assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003952385.1_ASM395238v1	CP034444	Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 chromosome, complete genome	1	492822-492923	1	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DEDDh	Type I-A	GGCGGCATGGACTTCTAAGAAGTCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh	NA|70aa|up_8|CP034444.1_482872_483082_+,NA|284aa|up_2|CP034444.1_488876_489728_-,NA|323aa|down_4|CP034444.1_496074_497043_+	NA|318aa|up_9|CP034444.1_481856_482810_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|70aa|up_8|CP034444.1_482872_483082_+	NA	NA|312aa|up_7|CP034444.1_483078_484014_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|378aa|up_6|CP034444.1_484300_485434_-	cd06814, PLPDE_III_DSD_D-TA_like_3, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3	NA|434aa|up_5|CP034444.1_485430_486732_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|412aa|up_4|CP034444.1_486746_487982_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|209aa|up_3|CP034444.1_488054_488681_+	pfam17928, TetR_C_22, Tetracyclin repressor-like, C-terminal domain	NA|284aa|up_2|CP034444.1_488876_489728_-	NA	NA|267aa|up_1|CP034444.1_489800_490601_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|99aa|up_0|CP034444.1_490827_491124_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|172aa|down_0|CP034444.1_493152_493668_-	pfam02566, OsmC, OsmC-like protein	NA|142aa|down_1|CP034444.1_493725_494151_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|408aa|down_2|CP034444.1_494139_495363_+	pfam12852, Cupin_6, Cupin	NA|204aa|down_3|CP034444.1_495364_495976_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|323aa|down_4|CP034444.1_496074_497043_+	NA	NA|129aa|down_5|CP034444.1_497214_497601_-	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|260aa|down_6|CP034444.1_497806_498586_-	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins	csa3|107aa|down_7|CP034444.1_498585_498906_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|252aa|down_8|CP034444.1_498993_499749_-	cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR	NA|220aa|down_9|CP034444.1_499864_500524_-	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases
GCA_003952385.1_ASM395238v1	CP034444	Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 chromosome, complete genome	2	1951916-1952070	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh	Orphan	TGTTTTGACGCAATTCCGGACGGAAAACCGTTTCACACTTTTCTTGGAATTGCT	54	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh	NA|224aa|up_3|CP034444.1_1946785_1947457_-,NA|275aa|down_9|CP034444.1_1965378_1966203_+	NA|621aa|up_9|CP034444.1_1935955_1937818_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|631aa|up_8|CP034444.1_1937817_1939710_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|742aa|up_7|CP034444.1_1940508_1942734_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|405aa|up_6|CP034444.1_1943139_1944354_+	COG4671, COG4671, Predicted glycosyl transferase [General function prediction only]	NA|415aa|up_5|CP034444.1_1944355_1945600_+	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|384aa|up_4|CP034444.1_1945596_1946748_+	COG4671, COG4671, Predicted glycosyl transferase [General function prediction only]	NA|224aa|up_3|CP034444.1_1946785_1947457_-	NA	NA|905aa|up_2|CP034444.1_1947622_1950337_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|150aa|up_1|CP034444.1_1950525_1950975_+	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	NA|285aa|up_0|CP034444.1_1951050_1951905_+	cd07715, TaR3-like_MBL-fold, MBL-fold metallo-hydrolase domain of Myxococcus xanthus TaR3 and related proteins; MBL-fold metallo-hydrolase domain	NA|363aa|down_0|CP034444.1_1952821_1953910_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|393aa|down_1|CP034444.1_1953985_1955164_+	pfam11294, DUF3095, Protein of unknown function (DUF3095)	NA|447aa|down_2|CP034444.1_1955563_1956904_+	COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]	NA|632aa|down_3|CP034444.1_1957051_1958947_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|633aa|down_4|CP034444.1_1958943_1960842_+	cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|333aa|down_5|CP034444.1_1960844_1961843_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|394aa|down_6|CP034444.1_1961839_1963021_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|160aa|down_7|CP034444.1_1963267_1963747_+	pfam12692, Methyltransf_17, S-adenosyl-L-methionine methyltransferase	NA|472aa|down_8|CP034444.1_1963763_1965179_-	cd07302, CHD, cyclase homology domain	NA|275aa|down_9|CP034444.1_1965378_1966203_+	NA
