The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033907	Streptococcus pyogenes strain Duke-Large chromosome, complete genome	1903852	335937	341971	1903852		Streptococcus_phage(100.0%)	9	NA	NA
AZA34742.1|335937_336573_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
AZA34743.1|336590_337466_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	1.8e-72
AZA34744.1|337484_337724_+	Tpl protein	NA	NA	NA	NA	NA
AZA34745.1|338127_338451_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
AZA34746.1|338455_339319_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	74.7	1.5e-114
AZA34747.1|339345_339738_+	hypothetical protein	NA	NA	NA	NA	NA
AZA34748.1|339784_340414_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AZA34749.1|340713_341070_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	66.7	2.8e-40
AZA34750.1|341143_341971_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.5	2.2e-128
>prophage 2
CP033907	Streptococcus pyogenes strain Duke-Large chromosome, complete genome	1903852	351569	400387	1903852	bacteriocin,tRNA,transposase,protease	Mycobacterium_phage(14.29%)	54	NA	NA
AZA34757.1|351569_353570_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	35.3	3.5e-87
AZA34758.1|354064_355078_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.7	1.9e-97
AZA34759.1|355081_355516_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	R4JF54	Bacillus_phage	37.5	1.2e-11
AZA34760.1|355535_357716_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.1	3.6e-170
AZA34761.1|357921_358674_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
AZA34762.1|359132_359627_+	hypothetical protein	NA	NA	NA	NA	NA
AZA34763.1|359864_360125_+	hypothetical protein	NA	NA	NA	NA	NA
AZA34764.1|360533_360785_+	hypothetical protein	NA	NA	NA	NA	NA
AZA34765.1|360878_361586_-	hypothetical protein	NA	NA	NA	NA	NA
AZA34766.1|363765_364002_+	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
AZA34767.1|363994_364693_+	3-oxoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	24.4	2.3e-09
AZA34768.1|364768_365728_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZA34769.1|366060_367398_+	MFS transporter	NA	NA	NA	NA	NA
AZA34770.1|367520_368903_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L4K9	Tupanvirus	36.4	1.3e-32
AZA34771.1|368933_369488_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZA34772.1|369487_369739_+	hypothetical protein	NA	NA	NA	NA	NA
AZA34773.1|369758_370454_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
AZA34774.1|370604_370946_+	hypothetical protein	NA	NA	NA	NA	NA
AZA34775.1|371042_371690_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZA34776.1|371835_372768_+	metal ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
AZA34777.1|372831_373557_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.1e-17
AZA34778.1|373557_374412_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZA34779.1|374559_375366_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
AZA34780.1|375582_377988_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
AZA34781.1|378057_378411_-	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
AZA34782.1|378654_379080_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZA34783.1|379185_379875_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZA34784.1|380196_380925_+	UMP kinase	NA	NA	NA	NA	NA
AZA34785.1|380953_381511_+	ribosome recycling factor	NA	NA	NA	NA	NA
AZA34786.1|381619_382477_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
AZA34787.1|382549_383059_+	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZA34788.1|383055_383271_+	YozE family protein	NA	NA	NA	NA	NA
AZA34789.1|383426_384608_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.6e-16
AZA34790.1|384923_386696_+	oleate hydratase	NA	NA	NA	NA	NA
AZA34791.1|386854_387874_+	PhoH family protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
AZA34792.1|387951_388527_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
AZA34793.1|388685_389183_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AZA34794.1|389163_389571_+	diacylglycerol kinase	NA	NA	NA	NA	NA
AZA34795.1|389690_390587_+	GTPase Era	NA	NA	NA	NA	NA
AZA34796.1|390606_391083_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AZA34797.1|391387_391642_-	hypothetical protein	NA	NA	NA	NA	NA
AZA34798.1|392243_392690_-	ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	35.1	2.0e-11
AZA34799.1|392912_393623_-	hypothetical protein	NA	NA	NA	NA	NA
AZA34800.1|393727_393964_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZA34801.1|394261_394486_+|bacteriocin	ComC/BlpC family peptide pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
