The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033910	Mycobacterium avium subsp. paratuberculosis strain MAPK_CN4/13 chromosome, complete genome	4836546	885214	949941	4836546	protease,tRNA,holin,transposase	Tupanvirus(17.65%)	59	NA	NA
AZA68652.1|885214_887746_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.7	3.0e-128
AZA68653.1|888082_888421_-	Lsr2 family protein	NA	A0A2D1GPL8	Mycobacterium_phage	41.5	2.1e-16
AZA68654.1|888564_890064_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	36.6	3.3e-74
AZA68655.1|890110_890926_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZA68656.1|890928_891360_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZA68657.1|891359_892286_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZA68658.1|892282_893194_-	DUF2520 domain-containing protein	NA	NA	NA	NA	NA
AZA68659.1|893309_894698_-	hypothetical protein	NA	NA	NA	NA	NA
AZA68660.1|894785_895262_-	DUF3180 domain-containing protein	NA	NA	NA	NA	NA
AZA68661.1|895261_895810_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZA68662.1|895918_896320_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZA68663.1|896312_897116_-	dihydropteroate synthase	NA	S4W084	Pandoravirus	33.0	3.9e-21
AZA68664.1|897135_897750_-	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	53.9	6.6e-45
AZA68665.1|897766_900166_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQU5	Bathycoccus_sp._RCC1105_virus	44.9	4.3e-108
AZA68666.1|900179_900404_-	hypothetical protein	NA	NA	NA	NA	NA
AZA68667.1|900438_900852_-	VOC family protein	NA	NA	NA	NA	NA
AZA68668.1|900991_901921_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZA68669.1|901917_903105_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AZA68670.1|903104_904118_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZA68671.1|906881_907181_-	PE family protein	NA	NA	NA	NA	NA
AZA68672.1|907497_908247_+	DUF541 domain-containing protein	NA	NA	NA	NA	NA
AZA68673.1|908254_908911_-	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	26.4	2.2e-06
AZA68674.1|908916_909879_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AZA68675.1|909857_910931_-	hydrolase	NA	NA	NA	NA	NA
AZA68676.1|910927_912313_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZA68677.1|912434_912923_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	45.1	9.6e-31
AZA68678.1|912903_913992_-	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	41.3	1.1e-53
AZA68679.1|914119_915370_+	hypothetical protein	NA	NA	NA	NA	NA
AZA68680.1|915405_916107_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZA68681.1|916103_916445_+	DUF2304 domain-containing protein	NA	NA	NA	NA	NA
AZA68682.1|916441_917383_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2K9L0I7	Tupanvirus	34.8	2.7e-37
AZA68683.1|917348_919157_+	hypothetical protein	NA	NA	NA	NA	NA
AZA68684.1|919311_920499_-|transposase	IS481-like element ISMav5 family transposase	transposase	NA	NA	NA	NA
AZA68685.1|920726_921932_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZA68686.1|922029_923691_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	32.8	8.4e-18
AZA68687.1|923687_926486_-	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	30.4	1.2e-98
AZA68688.1|926690_927281_-	hypothetical protein	NA	NA	NA	NA	NA
AZA71951.1|927469_927673_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	56.2	2.0e-14
AZA68689.1|927921_930252_+	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	27.1	5.1e-05
AZA68690.1|930383_931421_+	hypothetical protein	NA	NA	NA	NA	NA
AZA71952.1|931417_931786_-	helicase	NA	NA	NA	NA	NA
AZA71953.1|931742_932009_-	pilus biosynthesis protein TadE	NA	NA	NA	NA	NA
AZA68691.1|932068_932269_-	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
AZA71954.1|932287_932875_-	type II secretion system F family protein	NA	NA	NA	NA	NA
AZA68692.1|932897_933701_-	hypothetical protein	NA	NA	NA	NA	NA
AZA68693.1|933697_934873_-	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA	NA
AZA71955.1|934869_935925_-	helicase	NA	NA	NA	NA	NA
AZA68694.1|936436_937294_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZA68695.1|937759_938518_-	oxidoreductase	NA	NA	NA	NA	NA
AZA71956.1|938507_940154_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.0	8.0e-13
AZA68696.1|940150_941026_-	ABC transporter permease	NA	NA	NA	NA	NA
AZA68697.1|941018_941945_-	ABC transporter permease	NA	NA	NA	NA	NA
AZA68698.1|941946_943572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZA68699.1|943656_944199_-	DUF4232 domain-containing protein	NA	NA	NA	NA	NA
AZA71957.1|944313_946266_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.4	5.8e-87
AZA68700.1|946357_947029_-|protease	serine protease	protease	NA	NA	NA	NA
AZA68701.1|947249_947789_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZA68702.1|947789_948755_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZA71958.1|948747_949941_-|protease	serine protease	protease	A0A1B1IRH0	uncultured_Mediterranean_phage	25.0	2.6e-05
>prophage 2
CP033910	Mycobacterium avium subsp. paratuberculosis strain MAPK_CN4/13 chromosome, complete genome	4836546	2753606	2760178	4836546		Bacillus_phage(33.33%)	8	NA	NA
AZA70223.1|2753606_2754539_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	35.9	5.9e-05
AZA70224.1|2754473_2755517_-	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	27.9	1.1e-18
AZA70225.1|2755516_2756131_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZA70226.1|2756224_2756779_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.6	5.4e-06
AZA70227.1|2756966_2757233_+	hypothetical protein	NA	NA	NA	NA	NA
AZA70228.1|2757308_2757548_+	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	64.5	2.0e-21
AZA70229.1|2757590_2758043_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.7	3.7e-13
AZA70230.1|2758012_2760178_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	5.7e-208
