assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003952825.1_ASM395282v1	CP025199	Bifidobacterium pseudocatenulatum strain 12 chromosome, complete genome	2	57434-57560	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CCGCCATTTTCCGTAGGAAAATTCAAGCGGCGCGACGC	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|61aa|down_0|CP025199.1_57613_57796_-	NA|535aa|up_9|CP025199.1_45749_47354_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|172aa|up_8|CP025199.1_47359_47875_-	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|236aa|up_7|CP025199.1_47902_48610_-	pfam12401, DUF3662, Protein of unknown function (DUF2662)	NA|801aa|up_6|CP025199.1_48818_51221_+	pfam00326, Peptidase_S9, Prolyl oligopeptidase family	NA|426aa|up_5|CP025199.1_51511_52789_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|219aa|up_4|CP025199.1_52778_53435_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|357aa|up_3|CP025199.1_53747_54818_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|328aa|up_2|CP025199.1_54914_55898_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|210aa|up_1|CP025199.1_56069_56699_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|110aa|up_0|CP025199.1_56868_57198_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|61aa|down_0|CP025199.1_57613_57796_-	NA	NA|435aa|down_1|CP025199.1_57884_59189_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|660aa|down_2|CP025199.1_59526_61506_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|727aa|down_3|CP025199.1_62236_64417_+	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|337aa|down_4|CP025199.1_64658_65669_-	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase	NA|483aa|down_5|CP025199.1_65950_67399_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|363aa|down_6|CP025199.1_67797_68886_+	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|319aa|down_7|CP025199.1_69965_70922_+	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG	NA|775aa|down_8|CP025199.1_71204_73529_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|904aa|down_9|CP025199.1_73531_76243_-	COG1511, COG1511, Predicted membrane protein [Function unknown]
GCA_003952825.1_ASM395282v1	CP025199	Bifidobacterium pseudocatenulatum strain 12 chromosome, complete genome	3	69810-69934	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GTCCGATTCTGGTGAATCGGACG	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|61aa|up_6|CP025199.1_57613_57796_-,NA|64aa|down_8|CP025199.1_82456_82648_+	NA|328aa|up_9|CP025199.1_54914_55898_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|210aa|up_8|CP025199.1_56069_56699_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|110aa|up_7|CP025199.1_56868_57198_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|61aa|up_6|CP025199.1_57613_57796_-	NA	NA|435aa|up_5|CP025199.1_57884_59189_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|660aa|up_4|CP025199.1_59526_61506_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|727aa|up_3|CP025199.1_62236_64417_+	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|337aa|up_2|CP025199.1_64658_65669_-	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase	NA|483aa|up_1|CP025199.1_65950_67399_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|363aa|up_0|CP025199.1_67797_68886_+	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|319aa|down_0|CP025199.1_69965_70922_+	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG	NA|775aa|down_1|CP025199.1_71204_73529_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|904aa|down_2|CP025199.1_73531_76243_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|356aa|down_3|CP025199.1_76551_77619_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|down_4|CP025199.1_77828_79115_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|down_5|CP025199.1_79138_80722_+	cd01031, EriC, ClC chloride channel EriC	NA|355aa|down_6|CP025199.1_80908_81973_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|132aa|down_7|CP025199.1_81972_82368_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|64aa|down_8|CP025199.1_82456_82648_+	NA	NA|362aa|down_9|CP025199.1_82949_84035_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs
GCA_003952825.1_ASM395282v1	CP025199	Bifidobacterium pseudocatenulatum strain 12 chromosome, complete genome	6	114866-114939	6	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TGTCCGATTCTGGAGAATCGGAC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|250aa|up_2|CP025199.1_108916_109666_-,NA|154aa|down_1|CP025199.1_116764_117226_+,NA|169aa|down_5|CP025199.1_123068_123575_+	NA|458aa|up_9|CP025199.1_98119_99493_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|350aa|up_8|CP025199.1_99624_100674_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|298aa|up_7|CP025199.1_100673_101567_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|911aa|up_6|CP025199.1_101682_104415_+	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|348aa|up_5|CP025199.1_104643_105687_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|204aa|up_4|CP025199.1_105735_106347_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|734aa|up_3|CP025199.1_106518_108720_+	pfam02065, Melibiase, Melibiase	NA|250aa|up_2|CP025199.1_108916_109666_-	NA	NA|490aa|up_1|CP025199.1_109939_111409_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1060aa|up_0|CP025199.1_111672_114852_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|499aa|down_0|CP025199.1_114972_116469_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|154aa|down_1|CP025199.1_116764_117226_+	