assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003952465.1_ASM395246v1	CP034448	Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 chromosome, complete genome	1	470207-470314	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL	Orphan	TAAGCGGCGATGCTGCGCATCGCGCT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL	NA|129aa|up_5|CP034448.1_465074_465461_-,NA	NA|598aa|up_9|CP034448.1_459904_461698_+	COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|343aa|up_8|CP034448.1_461710_462739_+	cd08234, threonine_DH_like, L-threonine dehydrogenase	NA|370aa|up_7|CP034448.1_462919_464029_-	COG4663, FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|258aa|up_6|CP034448.1_464274_465048_+	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|129aa|up_5|CP034448.1_465074_465461_-	NA	NA|328aa|up_4|CP034448.1_465598_466582_-	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase	NA|341aa|up_3|CP034448.1_466578_467601_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|314aa|up_2|CP034448.1_467663_468605_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|136aa|up_1|CP034448.1_468799_469207_-	COG4954, COG4954, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|up_0|CP034448.1_469245_470130_+	pfam02311, AraC_binding, AraC-like ligand binding domain	NA|158aa|down_0|CP034448.1_470320_470794_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|347aa|down_1|CP034448.1_471175_472216_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|325aa|down_2|CP034448.1_472385_473360_+	COG2319, COG2319, FOG: WD40 repeat [General function prediction only]	NA|459aa|down_3|CP034448.1_473480_474857_+	PRK07046, PRK07046, aminotransferase; Validated	NA|469aa|down_4|CP034448.1_474868_476275_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|223aa|down_5|CP034448.1_476334_477003_+	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain	NA|422aa|down_6|CP034448.1_477296_478562_-	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism]	NA|169aa|down_7|CP034448.1_478734_479241_-	PRK02487, PRK02487, heme-degrading domain-containing protein	NA|438aa|down_8|CP034448.1_479316_480630_-	PRK09228, PRK09228, guanine deaminase; Provisional	NA|409aa|down_9|CP034448.1_480632_481859_-	COG3748, COG3748, Predicted membrane protein [Function unknown]
GCA_003952465.1_ASM395246v1	CP034448	Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 chromosome, complete genome	2	1244261-1244352	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL	Orphan	GCCTTCGCCGACCGAAGCGCTCAT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL	NA|133aa|up_3|CP034448.1_1239537_1239936_-,NA|133aa|down_5|CP034448.1_1249492_1249891_+	NA|652aa|up_9|CP034448.1_1232084_1234040_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|91aa|up_8|CP034448.1_1234345_1234618_+	COG5425, COG5425, Usg protein, probable subunit of phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]	NA|345aa|up_7|CP034448.1_1234908_1235943_-	cd19091, AKR_PsAKR, Polaromonas Sp	NA|394aa|up_6|CP034448.1_1235983_1237165_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|302aa|up_5|CP034448.1_1237288_1238194_+	cd08480, PBP2_CrgA_like_10, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|350aa|up_4|CP034448.1_1238249_1239299_-	cd19091, AKR_PsAKR, Polaromonas Sp	NA|133aa|up_3|CP034448.1_1239537_1239936_-	NA	NA|222aa|up_2|CP034448.1_1240056_1240722_-	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|876aa|up_1|CP034448.1_1241011_1243639_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|193aa|up_0|CP034448.1_1243625_1244204_+	COG5468, COG5468, Predicted secreted (periplasmic) protein [Function unknown]	NA|143aa|down_0|CP034448.1_1244773_1245202_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|140aa|down_1|CP034448.1_1245137_1245557_+	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase	NA|219aa|down_2|CP034448.1_1245718_1246375_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|728aa|down_3|CP034448.1_1246466_1248650_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|232aa|down_4|CP034448.1_1248677_1249373_+	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|133aa|down_5|CP034448.1_1249492_1249891_+	NA	NA|187aa|down_6|CP034448.1_1250242_1250803_+	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated	NA|510aa|down_7|CP034448.1_1250802_1252332_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|294aa|down_8|CP034448.1_1252367_1253249_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|527aa|down_9|CP034448.1_1253326_1254907_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated
GCA_003952465.1_ASM395246v1	CP034448	Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 chromosome, complete genome	3	1945869-1945969	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL	Orphan	GCTGGCGCCGTCCGCTGCCTTGGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL	NA|51aa|up_3|CP034448.1_1939820_1939973_-,NA|122aa|down_1|CP034448.1_1948356_1948722_-	NA|389aa|up_9|CP034448.1_1933788_1934955_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|368aa|up_8|CP034448.1_1934957_1936061_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|84aa|up_7|CP034448.1_1936073_1936325_-	COG0425, SirA, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|432aa|up_6|CP034448.1_1936326_1937622_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|317aa|up_5|CP034448.1_1937832_1938783_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|305aa|up_4|CP034448.1_1938882_1939797_-	PRK00283, xerD, tyrosine recombinase	NA|51aa|up_3|CP034448.1_1939820_1939973_-	NA	NA|204aa|up_2|CP034448.1_1940169_1940781_+	PRK13946, PRK13946, shikimate kinase; Provisional	NA|377aa|up_1|CP034448.1_1940777_1941908_+	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|297aa|up_0|CP034448.1_1941918_1942809_+	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|650aa|down_0|CP034448.1_1946187_1948137_-	PRK15455, PRK15455, PrkA family serine protein kinase; Provisional	NA|122aa|down_1|CP034448.1_1948356_1948722_-	NA	NA|270aa|down_2|CP034448.1_1949012_1949822_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|355aa|down_3|CP034448.1_1950049_1951114_+	cd01831, Endoglucanase_E_like, Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans	NA|355aa|down_4|CP034448.1_1951110_1952175_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|101aa|down_5|CP034448.1_1952190_1952493_-	pfam01722, BolA, BolA-like protein	NA|208aa|down_6|CP034448.1_1952629_1953253_+	cd06257, DnaJ, DnaJ domain or J-domain	NA|329aa|down_7|CP034448.1_1953376_1954363_+	TIGR01650, PD_CobS, cobaltochelatase, CobS subunit	NA|633aa|down_8|CP034448.1_1954415_1956314_+	TIGR01651, CobT, cobaltochelatase, CobT subunit	NA|341aa|down_9|CP034448.1_1956310_1957333_+	COG4246, COG4246, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003952465.1_ASM395246v1	CP034448	Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 chromosome, complete genome	4	5633707-5633795	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL	Orphan	AGGCGCGAGACGGCTTGCCGTCTCGTCGCTGC	32	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL	NA|108aa|up_9|CP034448.1_5627715_5628039_-,NA|65aa|up_8|CP034448.1_5628038_5628233_-,NA|80aa|up_7|CP034448.1_5628217_5628457_-,NA|68aa|up_6|CP034448.1_5628562_5628766_-,NA|68aa|up_4|CP034448.1_5629400_5629604_-,NA|140aa|up_1|CP034448.1_5631583_5632003_-,NA|90aa|down_0|CP034448.1_5633903_5634173_+,NA|119aa|down_1|CP034448.1_5634322_5634679_+,NA|246aa|down_2|CP034448.1_5634700_5635438_+,NA|102aa|down_3|CP034448.1_5635502_5635808_+	NA|108aa|up_9|CP034448.1_5627715_5628039_-	NA	NA|65aa|up_8|CP034448.1_5628038_5628233_-	NA	NA|80aa|up_7|CP034448.1_5628217_5628457_-	NA	NA|68aa|up_6|CP034448.1_5628562_5628766_-	NA	NA|221aa|up_5|CP034448.1_5628762_5629425_-	COG3926, zliS, Lysozyme family protein [General function prediction only]	