The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	90689	151200	4126211	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZI28148.1|90689_91640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28149.1|93083_93986_-	YgcG family protein	NA	NA	NA	NA	NA
AZI28150.1|93963_94593_-	LemA family protein	NA	NA	NA	NA	NA
AZI31505.1|94923_96306_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZI28151.1|96339_96969_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZI28152.1|97017_98625_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZI28153.1|98649_99333_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28154.1|99414_99891_-	bacterioferritin	NA	NA	NA	NA	NA
AZI28155.1|99931_100111_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28156.1|100097_101048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28157.1|102163_102691_+	META domain-containing protein	NA	NA	NA	NA	NA
AZI28158.1|102782_103598_+	META domain-containing protein	NA	NA	NA	NA	NA
AZI28159.1|104430_106509_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZI28160.1|106758_107031_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28161.1|107129_108218_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZI28162.1|108221_110126_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZI28163.1|110122_113797_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZI28164.1|113857_114421_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZI28165.1|114428_114851_-	glyoxalase	NA	NA	NA	NA	NA
AZI28166.1|114878_115298_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZI31506.1|115326_115773_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZI28167.1|115899_116397_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28168.1|116551_118822_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZI28169.1|118870_120103_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZI28170.1|120201_121152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28171.1|121197_121890_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZI28172.1|121886_122780_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZI28173.1|123174_124275_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZI28174.1|124356_124731_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
AZI28175.1|124790_127655_+	glycine dehydrogenase (aminomethyl-transferring)	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZI28176.1|127799_128540_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28177.1|128609_129821_+	CoA transferase	NA	NA	NA	NA	NA
AZI28178.1|129849_130818_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI28179.1|131431_132382_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI28180.1|132538_132862_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZI28181.1|132966_134016_-	cyclase family protein	NA	NA	NA	NA	NA
AZI28182.1|134012_134837_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZI28183.1|134837_135134_-	YciI family protein	NA	NA	NA	NA	NA
AZI28184.1|135159_135435_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
AZI28185.1|135491_136136_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZI28186.1|136135_136822_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
AZI31507.1|136951_137803_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28187.1|137853_138579_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI28188.1|138610_139960_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZI28189.1|140071_141004_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
AZI31508.1|141461_144257_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZI28190.1|144850_147793_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZI28191.1|147864_148584_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZI28192.1|148622_149171_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZI28193.1|149325_150225_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZI28194.1|150249_151200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	353415	416102	4126211	transposase	Lake_Baikal_phage(14.29%)	54	NA	NA
AZI28374.1|353415_354366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28375.1|354482_355550_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
AZI28376.1|355625_358754_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
AZI28377.1|359261_360227_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZI28378.1|360229_360901_+	HAD family hydrolase	NA	NA	NA	NA	NA
AZI28379.1|361057_362017_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
AZI28380.1|362024_362687_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
AZI28381.1|362683_363634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28382.1|363620_363812_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28383.1|363755_365009_+	CoA transferase	NA	NA	NA	NA	NA
AZI28384.1|364986_365949_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI31518.1|366101_366575_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZI28385.1|366574_367807_+	2-methylfumaryl-CoA isomerase	NA	NA	NA	NA	NA
AZI28386.1|368552_368834_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28387.1|368820_369807_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28388.1|369950_370355_+	RidA family protein	NA	NA	NA	NA	NA
AZI28389.1|370496_373883_+	molybdopterin oxidoreductase	NA	NA	NA	NA	NA
AZI28390.1|373913_375377_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZI28391.1|375373_377014_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZI31519.1|377123_377759_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28392.1|377788_378229_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28393.1|378739_378943_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
AZI28394.1|379118_380024_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28395.1|380122_381073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28396.1|382854_384048_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZI28397.1|384113_385142_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZI28398.1|385168_386341_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZI28399.1|386466_387444_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28400.1|387454_388426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI28401.1|388492_389278_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
AZI28402.1|389270_390503_-	CoA transferase	NA	NA	NA	NA	NA
AZI28403.1|390698_391454_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZI28404.1|391564_392083_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZI28405.1|393871_395272_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZI28406.1|395371_395716_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZI28407.1|395804_396275_+	universal stress protein	NA	NA	NA	NA	NA
AZI28408.1|396685_397084_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZI28409.1|397215_398166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28410.1|400610_401345_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZI28411.1|401754_401934_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28412.1|402124_403438_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZI28413.1|403453_404965_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
AZI28414.1|404961_406167_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZI28415.1|406362_407340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28416.1|407432_407927_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZI28417.1|408056_409115_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZI28418.1|409111_410731_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
AZI28419.1|410690_410999_-	GtrA family protein	NA	NA	NA	NA	NA
AZI28420.1|410918_412022_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZI28421.1|412018_412474_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
AZI28422.1|412479_413403_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZI28423.1|413492_414152_-	LysE family translocator	NA	NA	NA	NA	NA
AZI28424.1|414148_415063_-	DMT family transporter	NA	NA	NA	NA	NA
AZI28425.1|415151_416102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	497153	551348	4126211	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
AZI28502.1|497153_498104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28503.1|498226_498955_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
AZI28504.1|498961_500230_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AZI28505.1|500226_501060_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
AZI28506.1|501096_501837_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZI28507.1|501956_503132_-	dihydroorotase	NA	NA	NA	NA	NA
AZI28508.1|503128_504082_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
AZI28509.1|504095_504497_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
AZI31525.1|504489_505167_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
AZI28510.1|505182_505347_-	rubredoxin	NA	NA	NA	NA	NA
AZI28511.1|505463_506312_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZI28512.1|506308_506962_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
AZI28513.1|506978_508262_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AZI28514.1|508501_510127_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
AZI28515.1|510220_510622_-	RidA family protein	NA	NA	NA	NA	NA
AZI28516.1|510646_511081_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZI28517.1|511082_512732_-	2-aminobenzoate-CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
AZI28518.1|512772_513942_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZI28519.1|513944_514808_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
AZI28520.1|518171_518876_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
AZI28521.1|518869_519664_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
AZI28522.1|519660_520626_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZI28523.1|520629_521550_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZI28524.1|521646_522810_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI28525.1|523032_523923_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZI28526.1|523926_524430_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28527.1|524472_525471_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28528.1|525467_526418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31526.1|526506_526794_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28529.1|526985_527936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28530.1|527995_528556_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
AZI28531.1|530058_530940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28532.1|531053_532256_+	MFS transporter	NA	NA	NA	NA	NA
AZI28533.1|532384_534244_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZI28534.1|534321_535131_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZI28535.1|535201_536203_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
AZI28536.1|536234_537095_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZI28537.1|537294_538299_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
AZI28538.1|538295_539882_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI28539.1|539890_540817_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AZI28540.1|540839_541466_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZI28541.1|541564_542515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28542.1|542511_543648_-	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZI28543.1|543701_544478_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZI28544.1|544502_544961_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZI28545.1|545100_545742_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZI28546.1|545806_547189_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
AZI28547.1|547208_548063_+	cytochrome c1	NA	NA	NA	NA	NA
AZI28548.1|548221_548833_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZI28549.1|548842_549292_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZI28550.1|549810_549951_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28551.1|549958_550120_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZI28552.1|550195_550411_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28553.1|550397_551348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	561964	677948	4126211	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(18.52%)	110	NA	NA
AZI28562.1|561964_562915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28563.1|563645_564626_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI28564.1|564639_565764_+	CoA transferase	NA	NA	NA	NA	NA
AZI28565.1|565771_567526_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZI28566.1|567632_568532_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28567.1|568596_569580_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZI28568.1|569715_570696_+	AEC family transporter	NA	NA	NA	NA	NA
AZI28569.1|570712_572104_-	class II fumarate hydratase	NA	NA	NA	NA	NA
AZI28570.1|572255_572792_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZI31527.1|572863_574108_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	29.8	1.5e-16
AZI28571.1|574250_574889_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28572.1|574975_576865_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZI28573.1|576861_577803_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZI28574.1|577908_578958_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZI28575.1|579210_579912_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZI28576.1|579908_580607_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZI28577.1|580607_581963_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZI28578.1|581959_582451_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZI28579.1|582469_583426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI28580.1|584836_586939_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
