The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP027750	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzS24 chromosome, complete genome	6889553	1322800	1413637	6889553	tRNA,protease,tail,plate	Pseudomonas_phage(42.31%)	96	NA	NA
AZE28004.1|1322800_1324153_+|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	protease	NA	NA	NA	NA
AZE28005.1|1324227_1326615_+	Outer membrane protein assembly factor YaeT	NA	NA	NA	NA	NA
AZE28006.1|1326660_1327164_+	Outer membrane chaperone Skp, precursor	NA	NA	NA	NA	NA
AZE28007.1|1327167_1328223_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZE28008.1|1328332_1328773_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZE28009.1|1328769_1329546_+	Acyl-ADP--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZE28010.1|1329548_1330679_+	Lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZE28011.1|1330690_1331323_+	Ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	38.9	1.7e-27
AZE28012.1|1331392_1334917_+	DNA polymerase III alpha subunit	NA	A0A2L1IZ23	Streptomyces_phage	38.0	1.8e-195
AZE28013.1|1335057_1336005_+	Acetyl-coenzyme A carboxyl transferase alpha chain	NA	NA	NA	NA	NA
AZE28014.1|1336124_1337453_+|tRNA	tRNA(Ile)-lysidine synthetase	tRNA	NA	NA	NA	NA
AZE28015.1|1337498_1337642_+	hypothetical protein	NA	NA	NA	NA	NA
AZE28016.1|1337727_1339359_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	53.5	6.9e-158
AZE28017.1|1339364_1340210_+	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.8	1.2e-49
AZE28018.1|1340367_1341657_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	9.0e-137
AZE28019.1|1341829_1342108_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA	NA
AZE28020.1|1342104_1342812_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AZE28021.1|1342981_1343878_-	Transcriptional regulator, LysR family, in formaldehyde detoxification operon	NA	NA	NA	NA	NA
AZE28022.1|1343984_1345097_+	S-(hydroxymethyl)glutathione dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.2	8.3e-30
AZE28023.1|1345185_1346031_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
AZE28024.1|1346083_1346557_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
AZE28025.1|1346553_1347612_+|tRNA	tRNA pseudouridine(13) synthase	tRNA	NA	NA	NA	NA
AZE28026.1|1347599_1348349_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.6	1.4e-68
AZE28027.1|1348348_1349026_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.0	6.8e-43
AZE28028.1|1349235_1350069_+	Murein hydrolase activator NlpD	NA	A0A0S2SXL7	Bacillus_phage	33.3	6.3e-06
AZE28029.1|1350175_1351180_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	35.8	5.0e-34
AZE28030.1|1351681_1352005_-	4Fe-4S dicluster domain	NA	NA	NA	NA	NA
AZE28031.1|1352147_1354727_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.5	3.1e-27
AZE28032.1|1354923_1355649_+	Transcriptional regulator	NA	B5TK58	Pseudomonas_phage	91.4	1.3e-124
AZE28033.1|1356204_1356633_+	hypothetical protein	NA	NA	NA	NA	NA
AZE28034.1|1356993_1357575_+	hypothetical protein	NA	NA	NA	NA	NA
AZE28035.1|1357677_1358025_+	Holin	NA	B5TK61	Pseudomonas_phage	87.7	1.0e-50
