The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033709	Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome	4582218	445613	453415	4582218	transposase	uncultured_Mediterranean_phage(33.33%)	6	NA	NA
AYW94824.1|445613_448169_+	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	4.4e-26
AYW94825.1|448435_449644_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
AYW94826.1|449872_450871_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.3	3.6e-32
AYW94827.1|450925_451927_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	2.3e-07
AYW94828.1|452030_452657_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.4	9.1e-34
AYW94829.1|452650_453415_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	46.7	4.2e-57
>prophage 2
CP033709	Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome	4582218	1494792	1567806	4582218	protease,transposase,tRNA,bacteriocin	uncultured_virus(25.0%)	56	NA	NA
AYW95694.1|1494792_1496181_+|tRNA	L-seryl-tRNA(Sec) selenium transferase	tRNA	NA	NA	NA	NA
AYW95695.1|1496177_1498151_+|tRNA	selenocysteinyl-tRNA-specific translation elongation factor SelB	tRNA	A0A2K9KZ60	Tupanvirus	25.1	1.1e-11
AYW95696.1|1499023_1500232_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
AYW95697.1|1500579_1501161_-	DUF4225 domain-containing protein	NA	NA	NA	NA	NA
AYW95698.1|1501518_1501722_+	hypothetical protein	NA	NA	NA	NA	NA
AYW95699.1|1501870_1503100_-	MFS transporter	NA	NA	NA	NA	NA
AYW95700.1|1504311_1505520_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
AYW95701.1|1507189_1509826_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AYW95702.1|1510199_1511369_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
AYW95703.1|1511613_1512618_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AYW98232.1|1512800_1513574_+	acetylglutamate kinase	NA	NA	NA	NA	NA
AYW95704.1|1513740_1515114_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AYW95705.1|1515712_1518205_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AYW95706.1|1518432_1519050_+	heme acquisition hemophore HasA	NA	NA	NA	NA	NA
AYW95707.1|1519215_1521024_+	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	31.2	3.5e-25
AYW95708.1|1521099_1522428_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AYW95709.1|1522492_1523296_+	energy transducer TonB	NA	NA	NA	NA	NA
AYW95710.1|1523411_1524875_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AYW95711.1|1524969_1525701_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	58.5	1.3e-47
AYW95712.1|1525847_1526765_+	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
AYW95713.1|1526747_1528148_-	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
AYW95714.1|1528353_1529001_+	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
AYW95715.1|1529013_1529421_+	YijD family membrane protein	NA	NA	NA	NA	NA
AYW95716.1|1529554_1530658_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
AYW95717.1|1531119_1533012_+	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	29.3	2.2e-14
AYW95718.1|1532956_1533820_+	glutamate racemase	NA	NA	NA	NA	NA
AYW95719.1|1534085_1534271_-	hypothetical protein	NA	NA	NA	NA	NA
AYW95720.1|1540698_1541655_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYW95721.1|1541740_1543231_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.2	1.2e-10
AYW95722.1|1543242_1544262_+	ABC transporter permease	NA	NA	NA	NA	NA
AYW95723.1|1544261_1545254_+	sugar ABC transporter permease YjfF	NA	NA	NA	NA	NA
AYW95724.1|1545240_1546122_-	transcriptional regulator	NA	NA	NA	NA	NA
AYW95725.1|1546240_1546579_+	DUF413 domain-containing protein	NA	NA	NA	NA	NA
AYW95726.1|1546959_1548483_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AYW95727.1|1548637_1548844_-	hypothetical protein	NA	NA	NA	NA	NA
AYW98233.1|1548866_1548965_+	ilv operon leader peptide	NA	NA	NA	NA	NA
AYW95728.1|1549106_1550753_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.7	4.1e-65
