The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	42922	57730	2876110		Streptococcus_phage(90.91%)	15	NA	NA
AZQ16250.1|42922_44716_+	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	6.9e-26
AZQ16251.1|44915_45230_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
AZQ16252.1|45250_45628_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
AZQ16253.1|45637_46411_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16254.1|46432_47836_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.5	2.2e-176
AZQ16255.1|48017_49202_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	68.1	6.3e-161
AZQ16256.1|49198_49489_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16257.1|49485_49707_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
AZQ16258.1|49748_50528_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16259.1|50588_51089_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.0	1.7e-54
AZQ16260.1|51144_51783_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16261.1|51854_52250_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
AZQ16262.1|52233_54687_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.9	0.0e+00
AZQ16263.1|54683_56711_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	65.3	5.1e-195
AZQ16264.1|56707_57730_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	2.4e-132
>prophage 2
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	62357	69685	2876110	integrase	Streptococcus_phage(57.14%)	9	58724:58737	73063:73076
58724:58737	attL	TTGATAAAAAATTG	NA	NA	NA	NA
AZQ16268.1|62357_62855_-	trimethoprim-resistant dihydrofolate reductase DfrG	NA	G3MBI7	Bacillus_virus	49.1	4.0e-40
AZQ16269.1|64375_64543_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	62.0	2.3e-13
AZQ16270.1|64600_64954_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
AZQ16271.1|65185_65296_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16272.1|65424_65907_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	8.5e-48
AZQ16273.1|65903_66134_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
AZQ16274.1|66631_66832_+	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
AZQ16275.1|66858_68052_+|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
AZQ16276.1|68119_69685_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	30.6	3.5e-18
73063:73076	attR	CAATTTTTTATCAA	NA	NA	NA	NA
>prophage 3
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	249830	310065	2876110	transposase,tRNA	Streptococcus_phage(72.73%)	55	NA	NA
AZQ16458.1|249830_251018_-|transposase	IS256 family transposase IS16	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
AZQ18849.1|251114_252011_+	citrate transporter	NA	NA	NA	NA	NA
AZQ16459.1|252058_254188_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZQ16460.1|254162_254852_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16461.1|254842_255031_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16462.1|255259_255946_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ16463.1|256325_256766_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZQ16464.1|256769_257615_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZQ16465.1|257763_259182_+	dipeptidase PepV	NA	NA	NA	NA	NA
AZQ16466.1|259279_260575_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AZQ16467.1|260779_261982_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16468.1|261968_263756_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16469.1|263768_264722_-	glycosyltransferase	NA	NA	NA	NA	NA
AZQ16470.1|264906_265257_-	peptidase	NA	NA	NA	NA	NA
AZQ16471.1|265456_266536_+	glutamyl aminopeptidase	NA	NA	NA	NA	NA
AZQ16472.1|266678_266999_+	thioredoxin	NA	NA	NA	NA	NA
AZQ16473.1|267020_267485_+	universal stress protein	NA	NA	NA	NA	NA
AZQ16474.1|267680_268286_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
AZQ16475.1|268324_269614_-	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.2	5.7e-22
AZQ16476.1|270041_270521_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
AZQ16477.1|270731_270851_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16478.1|270873_271188_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
AZQ16479.1|271203_271590_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
AZQ16480.1|271618_273004_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AZQ16481.1|273182_274388_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AZQ16482.1|275171_277082_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
AZQ16483.1|277185_277410_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	97.1	8.5e-27
AZQ16484.1|277526_278024_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	97.6	1.3e-88
AZQ16485.1|278110_278503_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	99.2	4.6e-68
AZQ16486.1|278486_280934_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	98.4	0.0e+00
AZQ16487.1|280936_283120_+	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	82.3	2.9e-305
AZQ16488.1|283116_284118_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	95.5	1.3e-183
AZQ16489.1|284114_285047_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	91.6	5.1e-158
AZQ16490.1|285321_285408_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
AZQ16491.1|285423_287343_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	96.6	0.0e+00
AZQ16492.1|287440_288814_+	tetracycline efflux MFS transporter Tet(L)	NA	NA	NA	NA	NA
AZQ16493.1|288862_289063_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16494.1|289377_290640_+	Plasmid recombination enzyme type 2	NA	NA	NA	NA	NA
AZQ16495.1|290884_291772_+	protein rep	NA	NA	NA	NA	NA
AZQ16496.1|291794_292481_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AZQ16497.1|293226_293961_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T)	NA	E4ZFQ0	Streptococcus_phage	52.5	2.2e-63
AZQ18850.1|294008_294068_-	23S rRNA methylase leader peptide ErmCL	NA	NA	NA	NA	NA
AZQ16498.1|294169_294856_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AZQ16499.1|295002_295338_-	PRD domain-containing protein	NA	NA	NA	NA	NA
AZQ16500.1|295623_297504_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	33.9	1.9e-98
AZQ16501.1|297582_297810_+	copper resistance protein CopZ	NA	NA	NA	NA	NA
AZQ16502.1|297814_298357_+	DNA-binding protein	NA	NA	NA	NA	NA
AZQ16503.1|298622_299285_+	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
AZQ16504.1|299605_300847_+	serine/threonine transporter SstT	NA	NA	NA	NA	NA
AZQ16505.1|300993_301629_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
AZQ16506.1|301819_302563_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZQ16507.1|302796_303630_+	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZQ16508.1|304992_305691_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ16509.1|306376_307502_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.1	5.0e-75
AZQ16510.1|308769_310065_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
>prophage 4
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	319698	380700	2876110	transposase	Acanthocystis_turfacea_Chlorella_virus(20.0%)	54	NA	NA
AZQ16522.1|319698_321037_+|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
AZQ16523.1|321457_322417_-|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
AZQ16524.1|322643_324479_+	tyrosine decarboxylase	NA	NA	NA	NA	NA
AZQ16525.1|324783_326262_+	amino acid permease	NA	NA	NA	NA	NA
AZQ16526.1|326227_327559_+	amino acid permease	NA	NA	NA	NA	NA
AZQ16527.1|327672_328983_+	ATPase	NA	M1HLC0	Paramecium_bursaria_Chlorella_virus	28.2	8.6e-26
AZQ16528.1|329121_330294_+	HAD family hydrolase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	47.0	7.9e-31
AZQ18852.1|330439_331168_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16529.1|331180_331363_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16530.1|331656_333750_+	PRD domain-containing protein	NA	NA	NA	NA	NA
AZQ16531.1|333774_334077_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
AZQ16532.1|334103_335393_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AZQ16533.1|335411_335819_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZQ16534.1|335841_336711_+	ketose-bisphosphate aldolase	NA	NA	NA	NA	NA
AZQ16535.1|336712_337333_+	kinase	NA	NA	NA	NA	NA
AZQ16536.1|337782_338388_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AZQ16537.1|338522_338975_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ16538.1|339525_340236_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16539.1|340431_340800_+	glyoxalase	NA	NA	NA	NA	NA