AZA36212.1|394960_395245_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZA36213.1|395855_396083_+|bacteriocin	ComC/BlpC family peptide pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
AZA34802.1|396131_396449_+	role in replication	NA	NA	NA	NA	NA
AZA34803.1|396514_396796_+|transposase	transposase	transposase	NA	NA	NA	NA
AZA34804.1|396828_397182_+	hypothetical protein	NA	A0A1B1P773	Bacillus_phage	36.2	9.1e-07
AZA34805.1|397200_397542_+|transposase	transposase	transposase	U5P429	Shigella_phage	45.0	6.3e-21
AZA36214.1|397554_397653_+	hypothetical protein	NA	NA	NA	NA	NA
AZA34806.1|398779_400114_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
AZA34807.1|400261_400387_-|bacteriocin	ComC/BlpC family peptide pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 3
CP033907	Streptococcus pyogenes strain Duke-Large chromosome, complete genome	1903852	531342	690462	1903852	bacteriocin,head,holin,protease,capsid,terminase,integrase,tRNA,portal,tail	Streptococcus_phage(44.54%)	176	565377:565394	618608:618625
AZA34933.1|531342_532467_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AZA34934.1|532535_533633_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZA34935.1|533652_534345_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	35.6	1.0e-30
AZA34936.1|534328_535267_+	ABC transporter permease	NA	NA	NA	NA	NA
AZA34937.1|535576_536212_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	62.9	7.2e-79
AZA34938.1|536443_537208_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
AZA34939.1|537315_539817_+	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	48.4	3.0e-205
AZA34940.1|540152_541346_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZA34941.1|541366_542713_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.8	1.4e-55
AZA34942.1|543126_544017_+	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
AZA34943.1|544013_544991_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	74.2	1.2e-138
AZA34944.1|544987_545899_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.4	2.9e-105
AZA34945.1|546095_547511_-	recombinase family protein	NA	A5GZ62	Lactococcus_phage	47.2	1.4e-109
AZA34946.1|547661_548264_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	41.9	4.3e-33
AZA34947.1|548229_548979_-	helix-turn-helix domain-containing protein	NA	A0A097PBE5	Streptococcus_pyogenes_phage	63.5	2.9e-79
AZA34948.1|549365_549524_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	88.5	7.1e-20
AZA34949.1|549622_550264_-	hypothetical protein	NA	J7KJ31	Streptococcus_phage	100.0	1.5e-116
AZA34950.1|550356_550563_+	XRE family transcriptional regulator	NA	A0A1X9I5S3	Streptococcus_phage	64.7	1.1e-17
AZA34951.1|550604_550850_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	93.8	1.6e-34
AZA34952.1|550808_551018_-	hypothetical protein	NA	NA	NA	NA	NA
AZA34953.1|551180_551411_-	hypothetical protein	NA	NA	NA	NA	NA
AZA34954.1|551555_551741_+	XRE family transcriptional regulator	NA	J7KH19	Streptococcus_phage	68.9	3.5e-18
AZA34955.1|551813_552059_+	hypothetical protein	NA	NA	NA	NA	NA
AZA34956.1|552205_552520_+	XRE family transcriptional regulator	NA	A0A1P8VVN6	Streptococcus_phage	99.0	4.8e-52
AZA34957.1|552746_553229_+	siphovirus Gp157 family protein	NA	A0A1P8VVS5	Streptococcus_phage	100.0	1.2e-78
AZA34958.1|553229_553910_+	AAA family ATPase	NA	A0A1P8VVS4	Streptococcus_phage	100.0	1.6e-129
AZA34959.1|554011_555241_+	DEAD/DEAH box helicase	NA	J7KK96	Streptococcus_phage	95.1	7.3e-229
AZA34960.1|555256_555715_+	DUF669 domain-containing protein	NA	A0A1P8VVN0	Streptococcus_phage	94.1	2.2e-77
AZA34961.1|555717_556530_+	hypothetical protein	NA	J7KH42	Streptococcus_phage	96.3	1.6e-152
AZA34962.1|556519_557995_+	DNA primase	NA	A0A1P8VVM0	Streptococcus_phage	84.2	2.4e-242
AZA34963.1|558256_558670_+	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	51.1	1.6e-15
AZA34964.1|558666_558987_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	95.3	1.9e-51
AZA34965.1|558970_559327_+	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	87.3	7.7e-54
AZA34966.1|559451_559733_+	DUF1599 domain-containing protein	NA	J7KDH9	Streptococcus_phage	75.0	2.5e-31
AZA34967.1|559725_559911_+	hypothetical protein	NA	A3F626	Streptococcus_phage	94.7	1.7e-12
AZA34968.1|559907_560177_+	hypothetical protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
AZA34969.1|560186_560600_+	hypothetical protein	NA	Q938M1	Temperate_phage	65.2	6.4e-36
AZA34970.1|560596_560881_+	hypothetical protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
AZA34971.1|560884_561367_+	class I SAM-dependent methyltransferase	NA	A0A097PAU8	Streptococcus_pyogenes_phage	98.8	9.6e-92
AZA34972.1|561332_562121_+	site-specific DNA-methyltransferase	NA	A0A1S5SE41	Streptococcus_phage	92.3	5.7e-134
