assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003856695.1_ASM385669v1	CP023844	Escherichia coli strain 4/1-1 chromosome, complete genome	1	47728-47859	1	PILER-CR	no		DEDDh,DinG,cas3,RT,csa3,c2c9_V-U4	Orphan	TTTTCAATATTGGTGAT	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,RT,csa3,c2c9_V-U4	NA|73aa|up_7|CP023844.1_39560_39779_-,NA	NA|383aa|up_9|CP023844.1_35165_36314_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|up_8|CP023844.1_36331_39553_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|73aa|up_7|CP023844.1_39560_39779_-	NA	NA|132aa|up_6|CP023844.1_39813_40209_+	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|197aa|up_5|CP023844.1_40327_40918_-	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|262aa|up_4|CP023844.1_40923_41709_-	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|518aa|up_3|CP023844.1_41817_43371_-	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|406aa|up_2|CP023844.1_43443_44661_-	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|381aa|up_1|CP023844.1_44789_45932_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|505aa|up_0|CP023844.1_45962_47477_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|down_0|CP023844.1_47949_48720_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|down_1|CP023844.1_48734_49676_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|down_2|CP023844.1_49726_51013_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|down_3|CP023844.1_51009_51297_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|444aa|down_4|CP023844.1_51355_52687_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|177aa|down_5|CP023844.1_52794_53325_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|down_6|CP023844.1_53317_55180_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_7|CP023844.1_55371_55851_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|78aa|down_8|CP023844.1_55936_56170_+	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|95aa|down_9|CP023844.1_56172_56457_+	pfam01845, CcdB, CcdB protein
GCA_003856695.1_ASM385669v1	CP023844	Escherichia coli strain 4/1-1 chromosome, complete genome	2	766023-766164	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,csa3,c2c9_V-U4	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,RT,csa3,c2c9_V-U4	NA|62aa|up_5|CP023844.1_762026_762212_+,NA|80aa|up_4|CP023844.1_762475_762715_-,NA	NA|323aa|up_9|CP023844.1_757909_758878_+	cd13669, PBP2_TRAP_TM0322_like, Periplasmic component of TRAP-type C4-dicarboxylate transport system TM0322 from Thermotoga maritima and similar proteins; the type 2 periplasmic binding protein fold	NA|154aa|up_8|CP023844.1_758937_759399_+	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|437aa|up_7|CP023844.1_759398_760709_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|428aa|up_6|CP023844.1_760755_762039_-	PRK05614, gltA, citrate synthase	NA|62aa|up_5|CP023844.1_762026_762212_+	NA	NA|80aa|up_4|CP023844.1_762475_762715_-	NA	NA|130aa|up_3|CP023844.1_762747_763137_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|CP023844.1_763130_763478_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|CP023844.1_763477_765244_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|CP023844.1_765259_765976_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|CP023844.1_766337_769139_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|CP023844.1_769153_770371_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|CP023844.1_770464_771631_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|CP023844.1_771630_772500_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|241aa|down_4|CP023844.1_772603_773326_-	PRK09764, PRK09764, GntR family transcriptional regulator	NA|639aa|down_5|CP023844.1_773494_775411_+	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional	NA|878aa|down_6|CP023844.1_775428_778062_+	PRK09819, PRK09819, mannosylglycerate hydrolase	NA|398aa|down_7|CP023844.1_778259_779453_+	sd00006, TPR, Tetratricopeptide repeat	NA|523aa|down_8|CP023844.1_780995_782564_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_9|CP023844.1_782579_783719_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II
GCA_003856695.1_ASM385669v1	CP023844	Escherichia coli strain 4/1-1 chromosome, complete genome	3	932230-932312	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,csa3,c2c9_V-U4	Orphan	AGTTCACTGCCGTACAGGCAGCT	23	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,DinG,cas3,RT,csa3,c2c9_V-U4	NA|61aa|up_9|CP023844.1_921565_921748_+,NA|65aa|up_7|CP023844.1_922738_922933_-,NA	NA|61aa|up_9|CP023844.1_921565_921748_+	NA	NA|232aa|up_8|CP023844.1_921830_922526_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|65aa|up_7|CP023844.1_922738_922933_-	NA	NA|553aa|up_6|CP023844.1_922950_924609_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|331aa|up_5|CP023844.1_924605_925598_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|CP023844.1_925712_926828_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|CP023844.1_926824_928771_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|CP023844.1_928843_929068_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|CP023844.1_929390_929711_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|CP023844.1_929741_932018_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|CP023844.1_932702_932921_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|CP023844.1_933205_933910_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|CP023844.1_933951_935673_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|CP023844.1_935673_937440_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|CP023844.1_937562_938528_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|CP023844.1_939071_939566_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1369aa|down_6|CP023844.1_939700_943807_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|CP023844.1_943965_944577_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|CP023844.1_944587_945931_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|CP023844.1_946021_947314_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