AZQ16540.1|340819_341044_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16541.1|341288_342602_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	32.1	2.6e-46
AZQ16542.1|343051_344674_+	alpha-glucosidase	NA	NA	NA	NA	NA
AZQ16543.1|344867_346364_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	22.2	4.4e-26
AZQ16544.1|346413_348189_+	HTH domain-containing protein	NA	NA	NA	NA	NA
AZQ16545.1|348246_350142_+	PTS beta-glucoside transporter subunit EIIBCA	NA	NA	NA	NA	NA
AZQ16546.1|350138_351596_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
AZQ16547.1|351499_351763_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16548.1|352179_352614_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZQ16549.1|352714_353806_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
AZQ16550.1|353835_354513_+	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA	NA
AZQ16551.1|354844_356140_+	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA	NA
AZQ16552.1|356129_357590_+	transcriptional regulator	NA	NA	NA	NA	NA
AZQ16553.1|357725_359222_+	glycerol kinase	NA	NA	NA	NA	NA
AZQ16554.1|359235_361059_+	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA	NA
AZQ16555.1|361059_361776_+	aquaporin family protein	NA	M1HVL5	Acanthocystis_turfacea_Chlorella_virus	36.9	1.6e-29
AZQ16556.1|362081_364010_+	endonuclease MutS2	NA	F2Y0V3	Organic_Lake_phycodnavirus	27.3	7.2e-21
AZQ16557.1|364135_364690_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA	NA
AZQ16558.1|364633_364861_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16559.1|365174_365489_-	sulfur reduction protein DsrE	NA	NA	NA	NA	NA
AZQ16560.1|365502_365763_-	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
AZQ16561.1|365932_366247_+	rhodanese-like domain-containing protein	NA	E4WM79	Ostreococcus_tauri_virus	39.1	3.4e-05
AZQ16562.1|366248_367904_+	CoA-disulfide reductase	NA	NA	NA	NA	NA
AZQ16563.1|367986_370122_+	ATP-dependent DNA helicase IV	NA	NA	NA	NA	NA
AZQ16564.1|370296_370662_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16565.1|370727_371681_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AZQ16566.1|371869_373174_+	glycosyltransferase	NA	NA	NA	NA	NA
AZQ16567.1|373269_374139_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AZQ16568.1|374250_374571_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16569.1|374740_375700_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AZQ16570.1|375789_376185_+	PTS-dependent dihydroxyacetone kinase phosphotransferase subunit DhaM	NA	NA	NA	NA	NA
AZQ16571.1|376186_377170_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA	NA
AZQ16572.1|377197_377803_+	dihydroxyacetone kinase subunit L	NA	NA	NA	NA	NA
AZQ16573.1|377897_379193_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
AZQ16574.1|379404_380700_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
>prophage 5
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	598524	655427	2876110	integrase,transposase	Streptococcus_phage(47.37%)	52	645584:645600	653538:653554
AZQ16767.1|598524_599988_-|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.0	2.0e-124
AZQ16768.1|600515_600782_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16769.1|601300_601966_-	helix-turn-helix domain-containing protein	NA	A0A2I7SCV6	Paenibacillus_phage	47.8	1.1e-05
AZQ18861.1|602091_604128_+	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
AZQ16770.1|604131_604770_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.8	5.9e-12
AZQ16771.1|604797_605226_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16772.1|605682_606594_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZQ16773.1|606810_607248_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16774.1|607342_608227_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
AZQ16775.1|608450_611618_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16776.1|611637_612183_+	DUF916 domain-containing protein	NA	NA	NA	NA	NA
AZQ16777.1|612210_612666_+	DUF3324 domain-containing protein	NA	NA	NA	NA	NA
AZQ16778.1|612662_613421_+	WxL domain-containing protein	NA	NA	NA	NA	NA
AZQ16779.1|613506_613734_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16780.1|613921_615121_+	helix-turn-helix domain-containing protein	NA	Q9AYU4	Lactococcus_phage	38.1	5.7e-08
AZQ16781.1|615142_615355_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16782.1|615429_615906_+	PcfB family protein	NA	NA	NA	NA	NA
AZQ16783.1|615902_617711_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
AZQ16784.1|617787_618003_+	conjugative transfer protein	NA	NA	NA	NA	NA
AZQ16785.1|618094_618958_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16786.1|618988_619531_+	DNA methyltransferase	NA	A0A0M3LPV8	Mannheimia_phage	64.5	2.5e-64
AZQ18862.1|619544_619967_+	PrgI family protein	NA	E4ZFJ8	Streptococcus_phage	35.2	7.8e-13
AZQ16787.1|619896_622296_+	PrgI family protein	NA	NA	NA	NA	NA
AZQ16788.1|622327_624319_+	NlpC/P60 family protein	NA	A0A1S5SEZ8	Streptococcus_phage	45.5	6.9e-27
AZQ16789.1|624341_624593_+	DUF4315 family protein	NA	NA	NA	NA	NA
AZQ16790.1|624582_625812_+	DUF4366 domain-containing protein	NA	NA	NA	NA	NA
AZQ16791.1|625808_627890_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	30.6	7.2e-43
AZQ16792.1|628038_631959_+	DUF4316 domain-containing protein	NA	A0A2K9V3V9	Faecalibacterium_phage	38.9	3.9e-50
AZQ16793.1|631959_632904_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16794.1|632907_633111_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16795.1|633410_633647_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZQ16796.1|633829_634201_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16797.1|634197_635526_-	endonuclease	NA	NA	NA	NA	NA
AZQ16798.1|635486_635816_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
AZQ16799.1|636073_636445_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	31.1	2.8e-06
AZQ16800.1|636589_636775_+	DNA-binding protein	NA	NA	NA	NA	NA
AZQ16801.1|637286_637505_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16802.1|637717_638377_+	VanB-type vancomycin resistance DNA-binding response regulator VanR	NA	W8CYM9	Bacillus_phage	41.2	2.2e-38
AZQ16803.1|638379_639723_+	VanB-type vancomycin resistance histidine kinase VanS	NA	NA	NA	NA	NA
AZQ16804.1|639893_640700_+	VanY-B/VanY-G family D-Ala-D-Ala carboxypeptidase	NA	A0A1B0T6D4	Thiobacimonas_phage	32.7	1.4e-05
AZQ16805.1|641660_642911_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
AZQ16806.1|643319_644291_+	D-lactate dehydrogenase VanH-B	NA	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	35.0	6.8e-44
AZQ16807.1|644283_645312_+	D-alanine--(R)-lactate ligase VanB	NA	NA	NA	NA	NA
AZQ16808.1|645317_645926_+	D-Ala-D-Ala dipeptidase VanX-B	NA	NA	NA	NA	NA
645584:645600	attL	TCTCACAAAAGAAAAAT	NA	NA	NA	NA
AZQ16809.1|646283_647623_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
AZQ16810.1|647931_648363_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AZQ16811.1|648369_648603_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZQ16812.1|648524_648767_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18863.1|649023_649227_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	2.5e-25
AZQ16813.1|649310_650504_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.8	6.4e-153
AZQ16814.1|652332_653625_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
653538:653554	attR	ATTTTTCTTTTGTGAGA	NA	NA	NA	NA
AZQ16815.1|654131_655427_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
>prophage 6
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	749755	808598	2876110	integrase,protease,transposase	Streptococcus_phage(23.53%)	59	745339:745398	807630:808691
745339:745398	attL	TCTTAATTGTCAAATTAAGTTAGACAGATCATCAATACTTACGTAACTCAAAAATACTTC	NA	NA	NA	NA
AZQ16903.1|749755_750958_+|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	28.5	1.1e-32
AZQ16904.1|751606_752737_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	45.3	6.0e-84
AZQ16905.1|752850_753804_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AZQ16906.1|754112_754505_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ16907.1|754532_755873_+	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	25.6	9.1e-07
AZQ16908.1|756598_756844_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16909.1|757065_758676_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	48.4	2.3e-145