AZE28036.1|1358191_1358956_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	26.3	2.0e-06
AZE28037.1|1359181_1359706_+	hypothetical protein	NA	NA	NA	NA	NA
AZE28038.1|1359709_1360318_+|plate	Baseplate assembly protein V	plate	A0A2H4JBW8	uncultured_Caudovirales_phage	59.1	1.8e-47
AZE28039.1|1360331_1360664_+|plate	Baseplate assembly protein W	plate	A0A2H4JI46	uncultured_Caudovirales_phage	69.1	2.1e-37
AZE28040.1|1360660_1361656_+|plate	Phage-related baseplate assembly protein	plate	A0A2H4JC04	uncultured_Caudovirales_phage	62.3	8.9e-108
AZE28041.1|1361652_1362387_+|tail	Phage tail fiber	tail	A0A2H4JDK0	uncultured_Caudovirales_phage	51.4	3.4e-40
AZE28042.1|1362383_1362914_+|tail	Phage tail fiber	tail	A2I2X8	Vibrio_virus	61.9	3.4e-50
AZE28043.1|1363493_1363823_+	hypothetical protein	NA	NA	NA	NA	NA
AZE28044.1|1363825_1364128_+	Phage protein	NA	Q8H9M8	Vibrio_phage	64.6	1.8e-11
AZE28045.1|1364214_1364436_+	hypothetical protein	NA	NA	NA	NA	NA
AZE28046.1|1364438_1365605_+|tail	Major tail sheath protein	tail	B0ZSG8	Halomonas_phage	57.5	1.4e-125
AZE28047.1|1365604_1366111_+	hypothetical protein	NA	Q6R4W3	Vibrio_virus	35.7	2.6e-23
AZE28048.1|1366237_1366849_+	hypothetical protein	NA	B0ZSH0	Halomonas_phage	36.4	1.5e-25
AZE28049.1|1366845_1366971_+	hypothetical protein	NA	NA	NA	NA	NA
AZE28050.1|1366977_1369185_+	Phage protein	NA	A0A2H4JAA5	uncultured_Caudovirales_phage	49.3	7.2e-09
AZE28051.1|1369184_1369568_+|tail	Unclassified tail protein	tail	A0A2H4JAC8	uncultured_Caudovirales_phage	59.8	4.0e-40
AZE28052.1|1369560_1369773_+|tail	P2-like prophage tail protein X	tail	A0A2H4JGD9	uncultured_Caudovirales_phage	61.4	6.9e-18
AZE28053.1|1369782_1370799_+|tail	Phage tail protein D	tail	A0A2H4JH05	uncultured_Caudovirales_phage	56.6	1.0e-106
AZE28054.1|1370941_1371526_+	hypothetical protein	NA	B5TK65	Pseudomonas_phage	72.5	3.1e-76
AZE28055.1|1371522_1371705_+	Mu-like prophage FluMu protein GP38	NA	B5TK66	Pseudomonas_phage	93.3	6.5e-25
AZE28056.1|1371704_1373201_+|tail	Bacteriophage tail sheath protein	tail	B5TK67	Pseudomonas_phage	91.0	2.0e-257
AZE28057.1|1373267_1373615_+|tail	Phage tail tube protein	tail	B5TK68	Pseudomonas_phage	93.9	2.9e-58
AZE28058.1|1373611_1373908_+|tail	Phage small tail protein E	tail	B5TK69	Pseudomonas_phage	94.9	2.3e-43
AZE28059.1|1374038_1376114_+|tail	Phage tail length tape-measure protein	tail	B5TK70	Pseudomonas_phage	48.2	1.8e-38
AZE28060.1|1376100_1377339_+|tail	Phage tail/DNA circulation protein	tail	B5TK71	Pseudomonas_phage	75.7	5.7e-181
AZE28061.1|1377342_1378383_+|tail	Prophage tail protein	tail	B5TK72	Pseudomonas_phage	82.7	3.8e-162
AZE28062.1|1378499_1379009_+|plate	Prophage baseplate assembly protein V	plate	B5TK73	Pseudomonas_phage	88.8	2.2e-78
AZE28063.1|1379008_1379407_+	Bacteriophage protein GP46	NA	B5TK74	Pseudomonas_phage	89.4	1.7e-65
AZE28064.1|1379396_1380437_+	Phage FluMu protein gp47	NA	B5TK75	Pseudomonas_phage	87.3	3.0e-167
AZE28065.1|1380424_1381024_+|tail	Prophage tail protein	tail	B5TK76	Pseudomonas_phage	91.0	2.5e-105
