The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	1908534	315022	323494	1908534		Enterococcus_phage(33.33%)	10	NA	NA
AZI17918.1|315022_317194_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	59.2	1.1e-248
AZI17919.1|317293_317515_-	glutaredoxin-like protein NrdH	NA	X2KRY7	Enterococcus_phage	54.7	3.2e-10
AZI17920.1|317771_318296_+	nucleoside deaminase	NA	A0A2H4PQS8	Staphylococcus_phage	34.4	1.0e-06
AZI17921.1|318551_320243_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.6	2.3e-55
AZI17922.1|320265_320574_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZI17923.1|320589_321189_+	recombination protein RecR	NA	NA	NA	NA	NA
AZI17924.1|321190_321439_+	DUF2508 family protein	NA	NA	NA	NA	NA
AZI17925.1|321458_322103_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	53.1	1.3e-54
AZI17926.1|322115_322436_+	hypothetical protein	NA	NA	NA	NA	NA
AZI17927.1|322453_323494_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	32.3	1.6e-27
>prophage 2
CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	1908534	397600	454347	1908534	protease,transposase,tRNA,integrase	Streptococcus_phage(21.05%)	52	399368:399383	409259:409274
AZI17997.1|397600_398191_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	56.8	3.6e-56
399368:399383	attL	TAGATAGCTCTTTTTT	NA	NA	NA	NA
AZI17998.1|400325_400694_-	hypothetical protein	NA	NA	NA	NA	NA
AZI17999.1|401439_401949_-	hypothetical protein	NA	NA	NA	NA	NA
AZI18000.1|401914_402304_-	hypothetical protein	NA	NA	NA	NA	NA
AZI18001.1|402308_402659_-	hypothetical protein	NA	NA	NA	NA	NA
AZI18002.1|402976_404545_-	DNA primase	NA	B0YL90	Streptococcus_virus	33.4	1.7e-57
AZI18003.1|404599_405424_-	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	26.9	9.6e-07
AZI18004.1|405436_405682_-	hypothetical protein	NA	NA	NA	NA	NA
AZI18005.1|406127_406394_-	DNA-binding protein	NA	NA	NA	NA	NA
AZI18006.1|406405_406591_-	DNA-binding protein	NA	NA	NA	NA	NA
AZI18007.1|406728_407787_+	helix-turn-helix domain-containing protein	NA	Q20DG0	Lactobacillus_phage	37.7	6.3e-11
AZI18008.1|407909_409013_+|integrase	site-specific integrase	integrase	E9LUK6	Lactobacillus_phage	44.6	1.0e-80
AZI18009.1|409348_410374_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.6	1.7e-45
409259:409274	attR	TAGATAGCTCTTTTTT	NA	NA	NA	NA
AZI18010.1|410970_411984_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZI18011.1|412065_413271_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZI18012.1|413376_414144_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZI18013.1|414259_415582_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	70.3	2.0e-171
AZI18014.1|415775_417170_+	amino acid permease	NA	NA	NA	NA	NA
AZI18015.1|417258_418809_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
AZI19277.1|418886_419111_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZI18016.1|419163_421557_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.2	1.1e-87
AZI18017.1|421577_422051_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	56.8	3.1e-42
AZI18018.1|422078_422663_-	hypothetical protein	NA	NA	NA	NA	NA
AZI18019.1|422800_423490_+	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	44.7	5.7e-45
AZI18020.1|423523_424498_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZI18021.1|424506_424959_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZI18022.1|424958_425474_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZI18023.1|425603_426143_-	exonuclease	NA	A0A1S5SFA9	Streptococcus_phage	37.4	4.8e-23
AZI18024.1|426270_427167_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
AZI19278.1|427181_428009_+	TIGR00159 family protein	NA	NA	NA	NA	NA
AZI18025.1|428013_428892_+	hypothetical protein	NA	NA	NA	NA	NA
AZI18026.1|428931_430290_+	phosphoglucosamine mutase	NA	A0A127AWJ1	Bacillus_phage	26.9	3.6e-19
AZI18027.1|430503_432324_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HVL7	Paramecium_bursaria_Chlorella_virus	35.5	3.4e-89
AZI18028.1|432604_432916_+	hypothetical protein	NA	NA	NA	NA	NA
AZI18029.1|432925_434776_+	acetyltransferase	NA	NA	NA	NA	NA
AZI18030.1|434797_435625_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AZI18031.1|435945_436536_+	LysM domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	53.7	1.6e-27
AZI18032.1|436932_437961_-	putative sulfate exporter family transporter	NA	NA	NA	NA	NA
AZI18033.1|438081_438987_+	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	41.2	7.5e-05
