assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003814345.1_ASM381434v1	CP032566	Yersinia pseudotuberculosis strain IP2666pIB1 chromosome, complete genome	1	1557340-1557451	1	CRISPRCasFinder	no		DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Orphan	TTTGAAGAAAATTCCTAATGGTTAATTAAT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA|234aa|up_5|CP032566.1_1549534_1550236_-,NA	NA|371aa|up_9|CP032566.1_1544043_1545156_+	PRK10760, PRK10760, murein hydrolase B; Provisional	NA|201aa|up_8|CP032566.1_1546397_1547000_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|161aa|up_7|CP032566.1_1547372_1547855_-	COG5435, COG5435, Uncharacterized conserved protein [Function unknown]	NA|561aa|up_6|CP032566.1_1547851_1549534_-	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|234aa|up_5|CP032566.1_1549534_1550236_-	NA	NA|446aa|up_4|CP032566.1_1550232_1551570_-	pfam11397, GlcNAc, Glycosyltransferase (GlcNAc)	NA|344aa|up_3|CP032566.1_1551609_1552641_-	pfam00419, Fimbrial, Fimbrial protein	NA|398aa|up_2|CP032566.1_1552647_1553841_-	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|342aa|up_1|CP032566.1_1553939_1554965_-	COG3520, COG3520, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|627aa|up_0|CP032566.1_1554964_1556845_-	COG3519, COG3519, Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]	NA|886aa|down_0|CP032566.1_1557628_1560286_+	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	NA|182aa|down_1|CP032566.1_1560496_1561042_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|260aa|down_2|CP032566.1_1561180_1561960_+	PRK09926, PRK09926, fimbrial chaperone	NA|891aa|down_3|CP032566.1_1562087_1564760_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|203aa|down_4|CP032566.1_1564744_1565353_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|175aa|down_5|CP032566.1_1565458_1565983_+	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|501aa|down_6|CP032566.1_1566006_1567509_+	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|162aa|down_7|CP032566.1_1567841_1568327_+	COG3157, Hcp, Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion,    and vesicular transport]	NA|180aa|down_8|CP032566.1_1568600_1569140_+	COG3521, COG3521, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|450aa|down_9|CP032566.1_1569143_1570493_+	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
GCA_003814345.1_ASM381434v1	CP032566	Yersinia pseudotuberculosis strain IP2666pIB1 chromosome, complete genome	2	1750673-1753404	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Type I-F	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	44,45,45	45	TypeI-F	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA|372aa|up_3|CP032566.1_1746104_1747220_+,NA|425aa|up_2|CP032566.1_1747258_1748533_+,NA|63aa|up_1|CP032566.1_1748713_1748902_-,NA|70aa|down_9|CP032566.1_1765203_1765413_+	NA|347aa|up_9|CP032566.1_1739407_1740448_-	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|429aa|up_8|CP032566.1_1740719_1742006_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|292aa|up_7|CP032566.1_1742114_1742990_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|up_6|CP032566.1_1742990_1743815_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|352aa|up_5|CP032566.1_1743961_1745017_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|313aa|up_4|CP032566.1_1745043_1745982_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|372aa|up_3|CP032566.1_1746104_1747220_+	NA	NA|425aa|up_2|CP032566.1_1747258_1748533_+	NA	NA|63aa|up_1|CP032566.1_1748713_1748902_-	NA	NA|416aa|up_0|CP032566.1_1749090_1750338_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	cas1|329aa|down_0|CP032566.1_1753757_1754744_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1096aa|down_1|CP032566.1_1754740_1758028_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|449aa|down_2|CP032566.1_1758183_1759530_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|317aa|down_3|CP032566.1_1759526_1760477_+	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_4|CP032566.1_1760494_1761499_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|CP032566.1_1761509_1762064_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|340aa|down_6|CP032566.1_1762141_1763161_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|168aa|down_7|CP032566.1_1763171_1763675_-	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|453aa|down_8|CP032566.1_1763721_1765080_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|70aa|down_9|CP032566.1_1765203_1765413_+	NA
GCA_003814345.1_ASM381434v1	CP032566	Yersinia pseudotuberculosis strain IP2666pIB1 chromosome, complete genome	3	2681886-2683654	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTNCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	29,29,28	29	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA|47aa|up_9|CP032566.1_2668464_2668605_-,NA|62aa|down_0|CP032566.1_2683687_2683873_+,NA|72aa|down_2|CP032566.1_2685529_2685745_-,NA|16aa|down_7|CP032566.1_2691973_2692021_+	NA|47aa|up_9|CP032566.1_2668464_2668605_-	NA	NA|426aa|up_8|CP032566.1_2668716_2669994_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_7|CP032566.1_2670025_2670868_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_6|CP032566.1_2670915_2671656_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|142aa|up_5|CP032566.1_2672118_2672544_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|467aa|up_4|CP032566.1_2672552_2673953_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1076aa|up_3|CP032566.1_2674896_2678124_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|106aa|up_2|CP032566.1_2678267_2678585_-	