AYW95729.1|1550749_1551007_+	acetolactate synthase 2 small subunit	NA	NA	NA	NA	NA
AYW95730.1|1551029_1551956_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AYW95731.1|1552284_1554135_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AYW95732.1|1554140_1555685_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
AYW95733.1|1555815_1556280_-	DUF943 family protein	NA	NA	NA	NA	NA
AYW95734.1|1556297_1556762_-	DUF943 family protein	NA	NA	NA	NA	NA
AYW95735.1|1556841_1557303_-	DUF943 family protein	NA	NA	NA	NA	NA
AYW95736.1|1557286_1558171_-	DUF3289 family protein	NA	NA	NA	NA	NA
AYW95737.1|1558818_1559028_+	hypothetical protein	NA	NA	NA	NA	NA
AYW95738.1|1559082_1559964_-	HTH-type transcriptional activator IlvY	NA	NA	NA	NA	NA
AYW95739.1|1560259_1561738_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AYW98234.1|1563661_1565104_+	colicin	NA	NA	NA	NA	NA
AYW95740.1|1565103_1565367_+	immunity protein	NA	NA	NA	NA	NA
AYW95741.1|1565628_1565874_+	HNH endonuclease	NA	NA	NA	NA	NA
AYW95742.1|1565882_1566137_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYW95743.1|1566253_1566709_+	HNH endonuclease	NA	NA	NA	NA	NA
AYW95744.1|1566710_1566965_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AYW95745.1|1567081_1567546_+	HNH endonuclease	NA	NA	NA	NA	NA
AYW95746.1|1567542_1567806_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 3
CP033709	Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome	4582218	1854297	1925498	4582218	tail,tRNA,protease,transposase,plate	Pseudomonas_phage(28.57%)	63	NA	NA
AYW95967.1|1854297_1855662_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	25.8	7.9e-14
AYW95968.1|1855751_1856426_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AYW95969.1|1856491_1856968_+	hypothetical protein	NA	NA	NA	NA	NA
AYW95970.1|1857397_1858153_-	DNA adenine methylase	NA	A2I2Y7	Vibrio_virus	65.1	4.5e-96
AYW98251.1|1858287_1858644_-	hypothetical protein	NA	A0A0A0YSY3	Erwinia_phage	46.3	8.3e-08
AYW95971.1|1859905_1860475_-	DUF2313 domain-containing protein	NA	A0A0M3LQE1	Mannheimia_phage	35.4	7.0e-25
AYW95972.1|1860471_1861533_-|plate	baseplate J/gp47 family protein	plate	A0A0M3LQN4	Mannheimia_phage	46.0	1.3e-75
AYW95973.1|1861532_1861883_-	hypothetical protein	NA	A0A2H4JDR8	uncultured_Caudovirales_phage	62.6	1.7e-29
AYW95974.1|1861937_1862588_-|plate	phage baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	48.2	2.5e-50
AYW95975.1|1862917_1864312_-|tail	phage tail protein	tail	B7SDP8	Haemophilus_phage	44.9	1.3e-91
AYW98252.1|1864298_1864553_-	DUF2635 domain-containing protein	NA	B7SDP7	Haemophilus_phage	56.5	1.1e-06
AYW95976.1|1864545_1865196_-	DUF1834 family protein	NA	NA	NA	NA	NA
AYW95977.1|1865192_1865621_-	DUF1320 domain-containing protein	NA	A0A1B0T6F3	Thiobacimonas_phage	38.8	1.0e-12
AYW95978.1|1865632_1865920_-	hypothetical protein	NA	NA	NA	NA	NA
AYW95979.1|1866102_1866603_-	DUF1804 family protein	NA	L7P7L4	Pseudomonas_phage	58.3	4.2e-50
AYW95980.1|1866605_1866893_-	hypothetical protein	NA	NA	NA	NA	NA
AYW95981.1|1866889_1867132_-	hypothetical protein	NA	NA	NA	NA	NA
AYW95982.1|1867128_1867716_-	hypothetical protein	NA	A0A2D1GNR2	Pseudomonas_phage	44.5	4.7e-24
AYW95983.1|1867693_1867948_-	hypothetical protein	NA	A0A2D1GNW8	Pseudomonas_phage	47.6	1.8e-12
AYW98253.1|1867938_1868571_-	glycoside hydrolase family 19 protein	NA	F1C5D2	Cronobacter_phage	61.5	1.4e-66
AYW95984.1|1868668_1868938_-	hypothetical protein	NA	NA	NA	NA	NA
AYW95985.1|1868949_1869384_-	hypothetical protein	NA	A0A2D1GNW5	Pseudomonas_phage	50.7	3.8e-31
AYW95986.1|1869383_1869785_-	regulatory protein GemA	NA	A0A0A7DJY7	Pseudomonas_phage	42.7	1.8e-22
AYW95987.1|1869769_1870243_-	hypothetical protein	NA	NA	NA	NA	NA
AYW95988.1|1871022_1873074_-|transposase	transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	49.2	7.1e-176