AZI28581.1|587109_588153_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI28582.1|588196_588940_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28583.1|589961_590372_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZI28584.1|591321_592119_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI28585.1|593166_594117_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI28586.1|594203_595154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28587.1|595268_596270_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
AZI28588.1|596360_596927_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
AZI28589.1|597245_599159_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
AZI28590.1|599200_600631_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZI28591.1|600743_602156_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZI28592.1|602172_602868_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28593.1|603087_604038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28594.1|604289_604502_-	hypothetical protein	NA	NA	NA	NA	NA
AZI31528.1|604567_605179_-	S24 family peptidase	NA	NA	NA	NA	NA
AZI28595.1|605658_605979_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28596.1|605971_606670_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28597.1|606684_606906_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28598.1|606923_607874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28599.1|608549_608999_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZI28600.1|608985_610263_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZI28601.1|610265_611684_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZI31529.1|611712_612768_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZI28602.1|612773_613016_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZI28603.1|613138_613741_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZI28604.1|616269_617220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28605.1|617237_617885_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZI28606.1|617894_618146_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28607.1|618208_618691_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZI28608.1|618692_618893_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28609.1|618892_619288_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZI28610.1|619284_619683_+	HK97 gp10 family phage protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZI28611.1|619679_620102_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28612.1|620109_620610_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZI31530.1|620864_621383_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZI28613.1|621392_621722_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZI28614.1|621739_622030_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZI28615.1|622055_624668_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZI28616.1|624677_625037_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28617.1|625104_625638_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZI28618.1|625634_626024_+	peptidoglycan endopeptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZI28619.1|626016_629973_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZI28620.1|629977_630394_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28621.1|630374_630572_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28622.1|630612_630876_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZI28623.1|630875_631688_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28624.1|631692_631935_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28625.1|631913_632465_+	lysozyme	NA	NA	NA	NA	NA
AZI28626.1|632446_632980_+	DUF2514 family protein	NA	NA	NA	NA	NA
AZI28627.1|632976_633258_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28628.1|633600_633801_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28629.1|633807_634479_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZI28630.1|634834_635521_-	response regulator	NA	NA	NA	NA	NA
AZI28631.1|635501_636074_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZI28632.1|636139_637870_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZI28633.1|637922_638351_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZI28634.1|638353_639034_+	protein TolQ	NA	NA	NA	NA	NA
AZI28635.1|639033_639492_+	protein TolR	NA	NA	NA	NA	NA
AZI28636.1|639528_640503_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZI28637.1|640519_641836_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
AZI28638.1|641867_642365_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZI28639.1|642451_643300_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZI28640.1|643275_643833_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI28641.1|644757_644976_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28642.1|644962_645913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31531.1|648191_649280_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28643.1|649282_650725_-	pyruvate kinase	NA	NA	NA	NA	NA
AZI28644.1|650829_651975_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZI28645.1|652006_652804_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
AZI28646.1|652828_654388_-	chaperone SurA	NA	NA	NA	NA	NA
AZI28647.1|654384_656757_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZI28648.1|656866_657970_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZI28649.1|657969_658662_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZI28650.1|658805_659507_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28651.1|659491_659869_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZI28652.1|660600_661551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28653.1|661710_662583_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
AZI28654.1|662923_663142_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
AZI28655.1|663181_664561_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZI28656.1|664602_666000_-	amidase	NA	NA	NA	NA	NA
AZI28657.1|666039_667692_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
AZI28658.1|667695_668580_-	ABC transporter permease	NA	NA	NA	NA	NA
AZI28659.1|668579_669521_-	ABC transporter permease	NA	NA	NA	NA	NA
AZI28660.1|669599_671219_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI28661.1|671385_672201_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28662.1|672268_672838_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28663.1|672838_673789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28664.1|674443_675541_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZI28665.1|675574_676840_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
AZI28666.1|676997_677948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	682948	747049	4126211	transposase	Streptococcus_phage(16.67%)	52	NA	NA
AZI28671.1|682948_683899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28672.1|684120_686316_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
AZI28673.1|686388_686796_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZI28674.1|686743_686932_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28675.1|686918_687869_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28676.1|687984_688428_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZI28677.1|688490_689285_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZI28678.1|689450_690587_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZI28679.1|690657_691791_-	GTPase ObgE	NA	NA	NA	NA	NA
AZI28680.1|691940_692201_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZI28681.1|692234_692546_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZI28682.1|692970_694119_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZI28683.1|694233_695199_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZI28684.1|695467_696334_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28685.1|696464_698513_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZI28686.1|698530_700528_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
AZI28687.1|700562_701900_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZI28688.1|702162_704016_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI28689.1|704070_705552_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZI28690.1|705567_706155_-	toxin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
AZI28691.1|706237_706417_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28692.1|706603_711724_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZI28693.1|711801_713940_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZI28694.1|713936_715259_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZI28695.1|715260_716685_+	TolC family protein	NA	NA	NA	NA	NA
AZI28696.1|716775_717684_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28697.1|717782_718733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28698.1|718838_719774_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZI28699.1|719973_721668_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZI28700.1|721702_722629_+	VOC family protein	NA	NA	NA	NA	NA
AZI28701.1|722697_723795_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28702.1|723813_724677_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZI28703.1|724688_725471_+	ABC transporter permease	NA	NA	NA	NA	NA
AZI28704.1|725467_726586_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZI28705.1|726582_728115_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZI28706.1|728155_729163_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZI28707.1|729307_730030_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28708.1|730045_731068_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZI28709.1|731384_732119_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28710.1|732203_733949_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZI28711.1|733945_734698_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI28712.1|734742_735699_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI28713.1|735787_736354_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28714.1|736361_737222_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
AZI28715.1|737251_737995_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZI28716.1|738011_738695_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AZI28717.1|739532_740447_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI28718.1|740511_741462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28719.1|741560_742217_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZI28720.1|742364_745073_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZI28721.1|745082_746102_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZI28722.1|746098_747049_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	811507	879483	4126211	transposase	Bacillus_phage(33.33%)	58	NA	NA
AZI31534.1|811507_812524_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI28776.1|812720_813704_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI28777.1|815302_816691_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZI28778.1|816721_817711_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI28779.1|817821_819054_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZI28780.1|819335_820136_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28781.1|820158_822390_-	BCCT family transporter	NA	NA	NA	NA	NA
AZI28782.1|823177_823624_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZI28783.1|823645_824392_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZI28784.1|824535_825513_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZI28785.1|826146_826758_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZI28786.1|826751_827969_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZI28787.1|828109_829060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28788.1|829056_829776_-	lipoprotein	NA	NA	NA	NA	NA
AZI28789.1|829896_832056_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZI28790.1|832146_832416_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZI28791.1|832504_832711_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28792.1|832709_833237_+	lipoprotein	NA	NA	NA	NA	NA
AZI28793.1|833255_834035_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZI28794.1|834202_835219_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZI28795.1|835291_835783_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZI28796.1|835793_837509_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZI28797.1|838672_839623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28798.1|839619_841470_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZI28799.1|841850_842510_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZI28800.1|842597_842750_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28801.1|842858_843026_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28802.1|843037_843718_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZI28803.1|843999_844716_+	flagellar brake protein	NA	NA	NA	NA	NA
AZI28804.1|844730_846032_-	phospholipase	NA	NA	NA	NA	NA
AZI28805.1|848176_851065_+	HD domain-containing protein	NA	NA	NA	NA	NA
AZI28806.1|851288_852641_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZI28807.1|852669_853191_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZI28808.1|853187_854642_+	carboxylase	NA	NA	NA	NA	NA
AZI28809.1|854676_854925_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28810.1|855030_855906_+	amidohydrolase	NA	NA	NA	NA	NA