AZQ16910.1|758652_758865_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ16911.1|758967_759837_+	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
AZQ16912.1|760001_761273_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZQ16913.1|761269_762565_+	transcription termination factor Rho	NA	NA	NA	NA	NA
AZQ16914.1|762663_762927_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
AZQ16915.1|763371_763821_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZQ16916.1|763877_765296_+	PTS fructose transporter subunit IIBC	NA	NA	NA	NA	NA
AZQ16917.1|765295_766156_+	ketose-bisphosphate aldolase	NA	NA	NA	NA	NA
AZQ16918.1|766329_767103_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
AZQ16919.1|767249_767615_+	DUF2512 family protein	NA	NA	NA	NA	NA
AZQ16920.1|767762_768971_-	MFS transporter	NA	NA	NA	NA	NA
AZQ16921.1|768989_769268_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18867.1|769460_770117_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AZQ16922.1|770558_771356_-	TPM domain-containing protein	NA	NA	NA	NA	NA
AZQ16923.1|771352_772537_-	TFIIB-type zinc ribbon-containing protein	NA	NA	NA	NA	NA
AZQ16924.1|772561_773809_-	virion core protein	NA	NA	NA	NA	NA
AZQ16925.1|774023_775769_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	36.3	1.9e-49
AZQ16926.1|775788_776103_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZQ16927.1|776127_776724_+	recombination protein RecR	NA	NA	NA	NA	NA
AZQ16928.1|776787_777432_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
AZQ16929.1|777446_777776_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16930.1|777789_778728_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
AZQ16931.1|778763_779588_+	signal peptidase	NA	NA	NA	NA	NA
AZQ16932.1|779580_779928_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
AZQ16933.1|779996_780869_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
AZQ16934.1|780977_782099_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZQ16935.1|782152_782755_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
AZQ16936.1|783069_785259_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
AZQ16937.1|785584_786352_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.2	8.0e-32
AZQ16938.1|786341_788384_+	ABC transporter permease	NA	NA	NA	NA	NA
AZQ18868.1|788409_788595_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ16939.1|788664_788814_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
AZQ16940.1|788824_790339_+	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.5	3.4e-42
AZQ16941.1|790335_791541_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	30.7	1.4e-19
AZQ16942.1|791585_791819_+	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA	NA
AZQ16943.1|791821_793090_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
AZQ16944.1|793230_794313_+	M42 family peptidase	NA	NA	NA	NA	NA
AZQ16945.1|794312_795116_+	DUF975 family protein	NA	NA	NA	NA	NA
AZQ16946.1|795185_795926_+	MBL fold metallo-hydrolase	NA	S4VYV9	Pandoravirus	26.3	3.9e-07
AZQ16947.1|795936_796941_+	lipoate--protein ligase	NA	NA	NA	NA	NA
AZQ16948.1|796985_798830_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18869.1|799041_799560_+	signal peptidase I	NA	NA	NA	NA	NA
AZQ16949.1|799687_800371_+	O-methyltransferase	NA	NA	NA	NA	NA
AZQ16950.1|800911_801271_+	DUF1304 family protein	NA	NA	NA	NA	NA
AZQ16951.1|801306_802215_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
AZQ16952.1|802442_804074_+	SulP family inorganic anion transporter	NA	NA	NA	NA	NA
AZQ16953.1|804200_805496_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
AZQ16954.1|805657_806299_-	uracil-DNA glycosylase	NA	NA	NA	NA	NA
AZQ16955.1|806580_806889_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZQ16956.1|806915_807260_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
AZQ16957.1|807272_807566_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZQ16958.1|807638_808598_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
807630:808691	attR	TCTTAATTGTCAAATTAAGTTAGACAGATCATCAATACTTACGTAACTCAAAAATACTTCCAAAGGTGTTCGATAATCCAGTGATTTTCTAGGAATATTATTTCGTTTAGATGCGACAGATTGAATAAAAAATTCATCTACTGAATTGAAATCCATAGATTTCAATAAACCATCTCTACGTAACAATCCGTTAGAATTCTCGTTTAGGCCTCTTTGAGACGGCGTTCCTGGATCAGCGAAATAAATGGCAATATCATTGACATTACTGATCTGTTTCCAATTTGAAAATTCCTTTCCACAATCAAAAGTGATGGATTTGAATAGGTTTTTCGGTACAGATTCAAACCATTGATTTAATTTTTTTTCAATATCAATCGCTTGTCTACCACACGGTTTCAATGTGATGATAACTTTTGATAATCGTTCAACTAAGGTAATTACAGCACTTTTATGTTTCAGACCTACGATAGTGTCACCTTCAAGGTGACCAAACTCATTTGAGAATTGGCTATAATCCTTTTCACGTTCATGAATAGAGCGGCGGAAAGTTTGTTTTCCACGTCTTTCTTGATGTCCATTCGGTTTACGCTTGCCTTTCATCGGTAAGTCAGAAGAATCAAATAGCCCCTTTTTGAACATACGATAAATGGTACGAGCAGAACAACTAATAGGAAACGCTGCACGACCAACAATCACATCGGGTGTCCATCCTTGAACAACCTTTCTTTGAATATATTCTGATTGTTCCTCGGGTAAAACAAGCGGACGTCTACCACAGTTTGATTTGTTTTTCTTATACTGTTGATAATATTCTAAGGCTGATTTTCCTTGCTTGAAGAACAGATATACTTTATGGATCGTTTGTCTTGAACGATTCAAGCAATGGGCAGTTTTAGCAACAGATTGATTCATTTTGAAATAAGACTCTATTATTACAAGTTCATCCGTTGTAAGATGGGTATAGGTCATTTGTACTCACTCCTTATAATTCTTTGGTCGGAACTATTTTGAGTGTAGCACAAATGACTTTTTTAGTTGTCTAGCTTAATTTTACAATCGGCG	NA	NA	NA	NA
>prophage 7
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	844949	946342	2876110	integrase,portal,capsid,tail,protease,transposase,tRNA,terminase,holin,head	Enterococcus_phage(22.45%)	105	854623:854638	865846:865861
AZQ16995.1|844949_847748_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	2.1e-74
AZQ16996.1|847796_849323_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	35.3	8.9e-75
AZQ16997.1|849337_849985_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZQ18871.1|850168_850498_-	DUF4828 domain-containing protein	NA	NA	NA	NA	NA
AZQ16998.1|850674_851403_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
AZQ16999.1|851418_852432_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZQ17000.1|852431_853709_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	28.8	5.8e-35
AZQ17001.1|853771_856474_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
854623:854638	attL	TATCGATATCGAAAAA	NA	NA	NA	NA
AZQ17002.1|856625_856943_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
AZQ17003.1|856972_857293_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
AZQ17004.1|857400_858861_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AZQ17005.1|858928_859150_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17006.1|859180_859363_+	DUF3188 domain-containing protein	NA	NA	NA	NA	NA
AZQ17007.1|859362_859776_+	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
AZQ17008.1|859898_861080_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZQ17009.1|861610_862750_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	46.8	2.6e-95
AZQ17010.1|862865_863501_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	52.6	5.1e-32
AZQ17011.1|863583_864006_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
AZQ17012.1|864023_864344_-	XRE family transcriptional regulator	NA	A0A1B0Y3N1	Lactobacillus_phage	35.1	6.5e-12
AZQ17013.1|864644_865421_+	phage antirepressor	NA	A0A1Q1PVU2	Staphylococcus_phage	53.8	1.1e-73
AZQ17014.1|865435_865639_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17015.1|865654_865993_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
865846:865861	attR	TATCGATATCGAAAAA	NA	NA	NA	NA
AZQ17016.1|866247_866913_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17017.1|866967_867666_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	1.3e-25
AZQ17018.1|867843_868185_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17019.1|868177_868849_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.8	5.5e-29
AZQ17020.1|868854_869541_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.5	1.1e-88
AZQ17021.1|869547_870399_+	replication protein	NA	A0A1S5SFJ6	Streptococcus_phage	66.4	2.7e-49
AZQ17022.1|870410_870680_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17023.1|870841_871162_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17024.1|871158_871548_+	hypothetical protein	NA	A0A2H4JBP1	uncultured_Caudovirales_phage	36.4	1.7e-09
AZQ17025.1|871544_872138_+	DUF1642 domain-containing protein	NA	A0A0C5KKV2	Enterococcus_phage	39.5	6.2e-24
AZQ17026.1|872134_872512_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17027.1|872508_872712_+	toxin PIN	NA	NA	NA	NA	NA
AZQ17028.1|872708_872918_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17029.1|872914_873208_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18872.1|873237_873678_+	transcriptional regulator	NA	D2IYV6	Enterococcus_phage	38.4	5.3e-20