AZE28066.1|1381035_1381890_+|tail	Prophage tail fiber protein	tail	B5TK77	Pseudomonas_phage	76.4	1.5e-23
AZE28067.1|1381894_1382536_+|tail	putative tail fiber assembly-like protein	tail	B5TK78	Pseudomonas_phage	51.9	1.4e-37
AZE28068.1|1382667_1383588_+|tail	Prophage tail fiber protein	tail	B5TK77	Pseudomonas_phage	61.1	7.4e-24
AZE28069.1|1383587_1384067_+	hypothetical protein	NA	A0A291LAV4	Bordetella_phage	52.1	1.3e-11
AZE28070.1|1384226_1385129_+|tail	Prophage tail fiber protein	tail	B5TK81	Pseudomonas_phage	37.6	1.8e-35
AZE28071.1|1385680_1386421_+|tail	Prophage tail fiber protein	tail	B5TK77	Pseudomonas_phage	65.8	2.1e-21
AZE28072.1|1386423_1386855_+	hypothetical protein	NA	Q9ZXK5	Pseudomonas_virus	38.4	2.2e-23
AZE28073.1|1386900_1387464_+	Lytic enzyme	NA	B5TK83	Pseudomonas_phage	83.3	3.7e-87
AZE28074.1|1387445_1387982_+	hypothetical protein	NA	B5TK84	Pseudomonas_phage	71.3	6.3e-60
AZE28075.1|1388064_1388565_+	Nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	86.1	1.0e-72
AZE28076.1|1388648_1389701_+	RecA protein	NA	A0A0S2MVG1	Bacillus_phage	60.9	4.4e-113
AZE28077.1|1389709_1390177_+	Regulatory protein RecX	NA	NA	NA	NA	NA
AZE28078.1|1390222_1391338_-	Decarboxylase family protein	NA	NA	NA	NA	NA
AZE28079.1|1391821_1392016_+	hypothetical protein	NA	NA	NA	NA	NA
AZE28080.1|1392017_1392440_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA	NA
AZE28081.1|1392629_1393340_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA	NA
AZE28082.1|1393674_1394325_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA	NA
AZE28083.1|1394401_1394764_+	Diacylglycerol kinase	NA	NA	NA	NA	NA
AZE28084.1|1394760_1395687_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZE28085.1|1395820_1396600_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
AZE28086.1|1396672_1397368_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA	NA
AZE28087.1|1397454_1398225_-	Rhamnolipid biosynthesis 3-oxoacyl-ACP reductase RhlG	NA	NA	NA	NA	NA
AZE28088.1|1398358_1398820_-	Uncharacterized protein YehS	NA	Q9EYF4	Enterobacteria_phage	51.3	8.5e-37
AZE28089.1|1398886_1399597_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA	NA
AZE28090.1|1399679_1400153_-	Acetyltransferase	NA	NA	NA	NA	NA
AZE28091.1|1400259_1401597_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA	NA
AZE28092.1|1401697_1401967_-	hypothetical protein	NA	NA	NA	NA	NA
AZE28093.1|1401988_1403830_+	Kup system potassium uptake protein	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	35.0	8.0e-78
AZE28094.1|1404029_1404305_-	hypothetical protein	NA	NA	NA	NA	NA
AZE28095.1|1404802_1406098_-	Alanylphosphatidylglycerol hydrolase, periplasmic	NA	NA	NA	NA	NA
AZE28096.1|1406097_1408746_-	Alanylphosphatidylglycerol synthase	NA	NA	NA	NA	NA
AZE28097.1|1409684_1410749_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZE28098.1|1410950_1411904_-	putative lipoprotein	NA	NA	NA	NA	NA
AZE28099.1|1411921_1413637_-|tRNA	Prolyl-tRNA synthetase, bacterial type	tRNA	NA	NA	NA	NA
>prophage 2
