The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033969	Cupriavidus pauculus strain FDAARGOS_614 chromosome 1, complete sequence	3633789	50426	59296	3633789		Tupanvirus(16.67%)	8	NA	NA
AZG12282.1|50426_51350_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.2	6.7e-41
AZG12283.1|51499_52606_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZG12284.1|52706_53609_-	cysteine synthase CysM	NA	A0A1X9I5F1	Streptococcus_phage	40.1	2.2e-52
AZG12285.1|53722_55048_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	65.2	8.4e-146
AZG15225.1|55250_55562_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
AZG12286.1|55878_56877_-	ADP-glyceromanno-heptose 6-epimerase	NA	M4PRR6	Cyanophage	33.6	1.2e-27
AZG12287.1|56903_57848_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.2	1.1e-14
AZG12288.1|57922_59296_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	36.6	3.4e-73
>prophage 2
CP033969	Cupriavidus pauculus strain FDAARGOS_614 chromosome 1, complete sequence	3633789	1001313	1007437	3633789		uncultured_Caudovirales_phage(33.33%)	9	NA	NA
AZG13075.1|1001313_1001886_-	N-acetyltransferase family protein	NA	A0A2H4J136	uncultured_Caudovirales_phage	38.9	2.0e-19
AZG13076.1|1002091_1002451_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	45.3	6.8e-18
AZG13077.1|1002550_1002781_-	hypothetical protein	NA	NA	NA	NA	NA
AZG13078.1|1002950_1003595_-	exonuclease	NA	A0A2L0UZL4	Agrobacterium_phage	38.4	1.2e-33
AZG13079.1|1003606_1004257_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZG15273.1|1004657_1005320_+	septal ring lytic transglycosylase RlpA family protein	NA	H2BCY4	Synechococcus_phage	53.2	1.5e-18
AZG13080.1|1005450_1006380_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	40.9	1.0e-33
AZG13081.1|1006395_1006818_+	YraN family protein	NA	NA	NA	NA	NA
AZG13082.1|1006849_1007437_+	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	31.4	1.3e-13
>prophage 3
CP033969	Cupriavidus pauculus strain FDAARGOS_614 chromosome 1, complete sequence	3633789	1895955	1930530	3633789	head	Burkholderia_phage(40.0%)	41	NA	NA
AZG13826.1|1895955_1897167_+	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	41.1	2.4e-83
AZG13827.1|1897184_1898222_+	hypothetical protein	NA	NA	NA	NA	NA
AZG13828.1|1898259_1898691_-	ASCH domain-containing protein	NA	A0A291AUQ6	Sinorhizobium_phage	43.8	1.2e-24
AZG13829.1|1898735_1898990_+	hypothetical protein	NA	NA	NA	NA	NA
AZG13830.1|1898995_1899856_-	DNA adenine methylase	NA	Q5QF26	Pseudomonas_virus	51.3	1.0e-72
AZG13831.1|1900327_1901407_-	hypothetical protein	NA	H2BD46	Pseudomonas_phage	45.7	5.6e-39
AZG13832.1|1901403_1902120_-	hypothetical protein	NA	J7I0T4	Pseudomonas_phage	42.4	2.1e-10
AZG13833.1|1902191_1903364_-	hypothetical protein	NA	J7HXB6	Pseudomonas_phage	52.4	9.9e-66
AZG13834.1|1903394_1904189_-	PD-(D/E)XK nuclease family protein	NA	J7HXJ4	Pseudomonas_phage	50.0	3.9e-58
AZG13835.1|1904745_1905093_+	hypothetical protein	NA	NA	NA	NA	NA
AZG13836.1|1905089_1905560_+	RusA family crossover junction endodeoxyribonuclease	NA	A9YWY9	Burkholderia_phage	57.1	1.2e-43
AZG15329.1|1905585_1906194_+	DNA-binding protein	NA	Q3HR05	Burkholderia_phage	54.6	5.2e-50
AZG13837.1|1906310_1906727_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PH90	Moraxella_phage	62.0	1.0e-36
AZG13838.1|1906788_1906959_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0R6PGU2	Moraxella_phage	67.9	1.5e-12
AZG13839.1|1907157_1908540_+	chromosome partitioning protein ParB	NA	A0A1P8VV91	Erythrobacter_phage	31.6	9.5e-84
AZG13840.1|1908545_1908956_+	hypothetical protein	NA	NA	NA	NA	NA
AZG13841.1|1908906_1910457_+	hypothetical protein	NA	W8VT11	Pseudomonas_phage	45.7	7.1e-112
AZG13842.1|1910453_1912022_+	DUF1073 domain-containing protein	NA	A0A0P0I486	Acinetobacter_phage	63.1	1.1e-157
AZG13843.1|1911963_1912605_+|head	phage head morphogenesis protein	head	A9YWZ8	Burkholderia_phage	67.4	2.6e-76
AZG13844.1|1912715_1914029_+	DUF2213 domain-containing protein	NA	A0A0P0IRE1	Acinetobacter_phage	46.4	3.2e-57