AZI18034.1|440131_440971_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	40.1	3.0e-48
AZI18035.1|441133_441649_+	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
AZI18036.1|441882_442824_-	Dyp-type peroxidase	NA	A0A0B5JDC7	Pandoravirus	31.1	3.1e-09
AZI18037.1|443298_444282_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
AZI18038.1|444301_445105_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
AZI18039.1|445133_446054_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
AZI18040.1|446054_446405_+	DUF956 family protein	NA	NA	NA	NA	NA
AZI18041.1|447014_448328_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AZI18042.1|448375_449338_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AZI19279.1|449663_450386_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZI18043.1|450385_451888_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	9.8e-34
AZI18044.1|452090_452951_+	sugar transporter	NA	NA	NA	NA	NA
AZI18045.1|453060_454347_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.2	1.0e-47
>prophage 3
CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	1908534	467956	519209	1908534	head,transposase,tRNA	Lactobacillus_phage(21.43%)	52	NA	NA
AZI18058.1|467956_469315_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AZI18059.1|469442_469895_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	50.8	4.0e-31
AZI18060.1|469973_471224_+|transposase	transposase	transposase	A0A286QQE5	Streptococcus_phage	37.0	2.0e-56
AZI18061.1|472206_473226_+	serine hydrolase	NA	NA	NA	NA	NA
AZI18062.1|473225_474713_+	cardiolipin synthase	NA	NA	NA	NA	NA
AZI18063.1|475019_475325_-	hypothetical protein	NA	NA	NA	NA	NA
AZI18064.1|475336_476068_-	glutamine amidotransferase	NA	NA	NA	NA	NA
AZI18065.1|476067_477405_-	Mur ligase family protein	NA	NA	NA	NA	NA
AZI19281.1|477683_478274_+	thymidine kinase	NA	A0A060AH87	Cronobacter_phage	55.1	4.7e-48
AZI18066.1|478273_479362_+	peptide chain release factor 1	NA	NA	NA	NA	NA
AZI18067.1|479354_480206_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZI18068.1|480224_481256_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	38.0	3.6e-51
AZI18069.1|481379_482615_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.4	1.5e-96
AZI18070.1|482754_483390_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZI18071.1|483584_484703_+	YibE/F family protein	NA	NA	NA	NA	NA
AZI18072.1|484699_485473_+	YibE/F family protein	NA	NA	NA	NA	NA
AZI18073.1|485606_486875_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.7	4.1e-65
AZI18074.1|487201_487912_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
AZI18075.1|487940_488153_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZI18076.1|488198_488705_+	ATP synthase F0 subunit B	NA	NA	NA	NA	NA
AZI18077.1|488697_489243_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
AZI18078.1|489270_490809_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZI18079.1|490840_491776_+	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZI18080.1|491798_493220_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
AZI18081.1|493231_493654_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
AZI18082.1|493889_494111_+	DUF1146 domain-containing protein	NA	NA	NA	NA	NA
AZI18083.1|494120_495344_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZI18084.1|495418_496435_+	rod shape-determining protein	NA	NA	NA	NA	NA
AZI18085.1|496435_496678_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	46.5	3.5e-10
AZI18086.1|496687_496912_+	DUF2969 domain-containing protein	NA	NA	NA	NA	NA
AZI18087.1|496966_498169_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
AZI18088.1|498180_498468_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZI18089.1|498675_499653_+	DUF2785 domain-containing protein	NA	NA	NA	NA	NA
AZI18090.1|499722_500856_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
AZI18091.1|501274_502120_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZI18092.1|502175_502655_-	universal stress protein	NA	NA	NA	NA	NA
AZI18093.1|502733_503138_-	hypothetical protein	NA	NA	NA	NA	NA
AZI18094.1|503299_504592_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	51.1	1.1e-102
AZI18095.1|504588_505062_-	DUF1694 domain-containing protein	NA	NA	NA	NA	NA
AZI18096.1|505151_505562_-	VOC family protein	NA	NA	NA	NA	NA
AZI18097.1|505598_506345_-	fructose permease	NA	NA	NA	NA	NA
AZI18098.1|506580_507426_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	28.1	2.9e-14
AZI18099.1|507868_508189_+|head	head protein	head	Q6SED4	Lactobacillus_prophage	54.2	1.2e-26
