assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003798225.1_ASM379822v1	CP033699	Yersinia pestis strain FDAARGOS_601 chromosome, complete genome	1	593465-593577	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	CTTCACTCGGCTGCTCAAATGTGCTTT	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,RT	NA|93aa|up_4|CP033699.1_590119_590398_-,NA|28aa|up_2|CP033699.1_591133_591217_+,NA	NA|153aa|up_9|CP033699.1_588009_588468_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|151aa|up_8|CP033699.1_588663_589116_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|76aa|up_7|CP033699.1_589155_589383_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|107aa|up_6|CP033699.1_589387_589708_-	PRK02801, PRK02801, primosomal replication protein N; Provisional	NA|131aa|up_5|CP033699.1_589713_590106_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|93aa|up_4|CP033699.1_590119_590398_-	NA	NA|234aa|up_3|CP033699.1_590472_591174_-	PRK10566, PRK10566, esterase; Provisional	NA|28aa|up_2|CP033699.1_591133_591217_+	NA	NA|341aa|up_1|CP033699.1_591230_592253_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|261aa|up_0|CP033699.1_592249_593032_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|879aa|down_0|CP033699.1_593996_596633_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|390aa|down_1|CP033699.1_597006_598176_-	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|335aa|down_2|CP033699.1_598420_599425_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|258aa|down_3|CP033699.1_599593_600367_+	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|458aa|down_4|CP033699.1_600533_601907_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|831aa|down_5|CP033699.1_602505_604998_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|206aa|down_6|CP033699.1_605219_605837_+	pfam06438, HasA, Heme-binding protein A (HasA)	NA|603aa|down_7|CP033699.1_606002_607811_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|443aa|down_8|CP033699.1_607886_609215_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|268aa|down_9|CP033699.1_609279_610083_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
GCA_003798225.1_ASM379822v1	CP033699	Yersinia pestis strain FDAARGOS_601 chromosome, complete genome	2	1343380-1343501	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	CTTAATGCCAATATTAATCGACATAATCAATTG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,RT	NA,NA|107aa|down_0|CP033699.1_1343755_1344076_+	NA|685aa|up_9|CP033699.1_1329563_1331618_+	PRK11054, helD, DNA helicase IV; Provisional	NA|155aa|up_8|CP033699.1_1331678_1332143_-	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|227aa|up_7|CP033699.1_1332321_1333002_-	PRK03641, PRK03641, DUF2057 family protein	NA|139aa|up_6|CP033699.1_1333317_1333734_+	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|106aa|up_5|CP033699.1_1333842_1334160_-	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|397aa|up_4|CP033699.1_1334220_1335411_-	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|93aa|up_3|CP033699.1_1335504_1335783_+	PRK14426, PRK14426, acylphosphatase; Provisional	NA|110aa|up_2|CP033699.1_1335834_1336164_-	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|806aa|up_1|CP033699.1_1339809_1342227_-	pfam01565, FAD_binding_4, FAD binding domain	NA|249aa|up_0|CP033699.1_1342380_1343127_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|107aa|down_0|CP033699.1_1343755_1344076_+	NA	NA|153aa|down_1|CP033699.1_1344405_1344864_+	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|428aa|down_2|CP033699.1_1344853_1346137_+	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|249aa|down_3|CP033699.1_1346129_1346876_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|413aa|down_4|CP033699.1_1346891_1348130_+	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|240aa|down_5|CP033699.1_1348122_1348842_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|254aa|down_6|CP033699.1_1348834_1349596_+	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|263aa|down_7|CP033699.1_1349598_1350387_+	cd05233, SDR_c, classical (c) SDRs	NA|163aa|down_8|CP033699.1_1350425_1350914_+	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|83aa|down_9|CP033699.1_1350951_1351200_+	PRK07117, PRK07117, acyl carrier protein; Validated