AZG13845.1|1914042_1914537_+	hypothetical protein	NA	A0A0P0I8F3	Acinetobacter_phage	54.3	1.7e-35
AZG15330.1|1914574_1915588_+	DUF2184 domain-containing protein	NA	A0A0N7IRF2	Acinetobacter_phage	70.6	6.0e-128
AZG13846.1|1915600_1916029_+	hypothetical protein	NA	NA	NA	NA	NA
AZG13847.1|1916069_1916453_+	DUF4054 domain-containing protein	NA	A9YX25	Burkholderia_phage	65.0	4.4e-39
AZG13848.1|1916481_1917018_+	hypothetical protein	NA	A9YX26	Burkholderia_phage	62.1	1.9e-48
AZG13849.1|1917021_1917393_+	hypothetical protein	NA	A9YX28	Burkholderia_phage	77.2	2.4e-50
AZG13850.1|1917396_1917987_+	hypothetical protein	NA	A9YX29	Burkholderia_phage	66.0	3.7e-69
AZG13851.1|1917997_1919473_+	DUF3383 domain-containing protein	NA	A0A0P0I492	Acinetobacter_phage	45.1	6.1e-105
AZG13852.1|1919488_1919935_+	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	49.3	1.2e-32
AZG13853.1|1919937_1920411_+	hypothetical protein	NA	A0A0N7IRF3	Acinetobacter_phage	43.0	5.1e-21
AZG13854.1|1922294_1922873_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	38.1	6.3e-21
AZG13855.1|1922872_1923187_+	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	41.2	1.2e-15
AZG13856.1|1923186_1924155_+	hypothetical protein	NA	A9YX04	Burkholderia_phage	82.1	4.4e-136
AZG13857.1|1924151_1924517_-	hypothetical protein	NA	A9YX05	Burkholderia_phage	64.2	7.1e-39
AZG13858.1|1924527_1925283_+	hypothetical protein	NA	A9YX06	Burkholderia_phage	78.5	2.4e-105
AZG13859.1|1925291_1925645_+	hypothetical protein	NA	A9YX11	Burkholderia_phage	74.4	2.3e-42
AZG13860.1|1925644_1926826_+	hypothetical protein	NA	A9YX12	Burkholderia_phage	74.0	3.7e-153
AZG13861.1|1926827_1927490_+	DUF2612 domain-containing protein	NA	A9YX13	Burkholderia_phage	73.6	1.7e-91
AZG13862.1|1927498_1928491_+	hypothetical protein	NA	A9YX14	Burkholderia_phage	37.3	5.8e-59
AZG13863.1|1928551_1929934_+	acyltransferase	NA	NA	NA	NA	NA
AZG13864.1|1929996_1930530_+	glycoside hydrolase family 19 protein	NA	A0A059VA40	Pseudomonas_phage	57.6	1.6e-42
>prophage 4
CP033969	Cupriavidus pauculus strain FDAARGOS_614 chromosome 1, complete sequence	3633789	2716174	2750378	3633789	transposase,integrase,holin	Acidithiobacillus_phage(33.33%)	35	2734760:2734774	2750070:2750084
AZG15373.1|2716174_2717782_+|holin	glucose-methanol-choline oxidoreductase	holin	A0A1V0SI18	Klosneuvirus	32.9	3.5e-61
AZG14459.1|2718109_2718448_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14460.1|2718678_2719677_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZG15374.1|2719804_2720758_+	sterol desaturase family protein	NA	NA	NA	NA	NA
AZG14461.1|2720672_2721176_+	DUF4345 domain-containing protein	NA	NA	NA	NA	NA
AZG14462.1|2721637_2721973_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZG14463.1|2722061_2723288_-|integrase	integrase	integrase	NA	NA	NA	NA
AZG14464.1|2723814_2724846_+	DNA-binding protein	NA	NA	NA	NA	NA
AZG14465.1|2725132_2725396_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZG14466.1|2725726_2726257_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14467.1|2726262_2726586_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14468.1|2726615_2727251_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14469.1|2727298_2728030_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14470.1|2728288_2728927_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AZG14471.1|2729025_2729757_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZG14472.1|2729769_2730174_-	DoxX family protein	NA	NA	NA	NA	NA
AZG14473.1|2730267_2730648_+	transcriptional regulator	NA	NA	NA	NA	NA
AZG14474.1|2730909_2731749_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	36.1	4.6e-33
AZG14475.1|2731812_2732427_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZG14476.1|2732849_2733092_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZG14477.1|2733339_2733759_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14478.1|2733742_2735389_-	hypothetical protein	NA	A0A2H4J185	uncultured_Caudovirales_phage	24.2	1.1e-09