PRK05423, PRK05423, DUF496 family protein	NA|380aa|up_1|CP032566.1_2679018_2680158_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|CP032566.1_2680420_2681851_+	PRK11779, sbcB, exonuclease I; Provisional	NA|62aa|down_0|CP032566.1_2683687_2683873_+	NA	NA|464aa|down_1|CP032566.1_2684148_2685540_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|72aa|down_2|CP032566.1_2685529_2685745_-	NA	NA|364aa|down_3|CP032566.1_2685998_2687090_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|519aa|down_4|CP032566.1_2687375_2688932_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_5|CP032566.1_2688928_2689924_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|276aa|down_6|CP032566.1_2690770_2691598_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_7|CP032566.1_2691973_2692021_+	NA	NA|300aa|down_8|CP032566.1_2692311_2693211_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|444aa|down_9|CP032566.1_2693214_2694546_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
GCA_003814345.1_ASM381434v1	CP032566	Yersinia pseudotuberculosis strain IP2666pIB1 chromosome, complete genome	4	3279523-3279606	4	CRISPRCasFinder	no		DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Orphan	TAAGCTGCCTGTACGGCAGTGAAC	24	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA,NA|281aa|down_3|CP032566.1_3289643_3290486_+,NA|84aa|down_6|CP032566.1_3292135_3292387_-,NA|80aa|down_7|CP032566.1_3292425_3292665_-,NA|41aa|down_9|CP032566.1_3295514_3295637_+	NA|307aa|up_9|CP032566.1_3265560_3266481_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|657aa|up_8|CP032566.1_3266687_3268658_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|378aa|up_7|CP032566.1_3268706_3269840_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|343aa|up_6|CP032566.1_3269863_3270892_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|516aa|up_5|CP032566.1_3270903_3272451_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|310aa|up_4|CP032566.1_3272499_3273429_-	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|329aa|up_3|CP032566.1_3273536_3274523_-	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|649aa|up_2|CP032566.1_3274816_3276763_-	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|509aa|up_1|CP032566.1_3276776_3278303_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|285aa|up_0|CP032566.1_3278660_3279515_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|2005aa|down_0|CP032566.1_3280078_3286093_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|788aa|down_1|CP032566.1_3286149_3288513_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|82aa|down_2|CP032566.1_3288725_3288971_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|281aa|down_3|CP032566.1_3289643_3290486_+	NA	NA|134aa|down_4|CP032566.1_3290493_3290895_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|160aa|down_5|CP032566.1_3291632_3292112_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|84aa|down_6|CP032566.1_3292135_3292387_-	NA	NA|80aa|down_7|CP032566.1_3292425_3292665_-	NA	NA|639aa|down_8|CP032566.1_3293474_3295391_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|41aa|down_9|CP032566.1_3295514_3295637_+	NA
GCA_003814345.1_ASM381434v1	CP032566	Yersinia pseudotuberculosis strain IP2666pIB1 chromosome, complete genome	5	4448379-4448490	5	CRISPRCasFinder	no		DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Orphan	AAAGCACATTTGAGCAGCGAGTGAAG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA,NA|64aa|down_0|CP032566.1_4448492_4448684_+,NA|48aa|down_8|CP032566.1_4458345_4458489_+	NA|268aa|up_9|CP032566.1_4431858_4432662_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|443aa|up_8|CP032566.1_4432726_4434055_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|603aa|up_7|CP032566.1_4434130_4435939_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|206aa|up_6|CP032566.1_4436104_4436722_-	pfam06438, HasA, Heme-binding protein A (HasA)	NA|784aa|up_5|CP032566.1_4436943_4439295_-	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|458aa|up_4|CP032566.1_4440033_4441407_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|258aa|up_3|CP032566.1_4441573_4442347_-	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|335aa|up_2|CP032566.1_4442529_4443534_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|390aa|up_1|CP032566.1_4443778_4444948_+	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|879aa|up_0|CP032566.1_4445321_4447958_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|64aa|down_0|CP032566.1_4448492_4448684_+	NA	NA|295aa|down_1|CP032566.1_4448835_4449720_-	PRK09432, metF, methylenetetrahydrofolate reductase	NA|812aa|down_2|CP032566.1_4449952_4452388_-	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional	NA|387aa|down_3|CP032566.1_4452390_4453551_-	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional	NA|106aa|down_4|CP032566.1_4453928_4454246_+	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|152aa|down_5|CP032566.1_4454594_4455050_+	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|72aa|down_6|CP032566.1_4455592_4455808_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|733aa|down_7|CP032566.1_4456060_4458259_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|48aa|down_8|CP032566.1_4458345_4458489_+	NA	NA|343aa|down_9|CP032566.1_4458611_4459640_+	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional
