The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	930466	937778	4783092	protease,integrase	Dickeya_phage(16.67%)	6	931717:931731	942896:942910
AYR68052.1|930466_931585_+	hypothetical protein	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
AYR68053.1|931581_933528_+	macrolide transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
931717:931731	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AYR68054.1|933657_933879_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AYR68055.1|934202_934523_+|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AYR68056.1|934553_936830_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.8e-164
AYR68057.1|937400_937778_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
942896:942910	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	1008903	1086215	4783092	protease,terminase,transposase,tail,integrase	Salmonella_phage(73.33%)	93	990982:991001	1061576:1061595
990982:991001	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYR68107.1|1008903_1010244_-|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	7.9e-261
AYR68108.1|1010240_1010489_-	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AYR68109.1|1010529_1010775_-	bacteriophage protein	NA	S4TR31	Salmonella_phage	96.2	1.3e-36
AYR68110.1|1010774_1011656_-	DNA methylase	NA	A0A0M4R347	Salmonella_phage	93.0	1.2e-153
AYR68111.1|1011652_1012717_-	bacteriophage protein	NA	T1SBJ4	Salmonella_phage	74.6	6.3e-152
AYR68112.1|1012794_1013475_-	exonuclease	NA	A0A0M3ULE0	Salmonella_phage	98.7	1.9e-130
AYR68113.1|1013471_1014257_-	bacteriophage recombination protein	NA	A0A0M4RD39	Salmonella_phage	99.6	9.7e-150
AYR68114.1|1014262_1014559_-	host-nuclease inhibitor protein	NA	A0A0M5M5Z9	Salmonella_phage	96.9	4.4e-47
AYR68115.1|1014649_1014850_-	prophage Kil protein	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
AYR68116.1|1015138_1015543_-	DNA-binding protein	NA	H6WRX4	Salmonella_phage	99.3	7.1e-72
AYR68117.1|1015874_1016249_+	DNA-binding protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
AYR68118.1|1016333_1017317_+	bacteriophage protein	NA	H6WRX7	Salmonella_phage	99.7	2.1e-162
AYR68119.1|1017319_1018069_+	DNA replication protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
AYR68120.1|1018079_1018427_+	DNA-binding protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
AYR68121.1|1018423_1018948_+	bacteriophage protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
AYR68122.1|1018947_1019421_+	methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
AYR68123.1|1019424_1019997_+	bacteriophage protein	NA	S4TSR6	Salmonella_phage	68.0	1.3e-66
AYR68124.1|1020090_1020357_+	bacteriophage protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AYR68125.1|1020438_1020600_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR68126.1|1021032_1021530_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR68127.1|1021714_1021954_+	damage-inducible protein	NA	H6WRY5	Salmonella_phage	100.0	3.9e-38
AYR68128.1|1021943_1022249_+	bacteriophage protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AYR68129.1|1022288_1022891_+	bacteriophage protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
AYR68130.1|1023099_1023711_+	bacteriophage lambda protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	2.5e-92
AYR68131.1|1023843_1024641_+	prophage antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
AYR68132.1|1025039_1025165_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR68133.1|1025300_1025750_-	lipoprotein	NA	NA	NA	NA	NA
AYR68134.1|1025966_1026356_+	prophage membrane protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
AYR68135.1|1026342_1026624_+	prophage membrane protein	NA	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AYR68136.1|1026623_1027238_+	bacteriophage protein	NA	Q8HA86	Salmonella_phage	93.1	3.2e-108
AYR68137.1|1027456_1027711_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68138.1|1027815_1028193_+	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	4.9e-43
AYR68139.1|1028256_1028517_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68140.1|1028606_1029359_+|terminase	prophage terminase small subunit	terminase	A0A0M3ULJ9	Salmonella_phage	56.5	3.4e-11
AYR68141.1|1029324_1030728_+	bacteriophage protein	NA	A0A077KAW0	Edwardsiella_phage	70.1	6.5e-189
AYR68142.1|1030727_1032197_+	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.7e-280
AYR68143.1|1032288_1032819_+	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	87.4	8.7e-86
AYR68144.1|1032833_1034066_+	hypothetical protein	NA	A0A0M4R5A6	Salmonella_phage	99.0	1.4e-227
AYR68145.1|1034070_1034568_+	bacteriophage protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