2734760:2734774	attL	CTCCTCCCACAGCAA	NA	NA	NA	NA
AZG15375.1|2735700_2736898_+|transposase	IS3 family transposase	transposase	A0A1B0Z042	Pseudomonas_phage	61.5	1.5e-96
AZG14479.1|2737128_2738817_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AZG14480.1|2738828_2740097_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AZG14481.1|2741619_2742132_+	hypothetical protein	NA	NA	NA	NA	NA
AZG15376.1|2742513_2742759_-	HNH endonuclease	NA	NA	NA	NA	NA
AZG14482.1|2742755_2743112_-	RidA family protein	NA	NA	NA	NA	NA
AZG14483.1|2743122_2744517_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZG14484.1|2744522_2744876_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZG14485.1|2744865_2746011_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZG14486.1|2746310_2747213_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZG14487.1|2747768_2748059_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14488.1|2748074_2748842_-	AAA family ATPase	NA	K4HZD4	Acidithiobacillus_phage	54.6	3.0e-71
AZG14489.1|2748854_2750378_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	52.6	1.4e-149
2750070:2750084	attR	CTCCTCCCACAGCAA	NA	NA	NA	NA
>prophage 5
CP033969	Cupriavidus pauculus strain FDAARGOS_614 chromosome 1, complete sequence	3633789	3302472	3346894	3633789	tRNA,tail,plate,terminase,coat	Pseudomonas_phage(15.79%)	58	NA	NA
AZG15420.1|3302472_3303798_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
AZG14894.1|3303931_3304903_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
AZG14895.1|3305037_3305859_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
AZG14896.1|3305855_3307244_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	34.1	2.2e-43
AZG14897.1|3307423_3308113_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14898.1|3308203_3308812_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
AZG14899.1|3308863_3309364_+	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	32.3	5.6e-10
AZG14900.1|3309429_3310221_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
AZG14901.1|3310261_3311005_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
AZG14902.1|3311303_3312170_-	RNA methyltransferase	NA	NA	NA	NA	NA
AZG14903.1|3312406_3313240_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZG14904.1|3313515_3313704_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14905.1|3313879_3314059_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14906.1|3314055_3314295_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14907.1|3314456_3314714_+	KTSC domain-containing protein	NA	NA	NA	NA	NA
AZG14908.1|3314930_3315884_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14909.1|3315996_3316362_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14910.1|3316721_3317117_+	hypothetical protein	NA	J7HXK7	Pseudomonas_phage	37.7	5.4e-08
AZG14911.1|3317113_3317473_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14912.1|3317491_3317677_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14913.1|3317846_3318353_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A218M393	Acidovorax_phage	42.2	3.1e-24
AZG14914.1|3318349_3318622_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14915.1|3319027_3319420_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14916.1|3319746_3319965_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
AZG14917.1|3319970_3320600_+	hypothetical protein	NA	A0A068CDF3	Rhizobium_phage	38.1	8.3e-27
AZG14918.1|3320723_3321062_+	helix-turn-helix domain-containing protein	NA	A0A1S5NNJ5	Burkholderia_phage	54.3	1.0e-23
AZG14919.1|3321964_3322795_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14920.1|3323051_3323402_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14921.1|3323583_3324090_-	lysozyme	NA	I6NW41	Burkholderia_virus	64.3	2.4e-56
AZG14922.1|3324082_3324289_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14923.1|3324408_3324615_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14924.1|3324628_3326020_-	hypothetical protein	NA	Q6QI97	Burkholderia_phage	43.2	1.2e-46