AZA34973.1|562168_562894_+	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	44.8	3.1e-25
AZA34974.1|563088_563385_+	hypothetical protein	NA	A0A097PAV3	Streptococcus_pyogenes_phage	98.5	1.4e-32
AZA34975.1|563336_563774_+	DUF1492 domain-containing protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	97.9	6.7e-76
AZA34976.1|564356_565286_+	hypothetical protein	NA	A0A126HAU2	Lactococcus_phage	71.8	4.9e-100
565377:565394	attL	TTTTTATTATGTAAAAAA	NA	NA	NA	NA
AZA34977.1|565412_565790_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
AZA34978.1|565841_566027_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
AZA34979.1|566262_566601_+	HNH endonuclease	NA	J7KH36	Streptococcus_phage	90.7	3.0e-55
AZA34980.1|566771_567239_+|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	98.7	3.9e-82
AZA34981.1|567241_567472_+	hypothetical protein	NA	NA	NA	NA	NA
AZA36217.1|567475_569230_+|terminase	terminase large subunit	terminase	J7KKD1	Streptococcus_phage	96.1	0.0e+00
AZA34982.1|569389_569614_+	hypothetical protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
AZA34983.1|569647_570868_+|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	6.9e-187
AZA34984.1|570845_571511_+|protease	Clp protease ClpP	protease	M1Q115	Streptococcus_phage	78.1	3.5e-92
AZA34985.1|571535_572723_+|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	74.7	1.3e-158
AZA34986.1|572867_573170_+	DNA packaging protein, QLRG family	NA	J7KC36	Streptococcus_phage	88.8	1.3e-41
AZA34987.1|573166_573514_+|head,tail	head-tail adaptor protein	head,tail	J7KJ42	Streptococcus_phage	88.2	2.9e-50
AZA34988.1|573510_573888_+	HK97 gp10 family phage protein	NA	J7KDM3	Streptococcus_phage	72.8	1.8e-45
AZA34989.1|573884_574310_+	hypothetical protein	NA	J7KBZ9	Streptococcus_phage	84.4	7.2e-67
AZA34990.1|574325_574934_+|tail	phage tail protein	tail	J7KKC8	Streptococcus_phage	71.9	6.7e-74
AZA34991.1|574986_575313_+	hypothetical protein	NA	J7KK85	Streptococcus_phage	75.0	8.3e-39
AZA34992.1|575522_579446_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	48.5	1.9e-238
AZA34993.1|579445_580153_+|tail	phage tail protein	tail	Q938K2	Temperate_phage	71.9	6.8e-94
AZA34994.1|580149_582297_+	peptidase	NA	Q938K1	Temperate_phage	94.4	0.0e+00
AZA34995.1|582293_583508_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
AZA34996.1|583509_583824_+	hypothetical protein	NA	NA	NA	NA	NA
AZA34997.1|583834_585724_+	hyaluronidase	NA	Q938J9	Temperate_phage	75.8	4.5e-193
AZA34998.1|585735_586167_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
AZA34999.1|586169_586787_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
AZA35000.1|586796_587072_+	hypothetical protein	NA	A7J2B2	Streptococcus_phage	100.0	2.6e-41
AZA35001.1|587068_587296_+|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	5.8e-31
AZA35002.1|587411_588617_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	83.3	1.6e-204
AZA35003.1|588684_589392_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
AZA35004.1|589502_590261_-	DNAse	NA	NA	NA	NA	NA
AZA35005.1|590572_591991_+	C69 family dipeptidase	NA	NA	NA	NA	NA
AZA35006.1|592142_593690_+	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
AZA35007.1|595407_596130_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZA35008.1|596149_597349_+	SIS domain-containing protein	NA	NA	NA	NA	NA
AZA35009.1|597446_597707_-	50S ribosomal protein L31 type B	NA	NA	NA	NA	NA
AZA35010.1|597821_598763_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
AZA35011.1|599156_599606_+	flavodoxin	NA	NA	NA	NA	NA
AZA35012.1|599781_600066_+	chorismate mutase	NA	NA	NA	NA	NA
AZA35013.1|600058_601321_+	voltage-gated chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.0	1.1e-94
AZA35014.1|601435_601783_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZA35015.1|602145_603222_-|integrase	site-specific integrase	integrase	Q0R5B4	Streptococcus_phage	41.2	7.5e-68
AZA35016.1|603340_603862_-	hypothetical protein	NA	Q938N8	Temperate_phage	97.7	7.5e-66
AZA35017.1|603872_604250_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1P8VVK5	Streptococcus_phage	77.6	1.6e-54
AZA35018.1|604233_604593_-	XRE family transcriptional regulator	NA	A0A1P8VVN3	Streptococcus_phage	95.0	1.7e-56
AZA35019.1|604780_604999_+	XRE family transcriptional regulator	NA	A0A1P8VVR5	Streptococcus_phage	97.2	5.9e-33
AZA35020.1|605098_605329_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35021.1|605465_605684_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35022.1|605685_605928_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35023.1|605911_607231_+	chromosome segregation protein SMC	NA	A0A097BY67	Enterococcus_phage	63.7	3.5e-152
AZA35024.1|607245_608328_+	hypothetical protein	NA	A0A0K2CZH1	Paenibacillus_phage	53.3	2.5e-103