AZI28811.1|855931_856987_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI28812.1|856999_857791_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28813.1|857823_859194_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZI28814.1|860370_861321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28815.1|861373_861595_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28816.1|861754_861967_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28817.1|862086_863205_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZI28818.1|863301_863517_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28819.1|863710_863962_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28820.1|864074_865025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28821.1|865021_865405_-	ferredoxin	NA	NA	NA	NA	NA
AZI28822.1|865459_867277_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZI28823.1|867423_868251_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZI28824.1|868296_869277_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZI28825.1|869273_869486_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28826.1|869482_870664_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZI28827.1|870827_871562_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZI28828.1|871563_874176_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
AZI28829.1|874311_876225_-	S9 family peptidase	NA	NA	NA	NA	NA
AZI31535.1|876840_877251_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZI28830.1|877348_878434_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZI28831.1|878532_879483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	902661	972949	4126211	transposase	Streptococcus_phage(14.29%)	55	NA	NA
AZI28856.1|902661_903612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28857.1|903692_904604_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZI28858.1|904664_905810_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZI28859.1|905829_906744_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZI28860.1|906815_907565_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZI28861.1|907564_908494_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZI28862.1|908737_910564_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZI28863.1|910646_911288_+	peroxiredoxin	NA	NA	NA	NA	NA
AZI28864.1|911477_912512_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI28865.1|914348_915248_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	1.2e-23
AZI31536.1|916229_917138_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZI28866.1|918625_919900_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
AZI28867.1|920053_920434_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28868.1|920441_921314_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZI28869.1|921619_922000_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZI28870.1|922210_922936_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZI28871.1|923031_923982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28872.1|924086_925136_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZI31537.1|925273_926290_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI28873.1|927798_928371_-	chorismate lyase	NA	NA	NA	NA	NA
AZI28874.1|928430_929162_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZI31538.1|929213_930131_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28875.1|930938_934118_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZI28876.1|935567_935819_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZI28877.1|935964_936615_-	SCO family protein	NA	NA	NA	NA	NA
AZI28878.1|936765_938880_-	M3 family peptidase	NA	NA	NA	NA	NA
AZI28879.1|938955_939807_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZI28880.1|939803_940430_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZI28881.1|940426_942181_-	PAS domain S-box protein	NA	NA	NA	NA	NA
AZI28882.1|942473_945179_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZI28883.1|945191_946853_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZI28884.1|946865_948656_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZI28885.1|948877_950053_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
AZI28886.1|950095_951046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28887.1|951144_951885_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZI28888.1|952079_954116_+	transketolase	NA	NA	NA	NA	NA
AZI28889.1|954133_955144_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZI28890.1|955261_956455_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZI28891.1|956484_957258_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZI28892.1|957254_958445_-	acetate kinase	NA	NA	NA	NA	NA
AZI28893.1|958470_959409_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZI28894.1|959405_961754_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZI28895.1|961908_962616_-	glutathione transferase	NA	NA	NA	NA	NA
AZI28896.1|962653_963787_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI28897.1|964063_964612_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZI28898.1|964630_965116_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZI28899.1|965293_966232_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZI28900.1|966234_966552_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZI28901.1|966597_967542_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28902.1|969223_969874_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZI28903.1|969927_970263_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28904.1|970259_971120_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZI28905.1|971136_971418_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28906.1|971491_971755_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZI28907.1|971998_972949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	985167	1042534	4126211	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
AZI31539.1|985167_986184_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI31540.1|987014_988022_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZI28920.1|988018_989662_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZI28921.1|989658_990561_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZI28922.1|990686_991160_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZI28923.1|991149_992172_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZI28924.1|992168_993596_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZI31541.1|994533_995550_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI28925.1|995882_996818_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZI28926.1|996867_998748_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZI28927.1|998814_999159_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZI28928.1|999303_1000440_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZI28929.1|1000436_1001510_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AZI28930.1|1001667_1003104_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZI28931.1|1003194_1003836_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZI31542.1|1004171_1005188_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI28932.1|1005520_1008253_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZI28933.1|1008319_1009741_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AZI28934.1|1010004_1010721_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28935.1|1010805_1011123_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZI28936.1|1011163_1011577_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZI28937.1|1011578_1011938_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28938.1|1011980_1013525_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZI28939.1|1013608_1014439_+	transglycosylase	NA	NA	NA	NA	NA
AZI28940.1|1014473_1015628_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZI28941.1|1015670_1016543_+	hypothetical protein	NA	NA	NA	NA	NA
AZI28942.1|1016659_1018948_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZI28943.1|1020154_1020619_+	barstar family protein 2	NA	NA	NA	NA	NA
AZI28944.1|1020645_1021596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28945.1|1021963_1022740_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZI28946.1|1022784_1023642_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
AZI28947.1|1023663_1024680_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZI28948.1|1024814_1025855_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZI28949.1|1026049_1028131_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZI28950.1|1028366_1029860_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZI28951.1|1030090_1030885_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZI28952.1|1031105_1032464_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZI28953.1|1032460_1033303_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZI28954.1|1033321_1035208_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZI28955.1|1035445_1036078_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
AZI28956.1|1036096_1036699_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
AZI28957.1|1036850_1037801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI28958.1|1038603_1039404_-	hypothetical protein	NA	NA	NA	NA	NA
AZI28959.1|1039447_1040434_-	homoserine kinase	NA	NA	NA	NA	NA
AZI28960.1|1040573_1041587_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZI28961.1|1041583_1042534_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	1222760	1291248	4126211	transposase	Planktothrix_phage(33.33%)	58	NA	NA
AZI29100.1|1222760_1223711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29101.1|1224479_1225118_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZI29102.1|1226007_1226454_+	glutamate racemase	NA	NA	NA	NA	NA
AZI29103.1|1226535_1227237_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZI29104.1|1227237_1228005_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZI29105.1|1228001_1229240_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZI29106.1|1229239_1230166_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZI29107.1|1230268_1231384_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI29108.1|1231399_1232350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29109.1|1232336_1232579_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29110.1|1232703_1233285_-	VUT family protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZI29111.1|1233281_1234115_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZI29112.1|1234325_1235639_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZI29113.1|1235815_1236697_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZI29114.1|1236716_1237568_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZI29115.1|1237620_1238709_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZI29116.1|1238819_1239947_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI29117.1|1240181_1240793_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZI29118.1|1240891_1241842_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI29119.1|1242063_1242441_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZI29120.1|1242588_1243086_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZI29121.1|1243082_1243610_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZI29122.1|1243743_1244559_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI29123.1|1244571_1245753_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZI29124.1|1245800_1246694_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZI29125.1|1246820_1247291_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29126.1|1247416_1248244_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZI29127.1|1248272_1249049_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZI29128.1|1249045_1249339_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZI29129.1|1249335_1249800_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZI29130.1|1249811_1250597_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZI29131.1|1250622_1251123_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZI29132.1|1251205_1252384_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZI29133.1|1254011_1254347_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZI29134.1|1254534_1255983_+	CoA transferase	NA	NA	NA	NA	NA
AZI29135.1|1256040_1256385_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZI29136.1|1256491_1257031_-	peroxiredoxin	NA	NA	NA	NA	NA
AZI29137.1|1257123_1258074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29138.1|1258813_1259245_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29139.1|1259426_1259831_-	DoxX family protein	NA	NA	NA	NA	NA
AZI29140.1|1261067_1261391_+	hypothetical protein	NA	NA	NA	NA	NA
AZI29141.1|1261393_1262281_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZI29142.1|1262313_1262739_-	universal stress protein	NA	NA	NA	NA	NA
AZI29143.1|1262810_1263164_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29144.1|1263403_1263910_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29145.1|1263948_1265280_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZI29146.1|1265339_1266155_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZI29147.1|1266151_1267006_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZI29148.1|1270068_1272612_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZI29149.1|1273978_1275733_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZI29150.1|1275729_1277850_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZI29151.1|1277854_1280050_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
AZI29152.1|1280046_1283388_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZI29153.1|1286190_1287141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29154.1|1287206_1287386_-	hypothetical protein	NA	NA	NA	NA	NA
AZI31549.1|1287502_1288225_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AZI29155.1|1288244_1289390_-	DUF3182 family protein	NA	NA	NA	NA	NA