GCA_003952385.1_ASM395238v1	CP034444	Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 chromosome, complete genome	3	3503644-3503747	3	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DEDDh	Type I-A	GGGCGTCTTGCGCAATTCCGGGCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh	NA,NA	NA|340aa|up_9|CP034444.1_3492846_3493866_+	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]	NA|324aa|up_8|CP034444.1_3494476_3495448_+	cd19970, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein	NA|501aa|up_7|CP034444.1_3495582_3497085_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|339aa|up_6|CP034444.1_3497081_3498098_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|334aa|up_5|CP034444.1_3498179_3499181_+	cd06275, PBP1_PurR, ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli	NA|135aa|up_4|CP034444.1_3499183_3499588_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|341aa|up_3|CP034444.1_3499681_3500704_+	cd08252, AL_MDR, Arginate lyase and other MDR family members	NA|353aa|up_2|CP034444.1_3500758_3501817_-	PRK07589, PRK07589, ornithine cyclodeaminase; Validated	NA|311aa|up_1|CP034444.1_3501819_3502752_-	cd09989, Arginase, Arginase family	NA|147aa|up_0|CP034444.1_3502900_3503341_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|167aa|down_0|CP034444.1_3503867_3504368_+	COG3760, COG3760, Uncharacterized conserved protein [Function unknown]	NA|332aa|down_1|CP034444.1_3504467_3505463_+	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|224aa|down_2|CP034444.1_3505627_3506299_+	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]	NA|82aa|down_3|CP034444.1_3506326_3506572_+	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|1107aa|down_4|CP034444.1_3506737_3510058_-	PRK05672, dnaE2, error-prone DNA polymerase; Validated	NA|493aa|down_5|CP034444.1_3510054_3511533_-	cd03468, PolY_like, DNA Polymerase Y-family	NA|364aa|down_6|CP034444.1_3511474_3512566_-	COG4544, COG4544, Uncharacterized conserved protein [Function unknown]	NA|146aa|down_7|CP034444.1_3512748_3513186_+	COG3824, COG3824, Predicted Zn-dependent protease [General function prediction only]	NA|69aa|down_8|CP034444.1_3513439_3513646_-	COG5515, COG5515, Uncharacterized conserved small protein [Function unknown]	NA|293aa|down_9|CP034444.1_3513675_3514554_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]
GCA_003952385.1_ASM395238v1	CP034444	Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 chromosome, complete genome	4	4209289-4209434	4	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh	Orphan	GGCATCAAGGATGGCGCCGAATTCGTCATCCCGACGATGAACTGACCGGA	50	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh	NA,NA|101aa|down_0|CP034444.1_4209687_4209990_+,NA|106aa|down_1|CP034444.1_4210234_4210552_+	NA|284aa|up_9|CP034444.1_4196819_4197671_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|126aa|up_8|CP034444.1_4197913_4198291_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|161aa|up_7|CP034444.1_4198352_4198835_+	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional	NA|445aa|up_6|CP034444.1_4198984_4200319_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|443aa|up_5|CP034444.1_4200323_4201652_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|400aa|up_4|CP034444.1_4201828_4203028_+	COG2861, COG2861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|173aa|up_3|CP034444.1_4203060_4203579_+	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed	NA|382aa|up_2|CP034444.1_4203651_4204797_+	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane]	NA|420aa|up_1|CP034444.1_4204890_4206150_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|294aa|up_0|CP034444.1_4206757_4207639_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|101aa|down_0|CP034444.1_4209687_4209990_+	NA	NA|106aa|down_1|CP034444.1_4210234_4210552_+	NA	NA|220aa|down_2|CP034444.1_4210603_4211263_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|312aa|down_3|CP034444.1_4211376_4212312_+	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|428aa|down_4|CP034444.1_4212353_4213637_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|334aa|down_5|CP034444.1_4213736_4214738_+	PRK13971, PRK13971, 4-hydroxyproline epimerase	NA|296aa|down_6|CP034444.1_4214756_4215644_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|129aa|down_7|CP034444.1_4215809_4216196_+	PRK13290, ectC, L-ectoine synthase; Reviewed	NA|301aa|down_8|CP034444.1_4216616_4217519_+	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH	NA|465aa|down_9|CP034444.1_4217524_4218919_+	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional
