The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033515	Vibrio cholerae strain E4 chromosome 1, complete sequence	3075249	654314	660931	3075249		Staphylococcus_phage(66.67%)	7	NA	NA
AYV09249.1|654314_655448_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
AYV09250.1|655456_656710_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
AYV09251.1|656809_657259_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AYV09252.1|657284_658388_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
AYV09253.1|658392_659046_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
AYV09254.1|659086_660196_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
AYV09255.1|660460_660931_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
CP033515	Vibrio cholerae strain E4 chromosome 1, complete sequence	3075249	1509532	1544866	3075249		Vibrio_phage(34.62%)	34	NA	NA
AYV10000.1|1509532_1509700_+	helicase	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
AYV10001.1|1509692_1509860_+	hypothetical protein	NA	NA	NA	NA	NA
AYV10002.1|1510306_1510471_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AYV10003.1|1510898_1511465_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYV10004.1|1511626_1513195_+	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
AYV10005.1|1513199_1513484_+	hypothetical protein	NA	NA	NA	NA	NA
AYV10006.1|1513613_1514306_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYV10007.1|1514383_1514551_+	helicase	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
AYV10008.1|1514543_1515128_+	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
AYV10009.1|1515124_1515277_-	lipoate--protein ligase	NA	B1B6U1	Vibrio_virus	98.0	2.0e-19
AYV10010.1|1515617_1515956_-	XRE family transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
AYV10011.1|1516081_1517161_+	replication initiation factor family protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
AYV10012.1|1517138_1517513_+	hypothetical protein	NA	B9V3G5	Vibrio_virus	100.0	1.2e-68
AYV10013.1|1517606_1517831_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
AYV10014.1|1517849_1518002_-	lipoate--protein ligase	NA	B1B6U1	Vibrio_virus	100.0	4.0e-20
AYV10015.1|1518342_1518681_-	XRE family transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
AYV10016.1|1518806_1519886_+	replication initiation factor family protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
AYV10017.1|1519863_1520238_+	hypothetical protein	NA	B9V3G5	Vibrio_virus	100.0	1.2e-68
AYV10018.1|1520331_1520556_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
AYV10019.1|1520574_1520727_-	lipoate--protein ligase	NA	B1B6U1	Vibrio_virus	100.0	4.0e-20
AYV10020.1|1521067_1521406_-	XRE family transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
AYV10021.1|1521531_1522611_+	replication initiation factor family protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
AYV10022.1|1522588_1522972_+	hypothetical protein	NA	F1CC65	Vibrio_virus	100.0	4.8e-70
AYV10023.1|1522916_1523114_+	hypothetical protein	NA	NA	NA	NA	NA
AYV10024.1|1523106_1523355_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
AYV10025.1|1523365_1524649_+	hypothetical protein	NA	A0A142I701	Vibrio_phage	100.0	9.1e-222
AYV10026.1|1524645_1524939_+	DUF2523 domain-containing protein	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
AYV10027.1|1524935_1526135_+	Zona occludens toxin	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
AYV10028.1|1526233_1527010_+	enterotoxin	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
AYV10029.1|1527006_1527381_+	cholera enterotoxin subunit B	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
AYV10030.1|1527838_1541515_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
AYV10031.1|1541499_1541961_-	toxin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
AYV10032.1|1541986_1542346_-	peptide chain release factor 1	NA	NA	NA	NA	NA
AYV10033.1|1542703_1544866_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	27.1	5.0e-39
>prophage 3
CP033515	Vibrio cholerae strain E4 chromosome 1, complete sequence	3075249	2284549	2291742	3075249		Anguillid_herpesvirus(16.67%)	9	NA	NA
AYV10668.1|2284549_2284978_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
AYV10669.1|2285181_2286471_-	peptidase B	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
AYV10670.1|2286690_2286885_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AYV10671.1|2286933_2287272_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AYV10672.1|2287285_2289136_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