AYW95989.1|1873070_1873292_-	transcriptional regulator	NA	M1PVU4	Vibrio_phage	73.9	4.5e-20
AYW95990.1|1873525_1874062_+	hypothetical protein	NA	A0A0C4UQZ2	Shigella_phage	26.9	2.7e-10
AYW95991.1|1874726_1875023_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA	NA
AYW95992.1|1875047_1876013_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AYW98254.1|1876601_1877483_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AYW95993.1|1877558_1879013_-	sodium/panthothenate symporter	NA	NA	NA	NA	NA
AYW95994.1|1879002_1879245_-	DUF997 family protein	NA	NA	NA	NA	NA
AYW95995.1|1880354_1881704_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AYW95996.1|1881715_1882180_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AYW95997.1|1882337_1882790_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AYW95998.1|1883051_1883672_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
AYW95999.1|1883671_1884772_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
AYW96000.1|1884994_1885972_-	oxidoreductase	NA	NA	NA	NA	NA
AYW96001.1|1886372_1888289_+	RNase E specificity factor CsrD	NA	NA	NA	NA	NA
AYW96002.1|1888625_1889669_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.0e-06
AYW96003.1|1889873_1890869_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
AYW96004.1|1890865_1891354_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
AYW96005.1|1891367_1891961_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AYW96006.1|1891950_1893420_+	ribonuclease G	NA	NA	NA	NA	NA
AYW96007.1|1893513_1897419_+	AsmA2 domain-containing protein	NA	NA	NA	NA	NA
AYW96008.1|1897415_1898285_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AYW96009.1|1898296_1899742_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
AYW96010.1|1899942_1902801_-	RHS repeat protein	NA	NA	NA	NA	NA
AYW96011.1|1903060_1903420_-	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
AYW96012.1|1903416_1903818_-	M15 family peptidase	NA	A0A249XWK9	Proteus_phage	61.0	2.8e-36
AYW96013.1|1903830_1904133_-	hypothetical protein	NA	NA	NA	NA	NA
AYW98255.1|1908816_1910958_-	toxin subunit	NA	NA	NA	NA	NA
AYW96014.1|1912435_1914928_-	toxin	NA	NA	NA	NA	NA
AYW96015.1|1915163_1916030_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYW96016.1|1916290_1917202_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA	NA
AYW96017.1|1917504_1917708_+	DUF1656 domain-containing protein	NA	NA	NA	NA	NA
AYW96018.1|1917715_1918651_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA	NA
AYW96019.1|1918652_1920608_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA	NA
AYW96020.1|1920874_1922344_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AYW98256.1|1922553_1923012_+	ribonuclease	NA	NA	NA	NA	NA
AYW96021.1|1923016_1923298_+	ribonuclease inhibitor	NA	NA	NA	NA	NA
AYW96022.1|1923428_1923977_-	ribosome-associated protein	NA	NA	NA	NA	NA
AYW96023.1|1924157_1925498_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
>prophage 4
CP033709	Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome	4582218	3185485	3260764	4582218	protease,transposase,tRNA,coat	uncultured_Caudovirales_phage(20.0%)	59	NA	NA
AYW98336.1|3185485_3186601_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AYW97015.1|3186787_3187234_-	NUDIX hydrolase	NA	NA	NA	NA	NA
AYW97016.1|3187226_3187853_-	23S rRNA pseudouridine synthase E	NA	NA	NA	NA	NA
AYW97017.1|3187983_3189237_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	88.9	5.2e-20
AYW97018.1|3189371_3190415_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AYW97019.1|3190674_3190935_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97020.1|3191054_3192635_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	50.7	2.5e-35
AYW97021.1|3193554_3194412_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AYW97022.1|3194571_3194955_+	transcriptional regulator	NA	NA	NA	NA	NA