NA|68aa|up_4|CP034448.1_5629400_5629604_-	NA	NA|334aa|up_3|CP034448.1_5629590_5630592_-	COG3781, COG3781, Predicted membrane protein [Function unknown]	NA|249aa|up_2|CP034448.1_5630949_5631696_-	COG5565, COG5565, Bacteriophage terminase large (ATPase) subunit and inactivated derivatives [General function prediction only]	NA|140aa|up_1|CP034448.1_5631583_5632003_-	NA	NA|168aa|up_0|CP034448.1_5631995_5632499_-	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional	NA|90aa|down_0|CP034448.1_5633903_5634173_+	NA	NA|119aa|down_1|CP034448.1_5634322_5634679_+	NA	NA|246aa|down_2|CP034448.1_5634700_5635438_+	NA	NA|102aa|down_3|CP034448.1_5635502_5635808_+	NA	NA|141aa|down_4|CP034448.1_5635894_5636317_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|252aa|down_5|CP034448.1_5636550_5637306_-	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase	NA|157aa|down_6|CP034448.1_5637447_5637918_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|120aa|down_7|CP034448.1_5639641_5640001_-	pfam03779, SPW, SPW repeat	NA|351aa|down_8|CP034448.1_5640154_5641207_-	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|82aa|down_9|CP034448.1_5641268_5641514_-	PRK02967, PRK02967, nickel-responsive transcriptional regulator NikR
GCA_003952465.1_ASM395246v1	CP034448	Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 chromosome, complete genome	5	6667247-6667329	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL	Orphan	GCACTTTTCCTGGAATTGCTCTGGCG	26	1	7	6667273-6667303|6667273-6667303|6667273-6667303|6667273-6667303|6667273-6667303|6667273-6667303|6667273-6667303	CP034448.1_1191746-1191716|CP034448.1_2070742-2070772|CP034448.1_6553657-6553687|CP034448.1_82858-82888|CP034448.1_1807528-1807558|CP034448.1_3390174-3390204|CP034448.1_4116143-4116173	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL	NA,NA	NA|291aa|up_9|CP034448.1_6657346_6658219_-	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA	NA|515aa|up_8|CP034448.1_6658310_6659855_+	TIGR02310, HpaB-2, 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component	NA|170aa|up_7|CP034448.1_6659867_6660377_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|146aa|up_6|CP034448.1_6660424_6660862_-	TIGR02337, Homoprotocatechuate_degradative_operon_repressor	NA|129aa|up_5|CP034448.1_6661050_6661437_+	pfam02962, CHMI, 5-carboxymethyl-2-hydroxymuconate isomerase	NA|506aa|up_4|CP034448.1_6661473_6662991_+	TIGR02299, NAD-dependent_succinate_aldehyde_dehydrogenases, 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase	NA|327aa|up_3|CP034448.1_6663004_6663985_+	TIGR02295, Substrate_Complex_Of_Homoprotocatechuate, 3,4-dihydroxyphenylacetate 2,3-dioxygenase	NA|292aa|up_2|CP034448.1_6664229_6665105_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|267aa|up_1|CP034448.1_6665104_6665905_+	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA|340aa|up_0|CP034448.1_6666166_6667186_-	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	NA|219aa|down_0|CP034448.1_6667472_6668129_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|364aa|down_1|CP034448.1_6668109_6669201_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|284aa|down_2|CP034448.1_6669282_6670134_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|266aa|down_3|CP034448.1_6670340_6671138_-	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase	NA|455aa|down_4|CP034448.1_6671134_6672499_-	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|262aa|down_5|CP034448.1_6672501_6673287_-	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|230aa|down_6|CP034448.1_6673545_6674235_-	cd05373, SDR_c10, classical (c) SDR, subgroup  10	NA|372aa|down_7|CP034448.1_6674450_6675566_+	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed	NA|143aa|down_8|CP034448.1_6675566_6675995_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|395aa|down_9|CP034448.1_6676055_6677240_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