AZG14925.1|3326126_3326522_+	hypothetical protein	NA	NA	NA	NA	NA
AZG15421.1|3326514_3327096_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14926.1|3327183_3328323_-|plate	baseplate protein	plate	B3GAJ9	uncultured_virus	41.1	4.3e-50
AZG14927.1|3328324_3328705_-|tail	phage tail protein	tail	NA	NA	NA	NA
AZG14928.1|3328701_3329373_-|plate	phage baseplate assembly protein V	plate	B3GAJ7	uncultured_virus	36.4	3.3e-13
AZG14929.1|3329369_3330491_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14930.1|3330498_3331455_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14931.1|3331456_3333394_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14932.1|3333634_3334108_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14933.1|3334274_3334664_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14934.1|3334666_3335098_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14935.1|3335157_3336678_-|tail	phage tail protein	tail	B3GAJ6	uncultured_virus	41.6	2.8e-84
AZG14936.1|3336899_3337727_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14937.1|3337726_3338383_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14938.1|3338392_3338821_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14939.1|3338822_3339215_-	hypothetical protein	NA	NA	NA	NA	NA
AZG15422.1|3339218_3339470_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14940.1|3339553_3340873_-|coat	P22 coat - protein 5 family protein	coat	W6EBZ8	Rhizobium_phage	54.5	3.2e-97
AZG14941.1|3340939_3341722_-	hypothetical protein	NA	A0A0H5AWD1	Pseudomonas_phage	52.9	2.6e-46
AZG15423.1|3341822_3343211_-	DUF4055 domain-containing protein	NA	A0A0H5AWC7	Pseudomonas_phage	45.8	1.6e-94
AZG15424.1|3343268_3344570_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	65.3	3.2e-158
AZG14942.1|3344562_3345036_-	DUF2280 domain-containing protein	NA	I6S1P9	Salmonella_phage	62.6	1.1e-36
AZG14943.1|3345066_3345720_-	hypothetical protein	NA	A9YWZ4	Burkholderia_phage	57.9	5.3e-69
AZG14944.1|3345723_3345909_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14945.1|3346237_3346411_+	type II toxin-antitoxin system HicA family toxin	NA	A0A0R6PGU2	Moraxella_phage	51.9	2.6e-07
AZG14946.1|3346477_3346894_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PH90	Moraxella_phage	60.0	6.5e-36
>prophage 6
CP033969	Cupriavidus pauculus strain FDAARGOS_614 chromosome 1, complete sequence	3633789	3354486	3366779	3633789		Burkholderia_virus(11.11%)	16	NA	NA
AZG14961.1|3354486_3354927_+	hypothetical protein	NA	Q6JIG5	Burkholderia_virus	66.0	3.7e-50
AZG14962.1|3354911_3355220_+	DUF1364 family protein	NA	K7P6U2	Enterobacteria_phage	40.8	6.9e-11
AZG14963.1|3355251_3355773_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14964.1|3356029_3356341_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14965.1|3356361_3357042_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14966.1|3357112_3358930_+	DNA cytosine methyltransferase	NA	H9C171	Pectobacterium_phage	47.0	3.9e-162
AZG14967.1|3358926_3359628_+	hypothetical protein	NA	O03965	Myxococcus_phage	48.3	3.1e-54
AZG14968.1|3359624_3359921_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14969.1|3359917_3360532_+	hypothetical protein	NA	K7R9L4	Vibrio_phage	36.0	6.9e-18
AZG14970.1|3360534_3360897_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14971.1|3360893_3361340_+	hypothetical protein	NA	A0A2H4P797	Pseudomonas_phage	40.5	3.3e-22
AZG14972.1|3361336_3361996_-	hypothetical protein	NA	NA	NA	NA	NA
AZG14973.1|3362201_3362906_-	DUF4145 domain-containing protein	NA	M1PSB6	Streptococcus_phage	40.1	9.6e-24
AZG14974.1|3363485_3364049_+	hypothetical protein	NA	A0A2H4JG39	uncultured_Caudovirales_phage	58.7	4.7e-29
AZG14975.1|3364123_3365185_+	hypothetical protein	NA	NA	NA	NA	NA
AZG14976.1|3365177_3366779_+	endonuclease	NA	U6C712	Ralstonia_phage	43.0	7.4e-104
>prophage 1
