The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033861	Alcaligenes faecalis strain FDAARGOS_491 chromosome, complete genome	4072902	2808104	2815276	4072902		Pseudomonas_phage(28.57%)	11	NA	NA
AYZ92283.1|2808104_2808737_-	adenylosuccinate synthase	NA	A0A2H4JDN1	uncultured_Caudovirales_phage	52.9	6.3e-51
AYZ92284.1|2809350_2809566_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92285.1|2809713_2810067_+	hypothetical protein	NA	NA	NA	NA	NA
AYZ92286.1|2810074_2810974_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	36.0	2.7e-47
AYZ92287.1|2811038_2811725_+	hypothetical protein	NA	NA	NA	NA	NA
AYZ93548.1|2811718_2811844_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92288.1|2811834_2812347_-	single-stranded DNA-binding protein	NA	I6NRL7	Burkholderia_virus	58.3	9.7e-42
AYZ92289.1|2812330_2812828_-	HNH endonuclease	NA	A0A290FZR9	Caldibacillus_phage	39.0	3.3e-18
AYZ92290.1|2812828_2813464_-	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	37.9	1.1e-21
AYZ92291.1|2813463_2814201_-	single-stranded DNA-binding protein	NA	B5WZW4	Pseudomonas_phage	72.2	3.0e-68
AYZ92292.1|2814208_2815276_-	hypothetical protein	NA	A0A1B0VN89	Pseudomonas_phage	39.8	1.0e-21
>prophage 2
CP033861	Alcaligenes faecalis strain FDAARGOS_491 chromosome, complete genome	4072902	2821672	2845503	4072902	tail,terminase	Pseudomonas_phage(31.58%)	35	NA	NA
AYZ92302.1|2821672_2822641_-	hypothetical protein	NA	Q8LTB7	Lactobacillus_phage	35.6	2.7e-37
AYZ92303.1|2822820_2823330_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92304.1|2823361_2823637_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92305.1|2823680_2823908_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92306.1|2823908_2824295_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92307.1|2824369_2824576_+	hypothetical protein	NA	NA	NA	NA	NA
AYZ92308.1|2824618_2824825_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92309.1|2824888_2825461_+	hypothetical protein	NA	J7I4J9	Pseudomonas_phage	45.6	1.4e-25
AYZ92310.1|2825447_2825873_+	recombinase	NA	NA	NA	NA	NA
AYZ92311.1|2825869_2826232_+	hypothetical protein	NA	A0A1B1IW31	uncultured_Mediterranean_phage	38.8	2.1e-11
AYZ92312.1|2826228_2827059_+	helix-turn-helix domain-containing protein	NA	Q8W6P0	Burkholderia_virus	52.2	4.6e-49
AYZ92313.1|2827060_2827714_+	hypothetical protein	NA	Q3HQZ7	Burkholderia_phage	55.4	1.2e-60
AYZ92314.1|2827710_2828046_+	DUF1064 domain-containing protein	NA	Q6JIF9	Burkholderia_virus	51.3	4.0e-20
AYZ92315.1|2828195_2828564_+	hypothetical protein	NA	NA	NA	NA	NA
AYZ92316.1|2828560_2829244_+	serine/threonine protein phosphatase	NA	A0A291L9W7	Bordetella_phage	58.7	1.4e-64
AYZ92317.1|2829240_2829546_+	hypothetical protein	NA	NA	NA	NA	NA
AYZ93549.1|2829681_2829966_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92318.1|2830286_2830793_+	hypothetical protein	NA	A0A2H4J1J5	uncultured_Caudovirales_phage	65.6	1.2e-39
AYZ92319.1|2830758_2832006_+|terminase	terminase	terminase	A0A2R3UAD4	Siphoviridae_environmental_samples	67.2	1.6e-162
AYZ93550.1|2832069_2833455_+	DUF4055 domain-containing protein	NA	A0A0S2SYJ5	Pseudomonas_phage	46.7	6.4e-104
AYZ92320.1|2833454_2834513_+	hypothetical protein	NA	A0A0S2SY77	Pseudomonas_phage	45.7	4.4e-73
AYZ92321.1|2834651_2835416_+	hypothetical protein	NA	A0A0H5AWD1	Pseudomonas_phage	66.7	8.7e-71
AYZ92322.1|2835424_2836381_+	Ig domain-containing protein	NA	A0A1B0VMF8	Pseudomonas_phage	65.8	4.0e-113
AYZ92323.1|2836429_2837452_+	hypothetical protein	NA	NA	NA	NA	NA