AYV10673.1|2289159_2289675_-	co-chaperone HscB	NA	NA	NA	NA	NA
AYV10674.1|2289723_2290047_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
AYV10675.1|2290107_2290491_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
AYV10676.1|2290527_2291742_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 4
CP033515	Vibrio cholerae strain E4 chromosome 1, complete sequence	3075249	2418904	2478314	3075249	transposase,protease	uncultured_virus(37.5%)	49	NA	NA
AYV11378.1|2418904_2420404_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
AYV10787.1|2420393_2421149_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	36.9	5.5e-33
AYV11379.1|2421279_2422845_+	ATPase	NA	NA	NA	NA	NA
AYV10788.1|2422935_2426628_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
AYV10789.1|2426630_2427659_-	conjugal transfer protein TraU	NA	NA	NA	NA	NA
AYV10790.1|2427642_2428767_-	pilus assembly protein	NA	NA	NA	NA	NA
AYV11380.1|2428777_2429197_-	S26 family signal peptidase	NA	NA	NA	NA	NA
AYV10791.1|2429273_2429621_-	plasmid-related protein	NA	NA	NA	NA	NA
AYV10792.1|2429613_2432013_-	type IV secretion system protein TraC	NA	NA	NA	NA	NA
AYV10793.1|2432012_2432705_-	DsbC family protein	NA	NA	NA	NA	NA
AYV10794.1|2432836_2433775_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
AYV11381.1|2433767_2434559_-	hypothetical protein	NA	NA	NA	NA	NA
AYV10795.1|2434779_2435166_-	hypothetical protein	NA	NA	NA	NA	NA
AYV10796.1|2435162_2435813_-	conjugal transfer protein TraV	NA	NA	NA	NA	NA
AYV10797.1|2435809_2437099_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
AYV11382.1|2437101_2437998_-	hypothetical protein	NA	NA	NA	NA	NA
AYV10798.1|2437981_2438608_-	pilus assembly protein	NA	NA	NA	NA	NA
AYV10799.1|2438604_2438886_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
AYV10800.1|2438921_2439161_+	hypothetical protein	NA	NA	NA	NA	NA
AYV10801.1|2439174_2439762_+	plasmid-related protein	NA	NA	NA	NA	NA
AYV10802.1|2439788_2440424_-	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
AYV10803.1|2440410_2440971_-	conjugative transfer protein	NA	NA	NA	NA	NA
AYV10804.1|2440980_2442801_-	conjugal transfer protein	NA	NA	NA	NA	NA
AYV10805.1|2442849_2445000_-	phosphohydrolase	NA	NA	NA	NA	NA
AYV10806.1|2445121_2445937_-	abortive phage resistance protein	NA	NA	NA	NA	NA
AYV10807.1|2445971_2446742_-	hypothetical protein	NA	NA	NA	NA	NA
AYV10808.1|2446768_2448820_-|protease	protease Lon-related BREX system protein BrxL	protease	NA	NA	NA	NA
AYV10809.1|2448858_2451162_-	PglZ domain-containing protein	NA	NA	NA	NA	NA
AYV10810.1|2451174_2454915_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA	NA
AYV10811.1|2454919_2458609_-	BREX system P-loop protein BrxC	NA	NA	NA	NA	NA
AYV10812.1|2458621_2459170_-	hypothetical protein	NA	NA	NA	NA	NA
AYV10813.1|2459153_2459954_-	DUF1819 family protein	NA	NA	NA	NA	NA
AYV10814.1|2459971_2460892_-	WYL domain-containing protein	NA	NA	NA	NA	NA
AYV10815.1|2461209_2461509_-	hypothetical protein	NA	NA	NA	NA	NA
AYV10816.1|2461596_2462502_-	DNA polymerase III subunit epsilon	NA	A0A2H4P6W5	Pseudomonas_phage	26.4	3.1e-06
AYV10817.1|2462885_2463143_-	hypothetical protein	NA	NA	NA	NA	NA
AYV10818.1|2463141_2463591_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	57.1	4.1e-36
AYV10819.1|2463598_2463868_+	hypothetical protein	NA	A0A218MNF2	uncultured_virus	76.3	9.3e-28
AYV10820.1|2464581_2465793_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	51.4	4.2e-51
AYV10821.1|2467607_2468423_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
AYV10822.1|2468483_2469287_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	Q75ZG1	Hepacivirus	34.3	3.8e-24
AYV10823.1|2469286_2470123_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
AYV10824.1|2470094_2470634_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AYV10825.1|2470745_2471051_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYV10826.1|2471078_2472293_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	4.2e-19
AYV10827.1|2472509_2473394_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
AYV10828.1|2473424_2474918_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AYV10829.1|2475029_2475221_-	hypothetical protein	NA	A0A2I7RTF0	Vibrio_phage	50.0	1.8e-09
AYV10830.1|2475335_2478314_-|transposase	Tn3 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP033515	Vibrio cholerae strain E4 chromosome 1, complete sequence	3075249	2621201	2628464	3075249		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