AZI29156.1|1290297_1291248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	1345976	1400783	4126211	protease,transposase	Mollivirus(16.67%)	56	NA	NA
AZI31551.1|1345976_1346993_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI29198.1|1347039_1347828_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZI29199.1|1347850_1348120_-	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZI29200.1|1348136_1348928_-	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZI29201.1|1348939_1349281_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZI29202.1|1349291_1349792_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZI29203.1|1349784_1350795_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZI29204.1|1350797_1351370_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZI29205.1|1351739_1352690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29206.1|1353891_1354338_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZI29207.1|1354330_1355806_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZI29208.1|1355802_1356558_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZI29209.1|1356550_1357561_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZI29210.1|1357550_1359227_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZI29211.1|1359539_1359872_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZI29212.1|1359885_1360281_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29213.1|1360290_1360617_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZI29214.1|1360613_1360940_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZI29215.1|1360866_1361889_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZI29216.1|1361885_1362266_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZI29217.1|1362283_1362712_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZI29218.1|1362719_1364093_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZI29219.1|1364233_1364611_-	flagellar protein FlaG	NA	NA	NA	NA	NA
AZI29220.1|1364873_1366181_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZI29221.1|1366241_1367072_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZI29222.1|1367068_1367557_+	CvpA family protein	NA	NA	NA	NA	NA
AZI29223.1|1367598_1369119_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZI31552.1|1369162_1369639_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZI29224.1|1370442_1373040_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
AZI29225.1|1373069_1373891_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZI29226.1|1374617_1375367_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZI29227.1|1375499_1376429_+	elongation factor Ts	NA	NA	NA	NA	NA
AZI31553.1|1376526_1377243_+	UMP kinase	NA	NA	NA	NA	NA
AZI29228.1|1377257_1377818_+	ribosome recycling factor	NA	NA	NA	NA	NA
AZI29229.1|1377855_1378749_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZI29230.1|1378768_1379626_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZI29231.1|1379622_1380822_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZI29232.1|1380861_1382196_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZI29233.1|1382248_1384585_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZI29234.1|1384710_1385274_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
AZI29235.1|1385282_1386374_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZI29236.1|1386445_1386901_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
AZI29237.1|1386901_1387696_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZI29238.1|1387692_1388874_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZI29239.1|1388860_1389466_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZI29240.1|1389462_1390236_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZI29241.1|1390247_1391075_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZI29242.1|1391236_1393600_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZI29243.1|1393667_1394387_-	glutamine amidotransferase	NA	NA	NA	NA	NA
AZI29244.1|1394510_1394936_+	NfeD family protein	NA	NA	NA	NA	NA
AZI29245.1|1394970_1395921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29246.1|1396019_1396970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29247.1|1397087_1398014_+	paraslipin	NA	NA	NA	NA	NA
AZI29248.1|1398079_1399237_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZI29249.1|1399217_1399685_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZI29250.1|1399832_1400783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	2142127	2197363	4126211	protease,transposase	Lake_Baikal_phage(25.0%)	50	NA	NA
AZI29851.1|2142127_2143078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29852.1|2143278_2144088_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZI29853.1|2144212_2145163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29854.1|2145159_2146053_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZI29855.1|2146177_2146372_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZI29856.1|2146371_2146713_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZI29857.1|2146722_2148585_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZI29858.1|2148714_2149227_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
AZI29859.1|2149229_2149553_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZI29860.1|2149554_2149965_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZI29861.1|2150002_2151214_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZI29862.1|2151231_2151744_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZI29863.1|2151959_2152451_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZI29864.1|2152703_2154740_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZI29865.1|2154817_2156020_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZI29866.1|2156070_2156799_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZI29867.1|2158356_2159307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31575.1|2159877_2160090_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29868.1|2160107_2160839_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI29869.1|2160873_2161515_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZI29870.1|2161507_2162224_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
AZI29871.1|2164388_2165165_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI29872.1|2165186_2166344_-	thiolase	NA	NA	NA	NA	NA
AZI29873.1|2166340_2166772_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29874.1|2166768_2167572_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZI29875.1|2167585_2168041_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZI29876.1|2168053_2169025_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI29877.1|2169090_2170314_-	CoA transferase	NA	NA	NA	NA	NA
AZI29878.1|2170541_2171492_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI29879.1|2171615_2174069_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZI29880.1|2174257_2175562_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZI29881.1|2175666_2176320_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZI29882.1|2176322_2177633_-	trigger factor	NA	NA	NA	NA	NA
AZI29883.1|2177811_2178390_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZI29884.1|2178501_2178702_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZI29885.1|2179047_2179614_-	DUF924 family protein	NA	NA	NA	NA	NA
AZI29886.1|2179697_2179901_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZI29887.1|2180207_2180528_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29888.1|2180569_2180851_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29889.1|2180925_2182182_-	autotransporter Phg	NA	NA	NA	NA	NA
AZI29890.1|2182564_2182894_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZI29891.1|2184464_2185286_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZI29892.1|2185285_2186425_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZI29893.1|2186431_2187328_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZI29894.1|2187324_2189250_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZI29895.1|2189609_2192222_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZI29896.1|2192274_2194575_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZI29897.1|2194571_2195780_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZI29898.1|2196041_2196416_+	hypothetical protein	NA	NA	NA	NA	NA
AZI29899.1|2196412_2197363_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	2206725	2267625	4126211	tRNA,transposase	uncultured_Mediterranean_phage(14.29%)	56	NA	NA
AZI29907.1|2206725_2207676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29908.1|2207662_2207842_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29909.1|2207786_2208227_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZI29910.1|2208355_2209585_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZI29911.1|2209623_2210445_-	DUF455 family protein	NA	NA	NA	NA	NA
AZI29912.1|2210498_2211650_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZI29913.1|2211741_2212230_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZI29914.1|2214756_2217330_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZI29915.1|2217400_2219974_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZI29916.1|2220239_2220440_+	CsbD family protein	NA	NA	NA	NA	NA
AZI29917.1|2220471_2220633_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZI29918.1|2220690_2221029_+	BON domain-containing protein	NA	NA	NA	NA	NA
AZI29919.1|2221177_2222128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29920.1|2222226_2222946_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZI31576.1|2223022_2223571_+	arylesterase	NA	NA	NA	NA	NA
AZI29921.1|2223552_2225568_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZI29922.1|2225750_2226500_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZI29923.1|2226512_2227376_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZI29924.1|2227379_2228795_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZI29925.1|2228928_2229657_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZI29926.1|2229795_2229996_-	copper chaperone	NA	NA	NA	NA	NA
AZI29927.1|2230171_2230570_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZI29928.1|2230593_2231994_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZI31577.1|2232112_2232865_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29929.1|2233153_2233831_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29930.1|2233857_2234637_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZI29931.1|2234633_2235518_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZI31578.1|2235535_2236225_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZI29932.1|2236299_2237058_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZI29933.1|2237183_2237831_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
AZI31579.1|2238098_2239115_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI29934.1|2239212_2240253_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZI29935.1|2240387_2241680_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZI29936.1|2243039_2243423_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZI29937.1|2243440_2244028_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZI29938.1|2244065_2245016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29939.1|2246000_2246774_-	ABC transporter permease	NA	NA	NA	NA	NA
AZI29940.1|2246770_2247769_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI29941.1|2247853_2248630_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZI29942.1|2248785_2250453_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZI29943.1|2250770_2251895_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI29944.1|2252021_2252645_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
AZI29945.1|2252641_2254543_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
AZI29946.1|2254591_2255386_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZI29947.1|2255398_2256400_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZI29948.1|2256396_2256903_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZI29949.1|2256895_2257744_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZI29950.1|2257841_2258384_-	hypothetical protein	NA	NA	NA	NA	NA
AZI29951.1|2258427_2259378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI29952.1|2259533_2259860_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZI29953.1|2259856_2260141_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZI29954.1|2260137_2260617_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZI29955.1|2260613_2262242_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZI29956.1|2262238_2262583_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZI29957.1|2262582_2265516_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZI29958.1|2266674_2267625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	2348215	2414539	4126211	transposase	Ectocarpus_siliculosus_virus(10.0%)	58	NA	NA
AZI30014.1|2348215_2349166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30015.1|2349185_2350091_-	pirin family protein	NA	NA	NA	NA	NA
AZI30016.1|2350168_2350867_-	pirin family protein	NA	NA	NA	NA	NA
AZI30017.1|2351026_2351971_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30018.1|2351980_2353471_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZI30019.1|2353467_2354535_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZI30020.1|2354598_2356011_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZI30021.1|2356196_2357417_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZI30022.1|2357438_2358389_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30023.1|2358487_2359138_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
AZI30024.1|2359255_2361058_+	EAL domain-containing protein	NA	NA	NA	NA	NA