AYZ92324.1|2837448_2837931_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	38.2	8.6e-16
AYZ92325.1|2837927_2838305_+	hypothetical protein	NA	NA	NA	NA	NA
AYZ92326.1|2838304_2838754_+	hypothetical protein	NA	E7EKX0	Edwardsiella_phage	32.2	2.7e-19
AYZ92327.1|2838750_2839149_+	hypothetical protein	NA	G8C7Q2	Escherichia_phage	38.3	6.9e-11
AYZ92328.1|2839209_2839662_+	hypothetical protein	NA	Q3HQT6	Burkholderia_phage	37.7	6.8e-23
AYZ93551.1|2839792_2840284_+	hypothetical protein	NA	A0A249XSL1	Mycobacterium_phage	41.5	4.4e-15
AYZ92329.1|2840320_2840722_+	hypothetical protein	NA	NA	NA	NA	NA
AYZ92330.1|2840847_2841132_+	hypothetical protein	NA	NA	NA	NA	NA
AYZ92331.1|2841135_2841639_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92332.1|2841883_2842261_+	hypothetical protein	NA	NA	NA	NA	NA
AYZ92333.1|2842323_2845503_+|tail	phage tail tape measure protein	tail	H6V8Q4	Pseudomonas_phage	29.9	2.1e-54
>prophage 3
CP033861	Alcaligenes faecalis strain FDAARGOS_491 chromosome, complete genome	4072902	3211789	3220446	4072902	tRNA	uncultured_Mediterranean_phage(28.57%)	10	NA	NA
AYZ92646.1|3211789_3212614_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	44.4	2.7e-33
AYZ92647.1|3212610_3213351_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.4	1.2e-69
AYZ92648.1|3213465_3214107_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
AYZ92649.1|3214110_3215169_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	50.6	3.0e-93
AYZ92650.1|3215357_3216650_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	37.6	5.1e-71
AYZ93576.1|3216770_3217151_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	43.0	3.1e-13
AYZ92651.1|3217215_3217479_-	DUF2024 family protein	NA	NA	NA	NA	NA
AYZ92652.1|3217503_3218034_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AYZ92653.1|3218242_3218839_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	34.0	3.5e-19
AYZ92654.1|3218847_3220446_-	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	28.8	2.1e-58
>prophage 4
CP033861	Alcaligenes faecalis strain FDAARGOS_491 chromosome, complete genome	4072902	3339619	3353251	4072902	head,terminase,portal,tail,capsid,protease	Pseudomonas_phage(25.0%)	15	NA	NA
AYZ92763.1|3339619_3342985_-|tail	phage tail tape measure protein	tail	A0A2D1GNQ1	Pseudomonas_phage	40.8	3.0e-38
AYZ92764.1|3342990_3343362_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92765.1|3343361_3343772_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92766.1|3343796_3344726_-	hypothetical protein	NA	G8CLB2	Synechococcus_phage	36.8	1.9e-48
AYZ92767.1|3344729_3344933_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92768.1|3344941_3345361_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92769.1|3345357_3345684_-	hypothetical protein	NA	NA	NA	NA	NA
AYZ92770.1|3345685_3346684_-|capsid	major capsid protein	capsid	A0A2H4J890	uncultured_Caudovirales_phage	60.6	1.5e-110
AYZ92771.1|3346747_3347101_-|head	head decoration protein	head	NA	NA	NA	NA
AYZ92772.1|3347115_3348189_-|protease	Clp protease ClpP	protease	A0A0E3M0W7	Verrucomicrobia_phage	44.9	2.0e-36
AYZ93582.1|3348209_3349682_-|portal	phage portal protein	portal	A0A2H4JFL5	uncultured_Caudovirales_phage	46.7	5.5e-106
AYZ92773.1|3349717_3349927_-	hypothetical protein	NA	A0A219Y8X9	Aeromonas_phage	50.0	2.0e-06
AYZ92774.1|3349926_3351984_-|terminase	terminase	terminase	K7PGW7	Enterobacteria_phage	37.8	1.0e-110
AYZ92775.1|3351983_3352475_-	DNA packaging Nu1	NA	NA	NA	NA	NA
AYZ93583.1|3352471_3353251_-	hypothetical protein	NA	A0A1B0Z000	Pseudomonas_phage	38.2	2.5e-33