AYR68146.1|1034579_1035521_+	bacteriophage protein	NA	A0A0M3ULD3	Salmonella_phage	100.0	3.1e-179
AYR68147.1|1035562_1035931_+	bacteriophage protein	NA	A0A0M4RTX5	Salmonella_phage	100.0	8.7e-61
AYR68148.1|1035896_1036304_+	bacteriophage protein	NA	A0A0M5M3S2	Salmonella_phage	97.8	7.1e-72
AYR68149.1|1036300_1036855_+	bacteriophage protein	NA	A0A0M4S631	Salmonella_phage	100.0	4.8e-95
AYR68150.1|1036841_1037231_+	bacteriophage protein	NA	A0A0M3ULK0	Salmonella_phage	98.4	6.0e-68
AYR68151.1|1037205_1037769_+	bacteriophage protein	NA	A0A0M4R331	Salmonella_phage	75.3	8.9e-81
AYR68152.1|1037772_1038918_+	bacteriophage protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	2.2e-163
AYR68153.1|1038929_1039370_+	bacteriophage protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.7	3.5e-56
AYR68154.1|1039373_1039826_+	bacteriophage protein	NA	A0A0M4S6U8	Salmonella_phage	76.6	1.9e-57
AYR68155.1|1040003_1041956_+	bacteriophage protein	NA	A0A0M4REK7	Salmonella_phage	56.0	1.8e-181
AYR68156.1|1041955_1042606_+	bacteriophage protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.0e-56
AYR68157.1|1042609_1042912_+	bacteriophage protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AYR68158.1|1042914_1043946_+	bacteriophage protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.4	1.2e-96
AYR68159.1|1043942_1044278_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
AYR68160.1|1044472_1045204_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR68161.1|1045203_1045632_+	bacteriophage protein	NA	NA	NA	NA	NA
AYR68162.1|1045690_1046446_+	bacteriophage protein	NA	A0A0M5M1K7	Salmonella_phage	85.3	4.1e-105
AYR68163.1|1046533_1046671_+	bacteriophage protein	NA	A0A0M4S639	Salmonella_phage	100.0	2.0e-18
AYR68164.1|1046686_1047040_+	bacteriophage protein	NA	A0A0M4R339	Salmonella_phage	98.3	3.2e-60
AYR68165.1|1047040_1048240_+	bacteriophage protein	NA	A0A0M4RD32	Salmonella_phage	97.5	8.5e-214
AYR68166.1|1048236_1048917_+	bacteriophage protein	NA	A0A0M5M1K4	Salmonella_phage	98.7	6.9e-128
AYR68167.1|1048916_1050428_+|tail	bacteriophage tail protein	tail	S4TP62	Salmonella_phage	59.4	1.5e-111
AYR68168.1|1050442_1050961_+|tail	tail fiber protein	tail	A0A1B0VCD0	Salmonella_phage	62.8	1.7e-46
AYR68169.1|1051882_1052584_-	hypothetical protein	NA	NA	NA	NA	NA
AYR68170.1|1052896_1053175_-	hypothetical protein	NA	S4TNM0	Salmonella_phage	92.3	2.4e-26
AYR68171.1|1053600_1056213_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	1.1e-19
AYR68172.1|1056420_1057431_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AYR68173.1|1057593_1058139_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68174.1|1058135_1059245_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AYR68175.1|1059343_1061452_+	23S rRNA m(2)G2445 methyltransferase	NA	W6LLI2	Streptococcus_phage	29.6	5.1e-20
AYR68176.1|1061464_1063372_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
1061576:1061595	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
AYR68177.1|1063386_1064640_+	inner membrane protein	NA	NA	NA	NA	NA
AYR68178.1|1064644_1066285_+	paraquat-inducible protein B	NA	NA	NA	NA	NA
AYR68179.1|1066281_1066845_+	lipoprotein	NA	NA	NA	NA	NA
AYR68180.1|1067098_1067266_+	ribosome modulation factor	NA	NA	NA	NA	NA
AYR68181.1|1067365_1067884_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA	NA
AYR68182.1|1067952_1069713_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AYR68183.1|1069898_1070351_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA	NA
AYR68184.1|1070422_1071475_-	outer membrane protein A	NA	NA	NA	NA	NA
AYR68185.1|1071829_1072339_-	cell division inhibitor	NA	NA	NA	NA	NA
AYR68186.1|1072555_1073161_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA	NA
AYR68187.1|1073147_1075301_-	inner membrane protein	NA	NA	NA	NA	NA
AYR68188.1|1075319_1075766_-	hypothetical protein	NA	NA	NA	NA	NA
AYR68189.1|1075889_1077944_+	helicase IV	NA	A7KV33	Bacillus_phage	27.6	6.5e-20
AYR68190.1|1077979_1078438_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AYR68191.1|1078532_1079195_-	hypothetical protein	NA	NA	NA	NA	NA
AYR68192.1|1079365_1079782_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68193.1|1079826_1080144_-	heat shock protein HspQ	NA	NA	NA	NA	NA
AYR68194.1|1080201_1081413_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA	NA
AYR68195.1|1082544_1083003_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR68196.1|1083739_1084021_+	acylphosphatase	NA	NA	NA	NA	NA
AYR68197.1|1084017_1084347_-	sulfite reductase	NA	NA	NA	NA	NA
AYR68198.1|1084433_1085093_-	hypothetical protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AYR68199.1|1085756_1086215_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 3