AZQ17030.1|873752_874220_+	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	29.1	8.4e-08
AZQ17031.1|874629_874983_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17032.1|875913_876258_+	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	58.1	1.0e-26
AZQ17033.1|876262_876544_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17034.1|876646_876961_+|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
AZQ17035.1|876938_878633_+|terminase	terminase large subunit	terminase	A0A1B1P766	Bacillus_phage	49.5	2.3e-148
AZQ17036.1|878652_879831_+|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.7	3.2e-80
AZQ17037.1|879793_880480_+|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	40.2	1.0e-30
AZQ17038.1|880479_881640_+|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.1	1.8e-99
AZQ17039.1|881649_882525_+	hypothetical protein	NA	D2IYX3	Enterococcus_phage	74.2	5.6e-130
AZQ17040.1|882521_882833_+	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	42.1	6.3e-12
AZQ17041.1|882822_883176_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AZQ17042.1|883165_883567_+	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	33.3	1.1e-13
AZQ17043.1|883559_883964_+	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
AZQ17044.1|883975_884584_+|tail	phage tail protein	tail	Q8W5Z9	Listeria_phage	41.1	3.0e-34
AZQ17045.1|884603_884966_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17046.1|884968_885151_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17047.1|885167_888587_+|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	41.5	8.7e-78
AZQ17048.1|888637_889375_+|tail	phage tail protein	tail	NA	NA	NA	NA
AZQ17049.1|889384_891676_+	hypothetical protein	NA	A0A1D3SNL1	Enterococcus_phage	29.9	1.2e-88
AZQ17050.1|891699_893943_+	hypothetical protein	NA	A0A249XZH9	Enterococcus_phage	34.2	1.6e-59
AZQ17051.1|894020_894263_+|holin	holin	holin	D2J075	Enterococcus_phage	67.1	1.6e-23
AZQ17052.1|894278_894476_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	82.8	1.1e-22
AZQ17053.1|894486_895506_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.4e-60
AZQ17054.1|895574_896913_+|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
AZQ17055.1|897452_898064_+	GNAT family N-acetyltransferase	NA	C8CH40	Staphylococcus_phage	33.7	1.9e-28
AZQ17056.1|899001_899304_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17057.1|899552_899753_-	hypothetical protein	NA	Q9AZR0	Lactococcus_phage	75.7	4.6e-08
AZQ17058.1|900154_901450_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AZQ17059.1|901579_902812_-	aminopeptidase	NA	NA	NA	NA	NA
AZQ17060.1|903065_903635_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17061.1|903812_904253_-	flavodoxin	NA	NA	NA	NA	NA
AZQ17062.1|904410_905175_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZQ17063.1|905206_906130_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
AZQ17064.1|906205_907345_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
AZQ17065.1|907337_908138_+	glycosyltransferase	NA	NA	NA	NA	NA
AZQ17066.1|908137_908965_+	glycosyltransferase	NA	NA	NA	NA	NA
AZQ17067.1|908942_909677_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZQ17068.1|909776_910643_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	62.5	3.7e-102
AZQ17069.1|910656_911229_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.2	8.3e-42
AZQ17070.1|911250_912279_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.2	2.2e-69
AZQ17071.1|912376_913228_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.0	1.3e-38
AZQ17072.1|913262_915296_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17073.1|915339_916620_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17074.1|916829_917636_+	ABC transporter permease	NA	NA	NA	NA	NA
AZQ17075.1|917647_918868_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	3.3e-11
AZQ17076.1|918857_920444_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZQ17077.1|920482_922621_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZQ17078.1|922688_923648_-|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
AZQ17079.1|923982_925374_+	sugar transferase	NA	NA	NA	NA	NA
AZQ17080.1|925411_926242_+	glycosyltransferase	NA	NA	NA	NA	NA
AZQ17081.1|926213_927203_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	33.6	5.9e-11
AZQ17082.1|927316_928312_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZQ17083.1|928315_929458_+	teichoic acid biosynthesis protein F	NA	NA	NA	NA	NA
AZQ17084.1|929454_930882_+	flippase	NA	NA	NA	NA	NA
AZQ17085.1|930948_931056_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17086.1|931284_932580_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AZQ17087.1|933044_933785_-	AAA family ATPase	NA	A0A059NT77	Lactococcus_phage	49.4	1.1e-59
AZQ17088.1|933774_935013_-|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	52.2	1.8e-110
AZQ17089.1|936102_936513_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	4.1e-19
AZQ17090.1|936638_938030_+	polymerase	NA	NA	NA	NA	NA
AZQ17091.1|938163_939108_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SKV4	Klosneuvirus	37.8	7.3e-51
AZQ17092.1|939333_939528_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17093.1|939517_939871_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AZQ17094.1|939972_941520_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
AZQ17095.1|941700_942879_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
AZQ17096.1|943115_944840_+	peptidoglycan endopeptidase	NA	B5LJD6	Mycobacterium_phage	41.1	4.8e-16
AZQ17097.1|945154_946342_-|transposase	IS256 family transposase IS16	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
>prophage 8
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	1229272	1238428	2876110	transposase	Lysinibacillus_phage(16.67%)	10	NA	NA
AZQ17358.1|1229272_1230568_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
AZQ17359.1|1230635_1230830_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17360.1|1230842_1231220_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17361.1|1231475_1232204_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
AZQ17362.1|1232203_1232458_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AZQ17363.1|1232459_1233131_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AZQ17364.1|1233131_1235354_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.9e-150
AZQ17365.1|1235338_1236778_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
AZQ18880.1|1236809_1237853_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
AZQ17366.1|1237849_1238428_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
>prophage 9
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	1297638	1354865	2876110	transposase,tRNA	Lysinibacillus_phage(18.75%)	52	NA	NA
AZQ17420.1|1297638_1298940_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
AZQ17421.1|1299176_1299605_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17422.1|1299664_1300423_-	peptidase C39	NA	NA	NA	NA	NA
AZQ17423.1|1300717_1300915_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17424.1|1301020_1301503_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17425.1|1301560_1302157_-	nitroreductase family protein	NA	NA	NA	NA	NA
AZQ17426.1|1302543_1304010_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	38.6	3.4e-87
AZQ17427.1|1304144_1305440_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AZQ17428.1|1305710_1309238_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZQ17429.1|1309234_1312957_+	helicase-exonuclease AddAB subunit AddA	NA	S5MMD7	Bacillus_phage	23.3	2.7e-24
AZQ17430.1|1313025_1313367_+	transcriptional regulator	NA	NA	NA	NA	NA
AZQ17431.1|1313675_1314719_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	33.6	1.9e-31
AZQ17432.1|1314723_1317144_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZQ17433.1|1317313_1318324_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZQ17434.1|1318577_1319315_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	7.7e-32
AZQ17435.1|1319328_1320144_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZQ17436.1|1320156_1320804_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZQ17437.1|1320819_1321476_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZQ18885.1|1321637_1322459_+	glutamate racemase	NA	NA	NA	NA	NA
AZQ17438.1|1322461_1323817_+	ribonuclease PH	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	30.8	9.2e-15