AZA35025.1|608522_609116_+	hypothetical protein	NA	A0A097BY29	Enterococcus_phage	43.5	1.7e-29
AZA35026.1|609115_610699_+	DEAD/DEAH box helicase	NA	A0A097BY72	Enterococcus_phage	77.8	2.0e-234
AZA35027.1|610711_610906_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35028.1|610928_613172_+	DNA primase	NA	Q5YA88	Bacillus_phage	63.7	4.7e-282
AZA35029.1|613463_613646_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35030.1|613638_614034_+	RusA family crossover junction endodeoxyribonuclease	NA	Q5YA86	Bacillus_phage	58.8	1.8e-40
AZA35031.1|614030_614255_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35032.1|614257_614443_+	hypothetical protein	NA	A3F626	Streptococcus_phage	82.9	6.6e-09
AZA35033.1|614439_614691_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35034.1|614674_615079_+	hypothetical protein	NA	A3F627	Streptococcus_phage	65.2	1.6e-39
AZA35035.1|615075_615360_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	89.4	1.4e-37
AZA35036.1|615361_615994_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	2.3e-85
AZA35037.1|615996_616707_+	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	46.2	3.0e-25
AZA35038.1|616703_617075_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35039.1|617342_617780_+	DUF1492 domain-containing protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	99.3	1.4e-76
AZA36218.1|617843_618062_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35040.1|618136_618400_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35041.1|618374_618560_-	hypothetical protein	NA	NA	NA	NA	NA
AZA35042.1|618636_619155_+	chromosome partitioning protein ParB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
618608:618625	attR	TTTTTATTATGTAAAAAA	NA	NA	NA	NA
AZA35043.1|619133_619811_+	hypothetical protein	NA	Q938L6	Temperate_phage	100.0	8.7e-131
AZA36219.1|619933_620203_+	hypothetical protein	NA	B5SP24	Lactococcus_phage	51.1	2.8e-16
AZA35044.1|620263_620641_+	ASCH domain-containing protein	NA	Q938L5	Temperate_phage	100.0	1.7e-67
AZA35045.1|620691_621165_+	hypothetical protein	NA	Q938L4	Temperate_phage	98.7	7.3e-76
AZA35046.1|621247_622459_+|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
AZA35047.1|622472_623975_+|portal	phage portal protein	portal	Q938L2	Temperate_phage	100.0	5.4e-282
AZA35048.1|623979_625458_+|capsid	capsid protein	capsid	Q938L1	Temperate_phage	100.0	8.2e-275
AZA35049.1|625429_625669_+	hypothetical protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
AZA35050.1|625730_625997_+	hypothetical protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
AZA35051.1|626122_626737_+	hypothetical protein	NA	Q938K8	Temperate_phage	100.0	1.3e-96
AZA35052.1|626740_627559_+|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	100.0	4.0e-146
AZA35053.1|627612_628029_+	hypothetical protein	NA	Q938K7	Temperate_phage	100.0	1.1e-56
AZA35054.1|628018_628351_+|capsid	minor capsid protein	capsid	Q79S86	Temperate_phage	100.0	9.6e-59
AZA35055.1|628350_628707_+|capsid	capsid protein	capsid	Q79S88	Temperate_phage	100.0	4.5e-62
AZA35056.1|628703_629099_+|capsid	capsid protein	capsid	Q79S87	Temperate_phage	100.0	6.1e-68
AZA35057.1|629102_629588_+|tail	phage tail protein	tail	Q938K6	Temperate_phage	100.0	1.6e-86
AZA35058.1|629626_630061_+	hypothetical protein	NA	Q938K5	Temperate_phage	100.0	2.6e-72
AZA35059.1|630064_630646_+	hypothetical protein	NA	Q938K4	Temperate_phage	99.5	4.9e-106
AZA35060.1|630635_633896_+	tape measure domain-containing protein	NA	Q938K3	Temperate_phage	99.4	0.0e+00
AZA35061.1|633892_634609_+|tail	phage tail protein	tail	Q938K2	Temperate_phage	100.0	2.9e-137
AZA35062.1|634605_636753_+	peptidase	NA	Q938K1	Temperate_phage	95.5	0.0e+00
AZA35063.1|636749_637964_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
AZA35064.1|637965_638280_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35065.1|638290_640180_+	hyaluronidase	NA	Q938J9	Temperate_phage	75.6	1.4e-189
AZA35066.1|640191_640620_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
AZA35067.1|640622_641255_+	hypothetical protein	NA	Q938J7	Temperate_phage	49.5	2.0e-44
AZA35068.1|641266_641539_+	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
AZA35069.1|641535_641763_+|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	7.6e-31
AZA35070.1|641878_643087_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	87.3	1.1e-213
AZA35071.1|643196_644183_-	deoxyribonuclease	NA	A7J2B8	Streptococcus_phage	99.7	5.2e-169
AZA35072.1|644415_644595_+	Paratox	NA	A3F673	Streptococcus_phage	77.6	3.4e-18
AZA35073.1|645450_646011_+	HAD family hydrolase	NA	NA	NA	NA	NA
AZA35074.1|646011_647964_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	46.3	6.8e-144