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	1529033	1602603	4783092	protease,head,tRNA,transposase,tail,plate	Burkholderia_virus(42.11%)	81	NA	NA
AYR68598.1|1529033_1529492_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR68599.1|1529994_1530276_+	stress response protein	NA	NA	NA	NA	NA
AYR68600.1|1530544_1531366_+|protease	serine protease	protease	NA	NA	NA	NA
AYR68601.1|1531400_1531730_-	multidrug efflux system protein MdtI	NA	NA	NA	NA	NA
AYR68602.1|1531716_1532079_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA	NA
AYR68603.1|1532190_1532361_-	hypothetical protein	NA	NA	NA	NA	NA
AYR68604.1|1532495_1533530_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68605.1|1533704_1535093_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA	NA
AYR68606.1|1535103_1536633_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AYR68607.1|1537159_1538104_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68608.1|1538285_1538675_-	bacteriophage transcriptional regulator	NA	Q6QIE8	Burkholderia_phage	54.2	4.5e-31
AYR68609.1|1538646_1539099_-	hypothetical protein	NA	A4JWM5	Burkholderia_virus	46.6	1.2e-24
AYR68610.1|1539293_1539524_-	hypothetical protein	NA	NA	NA	NA	NA
AYR68611.1|1539520_1540204_-	hypothetical protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	37.3	2.6e-34
AYR68612.1|1540200_1540416_-	hypothetical protein	NA	NA	NA	NA	NA
AYR68613.1|1540408_1540792_-	hypothetical protein	NA	K7PJQ4	Enterobacteria_phage	58.9	2.3e-27
AYR68614.1|1540788_1541091_-	hypothetical protein	NA	NA	NA	NA	NA
AYR68615.1|1541100_1541373_-	hypothetical protein	NA	NA	NA	NA	NA
AYR68616.1|1541661_1542192_-	bacteriophage host-nuclease inhibitor protein	NA	L7P7T1	Pseudomonas_phage	66.1	3.4e-58
AYR68617.1|1542219_1542489_-	hypothetical protein	NA	NA	NA	NA	NA
AYR68618.1|1542491_1543658_-	ExeA protein	NA	A4JWN1	Burkholderia_virus	59.7	3.3e-122
AYR68619.1|1543668_1545438_-	hypothetical protein	NA	Q6QIE0	Burkholderia_phage	68.5	2.8e-229
AYR68620.1|1545615_1546047_-	hypothetical protein	NA	A4JWN3	Burkholderia_virus	57.3	4.5e-32
AYR68621.1|1546042_1546639_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68622.1|1546882_1547233_+	hypothetical protein	NA	A4JWP3	Burkholderia_virus	53.0	4.5e-22
AYR68623.1|1547947_1548598_+	lipoprotein	NA	Q5ZQY9	Pseudomonas_phage	32.9	8.1e-09
AYR68624.1|1548594_1548921_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
AYR68625.1|1548920_1549232_+	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.6	9.4e-32
AYR68626.1|1549231_1549777_+	hypothetical protein	NA	A4JWJ3	Burkholderia_virus	67.6	9.3e-59
AYR68627.1|1549773_1551369_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	62.6	9.3e-184
AYR68628.1|1551368_1552865_+	hypothetical protein	NA	A4JWJ5	Burkholderia_virus	59.6	8.0e-169
AYR68629.1|1552845_1553667_+|head	phage head morphogenesis protein	head	A4JWJ6	Burkholderia_virus	61.2	5.3e-98
AYR68630.1|1553669_1554128_+	bacteriophage protein	NA	Q6QIB8	Burkholderia_phage	44.8	1.5e-30
AYR68631.1|1554342_1555458_+	hypothetical protein	NA	A4JWJ9	Burkholderia_virus	51.1	7.9e-97
AYR68632.1|1555472_1556426_+	hypothetical protein	NA	A4JWK0	Burkholderia_virus	44.5	5.2e-65
AYR68633.1|1556435_1556774_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68634.1|1556775_1557222_+	hypothetical protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
AYR68635.1|1557221_1557686_+	hypothetical protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
AYR68636.1|1557682_1557937_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68637.1|1557926_1559354_+|tail	bacteriophage tail sheath protein	tail	A4JWK5	Burkholderia_virus	77.4	3.7e-216
AYR68638.1|1559353_1559875_+|tail	tail core protein	tail	A4JWK6	Burkholderia_virus	68.2	8.0e-68
AYR68639.1|1559877_1560159_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68640.1|1560256_1560592_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68641.1|1560767_1563233_+	bacteriophage protein	NA	A4JWL0	Burkholderia_virus	42.6	2.2e-168
AYR68642.1|1563232_1564117_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	47.0	7.5e-50
AYR68643.1|1564113_1564329_+|tail	bacteriophage tail fiber protein	tail	Q6QIA3	Burkholderia_phage	60.0	2.4e-18
AYR68644.1|1564316_1565471_+	bacteriophage regulatory protein	NA	Q6QIA2	Burkholderia_phage	47.1	4.7e-84
AYR68645.1|1565467_1565995_+|plate	bacteriophage baseplate protein	plate	Q6QIA1	Burkholderia_phage	46.5	1.5e-21
AYR68646.1|1566051_1566399_+|plate	bacteriophage baseplate protein	plate	Q6QIA0	Burkholderia_phage	60.6	8.6e-34
AYR68647.1|1566389_1567493_+|plate	bacteriophage baseplate assembly protein	plate	Q6QI99	Burkholderia_phage	54.3	5.4e-106