AZQ17439.1|1323817_1324336_+	metallophosphoesterase	NA	NA	NA	NA	NA
AZQ17440.1|1324442_1324943_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZQ17441.1|1325222_1326143_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZQ17442.1|1326127_1326313_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17443.1|1326307_1327321_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
AZQ17444.1|1327430_1328186_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZQ17445.1|1328405_1328846_+	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	NA	NA	NA	NA	NA
AZQ17446.1|1328960_1329722_-	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	38.0	6.7e-23
AZQ17447.1|1329910_1331005_+	DUF871 domain-containing protein	NA	NA	NA	NA	NA
AZQ17448.1|1331090_1332050_-|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
AZQ17449.1|1332235_1333171_+	alpha/beta hydrolase	NA	W5S4D8	Pithovirus	25.4	2.0e-05
AZQ17450.1|1333255_1334266_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZQ17451.1|1334562_1335876_+	GTPase ObgE	NA	NA	NA	NA	NA
AZQ17452.1|1336096_1336684_+	DUF1269 domain-containing protein	NA	NA	NA	NA	NA
AZQ17453.1|1336860_1337802_+	ribonuclease Z	NA	NA	NA	NA	NA
AZQ17454.1|1337798_1338587_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
AZQ17455.1|1338596_1339031_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZQ17456.1|1339172_1341470_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	33.9	1.3e-80
AZQ17457.1|1341483_1341996_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.6	2.4e-32
AZQ17458.1|1342284_1342503_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17459.1|1342682_1343315_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	59.4	2.3e-16
AZQ17460.1|1343452_1343704_+	DUF896 family protein	NA	NA	NA	NA	NA
AZQ17461.1|1343805_1345803_+	transketolase	NA	NA	NA	NA	NA
AZQ17462.1|1345980_1346934_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AZQ17463.1|1347115_1348003_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0K2CP65	Brevibacillus_phage	43.2	4.5e-18
AZQ17464.1|1348142_1349069_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	57.2	2.7e-98
AZQ17465.1|1349304_1349751_+	transcriptional repressor	NA	NA	NA	NA	NA
AZQ17466.1|1350023_1351376_+	NADH dehydrogenase	NA	NA	NA	NA	NA
AZQ17467.1|1351504_1352800_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.7	2.9e-10
AZQ17468.1|1352867_1353092_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17469.1|1353068_1353356_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17470.1|1353569_1354865_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
>prophage 10
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	1359153	1416048	2876110	integrase,transposase,tRNA	Streptococcus_phage(29.41%)	51	1359305:1359322	1424480:1424497
AZQ17475.1|1359153_1360344_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	30.9	1.5e-29
1359305:1359322	attL	TTTAATTGTTTATTGTTT	NA	NA	NA	NA
AZQ17476.1|1360742_1362044_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AZQ17477.1|1362055_1362673_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17478.1|1362713_1363406_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17479.1|1363839_1365159_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	1.4e-209
AZQ17480.1|1365759_1366359_+|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	35.6	3.2e-28
AZQ17481.1|1366673_1367714_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AZQ17482.1|1367952_1368186_+	copper chaperone	NA	NA	NA	NA	NA
AZQ17483.1|1368383_1370288_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.1	1.4e-98
AZQ17484.1|1371091_1372270_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
AZQ17485.1|1372743_1374039_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
AZQ17486.1|1374132_1376514_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
AZQ17487.1|1376503_1377151_-	Holliday junction resolvase RecU	NA	A0A2H4J3A4	uncultured_Caudovirales_phage	37.5	1.7e-22
AZQ17488.1|1377214_1377754_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
AZQ17489.1|1377843_1378263_+	cell division regulator GpsB	NA	NA	NA	NA	NA
AZQ17490.1|1378860_1380027_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
AZQ17491.1|1380072_1381569_+	carboxypeptidase M32	NA	NA	NA	NA	NA
AZQ17492.1|1381649_1382333_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	2.5e-13
AZQ18887.1|1382332_1382554_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17493.1|1382530_1382710_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17494.1|1382977_1384168_+	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	33.3	8.3e-52
AZQ17495.1|1384269_1385223_+	L-threonine 3-dehydrogenase	NA	NA	NA	NA	NA
AZQ17496.1|1385291_1386641_+	amino acid permease	NA	NA	NA	NA	NA
AZQ17497.1|1386822_1387146_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17498.1|1387274_1388438_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17499.1|1388507_1389857_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	31.7	3.6e-51
AZQ17500.1|1389901_1390333_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZQ17501.1|1390420_1390615_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17502.1|1390720_1393363_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	34.4	7.4e-69
AZQ17503.1|1393562_1394159_+	ECF transporter S component	NA	NA	NA	NA	NA
AZQ17504.1|1394280_1395429_+	cation transporter	NA	NA	NA	NA	NA
AZQ17505.1|1395466_1395880_-	reverse transcriptase-like protein	NA	NA	NA	NA	NA
AZQ17506.1|1395958_1396390_+	ebsA protein	NA	NA	NA	NA	NA
AZQ17507.1|1396488_1396722_-	cold shock domain-containing protein	NA	Q9AZD3	Lactococcus_phage	49.2	5.6e-13
AZQ17508.1|1396903_1398574_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
AZQ17509.1|1398738_1400199_+|transposase	IS1182-like element ISEfa12 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.8	4.5e-124
AZQ17510.1|1400287_1400674_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17511.1|1400660_1401359_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZQ17512.1|1401363_1401828_+	signal peptidase II	NA	NA	NA	NA	NA
AZQ17513.1|1401824_1402736_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	29.6	2.2e-12
AZQ17514.1|1402970_1403510_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
AZQ17515.1|1403523_1404807_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	37.3	3.2e-65
AZQ17516.1|1404819_1405746_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	33.0	3.6e-26
AZQ17517.1|1405764_1407045_+	dihydroorotase	NA	NA	NA	NA	NA
AZQ17518.1|1407049_1408126_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.4	5.2e-61
AZQ17519.1|1408130_1411316_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZQ17520.1|1411369_1412146_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
AZQ17521.1|1412142_1413075_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AZQ17522.1|1413071_1413788_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
AZQ17523.1|1413794_1414424_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
AZQ17524.1|1414620_1416048_-|transposase	IS1182-like element ISEfa12 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.8	4.4e-124
1424480:1424497	attR	AAACAATAAACAATTAAA	NA	NA	NA	NA
>prophage 11
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	1450124	1482223	2876110	integrase,transposase,tail	Streptococcus_phage(28.57%)	28	1447494:1447510	1475283:1475299
1447494:1447510	attL	CATTTTCTTTGTTTTTT	NA	NA	NA	NA
AZQ17554.1|1450124_1451550_+|transposase	IS3-like element ISEfa10 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.2	2.3e-48
AZQ17555.1|1451748_1452735_-	DUF2382 domain-containing protein	NA	NA	NA	NA	NA
AZQ17556.1|1453467_1454499_+|integrase	integrase	integrase	NA	NA	NA	NA
AZQ17557.1|1454607_1456140_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZQ17558.1|1456278_1457091_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZQ17559.1|1457080_1457566_+	ECF transporter S component	NA	NA	NA	NA	NA
AZQ17560.1|1457588_1458134_+	TIGR01440 family protein	NA	NA	NA	NA	NA
AZQ17561.1|1458206_1459850_-	alpha-glucosidase	NA	NA	NA	NA	NA
AZQ17562.1|1460266_1460953_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AZQ17563.1|1461201_1462350_+|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
AZQ17564.1|1462490_1463402_-	APH(2'')-Ie/IVa family aminoglycoside O-phosphotransferase	NA	NA	NA	NA	NA
