-07
AYQ59384.1|304061_304454_-	XRE family transcriptional regulator	NA	O03970	Lactobacillus_phage	38.6	7.0e-16
AYQ59385.1|304592_304847_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYQ59386.1|305058_305604_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ61103.1|305609_305888_+	DNA-binding protein	NA	NA	NA	NA	NA
AYQ59387.1|305884_306070_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ59388.1|306206_307148_+	endonuclease	NA	D2IZK1	Enterococcus_phage	76.4	4.4e-141
AYQ59389.1|307239_308145_+	recombinase RecT	NA	D2IYT9	Enterococcus_phage	61.5	1.8e-99
AYQ59390.1|309445_309607_+	antitoxin	NA	NA	NA	NA	NA
AYQ59391.1|309603_309930_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ59392.1|309926_310130_+	toxin PIN	NA	NA	NA	NA	NA
AYQ59393.1|310126_310426_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ59394.1|311932_312157_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ59395.1|312187_312805_+|terminase	terminase small subunit	terminase	A0A2K9V3C4	Faecalibacterium_phage	44.2	7.1e-23
AYQ59396.1|316856_317426_+|capsid	capsid protein	capsid	S5MUG0	Brevibacillus_phage	33.1	3.0e-07
AYQ59397.1|318304_318553_+	Ig domain-containing protein	NA	A5GYM0	Lactococcus_phage	71.8	1.9e-19
AYQ59398.1|318982_319324_+|capsid	minor capsid protein	capsid	Q5YA67	Bacillus_phage	59.3	3.4e-35
AYQ59399.1|319323_319650_+|capsid	capsid protein	capsid	Q5YA66	Bacillus_phage	54.4	6.6e-28
AYQ59400.1|319649_320051_+|capsid	capsid protein	capsid	Q5YA65	Bacillus_phage	55.7	7.1e-40
AYQ59401.1|320047_320506_+|tail	phage tail protein	tail	Q5YA64	Bacillus_phage	48.3	3.2e-28
AYQ59402.1|320495_320843_+	fibronectin type III domain-containing protein	NA	D2J067	Enterococcus_phage	47.7	2.6e-22
320757:320775	attR	GATGAAATCGAAAAAGCGC	NA	NA	NA	NA
AYQ59403.1|320883_321333_+	hypothetical protein	NA	B3GW11	Streptococcus_phage	30.0	1.7e-10
AYQ59404.1|321341_321923_+	hypothetical protein	NA	Q5YA62	Bacillus_phage	49.2	2.5e-41
AYQ59405.1|321915_325398_+|tail	phage tail tape measure protein	tail	Q938K3	Temperate_phage	53.9	4.2e-11
AYQ59406.1|326243_327287_+	hypothetical protein	NA	Q9T1A5	Listeria_phage	53.7	4.8e-104
AYQ59407.1|327286_328333_+	hypothetical protein	NA	Q9T1A4	Listeria_phage	28.7	1.0e-21
AYQ59408.1|328332_330594_+	DUF2479 domain-containing protein	NA	A0A288TYH2	Enterococcus_phage	54.0	1.0e-98
AYQ59409.1|330612_331059_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ59410.1|331060_331198_+	XkdX family protein	NA	NA	NA	NA	NA
AYQ59411.1|331235_331529_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ59412.1|331551_331749_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	85.9	7.8e-24
AYQ59413.1|331759_332779_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	65.5	3.2e-60
>prophage 2
CP033376	Enterococcus faecium strain Gr17 chromosome, complete genome	2588149	1029338	1038071	2588149		Streptococcus_phage(71.43%)	11	NA	NA
AYQ59918.1|1029338_1029941_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.0	4.9e-53
AYQ59919.1|1029994_1031116_-	DNA polymerase IV	NA	D0R0A3	Streptococcus_phage	25.9	2.0e-15
AYQ59920.1|1031224_1032097_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.1	2.1e-89
AYQ59921.1|1032165_1032513_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
AYQ59922.1|1032505_1033330_-	signal peptidase	NA	NA	NA	NA	NA
AYQ59923.1|1033365_1034304_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.8	6.1e-34
AYQ59924.1|1034317_1034647_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ59925.1|1034661_1035306_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
AYQ59926.1|1035369_1035966_-	recombination protein RecR	NA	NA	NA	NA	NA
AYQ59927.1|1035990_1036305_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AYQ59928.1|1036325_1038071_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	36.1	2.1e-48
>prophage 3
CP033376	Enterococcus faecium strain Gr17 chromosome, complete genome	2588149	1261765	1280812	2588149	head,terminase,portal,integrase,transposase	Enterococcus_phage(37.5%)	30	1258732:1258750	1280902:1280920
1258732:1258750	attL	TACATCATACCGCCCATCA	NA	NA	NA	NA
AYQ60091.1|1261765_1261963_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.5	3.9e-23
AYQ60092.1|1262382_1263075_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60093.1|1263197_1264151_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	1.4e-33
AYQ60094.1|1264179_1265088_-|head	phage head morphogenesis protein	head	A0A1L2JXH2	Streptococcus_phage	58.8	1.1e-91
AYQ60095.1|1265092_1266592_-|portal	phage portal protein	portal	A0A097BY86	Enterococcus_phage	78.3	1.2e-220
AYQ60096.1|1266604_1267903_-|terminase	PBSX family phage terminase large subunit	terminase	A0A1B1UZZ1	Enterococcus_phage	88.4	4.9e-231
AYQ60097.1|1267895_1268351_-|terminase	terminase small subunit	terminase	D7RWC4	Brochothrix_phage	41.4	2.7e-19
AYQ60098.1|1268369_1268600_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60099.1|1268606_1268819_-	hypothetical protein	NA	D2IZF7	Enterococcus_phage	61.7	1.3e-08
AYQ60100.1|1269106_1269454_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60101.1|1269800_1270214_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	2.5e-56
AYQ60102.1|1270456_1270756_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60103.1|1270752_1271247_-	hypothetical protein	NA	A0A0D3MVS9	Staphylococcus_phage	57.0	3.2e-26
AYQ60104.1|1271243_1271546_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60105.1|1271548_1271710_-	antitoxin	NA	NA	NA	NA	NA
AYQ60106.1|1271706_1272009_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60107.1|1272171_1272441_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60108.1|1272452_1273199_-	helix-turn-helix domain-containing protein	NA	F8J194	Lactobacillus_virus	61.4	2.5e-30
AYQ60109.1|1273202_1273889_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	68.6	9.2e-88
AYQ60110.1|1273894_1274566_-	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
AYQ60111.1|1274558_1274900_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60112.1|1275222_1275411_-	hypothetical protein	NA	D2IZW5	Enterococcus_phage	56.9	3.7e-07
AYQ60113.1|1275431_1275716_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60114.1|1275763_1276063_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60115.1|1276075_1276831_-	phage antirepressor Ant	NA	A0A2D1GPQ2	Lactobacillus_phage	47.4	5.8e-59
AYQ60116.1|1276844_1277036_-	hypothetical protein	NA	NA	NA	NA	NA
AYQ60117.1|1277328_1277649_+	XRE family transcriptional regulator	NA	A0A182BQC8	Lactococcus_phage	49.1	2.1e-18
AYQ60118.1|1277666_1278098_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
AYQ60119.1|1278867_1279569_+	hypothetical protein	NA	NA	NA	NA	NA
AYQ60120.1|1279663_1280812_+|integrase	site-specific integrase	integrase	A0A1P8BMN3	Lactococcus_phage	48.7	1.6e-89
1280902:1280920	attR	TACATCATACCGCCCATCA	NA	NA	NA	NA