CP033970	Cupriavidus pauculus strain FDAARGOS_614 chromosome 2, complete sequence	1897729	27843	36259	1897729		Bacillus_phage(33.33%)	7	NA	NA
AZG15453.1|27843_28836_+	glycosyltransferase	NA	F1C5B0	Cronobacter_phage	32.6	5.3e-36
AZG15454.1|28823_29747_+	formyltransferase	NA	R9S626	Prochlorococcus_phage	41.0	6.3e-07
AZG15455.1|29757_30810_+	bifunctional UDP-4-keto-pentose/UDP-xylose synthase	NA	A0A2K9KZK0	Tupanvirus	23.7	1.1e-15
AZG15456.1|30817_31714_+	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase	NA	NA	NA	NA	NA
AZG15457.1|31717_34057_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	40.1	6.3e-128
AZG16932.1|34113_35559_-	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	24.8	1.2e-15
AZG15458.1|35581_36259_-	response regulator	NA	W8CYM9	Bacillus_phage	38.3	3.0e-38
>prophage 1
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	0	1453	312343		Bacillus_virus(100.0%)	1	NA	NA
AZG11917.1|736_1453_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	41.7	1.0e-12
>prophage 2
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	4796	69914	312343	transposase,tRNA,integrase	Leptospira_phage(16.67%)	59	34200:34215	64679:64694
AZG11919.1|4796_5342_+|transposase	transposase	transposase	NA	NA	NA	NA
AZG11920.1|5453_6893_+|transposase	IS481 family transposase	transposase	O12274	Simian_T-lymphotropic_virus	37.8	4.1e-05
AZG11921.1|6889_7723_+	general secretion pathway protein GspA	NA	NA	NA	NA	NA
AZG11922.1|7719_7992_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11923.1|8694_9117_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZG11924.1|9604_12097_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	40.8	2.8e-118
AZG11925.1|12153_12462_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZG11926.1|12703_13828_-	glycosyltransferase	NA	U5P087	Shigella_phage	47.3	2.1e-73
AZG11927.1|13824_14208_-	GtrA family protein	NA	NA	NA	NA	NA
AZG12205.1|14204_15812_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
AZG11928.1|16334_16868_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZG11929.1|17032_17596_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZG11930.1|17811_18867_+	DMT family transporter	NA	NA	NA	NA	NA
AZG11931.1|18964_19489_-|tRNA	prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
AZG11932.1|19532_20945_-	aspartate ammonia-lyase	NA	NA	NA	NA	NA
AZG11933.1|20937_21921_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZG12206.1|21950_23327_-	MFS transporter	NA	NA	NA	NA	NA
AZG11934.1|24051_24960_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AZG11935.1|25779_26205_-	response regulator	NA	NA	NA	NA	NA
AZG11936.1|26201_29327_-	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	33.4	1.1e-47
AZG11937.1|29391_30578_-|transposase	IS3-like element ISRme13 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.7	3.2e-56
AZG11938.1|30636_31797_-	hypothetical protein	NA	NA	NA	NA	NA
AZG11939.1|32219_32798_-	hypothetical protein	NA	NA	NA	NA	NA
AZG11940.1|33352_34525_-|integrase	site-specific integrase	integrase	A0A0K0MWE8	Gordonia_phage	35.1	9.8e-05
34200:34215	attL	GGCAGCGCCGGGTCGA	NA	NA	NA	NA
AZG11941.1|34670_35618_+	DNA-binding protein	NA	NA	NA	NA	NA
AZG11942.1|35755_36190_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11943.1|36241_39223_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	26.3	1.8e-79
AZG11944.1|39372_40446_-	type II asparaginase	NA	NA	NA	NA	NA
AZG11945.1|40469_41237_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.2	1.9e-25
AZG11946.1|41246_42014_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZG11947.1|42010_42748_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZG11948.1|42756_44133_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZG11949.1|44135_44960_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZG11950.1|46008_47028_-	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZG11951.1|47861_49136_+	HNH endonuclease	NA	NA	NA	NA	NA
AZG11952.1|49132_51277_+|integrase	integrase	integrase	NA	NA	NA	NA
