The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033740	Enterococcus sp. FDAARGOS_553 chromosome, complete genome	3150721	462757	505658	3150721	transposase,tail,integrase	Bacillus_virus(16.67%)	49	487553:487574	505754:505775
AYY08823.1|462757_463948_-|transposase	IS256-like element ISLgar5 family transposase	transposase	NA	NA	NA	NA
AYY08824.1|464245_465592_-	aspartate ammonia-lyase	NA	NA	NA	NA	NA
AYY08825.1|465750_466182_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AYY08826.1|466240_466687_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AYY08827.1|466779_467952_-	MFS transporter	NA	NA	NA	NA	NA
AYY08828.1|467966_468719_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.8	4.5e-19
AYY08829.1|468744_469716_-	D-2-hydroxyacid dehydrogenase	NA	M1I636	Acanthocystis_turfacea_Chlorella_virus	32.1	9.8e-35
AYY08830.1|469728_470949_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AYY08831.1|470972_471719_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	5.0e-31
AYY08832.1|471715_472426_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYY08833.1|472438_473251_-	amino acid ABC transporter	NA	NA	NA	NA	NA
AYY08834.1|473286_474039_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AYY08835.1|474285_475029_+	hypothetical protein	NA	NA	NA	NA	NA
AYY08836.1|475065_475563_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AYY08837.1|476930_477188_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AYY08838.1|477609_477849_+	hypothetical protein	NA	NA	NA	NA	NA
AYY08839.1|478254_479019_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
AYY08840.1|479015_479669_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	36.4	3.1e-24
AYY08841.1|479752_480175_-	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	58.5	2.4e-38
AYY08842.1|481082_481577_+	ATP-binding protein	NA	NA	NA	NA	NA
AYY08843.1|481956_482313_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYY08844.1|482510_482594_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
AYY08845.1|482908_483109_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AYY08846.1|486142_487438_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	6.5e-10
487553:487574	attL	TTTAACCTACACTGCCTTCCAT	NA	NA	NA	NA
AYY08847.1|488268_488505_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08848.1|488491_489121_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08849.1|489167_489497_-	DUF771 domain-containing protein	NA	U3PBP3	Staphylococcus_phage	34.4	3.4e-08
AYY08850.1|489534_489831_-	hypothetical protein	NA	NA	NA	NA	NA
AYY11193.1|489951_490656_-|tail	phage tail protein	tail	A0A249XXB4	Clostridium_phage	54.4	1.2e-21
AYY08851.1|490903_491122_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08852.1|491122_491341_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYY08853.1|491477_492119_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYY08854.1|492170_493313_+|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	35.4	4.1e-56
AYY08855.1|494422_494782_+	hypothetical protein	NA	NA	NA	NA	NA
AYY08856.1|494778_495462_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AYY08857.1|495419_495818_+	hypothetical protein	NA	NA	NA	NA	NA
AYY08858.1|496050_496776_-|tail	phage tail protein	tail	A0A249XXB4	Clostridium_phage	51.3	2.4e-14
AYY08859.1|497214_497499_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08860.1|497482_497755_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08861.1|497777_498377_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08862.1|498376_498835_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08863.1|499279_499609_-	hypothetical protein	NA	NA	NA	NA	NA
AYY11194.1|499630_499891_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08864.1|501589_502495_-	hypothetical protein	NA	D2J048	Enterococcus_phage	38.8	1.5e-05
AYY08865.1|502491_502752_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08866.1|502882_503128_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08867.1|503203_503476_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08868.1|503631_504465_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYY08869.1|504506_505658_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	33.3	1.3e-54
505754:505775	attR	TTTAACCTACACTGCCTTCCAT	NA	NA	NA	NA
>prophage 2
CP033740	Enterococcus sp. FDAARGOS_553 chromosome, complete genome	3150721	1404329	1413858	3150721	transposase,tRNA	Only_Syngen_Nebraska_virus(33.33%)	7	NA	NA
AYY09660.1|1404329_1405376_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.9	3.3e-20
AYY09661.1|1405390_1406326_+	ABC transporter ATP-binding protein	NA	A0A1J0FA64	Only_Syngen_Nebraska_virus	23.5	2.7e-05
AYY09662.1|1406342_1407380_+|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	45.1	1.7e-61
AYY09663.1|1407578_1408409_-	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	31.7	2.7e-25
AYY09664.1|1408454_1408745_-	hypothetical protein	NA	NA	NA	NA	NA
AYY09665.1|1408908_1410915_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	37.7	1.9e-96
AYY09666.1|1411179_1413858_+	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	28.2	1.4e-70
>prophage 3
CP033740	Enterococcus sp. FDAARGOS_553 chromosome, complete genome	3150721	2412880	2421934	3150721	transposase	Lysinibacillus_phage(16.67%)	9	NA	NA
AYY10536.1|2412880_2414176_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	6.5e-10
AYY10537.1|2414359_2414746_-	hypothetical protein	NA	NA	NA	NA	NA
AYY10538.1|2415010_2415733_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SEW9	Cyanophage	41.7	1.8e-46