AYR68648.1|1567485_1568064_+|tail	bacteriophage tail fiber protein	tail	A4JWL7	Burkholderia_virus	65.8	6.4e-66
AYR68649.1|1568066_1569092_+|tail	bacteriophage tail fiber protein	tail	M1TAS6	Escherichia_phage	53.3	1.6e-64
AYR68650.1|1569605_1570223_+|tail	bacteriophage tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	59.9	5.8e-65
AYR68651.1|1570716_1571109_-	hypothetical protein	NA	Q9MCR6	Enterobacteria_phage	51.1	6.8e-19
AYR68652.1|1571705_1572278_+	DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	84.7	8.8e-84
AYR68653.1|1572558_1573941_+	amino acid permease	NA	NA	NA	NA	NA
AYR68654.1|1574002_1574338_-	hypothetical protein	NA	NA	NA	NA	NA
AYR68655.1|1574464_1575196_+	two-component response regulator	NA	NA	NA	NA	NA
AYR68656.1|1575676_1576828_+	outer membrane protein	NA	Q1MVN1	Enterobacteria_phage	59.1	3.2e-117
AYR68657.1|1576980_1578687_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AYR68658.1|1578794_1580099_+	two component sensor kinase	NA	W8CYF6	Bacillus_phage	22.7	5.7e-14
AYR68659.1|1580174_1581104_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA	NA
AYR68660.1|1581100_1582504_-	fumarate hydratase class II	NA	NA	NA	NA	NA
AYR68661.1|1582671_1584318_-	Fumarate hydratase class I	NA	NA	NA	NA	NA
AYR68662.1|1584517_1585693_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AYR68663.1|1585795_1587304_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68664.1|1588009_1589011_+	adenosine deaminase	NA	NA	NA	NA	NA
AYR68665.1|1589084_1590200_-	oxidoreductase	NA	NA	NA	NA	NA
AYR68666.1|1590302_1590458_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68667.1|1590756_1590972_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA	NA
AYR68668.1|1591060_1591501_+	hypothetical protein	NA	NA	NA	NA	NA
AYR68669.1|1591577_1592159_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA	NA
AYR68670.1|1592158_1592737_+	ferredoxin-like protein	NA	NA	NA	NA	NA
AYR68671.1|1592729_1594751_+	NADH reducing dehydrogenase	NA	NA	NA	NA	NA
AYR68672.1|1594751_1595810_+	electron transport complex protein RnfD	NA	NA	NA	NA	NA
AYR68673.1|1595813_1596434_+	electron transport complex protein RnfG	NA	NA	NA	NA	NA
AYR68674.1|1596436_1597129_+	electron transport complex protein RsxE	NA	NA	NA	NA	NA
AYR68675.1|1597128_1597764_+	endonuclease III	NA	NA	NA	NA	NA
AYR68676.1|1598364_1599870_+	proton/oligopeptide symporter	NA	NA	NA	NA	NA
AYR68677.1|1599974_1600580_+	glutathione S-transferase	NA	NA	NA	NA	NA
AYR68678.1|1601328_1602603_-|tRNA	tyrosyl-tRNA synthetase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 4
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	1783640	1788052	4783092		Escherichia_phage(50.0%)	6	NA	NA
AYR68862.1|1783640_1783880_+	virulence protein	NA	K7P6H1	Enterobacteria_phage	87.3	5.5e-32
AYR68863.1|1784752_1785562_+	toxin-like protein	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
AYR68864.1|1785634_1786012_+	hypothetical protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AYR68865.1|1786159_1786702_-	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AYR68866.1|1786893_1787622_-	pertussis toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	4.9e-63
AYR68867.1|1787638_1788052_-	pertussis-like toxin subunit	NA	A0A0U2KD34	Escherichia_phage	38.6	1.4e-19
>prophage 5
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	1991905	1999139	4783092		Morganella_phage(33.33%)	7	NA	NA
AYR69057.1|1991905_1993336_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
AYR69058.1|1993409_1994105_-	hypothetical protein	NA	S4W232	Pandoravirus	27.5	2.1e-07
AYR69059.1|1994184_1994496_-	hypothetical protein	NA	NA	NA	NA	NA
AYR69060.1|1995146_1996331_+	outer membrane protein S1	NA	Q1MVN1	Enterobacteria_phage	56.4	1.4e-107
AYR69061.1|1996790_1997003_-	cold shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	1.5e-20
AYR69062.1|1997448_1998717_-	DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.2	3.3e-224
AYR69063.1|1998719_1999139_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 6
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	2105439	2115946	4783092		Enterobacteria_phage(37.5%)	10	NA	NA
AYR69160.1|2105439_2106753_-	dehydratase RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
AYR69161.1|2106779_2107859_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.3e-16
AYR69162.1|2107863_2108637_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AYR69163.1|2108652_2109627_-	reductase RfbI	NA	NA	NA	NA	NA
AYR69164.1|2109632_2110184_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AYR69165.1|2110184_2111063_-	TDP-glucose pyrophosphorylase	NA	I7I009	Enterobacteria_phage	64.8	2.3e-107
AYR69166.1|2111110_2112010_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	7.9e-31