AZG11953.1|51302_51632_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11954.1|51704_52325_+	hypothetical protein	NA	NA	NA	NA	NA
AZG12207.1|52526_53249_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11955.1|53306_54497_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11956.1|54604_55297_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11957.1|55622_57098_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11958.1|57210_57543_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11959.1|57605_57974_-	hypothetical protein	NA	NA	NA	NA	NA
AZG11960.1|58192_58372_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZG11961.1|58623_59238_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11962.1|59248_59482_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11963.1|59703_60102_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11964.1|60483_61455_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZG11965.1|61507_62056_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11966.1|63077_63374_+	hypothetical protein	NA	NA	NA	NA	NA
AZG11967.1|63495_63960_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AZG11968.1|63959_64310_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AZG11969.1|64341_65931_+|transposase	IS66 family transposase	transposase	S5VLC8	Leptospira_phage	33.1	1.7e-39
64679:64694	attR	TCGACCCGGCGCTGCC	NA	NA	NA	NA
AZG11970.1|65934_66624_+	hypothetical protein	NA	Q8W6R8	Burkholderia_virus	45.7	2.6e-37
AZG11971.1|66620_67082_-	hypothetical protein	NA	NA	NA	NA	NA
AZG12208.1|67078_67342_-	hypothetical protein	NA	NA	NA	NA	NA
AZG11972.1|67683_68808_+	ParA family protein	NA	Q7Y3Y6	Yersinia_phage	27.1	1.5e-07
AZG11973.1|68804_69914_+	ParB/RepB/Spo0J family partition protein	NA	S5WII0	Leptospira_phage	27.4	3.9e-11
>prophage 3
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	77716	80368	312343		Bacillus_virus(100.0%)	1	NA	NA
AZG11978.1|77716_80368_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	30.7	3.5e-18
>prophage 4
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	83500	84460	312343		Pseudomonas_phage(100.0%)	1	NA	NA
AZG11982.1|83500_84460_-	5'-3' exonuclease	NA	A0A2H4P757	Pseudomonas_phage	26.5	9.1e-25
>prophage 5
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	89873	90926	312343		Vibrio_phage(100.0%)	1	NA	NA
AZG11989.1|89873_90926_+	SAM-dependent methyltransferase	NA	A0A2I7RHK4	Vibrio_phage	39.5	5.5e-23
>prophage 6
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	97269	98265	312343		Ralstonia_phage(100.0%)	1	NA	NA
AZG11998.1|97269_98265_-	endonuclease	NA	U6C712	Ralstonia_phage	32.2	6.1e-08
>prophage 7
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	108217	109075	312343		Lake_Baikal_phage(100.0%)	1	NA	NA
AZG12013.1|108217_109075_-	DNA/RNA non-specific endonuclease	NA	A0A2H4N7Z3	Lake_Baikal_phage	34.0	1.4e-24
>prophage 8
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	113893	115687	312343		Vibrio_phage(100.0%)	1	NA	NA
AZG12019.1|113893_115687_+	ATP-dependent helicase	NA	A0A2I7RIK5	Vibrio_phage	31.8	7.3e-44
>prophage 9
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	122492	123694	312343		Burkholderia_virus(50.0%)	2	NA	NA
AZG12213.1|122492_123020_+	DUF3850 domain-containing protein	NA	I6NVL3	Burkholderia_virus	54.0	5.2e-06
AZG12032.1|123022_123694_+	hypothetical protein	NA	A0A2R3UAL4	Myoviridae_environmental_samples	40.7	1.2e-12
>prophage 10
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	128578	129760	312343		Burkholderia_virus(100.0%)	1	NA	NA
AZG12034.1|128578_129760_+	phage Gp37/Gp68 family protein	NA	Q8W6R4	Burkholderia_virus	49.3	4.9e-81
>prophage 11
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	162384	164888	312343		Mycobacterium_phage(50.0%)	3	NA	NA
AZG12080.1|162384_163356_+	hypothetical protein	NA	A0A1D8EVK5	Mycobacterium_phage	28.9	4.0e-12
AZG12081.1|163508_163790_+	hypothetical protein	NA	NA	NA	NA	NA
AZG12082.1|164168_164888_+	DUF2591 domain-containing protein	NA	F8TVJ2	EBPR_siphovirus	35.5	2.3e-09