AZI30025.1|2360935_2362675_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZI30026.1|2362709_2363615_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30027.1|2363796_2365173_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZI30028.1|2365339_2366080_-	ribonuclease PH	NA	NA	NA	NA	NA
AZI30029.1|2366216_2367143_+	YicC family protein	NA	NA	NA	NA	NA
AZI30030.1|2367415_2367571_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30031.1|2367583_2367712_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30032.1|2367708_2367993_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZI30033.1|2368051_2369542_-	AMP nucleosidase	NA	NA	NA	NA	NA
AZI30034.1|2369786_2370386_+	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZI30035.1|2370390_2371161_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI30036.1|2371398_2372112_+	cytochrome C	NA	NA	NA	NA	NA
AZI30037.1|2372108_2373026_+	cytochrome C	NA	NA	NA	NA	NA
AZI30038.1|2373146_2373794_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZI30039.1|2373835_2374039_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZI30040.1|2374063_2376343_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZI30041.1|2376355_2377084_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZI30042.1|2377080_2377740_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZI30043.1|2377808_2378561_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZI30044.1|2378742_2379693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30045.1|2380585_2381491_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZI30046.1|2381502_2382630_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
AZI30047.1|2382718_2383333_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
AZI30048.1|2383986_2385174_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZI31586.1|2385170_2387768_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZI30049.1|2388022_2388238_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZI30050.1|2388693_2389248_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZI30051.1|2389515_2390076_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZI30052.1|2390187_2391492_+	peptidase	NA	NA	NA	NA	NA
AZI30053.1|2391488_2393000_+	thiol oxidoreductase	NA	NA	NA	NA	NA
AZI30054.1|2393105_2394107_+	aminopeptidase	NA	NA	NA	NA	NA
AZI30055.1|2394087_2395209_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZI30056.1|2395132_2395321_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30057.1|2395307_2396258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30058.1|2396254_2396881_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZI31587.1|2396946_2397792_+	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZI30059.1|2397895_2398495_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30060.1|2398491_2399256_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZI30061.1|2399325_2400276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30062.1|2400374_2400983_-	recombination protein RecR	NA	NA	NA	NA	NA
AZI30063.1|2401033_2401360_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZI31588.1|2401406_2403632_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZI30064.1|2404299_2407704_-	nuclease	NA	NA	NA	NA	NA
AZI30065.1|2407716_2410377_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30066.1|2410580_2411783_-	MFS transporter	NA	NA	NA	NA	NA
AZI30067.1|2412469_2413582_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZI30068.1|2413588_2414539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	2442584	2504885	4126211	tRNA,transposase	Salmonella_phage(18.18%)	55	NA	NA
AZI30099.1|2442584_2443535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30100.1|2443633_2444404_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZI30101.1|2444400_2445072_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZI30102.1|2445068_2445710_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZI30103.1|2445722_2446643_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZI30104.1|2446803_2447964_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI30105.1|2448005_2448956_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
AZI30106.1|2449554_2449779_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30107.1|2449943_2451638_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZI31591.1|2451759_2452029_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZI30108.1|2452144_2452543_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZI30109.1|2452553_2453510_-	glutathione synthetase	NA	NA	NA	NA	NA
AZI30110.1|2453646_2454192_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZI30111.1|2454212_2456162_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZI30112.1|2456549_2457326_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZI30113.1|2457331_2457724_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30114.1|2458145_2459096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30115.1|2459092_2460190_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZI30116.1|2460221_2461172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30117.1|2462953_2464195_-	MFS transporter	NA	NA	NA	NA	NA
AZI30118.1|2464206_2464980_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZI30119.1|2465006_2465957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30120.1|2466055_2466838_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZI30121.1|2466926_2468153_-	transporter	NA	NA	NA	NA	NA
AZI30122.1|2468878_2470264_+	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZI30123.1|2470282_2470888_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZI30124.1|2470884_2472741_+	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZI30125.1|2472737_2473538_+	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZI30126.1|2473552_2474746_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZI30127.1|2474813_2475788_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZI30128.1|2475910_2477134_+	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZI30129.1|2477244_2479449_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZI30130.1|2479743_2480403_+	NAAT family transporter	NA	NA	NA	NA	NA
AZI30131.1|2480410_2480617_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30132.1|2480955_2481711_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZI30133.1|2481726_2481888_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30134.1|2481981_2482497_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZI30135.1|2482769_2483087_+	virulence factor	NA	NA	NA	NA	NA
AZI30136.1|2483274_2483523_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30137.1|2483801_2485157_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZI30138.1|2485203_2486583_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZI30139.1|2486645_2487278_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
AZI30140.1|2487277_2489638_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZI30141.1|2489679_2490639_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZI30142.1|2490625_2491312_+	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZI30143.1|2491308_2491641_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZI30144.1|2491756_2492707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30145.1|2492703_2494770_-	cation acetate symporter	NA	NA	NA	NA	NA
AZI30146.1|2494769_2495042_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZI30147.1|2495736_2495826_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZI30148.1|2495825_2497610_+	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZI30149.1|2497633_2499799_+	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZI30150.1|2499809_2500409_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZI30151.1|2503230_2503926_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZI30152.1|2503934_2504885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	2591002	2631671	4126211	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
AZI30228.1|2591002_2591953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30229.1|2592063_2592246_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30230.1|2592345_2592942_-	lipoprotein	NA	NA	NA	NA	NA
AZI30231.1|2593125_2594217_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30232.1|2594716_2595127_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30233.1|2595185_2595527_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZI30234.1|2595532_2597950_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZI30235.1|2597962_2598985_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZI30236.1|2599059_2599419_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZI30237.1|2599434_2599632_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZI30238.1|2599967_2600918_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30239.1|2601112_2601562_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZI30240.1|2601558_2602509_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30241.1|2602619_2604068_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZI30242.1|2604182_2604464_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30243.1|2604567_2605518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30244.1|2605762_2606476_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZI30245.1|2606598_2606826_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZI30246.1|2607120_2607759_-	DedA family protein	NA	NA	NA	NA	NA
AZI30247.1|2607831_2608902_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZI30248.1|2608898_2609849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30249.1|2610264_2610789_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZI30250.1|2610792_2611062_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30251.1|2611260_2612322_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZI30252.1|2612405_2614040_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZI31599.1|2614041_2614845_-	ABC transporter permease	NA	NA	NA	NA	NA
AZI30253.1|2614873_2615833_-	ABC transporter permease	NA	NA	NA	NA	NA
AZI30254.1|2615836_2617351_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI31600.1|2617387_2618392_-	M20 family peptidase	NA	NA	NA	NA	NA
AZI30255.1|2618823_2619294_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZI30256.1|2619329_2619941_-	LysE family translocator	NA	NA	NA	NA	NA
AZI30257.1|2619971_2620595_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZI30258.1|2620675_2622208_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZI30259.1|2622242_2623484_-	MFS transporter	NA	NA	NA	NA	NA
AZI30260.1|2623527_2624559_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZI30261.1|2624555_2625725_-	amine oxidase	NA	NA	NA	NA	NA
AZI30262.1|2625718_2626399_-	anti-sigma factor	NA	NA	NA	NA	NA
AZI30263.1|2626560_2627403_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30264.1|2627565_2628537_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZI30265.1|2628708_2629587_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZI30266.1|2629609_2630680_-	FUSC family protein	NA	NA	NA	NA	NA
AZI30267.1|2630720_2631671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	2693244	2829961	4126211	protease,transposase	Agrobacterium_phage(14.29%)	102	NA	NA
AZI30318.1|2693244_2694195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31602.1|2694191_2701853_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZI30319.1|2702093_2706140_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZI30320.1|2706452_2707034_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZI30321.1|2707030_2708329_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZI30322.1|2708408_2709437_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
AZI30323.1|2709360_2709711_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30324.1|2710646_2711597_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30325.1|2711913_2712519_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZI30326.1|2712572_2713886_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZI30327.1|2713960_2714431_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
AZI30328.1|2714430_2715219_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZI30329.1|2715229_2716882_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZI30330.1|2716969_2717920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30331.1|2719081_2719588_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZI30332.1|2719584_2720349_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZI30333.1|2720364_2720649_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZI30334.1|2720713_2721703_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZI30335.1|2721874_2722804_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZI30336.1|2722775_2723462_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZI30337.1|2723495_2724041_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZI30338.1|2724085_2725351_+	M48 family peptidase	NA	NA	NA	NA	NA
AZI30339.1|2725347_2726250_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZI30340.1|2727431_2728376_-	ABC transporter permease	NA	NA	NA	NA	NA
AZI30341.1|2728470_2729988_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI30342.1|2730029_2731658_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZI30343.1|2731765_2732647_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30344.1|2735759_2736134_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZI30345.1|2736158_2736497_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZI30346.1|2736540_2738175_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZI30347.1|2738213_2739560_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZI30348.1|2739667_2741089_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZI30349.1|2741158_2741743_-	nitroreductase	NA	NA	NA	NA	NA