AZI18100.1|508232_508424_+	hypothetical protein	NA	NA	NA	NA	NA
AZI18101.1|508686_509292_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
AZI18102.1|509621_511331_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
AZI18103.1|511511_512660_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	7.0e-32
AZI18104.1|512672_513893_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
AZI18105.1|514281_515577_+	GntP family permease	NA	NA	NA	NA	NA
AZI18106.1|515589_516732_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	37.1	3.8e-38
AZI18107.1|518061_518313_+|transposase	transposase	transposase	Q6J1X3	Lactobacillus_phage	92.8	3.9e-36
AZI18108.1|518366_519209_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	96.8	2.9e-152
>prophage 4
CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	1908534	634062	697720	1908534	protease,tRNA,transposase,holin	Planktothrix_phage(10.53%)	55	NA	NA
AZI18211.1|634062_635196_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
AZI18212.1|635495_637091_+	amidohydrolase	NA	NA	NA	NA	NA
AZI18213.1|637198_638131_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
AZI18214.1|638339_638996_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZI18215.1|639010_639700_+	hypothetical protein	NA	NA	NA	NA	NA
AZI18216.1|639700_642247_+	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	29.1	2.4e-32
AZI18217.1|642317_643304_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	31.3	1.1e-33
AZI18218.1|643492_644413_-	prenyltransferase	NA	NA	NA	NA	NA
AZI18219.1|644808_645822_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZI18220.1|646079_647333_-|tRNA	tyrosine--tRNA ligase	tRNA	A0A1L2CUL7	Pectobacterium_phage	42.2	6.0e-85
AZI18221.1|647800_649255_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AZI18222.1|649258_650002_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	9.2e-33
AZI18223.1|650321_651680_+	amino acid permease	NA	NA	NA	NA	NA
AZI18224.1|652681_652771_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AZI18225.1|653237_654587_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	51.0	7.0e-124
AZI18226.1|654627_655402_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	53.2	4.6e-27
AZI18227.1|655463_655892_-	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
AZI18228.1|656115_657090_-	YegS/Rv2252/BmrU family lipid kinase	NA	A0A1V0SBJ0	Catovirus	24.7	9.3e-09
AZI18229.1|657349_657565_-	DUF1447 family protein	NA	NA	NA	NA	NA
AZI18230.1|657691_658138_+	hypothetical protein	NA	NA	NA	NA	NA
AZI18231.1|658248_658818_-	peptide deformylase	NA	A0A2I7S809	Vibrio_phage	40.8	9.8e-11
AZI18232.1|658945_659233_+	UPF0223 family protein	NA	NA	NA	NA	NA
AZI18233.1|659236_660001_+	inositol monophosphatase family protein	NA	NA	NA	NA	NA
AZI18234.1|660078_661926_+	translational GTPase TypA	NA	E4ZFJ7	Streptococcus_phage	33.3	2.1e-22
AZI18235.1|662028_663228_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
AZI18236.1|663214_663511_+	DUF2129 domain-containing protein	NA	NA	NA	NA	NA
AZI18237.1|663513_664074_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
AZI18238.1|664078_664600_+	pantetheine-phosphate adenylyltransferase	NA	NA	NA	NA	NA
AZI18239.1|664583_665633_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZI18240.1|665698_666373_+	competence protein	NA	NA	NA	NA	NA
AZI18241.1|666427_666907_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	56.7	4.1e-34
AZI18242.1|666907_669145_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	31.0	1.6e-27
AZI18243.1|669162_670191_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
AZI18244.1|670429_670684_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZI18245.1|670929_671199_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZI18246.1|672883_674686_+	ribonuclease J	NA	NA	NA	NA	NA
AZI18247.1|674772_675669_+	hypothetical protein	NA	NA	NA	NA	NA
AZI18248.1|675849_677040_+	elongation factor Tu	NA	A0A1V0SGC3	Hokovirus	28.2	3.9e-33
AZI18249.1|677210_678518_+	trigger factor	NA	NA	NA	NA	NA
AZI18250.1|678668_679919_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.1	3.7e-135
AZI18251.1|679932_680526_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
AZI18252.1|680525_680825_+	nucleotide pyrophosphohydrolase	NA	A0A1S7FYY8	Listeria_phage	51.5	6.9e-24
AZI18253.1|681425_682172_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.4e-28
AZI18254.1|682449_684261_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
AZI18255.1|684325_685633_+	GTPase ObgE	NA	NA	NA	NA	NA
AZI18256.1|685659_686592_+	ribonuclease Z	NA	NA	NA	NA	NA
AZI18257.1|686612_687452_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI18258.1|687524_689822_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	4.5e-70
AZI18259.1|689835_690363_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.0	2.3e-30
AZI18260.1|690694_691072_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
AZI18261.1|691149_692148_-	D-2-hydroxyacid dehydrogenase	NA	M1HTA3	Paramecium_bursaria_Chlorella_virus	34.0	1.8e-47
AZI18262.1|692293_693481_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
AZI18263.1|693695_694982_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.7	3.5e-48
AZI18264.1|695208_696300_-	glycerol dehydrogenase	NA	NA	NA	NA	NA
AZI18265.1|696730_697720_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	1908534	703728	776687	1908534	protease,transposase,tRNA	Paenibacillus_phage(13.33%)	53	NA	NA
AZI18272.1|703728_704916_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
AZI18273.1|707062_708451_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZI18274.1|708473_709868_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	32.1	2.9e-56
AZI18275.1|710841_712263_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
AZI18276.1|712384_713332_-	sugar-binding transcriptional regulator	NA	NA	NA	NA	NA
AZI18277.1|713458_714421_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	32.0	1.5e-32
AZI18278.1|715834_716989_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZI18279.1|717006_718050_+	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA	NA
AZI18280.1|718049_718343_+	citrate lyase acyl carrier protein	NA	NA	NA	NA	NA
AZI18281.1|718345_719251_+	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA	NA
AZI18282.1|719240_720779_+	citrate lyase subunit alpha	NA	NA	NA	NA	NA
AZI18283.1|720994_722422_+	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA	NA
AZI18284.1|722402_723191_+	alpha/beta hydrolase	NA	A0A1J0MAD8	Mycobacterium_phage	26.7	1.5e-09
AZI18285.1|725006_726023_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.2	4.3e-33
AZI18286.1|726151_726445_+	hypothetical protein	NA	NA	NA	NA	NA
AZI18287.1|726428_728699_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	30.7	2.8e-125
AZI18288.1|730041_730308_+	hypothetical protein	NA	NA	NA	NA	NA
AZI18289.1|734439_734754_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
AZI18290.1|735244_736498_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
AZI18291.1|738875_740045_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
AZI18292.1|740394_741021_-	LexA repressor	NA	A0A1B2APZ1	Phage_Wrath	52.9	6.6e-16
AZI18293.1|741177_741429_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
AZI18294.1|741505_741733_+	YneF family protein	NA	NA	NA	NA	NA
AZI18295.1|741795_742431_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZI18296.1|742526_743279_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
AZI18297.1|743271_743562_+	GIY-YIG nuclease family protein	NA	W8W2G4	Invertebrate_iridovirus	38.0	1.4e-05
AZI18298.1|743715_744495_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZI18299.1|744585_745464_+	elongation factor Ts	NA	NA	NA	NA	NA
AZI18300.1|745544_746270_+	UMP kinase	NA	NA	NA	NA	NA
AZI18301.1|746266_746830_+	ribosome recycling factor	NA	NA	NA	NA	NA
AZI18302.1|746956_747730_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	35.3	6.6e-18
AZI18303.1|747746_748535_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZI18304.1|748556_749828_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZI18305.1|749861_751583_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	26.5	6.2e-08
AZI18306.1|751722_756066_+	PolC-type DNA polymerase III	NA	A0A0A7RWA3	Clostridium_phage	30.8	1.9e-16
AZI18307.1|756188_757340_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.3e-21
AZI18308.1|757352_758099_-	acetylglutamate kinase	NA	NA	NA	NA	NA
AZI18309.1|758108_759311_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
AZI18310.1|759337_760363_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AZI18311.1|760608_761679_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	33.0	6.3e-51
AZI18312.1|761671_764761_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZI18313.1|764913_765393_+	ribosome maturation factor	NA	NA	NA	NA	NA
AZI18314.1|765412_766639_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AZI18315.1|766675_766978_+	YlxR family protein	NA	NA	NA	NA	NA