AYR69167.1|2112009_2113095_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AYR69168.1|2113471_2114365_-	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AYR69169.1|2114542_2115946_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	1.1e-21
>prophage 7
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	2191837	2201008	4783092	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AYR69228.1|2191837_2193871_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
AYR69229.1|2194111_2194570_+	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AYR69230.1|2194741_2195272_+	lipoprotein	NA	NA	NA	NA	NA
AYR69231.1|2195328_2195796_-	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AYR69232.1|2195842_2196562_-	two-component system response regulator	NA	NA	NA	NA	NA
AYR69233.1|2196558_2198244_-	two-component system sensor kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.1e-278
AYR69234.1|2198466_2199198_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AYR69235.1|2199257_2199365_+	hypothetical protein	NA	NA	NA	NA	NA
AYR69236.1|2199345_2200077_-	ABC transporter permease	NA	NA	NA	NA	NA
AYR69237.1|2200060_2201008_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 8
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	2736468	2749860	4783092	tail	Salmonella_phage(70.0%)	11	NA	NA
AYR69666.1|2736468_2736687_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	71.9	1.9e-18
AYR69667.1|2736777_2737878_-	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYR69668.1|2737874_2738360_-|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYR69669.1|2738356_2741434_-|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYR69670.1|2741426_2741546_-	bacteriophage protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYR69671.1|2741560_2741863_-|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYR69672.1|2741917_2742433_-|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYR69673.1|2742442_2743615_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYR69674.1|2743757_2744330_-	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYR69675.1|2745007_2746123_+	glycosyltransferase	NA	NA	NA	NA	NA
AYR69676.1|2746203_2749860_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.6	1.0e-44
>prophage 9
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	3067299	3111002	4783092	tRNA,transposase,bacteriocin,protease	Bacillus_virus(33.33%)	44	NA	NA
AYR69963.1|3067299_3067758_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR69964.1|3067947_3069027_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA	NA
AYR69965.1|3069128_3070292_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
AYR69966.1|3070313_3071360_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA	NA
AYR69967.1|3071733_3072159_+	hypothetical protein	NA	NA	NA	NA	NA
AYR69968.1|3072184_3072763_+	hypothetical protein	NA	NA	NA	NA	NA
AYR69969.1|3072796_3073471_+	hypothetical protein	NA	NA	NA	NA	NA
AYR69970.1|3073452_3074136_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AYR69971.1|3074129_3074786_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-09
AYR69972.1|3074890_3075349_-|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR69973.1|3075537_3077529_-	transketolase	NA	NA	NA	NA	NA
AYR69974.1|3077804_3078563_+|protease	metalloprotease	protease	NA	NA	NA	NA
AYR69975.1|3078663_3079584_-	agmatine ureohydrolase	NA	NA	NA	NA	NA
AYR69976.1|3079811_3081788_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
AYR69977.1|3081796_3081928_-	hypothetical protein	NA	NA	NA	NA	NA
AYR69978.1|3082222_3082522_-	membrane protein	NA	NA	NA	NA	NA
AYR69979.1|3082577_3083732_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
AYR69980.1|3084224_3085619_+	galactose-proton symport	NA	NA	NA	NA	NA
AYR69981.1|3085697_3086195_+	hypothetical protein	NA	NA	NA	NA	NA
AYR69982.1|3086290_3086998_+	endonuclease I	NA	NA	NA	NA	NA
AYR69983.1|3087074_3087806_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AYR69984.1|3087825_3088773_+	glutathione synthetase	NA	NA	NA	NA	NA
AYR69985.1|3088988_3089552_+	hypothetical protein	NA	NA	NA	NA	NA
AYR69986.1|3089551_3089968_+	Holliday junction resolvase	NA	NA	NA	NA	NA
AYR69987.1|3090014_3090701_-	global regulatory protein	NA	NA	NA	NA	NA
AYR69988.1|3090830_3091811_-	type II secretion system ATP-binding protein	NA	NA	NA	NA	NA
AYR69989.1|3091828_3092533_+	hypothetical protein	NA	NA	NA	NA	NA
AYR69990.1|3092551_3093118_+	hypothetical protein	NA	NA	NA	NA	NA
AYR69991.1|3093114_3093405_+	hypothetical protein	NA	NA	NA	NA	NA
AYR69992.1|3093412_3094006_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA	NA
AYR69993.1|3093998_3095135_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
AYR69994.1|3095225_3096233_-	hypothetical protein	NA	NA	NA	NA	NA
AYR69995.1|3096365_3097412_-	L-asparaginase	NA	NA	NA	NA	NA
AYR69996.1|3097730_3098189_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
AYR69997.1|3098311_3099031_-	hypothetical protein	NA	NA	NA	NA	NA
AYR69998.1|3099080_3099407_-	hypothetical protein	NA	NA	NA	NA	NA
AYR69999.1|3099406_3100126_-|tRNA	tRNA m(7)G46 methyltransferase	tRNA	NA	NA	NA	NA
AYR70000.1|3100280_3101333_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AYR70001.1|3101360_3101636_+	oxidative damage protection protein	NA	NA	NA	NA	NA
AYR70002.1|3101748_3102834_+	membrane-bound lytic murein transglycosylase C	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
AYR70003.1|3103050_3104307_+	nucleoside permease	NA	NA	NA	NA	NA
AYR70004.1|3106917_3107625_+	hypothetical protein	NA	NA	NA	NA	NA
AYR70005.1|3110214_3110481_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYR70006.1|3110723_3111002_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 10
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	3489097	3527155	4783092	capsid,portal,terminase,transposase,tail,plate,integrase	Salmonella_phage(82.05%)	46	3484061:3484075	3496227:3496241
3484061:3484075	attL	CGAATTTCTTTTTCA	NA	NA	NA	NA
AYR70335.1|3489097_3490744_-	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	9.0e-65
AYR70336.1|3490883_3490982_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA	NA
AYR70337.1|3491237_3491567_+	hypothetical protein	NA	NA	NA	NA	NA
AYR70338.1|3491607_3492660_-|integrase	bacteriophage integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
AYR70339.1|3493055_3493625_-	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.4	2.5e-38
AYR70340.1|3493750_3493972_+	hypothetical protein	NA	NA	NA	NA	NA
AYR70341.1|3494004_3494514_+	regulatory protein cII	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
AYR70342.1|3494688_3494913_+	hypothetical protein	NA	NA	NA	NA	NA
AYR70343.1|3494935_3495277_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
AYR70344.1|3495344_3495578_+	hypothetical protein	NA	E5G6L6	Salmonella_phage	94.8	2.0e-31
AYR70345.1|3495577_3495805_+	hypothetical protein	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
AYR70346.1|3495801_3496659_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.2	3.5e-161
3496227:3496241	attR	TGAAAAAGAAATTCG	NA	NA	NA	NA
AYR70347.1|3496655_3499070_+	endonuclease	NA	E5G6L9	Salmonella_phage	97.5	0.0e+00
AYR70348.1|3499223_3499412_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	95.2	7.9e-26
AYR70349.1|3501379_3502294_+	hypothetical protein	NA	NA	NA	NA	NA
AYR70350.1|3502290_3503031_+	hypothetical protein	NA	NA	NA	NA	NA
AYR70351.1|3503065_3504103_-|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	89.5	1.3e-173
AYR70352.1|3504102_3505869_-|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
AYR70353.1|3506011_3506845_+|capsid	capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.6	1.5e-121
AYR70354.1|3506861_3507920_+|capsid	major capsid protein	capsid	E5G6M6	Salmonella_phage	93.1	1.4e-180
AYR70355.1|3507923_3508574_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	96.3	8.7e-112
AYR70356.1|3508606_3509134_+|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.0	2.1e-76
AYR70357.1|3509133_3509337_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
AYR70358.1|3509340_3509556_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
AYR70359.1|3509575_3510049_+	lysozyme	NA	E5G6N1	Salmonella_phage	91.0	3.7e-80
AYR70360.1|3510050_3510428_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	40.0	2.3e-16
AYR70361.1|3510424_3510853_+	regulatory protein	NA	E5G6N2	Salmonella_phage	77.3	2.2e-47
AYR70362.1|3510948_3511380_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	95.1	1.5e-72
AYR70363.1|3511372_3511819_+|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	85.6	6.6e-63
AYR70364.1|3511887_3512466_+|plate	phage baseplate assembly protein	plate	A0A1S6KZX7	Salmonella_phage	86.5	5.5e-94
AYR70365.1|3512462_3512822_+|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	84.9	6.1e-51
AYR70366.1|3512808_3513717_+|plate	phage baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	89.7	1.3e-142
AYR70367.1|3513709_3514315_+|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYR70368.1|3514311_3515826_+|tail	variable tail fiber protein	tail	M1TAS6	Escherichia_phage	73.2	6.8e-200
AYR70369.1|3515825_3516419_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	64.3	9.2e-60
AYR70370.1|3516390_3516831_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.0	3.1e-52
AYR70371.1|3517253_3517826_+	DNA-invertase	NA	A0A0F7LA37	Escherichia_phage	86.3	1.4e-86