AZI30350.1|2741845_2742796_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30351.1|2742930_2744037_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30352.1|2744047_2745145_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZI30353.1|2745289_2746495_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZI30354.1|2746501_2747023_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZI30355.1|2747019_2747511_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZI30356.1|2747507_2747759_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZI30357.1|2747739_2748225_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZI30358.1|2748360_2751822_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
AZI30359.1|2751818_2752724_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZI30360.1|2752733_2753165_-	lipoprotein	NA	NA	NA	NA	NA
AZI30361.1|2753411_2753915_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZI30362.1|2753926_2755393_+	MFS transporter	NA	NA	NA	NA	NA
AZI30363.1|2755467_2756343_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZI30364.1|2756339_2757347_-	biotin synthase	NA	NA	NA	NA	NA
AZI30365.1|2757814_2758120_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZI30366.1|2758210_2758801_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZI31603.1|2758991_2760008_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI30367.1|2760199_2762536_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZI30368.1|2762618_2763053_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZI30369.1|2763151_2764102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30370.1|2764200_2765151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30371.1|2765147_2765942_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZI30372.1|2765973_2766678_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI30373.1|2766752_2767553_-	SURF1 family protein	NA	NA	NA	NA	NA
AZI30374.1|2767549_2767957_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZI30375.1|2767953_2768595_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZI30376.1|2768587_2770609_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZI30377.1|2771848_2773180_+	MFS transporter	NA	NA	NA	NA	NA
AZI30378.1|2773176_2774127_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30379.1|2775833_2776100_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
AZI30380.1|2776807_2777146_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZI30381.1|2781698_2782301_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30382.1|2782397_2783687_+	MFS transporter	NA	NA	NA	NA	NA
AZI30383.1|2783744_2784476_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZI30384.1|2784472_2785276_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZI30385.1|2785272_2786361_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZI30386.1|2786357_2787287_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZI30387.1|2787435_2788581_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI30388.1|2788602_2789553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30389.1|2789883_2793705_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZI30390.1|2793861_2794530_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
AZI30391.1|2794534_2796208_-	MCE family protein	NA	NA	NA	NA	NA
AZI30392.1|2796226_2797546_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
AZI30393.1|2797550_2799902_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZI30394.1|2799921_2802090_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZI30395.1|2802086_2807276_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZI30396.1|2807365_2807680_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZI30397.1|2807907_2808153_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZI30398.1|2808247_2808766_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZI30399.1|2808865_2810071_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZI30400.1|2810186_2811584_-	chloride channel protein	NA	NA	NA	NA	NA
AZI30401.1|2811700_2812279_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZI30402.1|2812351_2813743_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZI30403.1|2813910_2814861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30404.1|2815141_2815762_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZI30405.1|2815758_2816172_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZI30406.1|2816168_2817212_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZI30407.1|2817267_2817456_+	Trm112 family protein	NA	NA	NA	NA	NA
AZI30408.1|2817465_2818230_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZI30409.1|2818320_2818977_+	adenylate kinase	NA	NA	NA	NA	NA
AZI30410.1|2819068_2819827_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZI30411.1|2819852_2821454_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZI30412.1|2821654_2822659_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZI30413.1|2822759_2823023_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZI30414.1|2823140_2823917_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZI30415.1|2824507_2825458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30416.1|2827841_2828954_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
AZI30417.1|2829010_2829961_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	2860347	2904038	4126211	transposase	Planktothrix_phage(33.33%)	42	NA	NA
AZI30447.1|2860347_2861298_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30448.1|2861284_2861530_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30449.1|2861418_2862315_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZI30450.1|2864592_2866818_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
AZI30451.1|2866982_2868071_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZI30452.1|2868027_2868681_+	ABC transporter permease	NA	NA	NA	NA	NA
AZI30453.1|2868728_2869526_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI30454.1|2870057_2871008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30455.1|2871088_2872237_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
AZI30456.1|2872293_2873244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30457.1|2873230_2873449_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30458.1|2873342_2873648_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZI30459.1|2873676_2874111_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZI30460.1|2874112_2875357_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZI30461.1|2875353_2876064_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZI31604.1|2876078_2876990_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI30462.1|2877352_2877757_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30463.1|2877753_2878212_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30464.1|2878218_2879127_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30465.1|2879123_2879990_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZI30466.1|2879976_2880804_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZI30467.1|2880814_2881942_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZI30468.1|2883019_2884258_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30469.1|2884299_2885562_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
AZI30470.1|2885568_2886321_+	DNA-binding protein	NA	NA	NA	NA	NA
AZI30471.1|2886372_2886558_-	hypothetical protein	NA	NA	NA	NA	NA
AZI31605.1|2886833_2887298_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZI30472.1|2887329_2887989_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZI30473.1|2888133_2890242_+	AsmA family protein	NA	NA	NA	NA	NA
AZI30474.1|2890238_2891189_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30475.1|2891292_2891913_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30476.1|2892016_2892757_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI30477.1|2893891_2895016_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30478.1|2895061_2895430_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30479.1|2895671_2896622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31606.1|2897657_2898200_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30480.1|2898392_2898599_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30481.1|2898585_2899536_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30482.1|2899532_2900498_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30483.1|2900567_2901404_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZI30484.1|2901880_2903026_+	porin	NA	NA	NA	NA	NA
AZI30485.1|2903087_2904038_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	2927950	2996647	4126211	tRNA,protease,transposase	Staphylococcus_phage(28.57%)	53	NA	NA
AZI30507.1|2927950_2929237_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30508.1|2930123_2931026_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
AZI30509.1|2930973_2932194_-	MFS transporter	NA	NA	NA	NA	NA
AZI30510.1|2932190_2932700_-	nucleoside deaminase	NA	NA	NA	NA	NA
AZI30511.1|2932689_2933385_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZI30512.1|2933455_2934325_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30513.1|2934674_2935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30514.1|2936485_2937175_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZI30515.1|2937951_2938914_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZI30516.1|2938917_2939778_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZI30517.1|2939771_2940164_-	RidA family protein	NA	NA	NA	NA	NA
AZI30518.1|2940194_2941367_-	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZI30519.1|2942818_2943616_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30520.1|2943649_2944429_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZI30521.1|2944457_2945330_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30522.1|2945351_2946101_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZI30523.1|2946108_2946966_-	ABC transporter permease	NA	NA	NA	NA	NA
AZI30524.1|2947006_2947570_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI30525.1|2947600_2947897_-	histidine kinase	NA	NA	NA	NA	NA
AZI30526.1|2947977_2948781_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZI30527.1|2948801_2949998_-	CoA transferase	NA	NA	NA	NA	NA
AZI30528.1|2950000_2951002_-	amidase	NA	NA	NA	NA	NA
AZI30529.1|2951106_2951517_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30530.1|2951619_2952282_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30531.1|2952384_2953335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30532.1|2953433_2954384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30533.1|2954380_2955457_-	AI-2E family transporter	NA	NA	NA	NA	NA
AZI30534.1|2955501_2956254_-	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
AZI30535.1|2956816_2957098_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30536.1|2957159_2957855_+	cytochrome B	NA	NA	NA	NA	NA
AZI30537.1|2957939_2958398_-	cytochrome c	NA	NA	NA	NA	NA
AZI30538.1|2958460_2959882_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.3e-109
AZI30539.1|2959996_2960608_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZI30540.1|2960705_2961524_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZI30541.1|2961624_2962740_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AZI30542.1|2962752_2963673_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	30.5	2.7e-26
AZI30543.1|2963843_2964830_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZI30544.1|2964890_2965766_+	hydrolase	NA	NA	NA	NA	NA
AZI30545.1|2966020_2967139_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
AZI30546.1|2967455_2968892_+	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA	NA
AZI30547.1|2968935_2969946_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZI30548.1|2970121_2972335_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZI30549.1|2972337_2973249_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZI30550.1|2973239_2974469_-	glycolate oxidase iron-sulfur subunit	NA	NA	NA	NA	NA
AZI30551.1|2974501_2975611_-	glycolate oxidase subunit GlcE	NA	NA	NA	NA	NA
AZI30552.1|2975622_2977122_-	FAD-binding protein	NA	NA	NA	NA	NA
AZI30553.1|2977256_2978666_-	FAD-binding protein	NA	NA	NA	NA	NA
AZI30554.1|2978795_2991449_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.5	1.2e-15
AZI30555.1|2991470_2992544_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A2I6UFP9	Klebsiella_phage	46.4	3.9e-77
AZI30556.1|2992800_2994261_-|protease	metalloprotease TldD	protease	NA	NA	NA	NA
AZI30557.1|2994271_2995102_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AZI30558.1|2995226_2995598_+	H-NS histone family protein	NA	NA	NA	NA	NA
AZI30559.1|2995696_2996647_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	3089505	3162493	4126211	tRNA,holin,transposase	Xanthomonas_phage(14.29%)	59	NA	NA
AZI30642.1|3089505_3090456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30643.1|3090464_3091013_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
AZI30644.1|3091009_3091618_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZI30645.1|3091800_3092271_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZI30646.1|3092277_3093537_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZI30647.1|3093589_3094402_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI30648.1|3094516_3095071_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZI30649.1|3095080_3096070_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI30650.1|3096249_3096969_-	VOC family protein	NA	NA	NA	NA	NA
AZI30651.1|3096985_3099721_-	protein translocase subunit SecA	NA	NA	NA	NA	NA
AZI31613.1|3099900_3100887_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
AZI30652.1|3100928_3101423_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZI30653.1|3101534_3102458_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