AZI18316.1|766970_767294_+	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
AZI18317.1|767298_769614_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.6	4.3e-20
AZI18318.1|769626_769989_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AZI18319.1|770058_770955_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AZI18320.1|770965_771931_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
AZI18321.1|772045_773434_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
AZI18322.1|773628_774816_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
AZI19283.1|774916_775342_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	29.2	1.1e-09
AZI18323.1|775490_776687_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	45.5	7.0e-91
>prophage 6
CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	1908534	898928	907196	1908534	tRNA	Staphylococcus_phage(28.57%)	8	NA	NA
AZI18427.1|898928_900131_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	48.6	3.4e-45
AZI18428.1|900143_902030_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.0	1.3e-51
AZI18429.1|902095_903055_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	63.4	2.0e-117
AZI18430.1|903066_903570_+	dihydrofolate reductase	NA	A0A1Y0SUI9	Pseudomonas_phage	34.8	3.5e-20
AZI18431.1|903549_904179_-	hemolysin III family protein	NA	NA	NA	NA	NA
AZI18432.1|904345_905188_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	34.1	8.0e-17
AZI18433.1|905321_906500_-	3-phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	36.5	2.5e-61
AZI18434.1|906569_907196_+	chloramphenicol acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	40.8	4.0e-13
>prophage 7
CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	1908534	1566344	1616318	1908534	protease,transposase	Lactobacillus_phage(25.0%)	46	NA	NA
AZI18995.1|1566344_1568849_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.8	2.8e-126
AZI18996.1|1568867_1569338_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
AZI18997.1|1570951_1571971_-	alcohol dehydrogenase AdhP	NA	E3SJ82	Synechococcus_phage	27.1	3.3e-17
AZI18998.1|1572257_1572974_+	hypothetical protein	NA	NA	NA	NA	NA
AZI18999.1|1573035_1573701_-	hypothetical protein	NA	NA	NA	NA	NA
AZI19306.1|1573733_1573991_-	hypothetical protein	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	43.5	1.9e-06
AZI19000.1|1575167_1576100_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.4	2.0e-40
AZI19001.1|1577233_1577737_-	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
AZI19002.1|1577755_1578235_-	cobalt ABC transporter permease	NA	NA	NA	NA	NA
AZI19003.1|1578582_1579413_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AZI19307.1|1579471_1579816_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI19004.1|1579731_1580052_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZI19005.1|1580064_1580235_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZI19006.1|1580974_1581616_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	52.5	5.4e-58
AZI19007.1|1581746_1583237_-	amino acid permease	NA	NA	NA	NA	NA
AZI19008.1|1583546_1584014_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZI19009.1|1584058_1584868_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZI19010.1|1585086_1585755_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZI19011.1|1585809_1586298_-	threonine/serine exporter	NA	NA	NA	NA	NA
AZI19012.1|1586307_1587057_-	threonine/serine exporter	NA	NA	NA	NA	NA
AZI19013.1|1587228_1587429_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	65.2	1.2e-19
AZI19014.1|1587577_1588237_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZI19015.1|1588389_1589295_+	cation transporter	NA	NA	NA	NA	NA
AZI19016.1|1589449_1590145_-	VIT family protein	NA	NA	NA	NA	NA
AZI19017.1|1590162_1590846_-	VIT family protein	NA	NA	NA	NA	NA
AZI19018.1|1590995_1591472_-	universal stress protein	NA	NA	NA	NA	NA
AZI19019.1|1591677_1592112_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZI19020.1|1592160_1593375_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZI19021.1|1593545_1595378_-	ribonuclease J	NA	NA	NA	NA	NA
AZI19022.1|1595649_1595991_-	hypothetical protein	NA	NA	NA	NA	NA
AZI19023.1|1596085_1596613_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZI19024.1|1596670_1598155_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
AZI19025.1|1598158_1598863_+	DUF4811 domain-containing protein	NA	NA	NA	NA	NA
AZI19026.1|1599931_1600816_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	31.7	4.0e-11