AZA35075.1|648331_650056_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
AZA35076.1|650187_650646_-	DUF1694 domain-containing protein	NA	W6LLD2	Streptococcus_phage	39.1	1.8e-18
AZA35077.1|650872_652180_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	96.6	1.2e-240
AZA36220.1|656007_660330_+	DUF1542 domain-containing protein	NA	NA	NA	NA	NA
AZA35078.1|661195_661357_+|bacteriocin	streptolysin S family bacteriocin	bacteriocin	NA	NA	NA	NA
AZA35079.1|661578_662529_+	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA	NA
AZA35080.1|662525_663584_+	streptolysin associated protein SagC	NA	NA	NA	NA	NA
AZA35081.1|663603_664962_+	streptolysin associated protein SagD	NA	NA	NA	NA	NA
AZA35082.1|664936_665608_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZA35083.1|665604_666288_+	streptolysin associated protein SagF	NA	NA	NA	NA	NA
AZA35084.1|666310_667234_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
AZA35085.1|667242_668370_+	ABC transporter permease	NA	NA	NA	NA	NA
AZA35086.1|668366_669485_+	ABC transporter permease	NA	NA	NA	NA	NA
AZA35087.1|669596_669815_-	hypothetical protein	NA	NA	NA	NA	NA
AZA35088.1|670056_672789_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AZA35089.1|673066_673567_+	queuosine transporter QueT	NA	E7DN70	Pneumococcus_phage	31.8	5.4e-05
AZA35090.1|673759_675718_+	DNA ligase (NAD(+)) LigA	NA	A0A0K2QQN8	Ralstonia_phage	34.9	5.8e-103
AZA35091.1|675731_676754_+	YegS/Rv2252/BmrU family lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	6.1e-19
AZA35092.1|677161_677359_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZA35093.1|677393_678110_+	ATP synthase subunit A	NA	NA	NA	NA	NA
AZA35094.1|678127_678622_+	ATP synthase subunit B	NA	NA	NA	NA	NA
AZA35095.1|678621_679158_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
AZA35096.1|679173_680682_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZA35097.1|680697_681573_+	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZA35098.1|681734_683141_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
AZA35099.1|683153_683570_+	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZA35100.1|683835_684093_+	DUF1146 domain-containing protein	NA	NA	NA	NA	NA
AZA35101.1|684157_685429_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZA35102.1|685432_685621_+	DNA-directed RNA polymerase subunit beta	NA	NA	NA	NA	NA
AZA35103.1|686803_687847_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.6e-30
AZA35104.1|688056_690462_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 4
CP033907	Streptococcus pyogenes strain Duke-Large chromosome, complete genome	1903852	727195	737799	1903852		Streptococcus_phage(57.14%)	9	NA	NA
AZA35137.1|727195_729406_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
AZA35138.1|729513_730677_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
AZA35139.1|730673_731360_+	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
AZA35140.1|731453_732620_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
AZA35141.1|732680_733022_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	5.9e-19
AZA35142.1|733243_734596_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
AZA35143.1|734683_735952_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZA35144.1|735981_736422_-	hypothetical protein	NA	NA	NA	NA	NA
AZA35145.1|736656_737799_+	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.1e-24
>prophage 5
CP033907	Streptococcus pyogenes strain Duke-Large chromosome, complete genome	1903852	798818	867048	1903852	holin,protease,capsid,integrase,tRNA,tail	Streptococcus_pyogenes_phage(52.63%)	72	846928:846973	867216:867261
AZA35197.1|798818_800048_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	7.8e-138
AZA35198.1|800057_800657_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
AZA35199.1|801606_803706_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.2	5.1e-121
AZA35200.1|804083_804767_+	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
AZA35201.1|804843_806055_+	phosphopentomutase	NA	NA	NA	NA	NA
AZA36228.1|806073_806514_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	54.5	4.4e-35
AZA35202.1|806497_807307_+	purine-nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	42.2	5.1e-53
AZA35203.1|807969_808683_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
AZA35204.1|808675_809464_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
AZA35205.1|809543_810449_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZA35206.1|810670_811207_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35207.1|811483_812176_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
AZA35208.1|812233_812863_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