GCA_003798225.1_ASM379822v1	CP033699	Yersinia pestis strain FDAARGOS_601 chromosome, complete genome	3	1470417-1470624	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	DEDDh	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Unclear	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,RT	NA|16aa|up_7|CP033699.1_1462077_1462125_-,NA|72aa|up_1|CP033699.1_1468325_1468541_+,NA	NA|444aa|up_9|CP033699.1_1459560_1460892_-	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|300aa|up_8|CP033699.1_1460895_1461795_-	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|16aa|up_7|CP033699.1_1462077_1462125_-	NA	NA|276aa|up_6|CP033699.1_1462500_1463328_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|332aa|up_5|CP033699.1_1464161_1465157_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|230aa|up_4|CP033699.1_1465153_1465843_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|298aa|up_3|CP033699.1_1465800_1466694_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|364aa|up_2|CP033699.1_1466979_1468071_+	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|72aa|up_1|CP033699.1_1468325_1468541_+	NA	NA|464aa|up_0|CP033699.1_1468530_1469922_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	DEDDh|477aa|down_0|CP033699.1_1470658_1472089_-	PRK11779, sbcB, exonuclease I; Provisional	NA|380aa|down_1|CP033699.1_1472351_1473491_+	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	NA|106aa|down_2|CP033699.1_1473924_1474242_+	PRK05423, PRK05423, DUF496 family protein	NA|403aa|down_3|CP033699.1_1474617_1475826_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1051aa|down_4|CP033699.1_1475788_1478941_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|467aa|down_5|CP033699.1_1479869_1481270_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|142aa|down_6|CP033699.1_1481278_1481704_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|247aa|down_7|CP033699.1_1482128_1482869_+	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|281aa|down_8|CP033699.1_1482916_1483759_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|426aa|down_9|CP033699.1_1483790_1485068_+	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA
GCA_003798225.1_ASM379822v1	CP033699	Yersinia pestis strain FDAARGOS_601 chromosome, complete genome	4	2685935-2686324	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAAATC	28,28,31	2	2	2686203-2686234|2686203-2686231	CP033699.1_2797173-2797142|CP033699.1_2797173-2797145	I-F:I-F:I-F	6,6,4	6	TypeI-F	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,RT	NA|70aa|up_9|CP033699.1_2673672_2673882_-,NA|63aa|down_1|CP033699.1_2688142_2688331_+,NA|425aa|down_2|CP033699.1_2688512_2689787_-,NA|372aa|down_3|CP033699.1_2689825_2690941_-	NA|70aa|up_9|CP033699.1_2673672_2673882_-	NA	NA|453aa|up_8|CP033699.1_2674005_2675364_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|168aa|up_7|CP033699.1_2675410_2675914_+	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|340aa|up_6|CP033699.1_2675924_2676944_+	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	cas6f|185aa|up_5|CP033699.1_2677021_2677576_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|335aa|up_4|CP033699.1_2677586_2678591_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|317aa|up_3|CP033699.1_2678608_2679559_-	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|449aa|up_2|CP033699.1_2679555_2680902_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas3f|1096aa|up_1|CP033699.1_2681310_2684598_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|329aa|up_0|CP033699.1_2684594_2685581_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|416aa|down_0|CP033699.1_2686658_2687906_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|63aa|down_1|CP033699.1_2688142_2688331_+	NA	NA|425aa|down_2|CP033699.1_2688512_2689787_-	NA	NA|372aa|down_3|CP033699.1_2689825_2690941_-	NA	NA|313aa|down_4|CP033699.1_2691063_2692002_-	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|352aa|down_5|CP033699.1_2692028_2693084_-	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|275aa|down_6|CP033699.1_2693230_2694055_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|292aa|down_7|CP033699.1_2694055_2694931_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|429aa|down_8|CP033699.1_2695039_2696326_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|347aa|down_9|CP033699.1_2696597_2697638_+	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria
GCA_003798225.1_ASM379822v1	CP033699	Yersinia pestis strain FDAARGOS_601 chromosome, complete genome	5	3299958-3300168	5,3	CRISPRCasFinder,CRT	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAACT	28,29	2	2	3299986-3300017|3299987-3300017	CP033699.1_2137120-2137089|CP033699.1_2137119-2137089	I-F:I-F	3,3	3	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,RT	NA|101aa|up_9|CP033699.1_3284912_3285215_+,NA|194aa|down_5|CP033699.1_3312334_3312916_+,NA|84aa|down_9|CP033699.1_3314826_3315078_-	NA|101aa|up_9|CP033699.1_3284912_3285215_+	NA	NA|272aa|up_8|CP033699.1_3285417_3286233_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|307aa|up_7|CP033699.1_3286242_3287163_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|378aa|up_6|CP033699.1_3289180_3290314_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|343aa|up_5|CP033699.1_3290337_3291366_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|516aa|up_4|CP033699.1_3291377_3292925_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|310aa|up_3|CP033699.1_3292973_3293903_-	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|649aa|up_2|CP033699.1_3295307_3297254_-	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|509aa|up_1|CP033699.1_3297267_3298794_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|285aa|up_0|CP033699.1_3299099_3299954_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|185aa|down_0|CP033699.1_3300521_3301076_+	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|2005aa|down_1|CP033699.1_3301446_3307461_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|293aa|down_2|CP033699.1_3307517_3308396_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|403aa|down_3|CP033699.1_3308429_3309638_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|82aa|down_4|CP033699.1_3311416_3311662_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|194aa|down_5|CP033699.1_3312334_3312916_+	NA	NA|134aa|down_6|CP033699.1_3313183_3313585_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|134aa|down_7|CP033699.1_3313817_3314219_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|191aa|down_8|CP033699.1_3314230_3314803_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|84aa|down_9|CP033699.1_3314826_3315078_-	NA
GCA_003798225.1_ASM379822v1	CP033699	Yersinia pestis strain FDAARGOS_601 chromosome, complete genome	6	3975269-3975348	6	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	CAGCCGCAGCCACGCTCAGCCATTC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,RT	NA|48aa|up_9|CP033699.1_3963038_3963182_+,NA|135aa|down_4|CP033699.1_3982006_3982411_-,NA|157aa|down_5|CP033699.1_3982488_3982959_-,NA|85aa|down_7|CP033699.1_3984482_3984737_-	NA|48aa|up_9|CP033699.1_3963038_3963182_+	NA	NA|417aa|up_8|CP033699.1_3963150_3964401_-	PRK11021, PRK11021, putative transporter; Provisional	NA|477aa|up_7|CP033699.1_3964437_3965868_-	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA|952aa|up_6|CP033699.1_3966002_3968858_-	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|436aa|up_5|CP033699.1_3969028_3970336_-	COG3025, COG3025, Uncharacterized conserved protein [Function unknown]	NA|208aa|up_4|CP033699.1_3970639_3971263_+	PRK10884, PRK10884, SH3 domain-containing protein; Provisional	NA|413aa|up_3|CP033699.1_3971422_3972661_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|273aa|up_2|CP033699.1_3972896_3973715_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|120aa|up_1|CP033699.1_3973988_3974348_-	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA|217aa|up_0|CP033699.1_3974455_3975106_+	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|338aa|down_0|CP033699.1_3975351_3976365_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|72aa|down_1|CP033699.1_3976770_3976986_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|583aa|down_2|CP033699.1_3977121_3978870_+	PRK05667, dnaG, DNA primase; Validated	NA|613aa|down_3|CP033699.1_3979027_3980866_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|135aa|down_4|CP033699.1_3982006_3982411_-	NA	NA|157aa|down_5|CP033699.1_3982488_3982959_-	NA	NA|461aa|down_6|CP033699.1_3982967_3984350_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|85aa|down_7|CP033699.1_3984482_3984737_-	NA	NA|261aa|down_8|CP033699.1_3984972_3985755_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|341aa|down_9|CP033699.1_3985751_3986774_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