AYR70372.1|3517968_3519141_+|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	3.5e-204
AYR70373.1|3519150_3519666_+|tail	major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
AYR70374.1|3519720_3520023_+|tail	phage tail protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	7.0e-40
AYR70375.1|3520037_3520157_+	hypothetical protein	NA	E5G6Q0	Salmonella_phage	87.2	2.8e-13
AYR70376.1|3520149_3523227_+|tail	bacteriophage tail protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
AYR70377.1|3523223_3523709_+|tail	bacteriophage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	2.4e-66
AYR70378.1|3523705_3524806_+	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	1.0e-176
AYR70379.1|3524896_3525115_+	hypothetical protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
AYR70380.1|3526696_3527155_+|transposase	insertion sequence element IS200 transposase	transposase	NA	NA	NA	NA
>prophage 11
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	4442850	4517014	4783092	capsid,portal,terminase,tail,plate,integrase	Salmonella_phage(82.98%)	76	4504351:4504367	4517173:4517189
AYR71151.1|4442850_4444800_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	38.3	5.9e-31
AYR71152.1|4444871_4445780_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71153.1|4445853_4446753_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71154.1|4446794_4447154_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71155.1|4447253_4447523_-	hypothetical protein	NA	NA	NA	NA	NA
AYR71156.1|4447654_4448929_-	UV protection protein	NA	F1C5A5	Cronobacter_phage	62.0	7.5e-152
AYR71157.1|4449148_4449526_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71158.1|4449612_4449831_-	hypothetical protein	NA	E5G6Q4	Salmonella_phage	75.0	4.9e-27
AYR71159.1|4449898_4450999_-	hypothetical protein	NA	E5G6Q3	Salmonella_phage	92.1	7.9e-190
AYR71160.1|4450995_4451481_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	93.2	9.4e-71
AYR71161.1|4451480_4454261_-	hypothetical protein	NA	A0A2H4JGB2	uncultured_Caudovirales_phage	41.1	3.5e-125
AYR71162.1|4454253_4454373_-	hypothetical protein	NA	E5G6Q0	Salmonella_phage	94.9	1.2e-14
AYR71163.1|4454387_4454690_-|tail	phage tail protein	tail	E5G6P9	Salmonella_phage	93.9	3.3e-42
AYR71164.1|4454744_4455260_-|tail	major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
AYR71165.1|4455269_4456442_-|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	9.8e-223
AYR71166.1|4456976_4457699_+	invasion-associated secreted protein	NA	NA	NA	NA	NA
AYR71167.1|4457896_4458304_-|tail	phage tail fiber protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
AYR71168.1|4458310_4459930_-|tail	phage tail fiber protein	tail	E5G6P0	Salmonella_phage	90.9	2.7e-154
AYR71169.1|4459926_4460532_-|tail	phage tail protein	tail	A0A1S6L000	Salmonella_phage	92.0	2.0e-110
AYR71170.1|4460524_4461433_-|plate	phage baseplate assembly protein	plate	E5G6N8	Salmonella_phage	96.7	4.4e-154
AYR71171.1|4461419_4461779_-|plate	phage baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	96.6	6.8e-58
AYR71172.1|4461775_4462354_-|plate	phage baseplate assembly protein	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
AYR71173.1|4462422_4462869_-|tail	phage tail protein	tail	A0A1S6L001	Salmonella_phage	90.4	2.2e-66
AYR71174.1|4462861_4463293_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	98.6	2.5e-75
AYR71175.1|4463388_4463814_-	regulatory protein	NA	A0A1S6KZX8	Salmonella_phage	97.9	2.5e-67
AYR71176.1|4463813_4464191_-	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	99.2	1.5e-60
AYR71177.1|4464195_4464666_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.4	1.0e-85
AYR71178.1|4464685_4464901_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	98.6	3.8e-32
AYR71179.1|4464904_4465108_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
AYR71180.1|4465107_4465572_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	98.1	2.4e-84
AYR71181.1|4465665_4466316_-|terminase	phage terminase	terminase	E5G6M7	Salmonella_phage	99.5	2.4e-114
AYR71182.1|4466319_4467384_-|capsid	major capsid protein	capsid	A0A1S6KZZ3	Salmonella_phage	98.3	1.3e-194
AYR71183.1|4467400_4468234_-|capsid	capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	87.4	6.1e-126
AYR71184.1|4468376_4470143_+|terminase	terminase subunit	terminase	A0A1S6KZW3	Salmonella_phage	96.4	0.0e+00
AYR71185.1|4470139_4471186_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	86.6	2.1e-176
AYR71186.1|4471234_4471930_-	hypothetical protein	NA	NA	NA	NA	NA
AYR71187.1|4471949_4473014_-	hypothetical protein	NA	NA	NA	NA	NA
AYR71188.1|4473010_4474075_-	hypothetical protein	NA	NA	NA	NA	NA
AYR71189.1|4474999_4475329_-	hypothetical protein	NA	A0A1S6L028	Salmonella_phage	90.8	6.2e-50