CP027750	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzS24 chromosome, complete genome	6889553	2265548	2272445	6889553		uncultured_Caudovirales_phage(42.86%)	7	NA	NA
AZE28868.1|2265548_2266418_-	Integrase	NA	A0A2H4J1K3	uncultured_Caudovirales_phage	91.3	2.0e-151
AZE28869.1|2266985_2267624_+	hypothetical protein	NA	A0A059VFX9	Pseudomonas_phage	60.1	4.0e-61
AZE28870.1|2267803_2268901_+	hypothetical protein	NA	W6MVL2	Pseudomonas_phage	29.5	2.9e-27
AZE28871.1|2269084_2269423_+	Cell wall hydrolase	NA	A0A2D1GNI1	Pseudomonas_phage	71.4	1.9e-46
AZE28872.1|2269422_2269941_+	hypothetical protein	NA	A0A2H4IZW4	uncultured_Caudovirales_phage	64.5	4.2e-53
AZE28873.1|2269944_2270652_-	Gifsy-2 prophage protein	NA	A0A2H4J991	uncultured_Caudovirales_phage	70.0	8.3e-92
AZE28874.1|2271047_2272445_-	Transposase	NA	W5R8L2	Staphylococcus_phage	32.5	2.2e-40
>prophage 3
CP027750	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzS24 chromosome, complete genome	6889553	3859557	3862689	6889553	integrase,tail	uncultured_Caudovirales_phage(83.33%)	6	3851014:3851028	3862802:3862816
3851014:3851028	attL	CGGAATCGAACCGGC	NA	NA	NA	NA
AZE30322.1|3859557_3860109_-	Phage endolysin	NA	A0A2H4JHX4	uncultured_Caudovirales_phage	68.1	5.5e-67
AZE30323.1|3860132_3861185_-|tail	Phage tail protein D	tail	A0A2H4JBF6	uncultured_Caudovirales_phage	75.5	1.4e-148
AZE30324.1|3861242_3861449_-|tail	Phage tail protein	tail	E5E3W5	Burkholderia_phage	46.0	6.5e-05
AZE30325.1|3861423_3861912_-	Phage protein U	NA	A0A2H4J875	uncultured_Caudovirales_phage	65.8	1.7e-59
AZE30326.1|3861992_3862370_+|integrase	Phage-related integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	70.7	1.2e-41
AZE30327.1|3862392_3862689_+	Integrase	NA	A0A2H4JDJ8	uncultured_Caudovirales_phage	59.4	3.5e-20
3862802:3862816	attR	CGGAATCGAACCGGC	NA	NA	NA	NA
>prophage 4
CP027750	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzS24 chromosome, complete genome	6889553	4300916	4307174	6889553	tRNA	uncultured_Caudovirales_phage(85.71%)	9	NA	NA
AZE30702.1|4300916_4301309_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	tRNA	A0A2H4JA39	uncultured_Caudovirales_phage	84.6	6.7e-59
AZE30703.1|4301312_4301675_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	tRNA	A0A2H4J8C0	uncultured_Caudovirales_phage	75.0	2.5e-44
AZE30704.1|4301674_4301974_+|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	tRNA	A0A2H4JG28	uncultured_Caudovirales_phage	69.7	1.1e-32
AZE30705.1|4301970_4302306_+|tRNA	tRNA 2-thiouridine synthesis protein TusE	tRNA	A0A2H4J8B6	uncultured_Caudovirales_phage	82.0	1.9e-46
AZE30706.1|4302302_4302839_+	Anthranilate phosphoribosyltransferase like	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	83.9	5.2e-78
AZE30707.1|4302835_4303303_+	Anthranilate phosphoribosyltransferase like	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	82.6	8.2e-72
AZE30708.1|4303392_4304400_+	Glutathione S-transferase, omega	NA	NA	NA	NA	NA
AZE30709.1|4304498_4305893_-	Precorrin-2 oxidase	NA	NA	NA	NA	NA
AZE30710.1|4305893_4307174_-|tRNA	Seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	55.1	2.1e-101