NA	NA|367aa|down_2|CP025199.1_117300_118401_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|811aa|down_3|CP025199.1_118646_121079_+	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|502aa|down_4|CP025199.1_121228_122734_+	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|169aa|down_5|CP025199.1_123068_123575_+	NA	NA|516aa|down_6|CP025199.1_124131_125679_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|299aa|down_7|CP025199.1_125805_126702_-	PRK00208, thiG, thiazole synthase; Reviewed	NA|238aa|down_8|CP025199.1_126790_127504_-	PRK08644, PRK08644, sulfur carrier protein ThiS adenylyltransferase ThiF	NA|65aa|down_9|CP025199.1_127630_127825_-	TIGR01683, thiamine_biosynthesis_protein_ThiS, thiamine biosynthesis protein ThiS
GCA_003952825.1_ASM395282v1	CP025199	Bifidobacterium pseudocatenulatum strain 12 chromosome, complete genome	7	1595965-1601996	2,7,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U,Type I-C, Type I-U?	ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC,ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC,ATTTCAATCCACGCTCTCCATGAGGAGAGCGAC	33,33,33	0	0	NA	NA	NA:NA:NA	89,89,89	89	TypeI-U,TypeI-C,TypeI-U?	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|309aa|up_9|CP025199.1_1583684_1584611_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|222aa|up_8|CP025199.1_1584703_1585369_+	cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria	NA|300aa|up_7|CP025199.1_1585485_1586385_-	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|259aa|up_6|CP025199.1_1586483_1587260_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|550aa|up_5|CP025199.1_1587651_1589301_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|313aa|up_4|CP025199.1_1589431_1590370_-	pfam01112, Asparaginase_2, Asparaginase	NA|283aa|up_3|CP025199.1_1590526_1591375_+	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|339aa|up_2|CP025199.1_1591388_1592405_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|409aa|up_1|CP025199.1_1592605_1593832_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|223aa|up_0|CP025199.1_1593968_1594637_+	COG0400, COG0400, Predicted esterase [General function prediction only]	cas2|97aa|down_0|CP025199.1_1602381_1602672_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|CP025199.1_1602739_1603771_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|226aa|down_2|CP025199.1_1603770_1604448_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|282aa|down_3|CP025199.1_1604481_1605327_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|626aa|down_4|CP025199.1_1605386_1607264_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|236aa|down_5|CP025199.1_1607267_1607975_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|806aa|down_6|CP025199.1_1608217_1610635_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|1105aa|down_7|CP025199.1_1611167_1614482_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|483aa|down_8|CP025199.1_1614883_1616332_-	TIGR00792, Melibiose_carrier_protein, sugar (Glycoside-Pentoside-Hexuronide) transporter	NA|337aa|down_9|CP025199.1_1616650_1617661_-	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism
GCA_003952825.1_ASM395282v1	CP025199	Bifidobacterium pseudocatenulatum strain 12 chromosome, complete genome	9	1979245-1979377	9	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GTCCGAAACCTCCACCCACTGGAGGAA	27	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|122aa|up_8|CP025199.1_1966666_1967032_-,NA|306aa|up_7|CP025199.1_1967908_1968826_-,NA|61aa|up_5|CP025199.1_1970300_1970483_+,NA|254aa|up_2|CP025199.1_1972784_1973546_+,NA|98aa|up_1|CP025199.1_1973643_1973937_-,NA|821aa|down_0|CP025199.1_1986906_1989369_-	NA|567aa|up_9|CP025199.1_1964834_1966535_+	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase	NA|122aa|up_8|CP025199.1_1966666_1967032_-	NA	NA|306aa|up_7|CP025199.1_1967908_1968826_-	NA	NA|264aa|up_6|CP025199.1_1969055_1969847_-	pfam13391, HNH_2, HNH endonuclease	NA|61aa|up_5|CP025199.1_1970300_1970483_+	NA	NA|306aa|up_4|CP025199.1_1970578_1971496_-	pfam16280, DUF4928, Domain of unknown function (DUF4928)	NA|393aa|up_3|CP025199.1_1971508_1972687_-	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase	NA|254aa|up_2|CP025199.1_1972784_1973546_+	NA	NA|98aa|up_1|CP025199.1_1973643_1973937_-	NA	NA|65aa|up_0|CP025199.1_1976426_1976621_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|821aa|down_0|CP025199.1_1986906_1989369_-	NA	NA|442aa|down_1|CP025199.1_1989590_1990916_+	pfam02687, FtsX, FtsX-like permease family	NA|395aa|down_2|CP025199.1_1990912_1992097_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|264aa|down_3|CP025199.1_1992215_1993007_-	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein	NA|295aa|down_4|CP025199.1_1993131_1994016_-	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|726aa|down_5|CP025199.1_1994217_1996395_-	pfam02705, K_trans, K+ potassium transporter	NA|319aa|down_6|CP025199.1_1996627_1997584_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|787aa|down_7|CP025199.1_1997705_2000066_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|460aa|down_8|CP025199.1_2000159_2001539_-	cd14792, GH27, glycosyl hydrolase family 27 (GH27)	NA|411aa|down_9|CP025199.1_2001824_2003057_+	COG1609, PurR, Transcriptional regulators [Transcription]