AZI30654.1|3102686_3103871_-	cell division protein FtsZ	NA	NA	NA	NA	NA
AZI30655.1|3104059_3105286_-	cell division protein FtsA	NA	NA	NA	NA	NA
AZI30656.1|3105290_3106112_-	cell division protein FtsQ	NA	NA	NA	NA	NA
AZI30657.1|3106124_3107075_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZI30658.1|3107071_3108478_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
AZI30659.1|3108474_3109548_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AZI30660.1|3109544_3110738_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
AZI30661.1|3110734_3112267_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
AZI30662.1|3112263_3113433_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
AZI30663.1|3113422_3116260_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
AZI31614.1|3116256_3117957_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AZI30664.1|3117983_3118262_-	cell division protein FtsL	NA	NA	NA	NA	NA
AZI30665.1|3118261_3119356_-	ribosomal RNA small subunit methyltransferase H	NA	NA	NA	NA	NA
AZI30666.1|3119364_3119856_-	transcriptional regulator MraZ	NA	NA	NA	NA	NA
AZI30667.1|3120595_3122404_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
AZI30668.1|3122443_3123523_-	dihydroorotase	NA	NA	NA	NA	NA
AZI30669.1|3123519_3124713_-	amidohydrolase	NA	NA	NA	NA	NA
AZI30670.1|3124862_3125141_+	DNA topoisomerase III	NA	NA	NA	NA	NA
AZI30671.1|3125469_3125862_-	hypothetical protein	NA	NA	NA	NA	NA
AZI31615.1|3132587_3133064_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZI30672.1|3133216_3134329_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
AZI30673.1|3134396_3134957_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZI30674.1|3134980_3135313_-	cytochrome C	NA	NA	NA	NA	NA
AZI31616.1|3135296_3136985_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AZI30675.1|3137104_3137893_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AZI30676.1|3138600_3139551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30677.1|3139995_3140307_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZI30678.1|3140306_3140837_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30679.1|3140999_3141950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30680.1|3142239_3142704_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZI30681.1|3142718_3144224_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZI30682.1|3144477_3146085_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZI30683.1|3146140_3147046_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZI30684.1|3147486_3148437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30685.1|3148575_3149328_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZI30686.1|3149566_3151291_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZI30687.1|3151310_3152570_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZI30688.1|3152584_3153679_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZI30689.1|3153675_3155802_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZI30690.1|3155814_3156495_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZI31617.1|3156772_3158146_+	MFS transporter	NA	NA	NA	NA	NA
AZI30691.1|3158147_3159167_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZI30692.1|3159230_3160202_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30693.1|3160266_3161217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30694.1|3161315_3162158_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZI30695.1|3162157_3162493_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 21
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	3180916	3233275	4126211	integrase,protease,transposase	Erwinia_phage(25.0%)	42	3218941:3218959	3238829:3238847
AZI30713.1|3180916_3181456_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
AZI30714.1|3181477_3182812_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZI30715.1|3182825_3183131_-	RND transporter	NA	NA	NA	NA	NA
AZI30716.1|3183555_3184137_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AZI30717.1|3184218_3185169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30718.1|3185266_3186217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31619.1|3186529_3188008_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZI30719.1|3188014_3189124_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZI30720.1|3189135_3189816_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZI30721.1|3189837_3190593_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI30722.1|3190728_3191613_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZI30723.1|3191700_3192282_+	zf-CGNR multi-domain protein	NA	NA	NA	NA	NA
AZI30724.1|3192374_3192497_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30725.1|3192542_3192842_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZI31620.1|3192993_3193419_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30726.1|3195625_3196129_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZI30727.1|3196144_3197095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30728.1|3197081_3197279_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30729.1|3197622_3198396_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI30730.1|3198528_3199539_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI30731.1|3199690_3201346_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZI30732.1|3201400_3201742_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZI30733.1|3201755_3203195_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZI30734.1|3203327_3204143_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30735.1|3204161_3204350_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30736.1|3204336_3205287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30737.1|3206674_3207622_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30738.1|3207848_3208589_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30739.1|3208674_3209625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30740.1|3211066_3212638_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZI30741.1|3212970_3214824_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30742.1|3214868_3217433_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZI30743.1|3217851_3218802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
3218941:3218959	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZI30744.1|3221667_3222162_-	DUF4276 family protein	NA	NA	NA	NA	NA
AZI30745.1|3222178_3223129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30746.1|3223115_3223316_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30747.1|3223312_3224524_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZI30748.1|3224539_3227491_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZI30749.1|3227492_3230612_-	restriction endonuclease	NA	NA	NA	NA	NA
AZI31621.1|3230608_3230749_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZI30750.1|3230759_3231806_-	Fic family protein	NA	NA	NA	NA	NA
AZI30751.1|3232147_3233275_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
3238829:3238847	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 22
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	3285032	3338773	4126211	transposase	Staphylococcus_phage(33.33%)	49	NA	NA
AZI30791.1|3285032_3285983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30792.1|3286387_3287032_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZI30793.1|3287056_3287641_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZI30794.1|3287741_3288359_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZI30795.1|3288361_3290077_-	urease subunit alpha	NA	NA	NA	NA	NA
AZI30796.1|3290073_3290382_-	urease subunit beta	NA	NA	NA	NA	NA
AZI30797.1|3290398_3291034_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
AZI30798.1|3291060_3291363_-	urease subunit gamma	NA	NA	NA	NA	NA
AZI30799.1|3291463_3292318_-	urease accessory protein	NA	NA	NA	NA	NA
AZI30800.1|3292505_3292730_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30801.1|3292899_3293172_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZI30802.1|3293589_3293997_-	GFA family protein	NA	NA	NA	NA	NA
AZI30803.1|3294366_3295161_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30804.1|3295261_3296497_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZI30805.1|3296565_3297582_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI30806.1|3297578_3298970_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZI30807.1|3298966_3300163_+	MFS transporter	NA	NA	NA	NA	NA
AZI30808.1|3300159_3301698_-	SpoVR family protein	NA	NA	NA	NA	NA
AZI30809.1|3301694_3302954_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
AZI30810.1|3304894_3305845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30811.1|3306611_3307706_-	CoA transferase	NA	NA	NA	NA	NA
AZI30812.1|3307698_3309033_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZI30813.1|3308986_3309670_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30814.1|3309695_3310859_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZI30815.1|3310855_3311857_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZI30816.1|3311856_3312729_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZI30817.1|3312725_3313475_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZI30818.1|3313471_3314263_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZI30819.1|3314259_3315399_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI30820.1|3315707_3316460_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZI30821.1|3316493_3317276_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
AZI30822.1|3317279_3317669_+	DNA-binding protein	NA	NA	NA	NA	NA
AZI30823.1|3318808_3319672_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZI30824.1|3319707_3320796_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
AZI30825.1|3320792_3321743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30826.1|3321729_3322143_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30827.1|3322096_3325075_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30828.1|3326001_3326880_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZI30829.1|3328828_3329779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30830.1|3329775_3330243_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZI30831.1|3330285_3331056_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZI30832.1|3331076_3331877_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZI30833.1|3331887_3333297_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AZI30834.1|3333391_3334177_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZI31624.1|3334416_3335433_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI30835.1|3335540_3335933_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZI30836.1|3336070_3336751_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
AZI30837.1|3336755_3337754_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI30838.1|3337822_3338773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	3344928	3404228	4126211	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZI30842.1|3344928_3346692_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZI30843.1|3346803_3347682_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZI30844.1|3347794_3348610_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZI30845.1|3348613_3348865_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
AZI31625.1|3348949_3349966_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI30846.1|3350296_3350518_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
AZI30847.1|3352878_3353796_-	DMT family transporter	NA	NA	NA	NA	NA
AZI30848.1|3354293_3355502_-	ABC transporter permease	NA	NA	NA	NA	NA
AZI30849.1|3355581_3357153_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI30850.1|3357270_3358206_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZI30851.1|3358394_3359339_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZI30852.1|3359407_3359623_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30853.1|3359906_3365624_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZI30854.1|3365629_3366757_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZI30855.1|3366812_3367439_+	aminotransferase	NA	NA	NA	NA	NA
AZI31626.1|3367710_3368727_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI30856.1|3368822_3369533_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI30857.1|3369529_3370519_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI30858.1|3370650_3372246_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZI30859.1|3372248_3372986_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30860.1|3373141_3374014_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZI30861.1|3374282_3375503_+	MFS transporter	NA	NA	NA	NA	NA
AZI30862.1|3375499_3376159_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZI30863.1|3376230_3376863_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZI30864.1|3376892_3377411_+	flavin reductase	NA	NA	NA	NA	NA
AZI30865.1|3377421_3378531_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZI30866.1|3378577_3379432_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZI30867.1|3379433_3380336_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30868.1|3381558_3382509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30869.1|3384265_3385255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30870.1|3385430_3386219_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZI30871.1|3386215_3387247_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZI30872.1|3387265_3387829_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZI30873.1|3387884_3389405_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZI30874.1|3389668_3390373_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZI30875.1|3390380_3391118_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZI30876.1|3391223_3391598_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZI30877.1|3391640_3392930_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30878.1|3392926_3394096_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