AZA35209.1|813059_814514_+	amidase	NA	NA	NA	NA	NA
AZA35210.1|814595_815495_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZA35211.1|815523_816174_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZA35212.1|816306_816960_+	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	39.7	1.5e-39
AZA35213.1|817091_818360_+	dihydroorotase	NA	NA	NA	NA	NA
AZA35214.1|818417_819059_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
AZA35215.1|819190_821143_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.0	7.3e-122
AZA35216.1|821233_823693_+	DNA topoisomerase 4 subunit A	NA	G3M9Z5	Bacillus_virus	33.1	1.4e-98
AZA35217.1|823770_824838_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AZA35218.1|826456_826687_+	DUF2969 domain-containing protein	NA	NA	NA	NA	NA
AZA35219.1|827075_828281_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZA35220.1|828828_829131_-	hypothetical protein	NA	NA	NA	NA	NA
AZA35221.1|829332_830319_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
AZA35222.1|830389_830581_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35223.1|830629_831049_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZA35224.1|831285_832194_+	TDT family transporter	NA	NA	NA	NA	NA
AZA35225.1|832311_832488_-	DUF3042 family protein	NA	NA	NA	NA	NA
AZA35226.1|832621_833521_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZA36229.1|833593_834832_+	GTPase HflX	NA	NA	NA	NA	NA
AZA35227.1|834824_835460_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZA35228.1|835474_836404_+	ribonuclease Z	NA	NA	NA	NA	NA
AZA35229.1|836403_837168_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZA35230.1|837164_839375_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.0	1.5e-70
AZA35231.1|839525_840044_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.4	3.9e-30
AZA35232.1|840124_840808_+	DnaD domain protein	NA	Q938N2	Temperate_phage	36.8	2.2e-09
AZA35233.1|840804_841461_+	endonuclease III	NA	NA	NA	NA	NA
AZA35234.1|841532_842219_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AZA35235.1|842208_842997_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZA35236.1|843036_844143_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZA35237.1|844200_845070_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
AZA35238.1|845069_845663_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
AZA35239.1|845906_846947_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
846928:846973	attL	CTCAAGAAGTGATTAAATAAAACATTAAAGAGCCTTGTCATATCAA	NA	NA	NA	NA
AZA35240.1|847029_847965_-|integrase	site-specific integrase	integrase	A1EAB7	Streptococcus_phage	53.4	3.2e-91
AZA35241.1|848111_848432_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	100.0	2.0e-53
AZA35242.1|848415_848772_+	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	100.0	5.0e-61
AZA35243.1|848768_849020_+	hypothetical protein	NA	A0A1P8VVV4	Streptococcus_phage	100.0	4.3e-43
AZA35244.1|849256_850147_+|capsid	phage capsid protein	capsid	A0A097PAW2	Streptococcus_pyogenes_phage	99.4	8.6e-86
AZA35245.1|850158_850452_+	hypothetical protein	NA	A0A097PBF3	Streptococcus_pyogenes_phage	99.0	1.3e-46
AZA35246.1|850465_850810_+	hypothetical protein	NA	A0A097PAS2	Streptococcus_pyogenes_phage	98.2	5.7e-54
AZA35247.1|850806_851118_+	hypothetical protein	NA	A0A097PAW7	Streptococcus_pyogenes_phage	94.2	4.6e-47
AZA35248.1|851114_851510_+	hypothetical protein	NA	A0A097PAT9	Streptococcus_pyogenes_phage	93.0	1.8e-56
AZA35249.1|851511_851922_+	DUF5072 domain-containing protein	NA	A0A097PAW5	Streptococcus_pyogenes_phage	99.3	1.8e-70
AZA35250.1|851933_852191_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	89.0	5.2e-28
AZA35251.1|852203_852494_+	hypothetical protein	NA	A0A097PAS6	Streptococcus_pyogenes_phage	95.3	7.4e-39
AZA36230.1|852843_854028_+	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	93.9	3.1e-168
AZA35252.1|854028_855513_+|tail	phage tail protein	tail	A0A097PAW9	Streptococcus_pyogenes_phage	98.8	1.8e-290
AZA35253.1|855513_858963_+	CHAP domain-containing protein	NA	A0A097PBF5	Streptococcus_pyogenes_phage	98.9	0.0e+00
AZA35254.1|858967_860830_+	hypothetical protein	NA	A0A097PAT0	Streptococcus_pyogenes_phage	99.8	0.0e+00
AZA35255.1|860840_861188_+	DUF1366 domain-containing protein	NA	A0A097PAX5	Streptococcus_pyogenes_phage	100.0	3.5e-59
AZA35256.1|861337_861661_+	hypothetical protein	NA	A0A097PAX2	Streptococcus_pyogenes_phage	100.0	7.7e-53
AZA35257.1|861660_861993_+|holin	phage holin	holin	A0A097PBF6	Streptococcus_pyogenes_phage	100.0	5.7e-51
AZA35258.1|861994_862759_+	CHAP domain-containing protein	NA	A0A097PAT3	Streptococcus_pyogenes_phage	100.0	1.5e-150
AZA35259.1|862770_863373_+	hypothetical protein	NA	A0A097PAX9	Streptococcus_pyogenes_phage	98.8	7.8e-91