AZQ17565.1|1463666_1464353_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AZQ17566.1|1465998_1466478_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17567.1|1466708_1467557_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	37.4	9.8e-15
AZQ17568.1|1467713_1469324_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AZQ17569.1|1469567_1469885_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZQ17570.1|1469877_1470657_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZQ17571.1|1470789_1471725_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
AZQ17572.1|1471800_1472193_-	DUF4430 domain-containing protein	NA	NA	NA	NA	NA
AZQ17573.1|1472173_1472692_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17574.1|1472839_1473913_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17575.1|1473905_1474823_-	viral A-type inclusion protein	NA	NA	NA	NA	NA
AZQ17576.1|1475025_1475217_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17577.1|1475375_1476884_+	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
1475283:1475299	attR	CATTTTCTTTGTTTTTT	NA	NA	NA	NA
AZQ17578.1|1477057_1478353_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AZQ17579.1|1479906_1480455_+	guanylate kinase	NA	S4W1R9	Pandoravirus	29.4	9.5e-11
AZQ17580.1|1480710_1481223_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZQ17581.1|1481266_1482223_-|tail	phage tail protein	tail	NA	NA	NA	NA
>prophage 12
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	1531308	1580020	2876110	integrase,protease,transposase	Synechococcus_phage(23.08%)	59	1559255:1559270	1586638:1586653
AZQ17628.1|1531308_1532844_-|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.2	3.3e-125
AZQ17629.1|1533067_1533439_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17630.1|1533694_1533937_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZQ17631.1|1533968_1534871_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
AZQ17632.1|1534883_1535072_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
AZQ17633.1|1535085_1535649_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
AZQ17634.1|1535686_1536580_-	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	46.0	5.2e-59
AZQ17635.1|1536657_1537596_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
AZQ17636.1|1537629_1537980_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
AZQ17637.1|1538012_1538915_-	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
AZQ17638.1|1538907_1539765_-	glycosyltransferase family 8 protein	NA	A0ZYL4	Archaeal_BJ1_virus	27.1	1.3e-19
AZQ17639.1|1540098_1540908_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
AZQ17640.1|1540947_1541445_+	cysteine hydrolase	NA	NA	NA	NA	NA
AZQ17641.1|1542089_1542413_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17642.1|1542576_1542831_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17643.1|1542900_1543146_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17644.1|1543221_1543587_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17645.1|1543647_1544211_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17646.1|1544778_1544979_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	77.3	3.9e-23
AZQ17647.1|1545730_1546444_-	HAD family phosphatase	NA	A0A1D8KPI1	Synechococcus_phage	23.0	5.4e-06
AZQ17648.1|1546436_1547522_-	mannonate dehydratase	NA	NA	NA	NA	NA
AZQ17649.1|1547538_1547982_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
AZQ18891.1|1548015_1548369_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17650.1|1548480_1548882_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17651.1|1548918_1549428_-	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA	NA
AZQ17652.1|1549449_1550307_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
AZQ17653.1|1550324_1551158_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AZQ17654.1|1551171_1551969_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
AZQ17655.1|1552001_1552286_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZQ17656.1|1552282_1553284_-	hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	29.0	2.8e-24
AZQ18892.1|1553285_1554188_-	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	35.3	3.3e-53
AZQ17657.1|1554351_1555200_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17658.1|1555845_1556052_+	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
AZQ17659.1|1556253_1557255_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	31.8	2.5e-09
AZQ17660.1|1557259_1559173_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
1559255:1559270	attL	AGAACAGGATTATTTT	NA	NA	NA	NA
AZQ17661.1|1559340_1559847_-	cysteine hydrolase	NA	NA	NA	NA	NA
AZQ17662.1|1560006_1560447_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
AZQ17663.1|1560472_1561630_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17664.1|1561632_1561989_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17665.1|1562286_1563261_-	peptidase	NA	NA	NA	NA	NA
AZQ17666.1|1563456_1564296_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZQ17667.1|1564480_1565368_+	rotamase	NA	NA	NA	NA	NA
AZQ18893.1|1565961_1566657_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.5	1.0e-22
AZQ17668.1|1566640_1567039_-	PTS sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
AZQ17669.1|1567447_1568698_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
AZQ17670.1|1568839_1569835_-	PTS sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
AZQ17671.1|1569852_1570407_-	PTS glucitol/sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
AZQ17672.1|1570394_1570886_-	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17673.1|1570878_1572747_-	HTH domain-containing protein	NA	NA	NA	NA	NA
AZQ17674.1|1572765_1573566_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	2.6e-09
AZQ17675.1|1573789_1574005_+	DUF378 domain-containing protein	NA	NA	NA	NA	NA
AZQ17676.1|1574143_1574629_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17677.1|1575084_1575498_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	31.5	2.1e-07
AZQ17678.1|1575634_1575895_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17679.1|1575822_1576062_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17680.1|1576012_1576303_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17681.1|1576548_1577727_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
AZQ17682.1|1577882_1578836_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AZQ17683.1|1578892_1580020_+|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.5	1.8e-109
1586638:1586653	attR	AGAACAGGATTATTTT	NA	NA	NA	NA
>prophage 13
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	1661886	1734058	2876110	protease,transposase,tRNA	Streptococcus_phage(20.0%)	58	NA	NA
AZQ17757.1|1661886_1663137_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.5	5.5e-147
AZQ17758.1|1663383_1664673_-	trigger factor	NA	NA	NA	NA	NA
AZQ17759.1|1664826_1665759_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17760.1|1665915_1666575_-	RDD family protein	NA	NA	NA	NA	NA
AZQ17761.1|1666577_1667603_-	signal peptide peptidase SppA	NA	A0A2I6UH21	Salinibacter_virus	28.8	5.5e-20
AZQ17762.1|1667615_1667906_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17763.1|1668315_1670121_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.8	7.5e-97
AZQ17764.1|1670192_1671548_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZQ17765.1|1671571_1672741_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17766.1|1672737_1673625_-	TIGR00159 family protein	NA	NA	NA	NA	NA
AZQ17767.1|1673813_1677494_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA	NA
AZQ17768.1|1677691_1678213_+	DsbA family protein	NA	NA	NA	NA	NA
AZQ17769.1|1679655_1680312_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17770.1|1680879_1681815_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.1	2.0e-53
AZQ17771.1|1681848_1682847_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	62.9	4.4e-115
AZQ17772.1|1682843_1683728_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.4	5.4e-08
AZQ17773.1|1683862_1684594_-	amino acid racemase	NA	NA	NA	NA	NA
AZQ17774.1|1684597_1685863_-	D-aspartate ligase	NA	NA	NA	NA	NA
AZQ17775.1|1686125_1688942_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.5	1.0e-311
AZQ17776.1|1688951_1690946_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
AZQ17777.1|1691204_1692707_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AZQ17778.1|1692708_1693446_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	44.7	2.8e-34