AZI30879.1|3394092_3394932_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZI30880.1|3394991_3395927_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZI30881.1|3395939_3396890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30882.1|3396988_3397951_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZI30883.1|3397982_3398342_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZI30884.1|3398466_3399369_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZI30885.1|3399370_3401143_-	M61 family peptidase	NA	NA	NA	NA	NA
AZI30886.1|3401177_3401954_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZI30887.1|3403277_3404228_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	3419166	3477239	4126211	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZI30900.1|3419166_3420117_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30901.1|3420245_3421379_-	M20 family peptidase	NA	NA	NA	NA	NA
AZI30902.1|3421422_3422328_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZI30903.1|3422330_3424031_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZI30904.1|3424027_3424948_-	ABC transporter permease	NA	NA	NA	NA	NA
AZI30905.1|3424955_3425933_-	ABC transporter permease	NA	NA	NA	NA	NA
AZI30906.1|3425991_3427026_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZI30907.1|3429000_3429237_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30908.1|3429363_3430227_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZI30909.1|3430315_3431137_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZI30910.1|3431216_3431954_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZI30911.1|3431950_3432943_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZI30912.1|3433056_3433719_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30913.1|3433763_3434912_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZI30914.1|3437235_3438186_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30915.1|3438526_3439477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30916.1|3439575_3440526_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI30917.1|3440822_3441320_+	hypothetical protein	NA	NA	NA	NA	NA
AZI30918.1|3441362_3443138_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZI31628.1|3443184_3444012_+	copper resistance protein B	NA	NA	NA	NA	NA
AZI30919.1|3444018_3444753_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZI30920.1|3445922_3446717_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZI30921.1|3447006_3447597_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZI30922.1|3447630_3448959_-	amidase	NA	NA	NA	NA	NA
AZI30923.1|3449033_3450179_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI30924.1|3450290_3451289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30925.1|3451251_3451686_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZI30926.1|3453202_3454087_+	DMT family transporter	NA	NA	NA	NA	NA
AZI30927.1|3454083_3455289_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZI30928.1|3455285_3456146_-	endonuclease	NA	NA	NA	NA	NA
AZI30929.1|3456258_3458049_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZI30930.1|3458089_3458755_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZI30931.1|3458755_3459064_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZI30932.1|3459229_3460516_-	hypothetical protein	NA	NA	NA	NA	NA
AZI30933.1|3461949_3462900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI30934.1|3464851_3466066_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
AZI30935.1|3466171_3467161_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZI30936.1|3467157_3467766_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZI30937.1|3467778_3468408_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZI30938.1|3468404_3469025_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZI30939.1|3469056_3469848_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZI30940.1|3470690_3471155_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZI30941.1|3471173_3472100_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZI30942.1|3472153_3473440_-	cytochrome c	NA	NA	NA	NA	NA
AZI30943.1|3474370_3475243_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZI30944.1|3475239_3476190_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZI30945.1|3476288_3477239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	3669190	3744583	4126211	transposase	Staphylococcus_phage(15.38%)	57	NA	NA
AZI31120.1|3669190_3670141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31121.1|3670239_3671190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31122.1|3671420_3673112_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZI31123.1|3673160_3673433_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZI31124.1|3673429_3673801_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZI31125.1|3673896_3674031_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZI31634.1|3674436_3675846_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZI31126.1|3675842_3676958_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZI31127.1|3677052_3679506_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZI31128.1|3679624_3680416_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZI31129.1|3680535_3681963_+	amidase	NA	NA	NA	NA	NA
AZI31130.1|3682001_3682973_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI31131.1|3683391_3684555_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZI31132.1|3684642_3685488_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZI31133.1|3687044_3687995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31134.1|3688549_3688924_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZI31135.1|3688998_3690057_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZI31136.1|3690080_3691031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31137.1|3693912_3695082_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZI31138.1|3695182_3696790_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
AZI31139.1|3696836_3698858_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZI31140.1|3698886_3699132_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZI31141.1|3699145_3700336_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZI31142.1|3700531_3701497_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI31143.1|3701519_3702659_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZI31144.1|3702870_3703833_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
AZI31145.1|3703956_3705981_+	TRAP transporter permease	NA	NA	NA	NA	NA
AZI31146.1|3706177_3708421_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AZI31147.1|3708699_3709158_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
AZI31148.1|3710085_3712707_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
AZI31149.1|3712770_3715398_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZI31150.1|3715549_3716614_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI31151.1|3716610_3717384_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZI31152.1|3717392_3718226_+	ABC transporter permease	NA	NA	NA	NA	NA
AZI31153.1|3718238_3719018_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI31635.1|3719052_3720525_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZI31154.1|3720552_3721311_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI31155.1|3721366_3723217_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZI31156.1|3723310_3723787_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZI31157.1|3723803_3724724_-	bestrophin	NA	NA	NA	NA	NA
AZI31158.1|3724830_3725331_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZI31159.1|3725704_3726397_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZI31160.1|3726705_3727656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31161.1|3727652_3731426_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZI31162.1|3731762_3733652_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZI31163.1|3733663_3734557_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZI31164.1|3734582_3735458_+	thiazole synthase	NA	NA	NA	NA	NA
AZI31165.1|3735454_3736306_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZI31166.1|3736367_3737048_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZI31167.1|3737051_3737411_+	hypothetical protein	NA	NA	NA	NA	NA
AZI31168.1|3737411_3738371_+	hypothetical protein	NA	NA	NA	NA	NA
AZI31169.1|3738391_3738880_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZI31636.1|3739161_3740178_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
AZI31170.1|3740369_3741473_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZI31171.1|3741559_3742324_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
AZI31172.1|3742445_3743636_+	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
AZI31173.1|3743632_3744583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP034182	Bordetella pertussis strain BPD1 chromosome, complete genome	4126211	4005971	4076007	4126211	tRNA,transposase	Natrialba_phage(12.5%)	60	NA	NA
AZI31421.1|4005971_4007891_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZI31422.1|4007887_4008580_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
AZI31423.1|4008576_4009374_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZI31424.1|4009380_4010142_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZI31425.1|4010185_4011103_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZI31426.1|4012692_4013883_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZI31427.1|4014121_4014502_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZI31428.1|4014511_4015045_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZI31429.1|4015108_4015540_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZI31430.1|4015542_4016241_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZI31431.1|4016483_4017008_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZI31432.1|4017089_4017473_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZI31433.1|4017632_4021745_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZI31434.1|4021744_4025989_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZI31645.1|4026097_4026502_-	lipoprotein	NA	NA	NA	NA	NA
AZI31435.1|4026742_4027918_+	hypothetical protein	NA	NA	NA	NA	NA
AZI31436.1|4030323_4031430_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
AZI31437.1|4032441_4033257_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZI31438.1|4033253_4034204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31439.1|4034285_4034621_-	CoA transferase	NA	NA	NA	NA	NA
AZI31440.1|4034645_4035080_-	hypothetical protein	NA	NA	NA	NA	NA
AZI31441.1|4035112_4036339_-	thiolase family protein	NA	NA	NA	NA	NA
AZI31442.1|4036335_4036833_-	dehydratase	NA	NA	NA	NA	NA
AZI31646.1|4037040_4037949_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI31443.1|4038134_4038977_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZI31444.1|4039019_4040441_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZI31445.1|4040596_4041547_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZI31446.1|4041543_4042734_-	MFS transporter	NA	NA	NA	NA	NA
AZI31447.1|4042920_4043895_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZI31448.1|4043896_4046035_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZI31449.1|4046031_4046571_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZI31450.1|4046574_4047303_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZI31451.1|4047289_4048183_+	M48 family peptidase	NA	NA	NA	NA	NA
AZI31452.1|4048253_4048649_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZI31453.1|4048658_4049189_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZI31454.1|4049317_4049617_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZI31455.1|4049634_4050585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31456.1|4051084_4051720_+	hypothetical protein	NA	NA	NA	NA	NA
AZI31457.1|4051691_4051928_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZI31458.1|4052055_4052949_+	AEC family transporter	NA	NA	NA	NA	NA
AZI31459.1|4054118_4055366_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZI31460.1|4055362_4055977_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZI31461.1|4056112_4057063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31462.1|4057105_4058362_+	muropeptide transporter	NA	NA	NA	NA	NA
AZI31463.1|4059593_4060328_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZI31464.1|4060333_4060924_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZI31465.1|4060948_4061638_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AZI31466.1|4061634_4062396_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZI31467.1|4062475_4063375_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI31468.1|4063468_4064419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZI31469.1|4065219_4066446_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZI31470.1|4066445_4066865_-	transcriptional regulator	NA	NA	NA	NA	NA
AZI31647.1|4067048_4067990_-	hypothetical protein	NA	NA	NA	NA	NA
AZI31648.1|4068413_4069250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZI31471.1|4069444_4070026_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
AZI31472.1|4070038_4070356_-	ferredoxin	NA	NA	NA	NA	NA
AZI31473.1|4070459_4071518_-	oxidoreductase	NA	NA	NA	NA	NA
AZI31474.1|4071552_4072824_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZI31475.1|4073453_4074635_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZI31476.1|4075056_4076007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