>prophage 12
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	174933	178492	312343		Virus_Rctr197k(50.0%)	6	NA	NA
AZG12094.1|174933_175455_+	hypothetical protein	NA	A0A1P8DIR2	Virus_Rctr197k	38.9	3.8e-09
AZG12095.1|175508_176135_+	hypothetical protein	NA	NA	NA	NA	NA
AZG12096.1|176237_176498_+	hypothetical protein	NA	NA	NA	NA	NA
AZG12097.1|176614_177445_+	hypothetical protein	NA	NA	NA	NA	NA
AZG12098.1|177579_177855_-	hypothetical protein	NA	NA	NA	NA	NA
AZG12099.1|178204_178492_+	HU family DNA-binding protein	NA	A3E2K9	Sodalis_phage	39.3	7.1e-10
>prophage 13
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	181531	183521	312343		Pseudomonas_phage(50.0%)	3	NA	NA
AZG12218.1|181531_182365_+	class I SAM-dependent methyltransferase	NA	A0A2K8I312	Pseudomonas_phage	52.7	7.0e-66
AZG12105.1|182685_183111_+	hypothetical protein	NA	NA	NA	NA	NA
AZG12106.1|183131_183521_+	chemotaxis protein CheY	NA	W8CYM9	Bacillus_phage	38.3	6.1e-12
>prophage 14
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	194032	194692	312343		Faecalibacterium_phage(100.0%)	1	NA	NA
AZG12220.1|194032_194692_+	hypothetical protein	NA	A0A2K9V411	Faecalibacterium_phage	31.7	3.8e-06
>prophage 15
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	197700	198354	312343		Burkholderia_phage(100.0%)	1	NA	NA
AZG12117.1|197700_198354_+	hypothetical protein	NA	I6NP76	Burkholderia_phage	36.8	2.9e-06
>prophage 16
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	201689	204006	312343	transposase	Acidithiobacillus_phage(100.0%)	2	NA	NA
AZG12121.1|201689_203243_+|transposase	IS21-like element ISRme9 family transposase	transposase	K4I413	Acidithiobacillus_phage	54.6	8.3e-161
AZG12122.1|203250_204006_+	AAA family ATPase	NA	K4HZD4	Acidithiobacillus_phage	62.7	4.0e-84
>prophage 17
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	208243	209430	312343	transposase	Acinetobacter_phage(100.0%)	1	NA	NA
AZG12128.1|208243_209430_-|transposase	IS3-like element ISRme13 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.7	3.2e-56
>prophage 18
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	214118	217232	312343		Leptospira_phage(100.0%)	1	NA	NA
AZG12133.1|214118_217232_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.5	1.8e-61
>prophage 19
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	220813	223729	312343	transposase	Salmonella_phage(100.0%)	1	NA	NA
AZG12136.1|220813_223729_-|transposase	Tn3-like element IS1071 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	24.0	1.4e-52
>prophage 20
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	230143	236860	312343	transposase	uncultured_Caudovirales_phage(50.0%)	3	NA	NA
AZG12144.1|230143_233020_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	24.4	3.7e-37
AZG12227.1|233035_233383_-	hypothetical protein	NA	NA	NA	NA	NA
AZG12228.1|233875_236860_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	26.8	4.3e-81
>prophage 21
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	246800	250573	312343		Acidovorax_phage(50.0%)	4	NA	NA
AZG12156.1|246800_247706_-	recombination-associated protein RdgC	NA	A0A218M310	Acidovorax_phage	44.1	2.9e-65
AZG12157.1|248414_248636_-	hypothetical protein	NA	NA	NA	NA	NA
AZG12229.1|248916_249858_+	DNA primase	NA	NA	NA	NA	NA
AZG12158.1|250024_250573_+	DUF882 domain-containing protein	NA	A0A2I7R851	Vibrio_phage	42.6	4.1e-06
>prophage 22
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	253708	254584	312343		Vibrio_phage(100.0%)	1	NA	NA
AZG12161.1|253708_254584_-	hypothetical protein	NA	I3PUZ3	Vibrio_phage	42.1	2.5e-29
>prophage 23
CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	312343	272226	276257	312343		Ralstonia_phage(50.0%)	3	NA	NA
AZG12177.1|272226_272661_-	lytic transglycosylase	NA	A0A0A8J856	Ralstonia_phage	34.0	6.6e-07
AZG12232.1|272707_273679_+	sel1 repeat family protein	NA	NA	NA	NA	NA
AZG12178.1|273764_276257_-	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	NA	M4QT32	Loktanella_phage	39.5	1.4e-146