AYR71190.1|4475325_4477395_-	bacteriophage replication protein A	NA	A0A1S6L028	Salmonella_phage	95.9	0.0e+00
AYR71191.1|4477385_4478246_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	81.8	3.4e-132
AYR71192.1|4478242_4478827_-	exonuclease	NA	A0A1S6L012	Salmonella_phage	73.7	1.1e-76
AYR71193.1|4478823_4479051_-	hypothetical protein	NA	A0A1S6L007	Salmonella_phage	94.7	1.0e-35
AYR71194.1|4479050_4479284_-	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	84.4	9.8e-26
AYR71195.1|4479351_4479693_-	hypothetical protein	NA	A0A1S6L019	Salmonella_phage	99.1	4.6e-56
AYR71196.1|4479656_4479857_-	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	97.0	4.6e-32
AYR71197.1|4479864_4480374_-	phage regulatory protein	NA	A0A1S6L008	Salmonella_phage	94.1	1.3e-83
AYR71198.1|4480406_4480649_-	phage regulatory protein	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
AYR71199.1|4480765_4481398_+	phage repressor protein cI	NA	A0A1S6KZZ7	Salmonella_phage	58.6	1.4e-66
AYR71200.1|4481401_4482427_+|integrase	phage integrase	integrase	A0A1S6L016	Salmonella_phage	98.2	2.7e-200
AYR71201.1|4482533_4482887_-	protein samA'	NA	I6S1S3	Salmonella_phage	59.3	6.7e-10
AYR71202.1|4483503_4483791_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71203.1|4483801_4484692_+	methyltransferase	NA	NA	NA	NA	NA
AYR71204.1|4484691_4485438_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71205.1|4485739_4487710_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYR71206.1|4487729_4489034_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYR71207.1|4489056_4489752_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA	NA
AYR71208.1|4489777_4490572_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA	NA
AYR71209.1|4490581_4491649_-	Vi polysaccharide exporter protein	NA	NA	NA	NA	NA
AYR71210.1|4491693_4493430_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AYR71211.1|4493429_4495925_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYR71212.1|4495948_4496995_-	Vi polysaccharide biosynthesis epimerase	NA	A0A2K9L0I7	Tupanvirus	45.0	1.4e-74
AYR71213.1|4496997_4498275_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	NA	M1HYW7	Paramecium_bursaria_Chlorella_virus	26.7	1.3e-21
AYR71214.1|4498519_4499059_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AYR71215.1|4499912_4501424_+	DNA helicase	NA	A0A126DN25	Acinetobacter_phage	29.0	2.0e-42
AYR71216.1|4501407_4502997_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71217.1|4503160_4504174_+|integrase	phage integrase	integrase	NA	NA	NA	NA
4504351:4504367	attL	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
AYR71218.1|4504600_4504894_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71219.1|4504890_4505379_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71220.1|4505558_4506011_-	hypothetical protein	NA	NA	NA	NA	NA
AYR71221.1|4511233_4511695_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71222.1|4511691_4511913_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	58.3	4.6e-17
AYR71223.1|4512769_4513552_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71224.1|4514178_4514403_-	hypothetical protein	NA	NA	NA	NA	NA
AYR71225.1|4514532_4515444_-	hypothetical protein	NA	NA	NA	NA	NA
AYR71226.1|4515754_4517014_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	41.7	3.2e-78
4517173:4517189	attR	GTGGTGCCCGGACTCGG	NA	NA	NA	NA
>prophage 12
CP029932	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208103 chromosome, complete genome	4783092	4659266	4669525	4783092	capsid	Enterobacteria_phage(77.78%)	13	NA	NA
AYR71363.1|4659266_4660343_-	protein kinase	NA	A0A2H4UU60	Bodo_saltans_virus	28.2	7.8e-17
AYR71364.1|4660339_4661413_-	protein kinase	NA	G9BWE0	Planktothrix_phage	44.7	6.5e-56
AYR71365.1|4661387_4662551_-	hypothetical protein	NA	NA	NA	NA	NA
AYR71366.1|4662826_4663393_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.9	1.8e-60
AYR71367.1|4663408_4663648_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
AYR71368.1|4663651_4664512_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
AYR71369.1|4664934_4665258_+	phage DNA binding protein	NA	Q7M299	Enterobacteria_phage	70.0	3.6e-26
AYR71370.1|4665241_4665742_+	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	70.4	9.8e-31
AYR71371.1|4665738_4665966_+	hypothetical protein	NA	NA	NA	NA	NA
AYR71372.1|4665962_4666283_+	P4 phage protein	NA	NA	NA	NA	NA
AYR71373.1|4666297_4666972_+	bacteriophage P4 DNA primase	NA	Q7M2A8	Enterobacteria_phage	75.1	1.4e-85
AYR71374.1|4666968_4668630_+	hypothetical protein	NA	Q7M2A8	Enterobacteria_phage	90.2	1.9e-296
AYR71375.1|4669366_4669525_+	recombinase	NA	Q7M297	Enterobacteria_phage	57.4	3.9e-10