AYW97023.1|3195486_3196812_+	AppA family phytase/histidine-type acid phosphatase	NA	NA	NA	NA	NA
AYW97024.1|3197105_3197321_-	putative selenium delivery protein YdfZ	NA	J9Q802	Salmonella_phage	44.6	1.4e-05
AYW97025.1|3197611_3198514_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97026.1|3198602_3199052_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AYW97027.1|3199519_3200053_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97028.1|3200335_3201346_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AYW97029.1|3201819_3203028_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
AYW97030.1|3203095_3206278_-	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	62.3	0.0e+00
AYW97031.1|3206818_3207031_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	80.0	2.0e-25
AYW97032.1|3207122_3207437_+	protein DsrB	NA	NA	NA	NA	NA
AYW97033.1|3207619_3209359_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.7	9.7e-09
AYW97034.1|3210472_3211183_+	MgtC family protein	NA	G3MA03	Bacillus_virus	39.3	6.3e-15
AYW97035.1|3211575_3214275_+	magnesium-translocating P-type ATPase	NA	M1HM40	Paramecium_bursaria_Chlorella_virus	25.5	1.1e-43
AYW97036.1|3215453_3215813_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
AYW97037.1|3215816_3216398_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AYW97038.1|3216602_3217490_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AYW97039.1|3217486_3218824_+	motility protein MotB	NA	NA	NA	NA	NA
AYW97040.1|3218834_3220991_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AYW97041.1|3221153_3221651_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AYW97042.1|3222270_3225135_+	DUF2339 domain-containing protein	NA	NA	NA	NA	NA
AYW97043.1|3225203_3225905_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97044.1|3226145_3227819_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.7	1.5e-11
AYW97045.1|3228003_3229614_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.2	3.9e-12
AYW97046.1|3229786_3230659_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA	NA
AYW97047.1|3230658_3231708_+	chemotaxis response regulator protein-glutamate methylesterase	NA	Q56AR1	Bacillus_thuringiensis_phage	32.0	6.1e-06
AYW97048.1|3231808_3232198_+	chemotaxis protein CheY	NA	A0A2K9L4R0	Tupanvirus	32.3	1.3e-06
AYW97049.1|3232207_3232852_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AYW97050.1|3233143_3233263_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97051.1|3233386_3234151_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A076YN96	Rhizobium_phage	27.2	1.9e-09
AYW97052.1|3234507_3237150_+	cell surface protein	NA	NA	NA	NA	NA
AYW97053.1|3237249_3238203_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97054.1|3238821_3240051_-	alanine racemase	NA	NA	NA	NA	NA
AYW97055.1|3240452_3240647_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97056.1|3241212_3241461_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97057.1|3241853_3243110_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
AYW97058.1|3243264_3243498_+	DNA-binding protein	NA	NA	NA	NA	NA
AYW97059.1|3244293_3244683_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AYW97060.1|3244792_3245032_-	DUF1480 family protein	NA	NA	NA	NA	NA
AYW97061.1|3245239_3246229_-|coat	spore coat protein U	coat	NA	NA	NA	NA
AYW97062.1|3246434_3248882_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
AYW97063.1|3248983_3249736_-	molecular chaperone	NA	NA	NA	NA	NA
AYW97064.1|3249766_3250324_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
AYW97065.1|3250344_3250875_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
AYW97066.1|3250880_3251435_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
AYW97067.1|3251917_3254569_-	PqiB family protein	NA	NA	NA	NA	NA
AYW97068.1|3254537_3255890_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AYW97069.1|3256016_3256514_+	GAF domain-containing protein	NA	NA	NA	NA	NA