AYV10951.1|2621201_2622089_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
AYV10952.1|2622356_2624945_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
AYV10953.1|2625037_2626045_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
AYV10954.1|2626118_2627054_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
AYV10955.1|2627053_2627680_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
AYV10956.1|2627672_2628464_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	8.4e-69
>prophage 1
CP033514	Vibrio cholerae strain E4 plasmid pVCR94, complete sequence	171829	116310	149560	171829	transposase	Escherichia_phage(50.0%)	36	NA	NA
AYV08595.1|116310_117015_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYV08596.1|117154_117376_-	hypothetical protein	NA	NA	NA	NA	NA
AYV08597.1|117372_117651_-	resolvase	NA	NA	NA	NA	NA
AYV08664.1|117676_117862_+	hypothetical protein	NA	NA	NA	NA	NA
AYV08598.1|117858_118197_-	hypothetical protein	NA	NA	NA	NA	NA
AYV08599.1|118100_119291_-	tetracycline efflux MFS transporter Tet(C)	NA	NA	NA	NA	NA
AYV08600.1|119383_120043_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AYV08601.1|120641_121346_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYV08602.1|122055_122541_-	hypothetical protein	NA	NA	NA	NA	NA
AYV08603.1|122565_123051_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AYV08604.1|123037_123733_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	7.5e-29
AYV08605.1|123737_124868_-	ABC transporter permease	NA	NA	NA	NA	NA
AYV08606.1|124857_126141_-	ABC transporter permease	NA	NA	NA	NA	NA
AYV08607.1|126143_127523_-	DUF2318 domain-containing protein	NA	NA	NA	NA	NA
AYV08608.1|127626_128154_-	iron transporter	NA	NA	NA	NA	NA
AYV08609.1|128194_130081_-	FTR1 family iron permease	NA	NA	NA	NA	NA
AYV08610.1|130083_130269_-	hypothetical protein	NA	NA	NA	NA	NA
AYV08611.1|130427_131243_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA	NA
AYV08612.1|131425_131932_-	protein disulfide oxidoreductase	NA	NA	NA	NA	NA
AYV08613.1|131921_132080_-	scsC protein	NA	NA	NA	NA	NA
AYV08614.1|132101_132284_+	hypothetical protein	NA	NA	NA	NA	NA
AYV08615.1|134856_135525_+	putative tetracyline resistance transcriptional regulator TetC	NA	NA	NA	NA	NA
AYV08616.1|135637_136843_-	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA	NA
AYV08617.1|136921_137548_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AYV08618.1|137525_138212_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYV08619.1|138219_138579_-	amino acid-binding protein	NA	NA	NA	NA	NA
AYV08620.1|138623_139604_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	1.8e-185
AYV08621.1|139798_140062_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AYV08622.1|140789_140981_-	hypothetical protein	NA	NA	NA	NA	NA
AYV08623.1|141034_141694_+	type A-1 chloramphenicol O-acetyltransferase	NA	G3CFL0	Escherichia_phage	100.0	8.4e-131
AYV08624.1|141894_142272_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYV08625.1|142338_145305_-|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.6	0.0e+00
AYV08626.1|145307_145868_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
AYV08627.1|146133_146838_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYV08665.1|146873_147401_+	recombinase family protein	NA	E5FFF9	Burkholderia_phage	45.0	9.7e-29
AYV08628.1|148477_149560_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	31.8	5.5e-10
>prophage 2
CP033514	Vibrio cholerae strain E4 plasmid pVCR94, complete sequence	171829	154083	160569	171829	transposase,integrase	Escherichia_phage(50.0%)	10	144852:144864	164142:164154
144852:144864	attL	GCCGCCGCAGGTG	NA	NA	NA	NA
AYV08634.1|154083_154788_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
AYV08635.1|155324_156338_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
AYV08636.1|156494_156968_+	trimethoprim-resistant dihydrofolate reductase DfrA15	NA	G3MBI7	Bacillus_virus	30.8	6.9e-18
AYV08637.1|157168_157516_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
AYV08638.1|157509_158349_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
AYV08639.1|158278_158458_-	hypothetical protein	NA	NA	NA	NA	NA
AYV08640.1|158476_158977_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYV08641.1|159282_159396_-	NTP-binding protein	NA	NA	NA	NA	NA
AYV08642.1|159483_160248_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
AYV08643.1|160311_160569_+	DDE domain-containing protein	NA	A0A077SL39	Escherichia_phage	61.9	8.9e-12
164142:164154	attR	CACCTGCGGCGGC	NA	NA	NA	NA
