assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003931815.1_ASM393181v1	CP034250	Salmonella enterica subsp. enterica serovar Derby strain Sa64 chromosome, complete genome	1	759178-759999	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,cas3,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,13,13	13	TypeI-E	PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,cas3,DinG,RT	NA|362aa|up_9|CP034250.1_746698_747784_-,NA|57aa|down_2|CP034250.1_761274_761445_+	NA|362aa|up_9|CP034250.1_746698_747784_-	NA	NA|179aa|up_8|CP034250.1_747812_748349_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_7|CP034250.1_748345_748816_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_6|CP034250.1_748830_749337_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_5|CP034250.1_749356_750130_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_4|CP034250.1_750142_752842_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_3|CP034250.1_752921_753509_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_2|CP034250.1_754115_754916_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_1|CP034250.1_755143_756781_+	PRK05380, pyrG, CTP synthetase; Validated	NA|224aa|up_0|CP034250.1_758209_758881_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP034250.1_760096_760894_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP034250.1_760983_761346_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP034250.1_761274_761445_+	NA	NA|600aa|down_3|CP034250.1_761769_763569_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP034250.1_763568_765281_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP034250.1_765356_766091_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP034250.1_766303_767257_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|517aa|down_7|CP034250.1_770784_772335_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|181aa|down_8|CP034250.1_772331_772874_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|CP034250.1_772887_773946_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCA_003931815.1_ASM393181v1	CP034250	Salmonella enterica subsp. enterica serovar Derby strain Sa64 chromosome, complete genome	2	776642-778378	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,cas3,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	27,28,28	28	TypeI-E	PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,cas3,DinG,RT	NA,NA	NA|571aa|up_9|CP034250.1_763568_765281_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|CP034250.1_765356_766091_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|CP034250.1_766303_767257_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|517aa|up_6|CP034250.1_770784_772335_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|181aa|up_5|CP034250.1_772331_772874_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP034250.1_772887_773946_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP034250.1_773956_774703_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP034250.1_774684_775335_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP034250.1_775331_776252_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP034250.1_776251_776545_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP034250.1_778392_779439_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP034250.1_779689_780598_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP034250.1_780607_782047_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|119aa|down_3|CP034250.1_782658_783015_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_4|CP034250.1_783207_783519_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_5|CP034250.1_783537_784248_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_6|CP034250.1_784247_784727_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|CP034250.1_784723_785773_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|CP034250.1_785753_786515_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|CP034250.1_786508_787135_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCA_003931815.1_ASM393181v1	CP034250	Salmonella enterica subsp. enterica serovar Derby strain Sa64 chromosome, complete genome	3	4637719-4637813	3	CRISPRCasFinder	no		PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,cas3,DinG,RT	Orphan	ACCGGGTCTACTGGCTCAGGGTCTAC	26	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,cas3,DinG,RT	NA|31aa|up_4|CP034250.1_4632788_4632881_+,NA|160aa|up_3|CP034250.1_4633082_4633562_+,NA|38aa|up_2|CP034250.1_4635090_4635204_+,NA|155aa|up_0|CP034250.1_4636124_4636589_+,NA	NA|250aa|up_9|CP034250.1_4623043_4623793_+	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|286aa|up_8|CP034250.1_4623792_4624650_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|370aa|up_7|CP034250.1_4624653_4625763_+	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme	NA|248aa|up_6|CP034250.1_4625749_4626493_+	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917	NA|909aa|up_5|CP034250.1_4630040_4632767_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_4|CP034250.1_4632788_4632881_+	NA	NA|160aa|up_3|CP034250.1_4633082_4633562_+	NA	NA|38aa|up_2|CP034250.1_4635090_4635204_+	NA	NA|286aa|up_1|CP034250.1_4635256_4636114_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|CP034250.1_4636124_4636589_+	NA	NA|206aa|down_0|CP034250.1_4639387_4640005_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|210aa|down_1|CP034250.1_4642407_4643037_+	PRK15239, PRK15239, putative fimbrial protein StaA; Provisional	NA|248aa|down_2|CP034250.1_4643180_4643924_+	PRK09926, PRK09926, fimbrial chaperone	NA|867aa|down_3|CP034250.1_4643944_4646545_+	PRK09828, PRK09828, putative fimbrial outer membrane usher protein; Provisional	NA|195aa|down_4|CP034250.1_4646558_4647143_+	PRK15241, PRK15241, putative fimbrial protein StaD; Provisional	NA|203aa|down_5|CP034250.1_4647157_4647766_+	PRK15263, PRK15263, fimbrial-like protein	NA|198aa|down_6|CP034250.1_4647781_4648375_+	PRK15262, PRK15262, putative fimbrial protein StaF; Provisional	NA|410aa|down_7|CP034250.1_4648398_4649628_+	PRK09723, PRK09723, fimbrial-like adhesin	NA|773aa|down_8|CP034250.1_4652597_4654916_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_9|CP034250.1_4655018_4656728_-	pfam05170, AsmA, AsmA family