AYY10539.1|2415723_2415987_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AYY10540.1|2415983_2416661_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AYY10541.1|2416653_2418882_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	3.5e-152
AYY10542.1|2418866_2420288_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.5	7.3e-55
AYY10543.1|2420309_2421356_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.6	2.9e-61
AYY10544.1|2421352_2421934_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.5	1.3e-26
>prophage 4
CP033740	Enterococcus sp. FDAARGOS_553 chromosome, complete genome	3150721	2697587	2706477	3150721		Lactobacillus_phage(42.86%)	8	NA	NA
AYY10789.1|2697587_2700011_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	66.5	0.0e+00
AYY10790.1|2700029_2700635_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	68.2	7.4e-73
AYY10791.1|2700934_2701849_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	44.7	3.0e-70
AYY10792.1|2702091_2703042_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
AYY10793.1|2703156_2703618_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	54.0	2.9e-37
AYY10794.1|2703637_2704816_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	50.4	5.6e-101
AYY10795.1|2704808_2705429_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.9	2.5e-31
AYY10796.1|2705397_2706477_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	35.3	2.0e-36
>prophage 1
CP033739	Enterococcus sp. FDAARGOS_553 plasmid unnamed1, complete sequence	68599	3542	36024	68599	bacteriocin,integrase,transposase	Streptococcus_phage(50.0%)	36	10753:10767	42332:42346
AYY08359.1|3542_4223_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	90.7	2.6e-119
AYY08360.1|4399_5446_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.1	3.1e-26
AYY08361.1|5779_6094_-	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
AYY08362.1|6170_7514_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AYY08363.1|7532_7835_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
AYY08364.1|7882_9322_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	31.5	1.3e-51
AYY08365.1|9395_10289_-	ROK family protein	NA	NA	NA	NA	NA
10753:10767	attL	CTGTTAAAGCAATTA	NA	NA	NA	NA
AYY08366.1|11516_12203_+|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.1	2.4e-112
AYY08367.1|12798_13281_+	hypothetical protein	NA	NA	NA	NA	NA
AYY08368.1|13302_13560_+	hypothetical protein	NA	NA	NA	NA	NA
AYY08369.1|13677_14016_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08370.1|14042_14612_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AYY08371.1|14867_14954_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
AYY08372.1|15133_15406_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08373.1|15709_16171_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08374.1|16195_16561_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08375.1|16958_17645_+|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.1	2.4e-112
AYY08376.1|17959_19639_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
AYY08377.1|20786_21074_-	type III secretion system protein PrgN	NA	NA	NA	NA	NA
AYY08378.1|21138_21819_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	89.8	2.2e-118
AYY08379.1|21906_22191_-	type III secretion system protein PrgN	NA	NA	NA	NA	NA
AYY08380.1|22348_23842_-	replication protein RepR	NA	NA	NA	NA	NA
AYY08381.1|24225_24552_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AYY08382.1|24938_25904_+	ParA family protein	NA	NA	NA	NA	NA
AYY08383.1|25903_26368_+	hypothetical protein	NA	NA	NA	NA	NA
AYY08384.1|26740_28117_+	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	41.9	7.7e-94
AYY08385.1|28100_28604_+	hypothetical protein	NA	NA	NA	NA	NA
AYY08386.1|28697_29288_+	DUF159 family protein	NA	A0A1P8CX02	Bacillus_phage	34.6	1.3e-10
AYY08387.1|29372_29945_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08388.1|30076_30265_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08389.1|30728_30830_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08390.1|31613_32621_-	Abi family protein	NA	A3QSC6	Clostridium_virus	26.8	4.4e-22
AYY08391.1|33371_33560_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08392.1|33677_34382_-	hypothetical protein	NA	NA	NA	NA	NA
AYY08393.1|34430_35030_-|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	35.6	1.9e-28
AYY08394.1|35727_36024_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
42332:42346	attR	CTGTTAAAGCAATTA	NA	NA	NA	NA
>prophage 2
CP033739	Enterococcus sp. FDAARGOS_553 plasmid unnamed1, complete sequence	68599	54635	59630	68599	integrase	Streptococcus_phage(100.0%)	8	52075:52088	60296:60309
52075:52088	attL	TTTCTTCTTTATCT	NA	NA	NA	NA
AYY08412.1|54635_54920_-	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	96.7	5.6e-07
AYY08413.1|54936_55152_-	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	97.1	4.2e-31
AYY08414.1|55225_55795_-	ParA family protein	NA	A0A1X9I765	Streptococcus_phage	95.8	8.1e-98
AYY08415.1|56199_56478_-	topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	92.6	6.6e-37
AYY08416.1|56583_57429_-	AraC family transcriptional regulator	NA	A0A1B0RXG1	Streptococcus_phage	42.9	1.3e-22
AYY08417.1|57583_57976_-	recombinase family protein	NA	NA	NA	NA	NA
AYY08418.1|58154_59348_-|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	64.1	2.4e-144
AYY08419.1|59426_59630_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	6.6e-26
60296:60309	attR	TTTCTTCTTTATCT	NA	NA	NA	NA