AZI19027.1|1601089_1603678_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA	NA
AZI19028.1|1603953_1604538_-	DJ-1 family protein	NA	NA	NA	NA	NA
AZI19029.1|1604553_1605552_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZI19030.1|1606027_1607191_-|transposase	transposase	transposase	Q5ULQ4	Lactobacillus_virus	71.1	1.2e-159
AZI19031.1|1607187_1607625_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	70.3	1.0e-47
AZI19308.1|1607759_1608422_-	uracil-DNA glycosylase	NA	NA	NA	NA	NA
AZI19032.1|1608439_1609777_-	threonine/serine exporter family protein	NA	NA	NA	NA	NA
AZI19033.1|1609851_1610745_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZI19034.1|1612330_1612942_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	51.4	1.7e-48
AZI19035.1|1612961_1614308_+	NADPH-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	55.4	1.7e-53
AZI19036.1|1614534_1615833_-	oxaloacetate-decarboxylating malate dehydrogenase	NA	NA	NA	NA	NA
AZI19037.1|1615865_1616318_-|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	51.5	2.8e-32
>prophage 8
CP034193	Lactobacillus fermentum strain YL-11 chromosome, complete genome	1908534	1764018	1808178	1908534	transposase	Streptococcus_phage(27.27%)	40	NA	NA
AZI19315.1|1764018_1764909_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	38.1	4.6e-39
AZI19147.1|1764866_1765400_-|transposase	transposase	transposase	NA	NA	NA	NA
AZI19148.1|1765469_1766327_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZI19149.1|1766725_1767379_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZI19150.1|1767602_1769732_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	49.8	1.2e-170
AZI19151.1|1770123_1770603_+	hypothetical protein	NA	NA	NA	NA	NA
AZI19152.1|1770703_1771351_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AZI19153.1|1771328_1771877_-	DNA-binding protein	NA	NA	NA	NA	NA
AZI19154.1|1771876_1772107_-	copper-binding protein	NA	NA	NA	NA	NA
AZI19155.1|1772168_1774022_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.1	6.3e-83
AZI19156.1|1774215_1775208_-	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	41.1	1.0e-18
AZI19157.1|1775380_1776340_+	nucleoside hydrolase	NA	NA	NA	NA	NA
AZI19158.1|1776876_1777446_+	ABC transporter permease	NA	NA	NA	NA	NA
AZI19159.1|1777449_1778832_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	30.1	6.1e-14
AZI19160.1|1778821_1779475_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
AZI19161.1|1779519_1779879_+	hypothetical protein	NA	NA	NA	NA	NA
AZI19162.1|1779969_1781898_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AZI19163.1|1782261_1783275_-	lipoate--protein ligase	NA	NA	NA	NA	NA
AZI19164.1|1783286_1783709_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
AZI19165.1|1784067_1785030_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZI19166.1|1785159_1785585_+	XRE family transcriptional regulator	NA	A0A0H4ITV7	Staphylococcus_phage	42.9	1.9e-06
AZI19167.1|1786885_1787362_-	hypothetical protein	NA	NA	NA	NA	NA
AZI19168.1|1787368_1787767_-	hypothetical protein	NA	NA	NA	NA	NA
AZI19169.1|1787865_1788336_+	universal stress protein	NA	NA	NA	NA	NA
AZI19170.1|1788362_1788713_+	ANTAR domain-containing protein	NA	NA	NA	NA	NA
AZI19316.1|1788892_1789711_+	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA	NA
AZI19171.1|1789806_1791168_-	MFS transporter	NA	NA	NA	NA	NA
AZI19172.1|1791378_1793382_-	transketolase	NA	NA	NA	NA	NA
AZI19173.1|1793394_1794141_-	transaldolase	NA	E3SKN5	Synechococcus_phage	30.2	2.8e-13
AZI19174.1|1794532_1795213_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
AZI19175.1|1796616_1797315_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	30.8	3.4e-21
AZI19176.1|1797251_1798160_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	26.9	8.9e-14
AZI19177.1|1798459_1799470_-	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA	NA
AZI19178.1|1799498_1800326_-	ATP-dependent sacrificial sulfur transferase LarE	NA	NA	NA	NA	NA
AZI19179.1|1800350_1801061_-	aquaporin family protein	NA	NA	NA	NA	NA
AZI19180.1|1801062_1802427_-	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA	NA
AZI19181.1|1802589_1803810_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.5	2.1e-95
AZI19182.1|1804531_1805815_-	nickel-dependent lactate racemase	NA	NA	NA	NA	NA
AZI19183.1|1806055_1806727_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AZI19184.1|1807152_1808178_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.0	6.5e-45