AZA35260.1|863383_864157_+	hypothetical protein	NA	A0A097PAV0	Streptococcus_pyogenes_phage	94.6	4.6e-128
AZA35261.1|864166_864388_+	hypothetical protein	NA	A0A097PAX7	Streptococcus_pyogenes_phage	84.5	2.5e-18
AZA35262.1|864387_865047_+	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	96.3	6.3e-118
AZA35263.1|865115_865550_-	hypothetical protein	NA	NA	NA	NA	NA
AZA35264.1|865821_866628_-	deoxyribonuclease	NA	NA	NA	NA	NA
AZA35265.1|866859_867048_+	Paratox	NA	A3F673	Streptococcus_phage	73.3	6.1e-18
867216:867261	attR	CTCAAGAAGTGATTAAATAAAACATTAAAGAGCCTTGTCATATCAA	NA	NA	NA	NA
>prophage 6
CP033907	Streptococcus pyogenes strain Duke-Large chromosome, complete genome	1903852	1205016	1275412	1903852	holin,protease,capsid,terminase,tRNA,portal,tail	Streptococcus_phage(58.54%)	73	NA	NA
AZA35567.1|1205016_1205712_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZA35568.1|1205730_1206492_-	DUF3169 family protein	NA	NA	NA	NA	NA
AZA36238.1|1206488_1206704_-	transcriptional regulator	NA	NA	NA	NA	NA
AZA35569.1|1207063_1209682_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.9	1.9e-61
AZA35570.1|1210068_1211124_-	foldase	NA	NA	NA	NA	NA
AZA35571.1|1211186_1211894_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.6	8.8e-09
AZA35572.1|1211959_1213156_-	MFS transporter	NA	NA	NA	NA	NA
AZA35573.1|1213531_1215337_-	oligoendopeptidase F	NA	NA	NA	NA	NA
AZA35574.1|1215349_1216312_-	competence protein CoiA	NA	NA	NA	NA	NA
AZA35575.1|1216606_1217323_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZA35576.1|1217441_1218146_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
AZA35577.1|1218347_1219376_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AZA35578.1|1219382_1220603_+	DUF3114 domain-containing protein	NA	NA	NA	NA	NA
AZA35579.1|1220716_1221307_-	peptidase S11	NA	NA	NA	NA	NA
AZA35580.1|1221303_1221552_-	hypothetical protein	NA	NA	NA	NA	NA
AZA35581.1|1221920_1222526_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	1.8e-58
AZA35582.1|1222622_1223663_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
AZA35583.1|1223733_1225977_-	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	59.2	1.8e-55
AZA35584.1|1225957_1226620_-	ComEA family DNA-binding protein	NA	NA	NA	NA	NA
AZA35585.1|1226819_1227638_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZA35586.1|1227677_1228454_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
AZA35587.1|1228443_1228722_+	GIY-YIG nuclease family protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	1.8e-05
AZA35588.1|1230874_1232494_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	1.9e-59
AZA35589.1|1232800_1234345_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.1	1.1e-35
AZA35590.1|1234298_1234523_+	hypothetical protein	NA	NA	NA	NA	NA
AZA35591.1|1234592_1235288_-	TIGR02206 family membrane protein	NA	NA	NA	NA	NA
AZA35592.1|1235367_1236759_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
AZA35593.1|1236956_1238003_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZA35594.1|1238103_1238700_-	recombination protein RecR	NA	NA	NA	NA	NA
AZA35595.1|1238746_1238938_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZA35596.1|1239497_1240277_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZA35597.1|1240400_1240943_-	hypothetical protein	NA	NA	NA	NA	NA
AZA35598.1|1241103_1241625_-	transcription repressor NadR	NA	NA	NA	NA	NA
AZA35599.1|1241732_1242428_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
AZA35600.1|1242666_1243602_+	dihydroorotate dehydrogenase	NA	A0A1V0SH91	Hokovirus	45.1	4.6e-66
AZA35601.1|1243901_1245764_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	7.0e-90
AZA35602.1|1246294_1246477_-	Paratox	NA	A3F673	Streptococcus_phage	75.0	5.3e-19
AZA35603.1|1246589_1247372_-	exotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	45.8	4.3e-49
AZA35604.1|1247619_1248744_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	49.1	3.1e-93
AZA35605.1|1248879_1250097_-|holin	holin	holin	A0A1P8VVM5	Streptococcus_phage	60.1	1.4e-163
AZA35606.1|1250215_1250443_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
AZA35607.1|1250439_1250712_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
AZA35608.1|1250723_1251356_-	hypothetical protein	NA	Q938J7	Temperate_phage	50.5	4.0e-45
AZA35609.1|1251358_1251787_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	87.9	3.7e-63
AZA35610.1|1251795_1253577_-	hypothetical protein	NA	Q938J9	Temperate_phage	40.2	1.5e-65
AZA35611.1|1253591_1254707_-	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	66.6	4.8e-110
AZA35612.1|1254703_1256665_-	peptidase	NA	M1PKG3	Streptococcus_phage	49.0	2.4e-96
AZA35613.1|1256661_1257357_-	hypothetical protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