AYW97070.1|3256609_3257323_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
AYW97071.1|3257342_3259421_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	34.8	4.0e-86
AYW97072.1|3259882_3260764_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 5
CP033709	Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome	4582218	3820631	3860116	4582218	plate,transposase,integrase	Salmonella_phage(40.0%)	45	3814423:3814438	3861774:3861789
3814423:3814438	attL	GGTTCATCAAACAGGA	NA	NA	NA	NA
AYW97538.1|3820631_3820736_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
AYW97539.1|3821413_3821848_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97540.1|3821859_3822429_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97541.1|3824092_3825169_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
AYW97542.1|3825234_3825525_-	antitoxin	NA	K4NZP3	Burkholderia_phage	39.4	1.8e-05
AYW97543.1|3825505_3825778_-	BrnT family toxin	NA	NA	NA	NA	NA
AYW97544.1|3825808_3826168_+|plate	phage baseplate assembly protein V	plate	F1BUP5	Erwinia_phage	62.5	8.9e-18
AYW97545.1|3826164_3826464_+	lysozyme	NA	A0A218M4K8	Erwinia_phage	64.9	2.6e-23
AYW97546.1|3826480_3826768_+	hypothetical protein	NA	NA	NA	NA	NA
AYW98364.1|3827277_3827733_+	DUF2778 domain-containing protein	NA	NA	NA	NA	NA
AYW98365.1|3827737_3827992_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97547.1|3828304_3829817_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
AYW97548.1|3830037_3830382_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AYW97549.1|3830643_3830826_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97550.1|3831017_3831191_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97551.1|3831434_3831581_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97552.1|3831949_3832177_-	DNA helicase	NA	A0A192Y673	Salmonella_phage	57.7	2.1e-12
AYW97553.1|3832287_3832803_+|integrase	integrase	integrase	H9C152	Pectobacterium_phage	67.5	1.6e-60
AYW97554.1|3832735_3832960_+|integrase	integrase	integrase	K7PLZ2	Enterobacterial_phage	76.8	1.5e-18
AYW97555.1|3834273_3834654_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97556.1|3834722_3834944_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97557.1|3834959_3835502_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97558.1|3835536_3835905_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYW97559.1|3835965_3836157_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97560.1|3836169_3836373_+	DNA-binding protein	NA	NA	NA	NA	NA
AYW97561.1|3836384_3836567_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97562.1|3836547_3837552_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	68.3	5.4e-121
AYW97563.1|3837626_3837842_+	late control protein B	NA	S4TNZ3	Salmonella_phage	60.6	1.1e-18
AYW97564.1|3838506_3839055_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AYW97565.1|3839113_3840967_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AYW97566.1|3840938_3841595_-	two-component system response regulator UvrY	NA	NA	NA	NA	NA
AYW97567.1|3842257_3842482_+	DUF2594 family protein	NA	NA	NA	NA	NA
AYW97568.1|3842609_3842951_+	GlpM family protein	NA	NA	NA	NA	NA
AYW97569.1|3842978_3843233_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97570.1|3843572_3844124_-	attachment protein	NA	A0A1B0VBR9	Salmonella_phage	34.4	1.6e-21
AYW97571.1|3845238_3846663_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA	NA
AYW97572.1|3846788_3847967_-	YjhT family mutarotase	NA	NA	NA	NA	NA
AYW97573.1|3848360_3848960_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA	NA
AYW97574.1|3849045_3850350_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA	NA
AYW97575.1|3850360_3851467_-	iron uptake system protein EfeO	NA	NA	NA	NA	NA
AYW97576.1|3851496_3852345_-	FTR1 family protein	NA	NA	NA	NA	NA
AYW97577.1|3852695_3854180_-	sodium/proline symporter PutP	NA	NA	NA	NA	NA
AYW97578.1|3854209_3854407_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97579.1|3854751_3858723_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AYW97580.1|3858907_3860116_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
3861774:3861789	attR	GGTTCATCAAACAGGA	NA	NA	NA	NA
>prophage 6
CP033709	Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome	4582218	4091249	4165188	4582218	lysis,plate,transposase,tRNA	Indivirus(11.11%)	53	NA	NA
AYW97772.1|4091249_4093277_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.1	8.0e-55
AYW98374.1|4093405_4094068_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97773.1|4094754_4095846_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AYW97774.1|4095863_4097117_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97775.1|4097448_4098630_+	MFS transporter	NA	NA	NA	NA	NA
AYW97776.1|4098871_4099279_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97777.1|4099275_4099971_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
AYW97778.1|4100296_4101181_+	cytidine deaminase	NA	NA	NA	NA	NA
AYW97779.1|4101536_4103234_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
AYW97780.1|4103514_4104252_+	outer membrane permeability protein SanA	NA	NA	NA	NA	NA
AYW97781.1|4104692_4105703_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA	NA
AYW97782.1|4105723_4107244_-	galactose/methyl galactoside import ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.9	2.6e-10
AYW97783.1|4107473_4108466_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA	NA
AYW97784.1|4109213_4110380_-	DUF418 family protein	NA	NA	NA	NA	NA
AYW97785.1|4110434_4111097_-	GTP cyclohydrolase I FolE	NA	R9TJA5	Vibrio_phage	53.5	5.8e-55
AYW97786.1|4111280_4112432_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA	NA
AYW97787.1|4112567_4113437_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AYW98375.1|4113716_4114850_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.2	4.6e-36
AYW97788.1|4114870_4115713_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
AYW97789.1|4115969_4116182_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97790.1|4116265_4118626_+	ABC transporter permease	NA	NA	NA	NA	NA
AYW97791.1|4118627_4119890_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AYW97792.1|4119891_4120560_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.0	2.3e-35
AYW97793.1|4120569_4121880_+	radical SAM protein	NA	NA	NA	NA	NA
AYW97794.1|4122414_4123689_+	molybdopterin molybdotransferase	NA	NA	NA	NA	NA
AYW98376.1|4123693_4124461_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
AYW97795.1|4124568_4125777_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	5.4e-51
AYW97796.1|4125855_4126503_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97797.1|4126730_4128326_-	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	28.5	6.1e-58
AYW97798.1|4129008_4129632_+	hypothetical protein	NA	NA	NA	NA	NA
AYW97799.1|4129843_4131211_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97800.1|4131235_4131688_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
AYW97801.1|4131687_4132290_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
AYW97802.1|4132264_4133350_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AYW97803.1|4133313_4135077_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AYW97804.1|4135168_4135627_-	DUF943 family protein	NA	NA	NA	NA	NA
AYW97805.1|4135629_4136745_-	DUF3289 family protein	NA	NA	NA	NA	NA
AYW97806.1|4136762_4138364_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
AYW97807.1|4138407_4139193_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97808.1|4139241_4142283_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97809.1|4142364_4145787_-	type VI secretion protein VasK	NA	NA	NA	NA	NA
AYW98377.1|4145783_4146905_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97810.1|4149167_4149638_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97811.1|4149811_4151995_-	M23 family metallopeptidase	NA	NA	NA	NA	NA
AYW97812.1|4152010_4152271_-	DUF2345 domain-containing protein	NA	NA	NA	NA	NA
AYW97813.1|4152424_4153198_-	hypothetical protein	NA	NA	NA	NA	NA
AYW97814.1|4153194_4155495_-	M23 family metallopeptidase	NA	NA	NA	NA	NA
AYW97815.1|4155510_4157859_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.5	1.5e-17
AYW97816.1|4157855_4160504_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.6	5.1e-94
AYW97817.1|4160921_4161413_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
AYW97818.1|4161416_4163153_-	OmpA family protein	NA	NA	NA	NA	NA
AYW97819.1|4163152_4163839_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
AYW97820.1|4163835_4165188_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 7
CP033709	Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome	4582218	4406712	4414968	4582218	plate,tail,coat	Shigella_phage(33.33%)	9	NA	NA
AYW98016.1|4406712_4407132_-|tail	phage tail protein	tail	F1BUK2	Cronobacter_phage	32.3	8.3e-07
AYW98017.1|4407133_4407850_-|tail	phage tail protein	tail	NA	NA	NA	NA
AYW98018.1|4407946_4408549_-	DUF2313 domain-containing protein	NA	A0A2P9JZK7	Alteromonadaceae_phage	38.6	2.0e-33
AYW98019.1|4408545_4409682_-|plate	baseplate J/gp47 family protein	plate	B5TK75	Pseudomonas_phage	30.5	3.5e-31
AYW98020.1|4409685_4410141_-	hypothetical protein	NA	A0A0C4UR04	Shigella_phage	43.8	4.3e-17
AYW98021.1|4410137_4410734_-|plate	baseplate assembly protein	plate	NA	NA	NA	NA
AYW98022.1|4410749_4411805_-|tail	phage tail protein	tail	A0A2I7S9G1	Vibrio_phage	27.5	1.3e-37
AYW98023.1|4411801_4413208_-	hypothetical protein	NA	Q8SBG8	Shigella_phage	33.7	2.1e-17
AYW98024.1|4413474_4414968_-|coat	coat protein	coat	NA	NA	NA	NA
>prophage 1
CP033708	Yersinia pseudotuberculosis strain FDAARGOS_583 plasmid unnamed, complete sequence	69970	0	6175	69970	transposase	Enterobacteria_phage(50.0%)	7	NA	NA
AYW94378.1|2163_3462_+	trimeric autotransporter adhesin YadA	NA	Q9MCI8	Enterobacteria_phage	54.2	2.0e-11
AYW94379.1|3464_3764_-	hypothetical protein	NA	NA	NA	NA	NA
AYW94380.1|3790_4060_-	hypothetical protein	NA	NA	NA	NA	NA
AYW94381.1|4128_4587_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
AYW94382.1|4758_5076_+|transposase	transposase	transposase	NA	NA	NA	NA
AYW94383.1|5063_5510_+	hypothetical protein	NA	NA	NA	NA	NA
AYW94448.1|5926_6175_+	phospholipase	NA	A0A1B2LRT6	Wolbachia_phage	47.1	4.1e-06
>prophage 2
CP033708	Yersinia pseudotuberculosis strain FDAARGOS_583 plasmid unnamed, complete sequence	69970	16940	18149	69970	transposase	uncultured_virus(100.0%)	1	NA	NA
AYW94392.1|16940_18149_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.3	1.6e-50
>prophage 3
CP033708	Yersinia pseudotuberculosis strain FDAARGOS_583 plasmid unnamed, complete sequence	69970	57282	59411	69970		Yersinia_phage(100.0%)	2	NA	NA
AYW94436.1|57282_58449_+	plasmid-partitioning protein SopA	NA	Q7Y3Y6	Yersinia_phage	85.3	3.5e-196
AYW94452.1|58448_59411_+	ParB/RepB/Spo0J family plasmid partition protein	NA	Q7Y3Y7	Yersinia_phage	56.6	3.1e-89
>prophage 4
CP033708	Yersinia pseudotuberculosis strain FDAARGOS_583 plasmid unnamed, complete sequence	69970	63446	68669	69970	transposase	Enterobacteria_phage(66.67%)	7	NA	NA
AYW94441.1|63446_64619_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	95.6	1.8e-221
AYW94442.1|65394_65820_+	CesT family type III secretion system chaperone	NA	NA	NA	NA	NA
AYW94443.1|65743_65932_-	hypothetical protein	NA	NA	NA	NA	NA
AYW94444.1|65967_67067_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	38.9	2.8e-46
AYW94445.1|67190_67496_-	hypothetical protein	NA	NA	NA	NA	NA
AYW94446.1|67634_68099_-	hypothetical protein	NA	NA	NA	NA	NA
AYW94447.1|68117_68669_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	80.3	5.9e-77