AZA35614.1|1257353_1259711_-	hypothetical protein	NA	M1NRG5	Streptococcus_phage	50.3	2.6e-134
AZA35615.1|1259710_1260082_-	hypothetical protein	NA	M1PL84	Streptococcus_phage	59.2	1.2e-33
AZA35616.1|1260096_1260360_-	hypothetical protein	NA	A0A0B5A2F3	Streptococcus_phage	54.7	1.7e-18
AZA35617.1|1260370_1260949_-|tail	phage tail protein	tail	A0A1X9I5X2	Streptococcus_phage	62.9	2.9e-58
AZA35618.1|1261072_1261408_-	hypothetical protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	1.7e-34
AZA35619.1|1261408_1261645_-	hypothetical protein	NA	A0A1P8BMT2	Lactococcus_phage	66.7	2.5e-21
AZA35620.1|1261934_1262357_-	hypothetical protein	NA	A0A0B5A2F6	Streptococcus_phage	67.2	8.2e-47
AZA35621.1|1262366_1262567_-	hypothetical protein	NA	NA	NA	NA	NA
AZA35622.1|1262566_1263478_-|capsid	phage major capsid protein	capsid	M1PFL0	Streptococcus_phage	67.0	2.2e-113
AZA35623.1|1263502_1263964_-	DUF4355 domain-containing protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
AZA35624.1|1264043_1265459_-|terminase	terminase	terminase	A0A0B5A091	Streptococcus_phage	74.6	2.0e-214
AZA35625.1|1265778_1266045_-	hypothetical protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
AZA35626.1|1266096_1266321_-	hypothetical protein	NA	NA	NA	NA	NA
AZA35627.1|1266326_1267820_-	hypothetical protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
AZA35628.1|1267812_1269081_-|portal	phage portal protein	portal	M1PFL4	Streptococcus_phage	75.6	2.2e-188
AZA35629.1|1269077_1269434_-	hypothetical protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
AZA35630.1|1269581_1269926_-	HNH endonuclease	NA	M1Q0W7	Streptococcus_phage	69.4	3.2e-41
AZA35631.1|1270033_1270453_-	DUF1492 domain-containing protein	NA	A0A1X9I5B5	Streptococcus_phage	79.9	6.7e-57
AZA35632.1|1270961_1271291_-	hypothetical protein	NA	J7KGX3	Streptococcus_phage	84.4	7.1e-46
AZA35633.1|1271346_1271553_-	hypothetical protein	NA	NA	NA	NA	NA
AZA35634.1|1271561_1271702_-	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
AZA35635.1|1272798_1273074_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
AZA35636.1|1273172_1273760_-	DUF2140 family protein	NA	NA	NA	NA	NA
AZA35637.1|1273737_1274598_-	GDSL family lipase	NA	NA	NA	NA	NA
AZA35638.1|1274572_1275412_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 7
CP033907	Streptococcus pyogenes strain Duke-Large chromosome, complete genome	1903852	1825929	1846095	1903852	holin,integrase	Streptococcus_phage(56.25%)	26	1829128:1829148	1843396:1843416
AZA36118.1|1825929_1827150_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.3	1.6e-05
AZA36119.1|1827160_1829143_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	2.3e-62
1829128:1829148	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
AZA36120.1|1829237_1830383_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
AZA36121.1|1830637_1830781_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AZA36122.1|1831642_1832410_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
AZA36123.1|1832563_1832770_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
AZA36124.1|1832803_1833004_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
AZA36125.1|1833024_1833432_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
AZA36126.1|1833843_1834371_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
AZA36127.1|1834597_1834792_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AZA36128.1|1834991_1835183_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AZA36129.1|1835323_1835776_+	hypothetical protein	NA	NA	NA	NA	NA
AZA36130.1|1835877_1836210_+	hypothetical protein	NA	NA	NA	NA	NA
AZA36253.1|1836209_1836401_+	hypothetical protein	NA	NA	NA	NA	NA
AZA36131.1|1836412_1836742_+	hypothetical protein	NA	NA	NA	NA	NA
AZA36132.1|1836744_1837017_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
AZA36133.1|1837017_1837884_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
AZA36134.1|1837895_1839290_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
AZA36135.1|1839583_1839838_+	hypothetical protein	NA	NA	NA	NA	NA
AZA36136.1|1839834_1840008_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
AZA36137.1|1840188_1840698_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
AZA36138.1|1840771_1841260_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
AZA36139.1|1841659_1842022_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
AZA36140.1|1841996_1842374_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
AZA36141.1|1842510_1843143_+	hypothetical protein	NA	NA	NA	NA	NA
AZA36142.1|1843539_1846095_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	23.3	6.8e-43
1843396:1843416	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