AZQ17779.1|1693813_1694980_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.7	1.9e-24
AZQ17780.1|1695130_1696960_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	48.8	2.2e-136
AZQ17781.1|1697010_1697574_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AZQ17782.1|1697667_1698711_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
AZQ17783.1|1698945_1700112_-	oxygen-independent coproporphyrinogen III oxidase	NA	A0A0N7G7K6	Chrysochromulina_ericina_virus	33.6	5.0e-09
AZQ17784.1|1700127_1700355_-	adenosine deaminase	NA	NA	NA	NA	NA
AZQ17785.1|1700369_1700585_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17786.1|1700655_1701951_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
AZQ17787.1|1703243_1704122_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
AZQ17788.1|1704155_1704926_-	restriction endonuclease	NA	NA	NA	NA	NA
AZQ17789.1|1705567_1706239_-	zeta toxin family protein	NA	NA	NA	NA	NA
AZQ17790.1|1706761_1707352_+	glutamine amidotransferase	NA	NA	NA	NA	NA
AZQ17791.1|1707406_1707616_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17792.1|1707599_1708762_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
AZQ17793.1|1708911_1709625_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17794.1|1709739_1710750_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AZQ17795.1|1710786_1711269_-|tRNA	prolyl-tRNA editing protein	tRNA	NA	NA	NA	NA
AZQ17796.1|1711418_1711787_+	iron chaperone	NA	NA	NA	NA	NA
AZQ17797.1|1712251_1712704_+	DNA-binding protein	NA	NA	NA	NA	NA
AZQ17798.1|1712827_1713679_-	sugar transporter	NA	NA	NA	NA	NA
AZQ17799.1|1713691_1714477_-	glucose 1-dehydrogenase	NA	NA	NA	NA	NA
AZQ17800.1|1714871_1715813_-	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
AZQ17801.1|1715816_1716740_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AZQ17802.1|1716889_1717102_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17803.1|1717167_1718121_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AZQ17804.1|1718176_1720540_-	phosphoketolase family protein	NA	NA	NA	NA	NA
AZQ17805.1|1720987_1721209_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZQ17806.1|1721316_1721664_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AZQ17807.1|1721690_1723997_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.5	8.0e-19
AZQ17808.1|1724009_1724321_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
AZQ17809.1|1724317_1724611_-	YlxR family protein	NA	NA	NA	NA	NA
AZQ17810.1|1724632_1725808_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AZQ17811.1|1725831_1726305_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
AZQ17812.1|1726448_1730801_-	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	41.4	3.9e-22
AZQ17813.1|1731012_1732722_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
AZQ17814.1|1732789_1734058_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 14
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	1744254	1796567	2876110	protease,transposase,tRNA	Streptococcus_phage(22.22%)	50	NA	NA
AZQ17822.1|1744254_1745946_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.6	2.9e-74
AZQ17823.1|1746365_1747313_-	carbamate kinase	NA	NA	NA	NA	NA
AZQ17824.1|1747427_1748447_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AZQ17825.1|1748537_1749767_-	arginine deiminase	NA	NA	NA	NA	NA
AZQ17826.1|1750227_1750929_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17827.1|1751100_1752396_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
AZQ17828.1|1753059_1754076_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.0	5.4e-60
AZQ17829.1|1754072_1754537_-	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
AZQ17830.1|1754543_1755086_-	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
AZQ17831.1|1755069_1755894_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AZQ17832.1|1755982_1756963_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.9	5.8e-19
AZQ17833.1|1756986_1758471_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AZQ17834.1|1758482_1759472_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	2.1e-48
AZQ17835.1|1759719_1759887_+	DUF3042 family protein	NA	NA	NA	NA	NA
AZQ17836.1|1759948_1761760_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZQ17837.1|1761756_1762122_-	DUF488 family protein	NA	NA	NA	NA	NA
AZQ17838.1|1762284_1762680_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZQ17839.1|1762697_1763660_-	ROK family protein	NA	NA	NA	NA	NA
AZQ17840.1|1763659_1763872_-	DUF910 family protein	NA	NA	NA	NA	NA
AZQ17841.1|1763892_1764591_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AZQ17842.1|1764610_1765153_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZQ17843.1|1765284_1766289_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZQ17844.1|1766285_1767275_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZQ17845.1|1767271_1768078_-	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.0e-13
AZQ17846.1|1768243_1769200_+	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZQ17847.1|1769276_1769795_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	7.1e-24
AZQ17848.1|1769882_1770032_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZQ17849.1|1770259_1770706_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
AZQ17850.1|1770900_1772796_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
AZQ17851.1|1773120_1774095_-	linear amide C-N hydrolase	NA	M1H001	Paramecium_bursaria_Chlorella_virus	29.7	3.0e-23
AZQ17852.1|1774660_1775227_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17853.1|1775482_1776814_+	DUF1576 domain-containing protein	NA	NA	NA	NA	NA
AZQ17854.1|1776779_1777130_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17855.1|1777221_1777641_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZQ17856.1|1777641_1777986_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZQ17857.1|1778251_1779211_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
AZQ17858.1|1779400_1779997_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.7	8.7e-34
AZQ17859.1|1780120_1781920_+	glycerophosphodiester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	26.5	5.3e-10
AZQ17860.1|1782197_1782410_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17861.1|1783273_1784233_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	27.2	7.5e-11
AZQ17862.1|1784445_1785354_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
AZQ17863.1|1785402_1785789_+	YxeA family protein	NA	NA	NA	NA	NA
AZQ17864.1|1786096_1787443_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZQ17865.1|1787554_1788904_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
AZQ17866.1|1789020_1790274_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
AZQ17867.1|1790344_1790830_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZQ17868.1|1790852_1791611_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.4	1.9e-25
AZQ17869.1|1791626_1792805_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	3.9e-102
AZQ17870.1|1793034_1795155_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.0	8.2e-220
AZQ17871.1|1795271_1796567_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
>prophage 15
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	1802270	1873408	2876110	integrase,protease,transposase	Streptococcus_phage(57.89%)	75	1819017:1819041	1879779:1879803
AZQ17878.1|1802270_1803566_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AZQ17879.1|1803884_1804187_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17880.1|1804934_1805117_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17881.1|1805330_1805645_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17882.1|1805761_1806940_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
AZQ17883.1|1807276_1807516_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17884.1|1807877_1808138_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17885.1|1808322_1808820_-	GAF domain-containing protein	NA	NA	NA	NA	NA
AZQ17886.1|1808949_1809660_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
AZQ17887.1|1809672_1811337_-	acetolactate synthase AlsS	NA	NA	NA	NA	NA
AZQ17888.1|1811541_1812204_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
AZQ17889.1|1812213_1813029_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZQ17890.1|1813290_1813734_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17891.1|1813867_1814206_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17892.1|1814193_1814571_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17893.1|1814794_1815988_+	MFS transporter	NA	NA	NA	NA	NA
AZQ17894.1|1816153_1816576_-	HTH domain-containing protein	NA	NA	NA	NA	NA
AZQ17895.1|1816970_1817165_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17896.1|1817161_1817656_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17897.1|1817623_1817821_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17898.1|1817817_1818990_-	class C sortase	NA	NA	NA	NA	NA
1819017:1819041	attL	TATGAAGAGGTTGTGAAATCAGCGC	NA	NA	NA	NA
AZQ17899.1|1819195_1820011_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AZQ17900.1|1820160_1820607_-	cell wall anchor protein	NA	NA	NA	NA	NA
AZQ17901.1|1820603_1821617_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
AZQ17902.1|1821647_1822106_-	cell wall anchor protein	NA	NA	NA	NA	NA
AZQ17903.1|1822102_1824430_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AZQ17904.1|1825071_1825185_+|protease	CAAX protease	protease	NA	NA	NA	NA
AZQ17905.1|1825272_1825566_-	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
AZQ17906.1|1825602_1825788_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17907.1|1825968_1827147_-|integrase	site-specific integrase	integrase	S6C485	Thermus_phage	31.1	1.4e-30
AZQ17908.1|1827250_1827565_-	DNA-binding protein	NA	NA	NA	NA	NA
AZQ17909.1|1827671_1827887_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17910.1|1828186_1828429_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZQ17911.1|1828415_1828844_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AZQ17912.1|1828995_1830543_-|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
AZQ17913.1|1830644_1830998_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AZQ17914.1|1830987_1831182_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17915.1|1831312_1832475_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
AZQ17916.1|1833039_1833414_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZQ17917.1|1833436_1834837_-	beta-fructofuranosidase	NA	NA	NA	NA	NA
AZQ17918.1|1834840_1835251_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZQ17919.1|1835268_1835760_-	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA	NA
AZQ17920.1|1835769_1836561_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
AZQ17921.1|1836553_1837327_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AZQ17922.1|1837482_1840017_-	PRD domain-containing protein	NA	NA	NA	NA	NA
AZQ17923.1|1840098_1840971_-	ROK family protein	NA	NA	NA	NA	NA
AZQ17924.1|1841006_1841474_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
AZQ17925.1|1841483_1842953_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
AZQ17926.1|1843023_1844442_-	beta-fructofuranosidase	NA	NA	NA	NA	NA
AZQ17927.1|1844563_1845544_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17928.1|1845823_1846986_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	53.5	1.6e-79
AZQ17929.1|1847078_1847588_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ17930.1|1847926_1848880_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AZQ17931.1|1848832_1849069_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZQ17932.1|1849488_1850610_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AZQ18896.1|1850937_1852347_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
AZQ17933.1|1852343_1853072_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	37.1	5.1e-36
AZQ17934.1|1853199_1854111_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	42.2	1.1e-59
AZQ17935.1|1854127_1855135_-	lipoprotein	NA	A0A1S5SEZ8	Streptococcus_phage	63.9	4.8e-117
AZQ17936.1|1855131_1857261_-	FUSC family protein	NA	A0A1S5SF30	Streptococcus_phage	60.3	1.8e-182
AZQ17937.1|1857561_1858749_-|transposase	IS256 family transposase IS16	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
AZQ17938.1|1859793_1861620_-	group II intron reverse transcriptase/maturase	NA	H7BVW2	unidentified_phage	26.8	3.7e-11
AZQ17939.1|1863853_1864243_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	65.9	1.4e-40
AZQ17940.1|1864292_1865189_-	phosphoesterase	NA	A0A1B1IUG5	uncultured_Mediterranean_phage	29.7	1.1e-16
AZQ17941.1|1865191_1867039_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZQ17942.1|1867135_1867636_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.6	7.0e-53
AZQ17943.1|1867648_1867870_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	4.5e-28
AZQ17944.1|1867874_1868012_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AZQ17945.1|1868008_1869193_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	60.8	1.9e-141
AZQ17946.1|1869448_1869703_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17947.1|1869727_1870870_-	DNA cytosine methyltransferase	NA	A0A1S5SEK0	Streptococcus_phage	62.1	1.7e-126
AZQ17948.1|1870929_1872282_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	64.4	3.8e-162
AZQ17949.1|1872352_1872706_-	DNA-damage-inducible protein J	NA	NA	NA	NA	NA
AZQ17950.1|1872706_1873081_-	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	62.9	1.1e-34
AZQ17951.1|1873093_1873408_-	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.7e-25
1879779:1879803	attR	GCGCTGATTTCACAACCTCTTCATA	NA	NA	NA	NA
>prophage 16
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	1894019	1943656	2876110	transposase,tRNA	Streptococcus_phage(26.67%)	43	NA	NA
AZQ17973.1|1894019_1895198_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
AZQ17974.1|1895788_1896763_-	linear amide C-N hydrolase	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
AZQ17975.1|1897172_1898423_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
AZQ17976.1|1898708_1898966_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ17977.1|1899197_1899611_-	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
AZQ17978.1|1899889_1901229_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
AZQ17979.1|1901298_1901874_-	N-acetylmuramoyl-L-alanine amidase	NA	Q9MCC6	Lactobacillus_phage	35.9	4.8e-13
AZQ17980.1|1901954_1903116_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	2.7e-79
AZQ17981.1|1903490_1904060_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AZQ17982.1|1904133_1905423_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18897.1|1905776_1906625_+	MoxR family ATPase	NA	NA	NA	NA	NA
AZQ17983.1|1906638_1907712_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZQ17984.1|1907701_1909873_+	transglutaminase domain-containing protein	NA	NA	NA	NA	NA
AZQ18898.1|1909984_1912141_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	32.3	2.9e-71
AZQ17985.1|1912283_1914470_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.7	1.4e-121
AZQ17986.1|1914469_1914679_-	copper-binding protein	NA	NA	NA	NA	NA
AZQ17987.1|1914691_1915132_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
AZQ17988.1|1915205_1915679_-	topology modulation family protein	NA	A0A097BYE2	Leuconostoc_phage	28.8	1.1e-10
AZQ17989.1|1915988_1917455_-	amino acid permease	NA	NA	NA	NA	NA
AZQ17990.1|1917765_1919850_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.7	9.9e-117
AZQ17991.1|1920373_1920733_-	YccF domain-containing protein	NA	NA	NA	NA	NA
AZQ17992.1|1920762_1921104_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17993.1|1921100_1921775_-	GDSL family lipase	NA	NA	NA	NA	NA
AZQ17994.1|1922569_1923868_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.3	1.2e-59
AZQ18899.1|1923907_1925098_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZQ17995.1|1925118_1925646_-	peptidase	NA	NA	NA	NA	NA
AZQ17996.1|1925692_1928482_-	DNA polymerase III subunit epsilon	NA	A0A1X9I5C8	Streptococcus_phage	30.9	1.1e-89
AZQ17997.1|1928628_1928829_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	74.2	2.5e-22
AZQ17998.1|1929280_1929601_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ17999.1|1929878_1931174_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
AZQ18000.1|1931625_1932744_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18001.1|1933214_1934522_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
AZQ18002.1|1934640_1935840_+	YdcF family protein	NA	NA	NA	NA	NA
AZQ18003.1|1935866_1937135_-	voltage-gated chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.1	2.2e-42
AZQ18004.1|1938015_1938219_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18005.1|1938351_1938855_-	HD domain-containing protein	NA	NA	NA	NA	NA
AZQ18006.1|1938977_1939742_-	RNA methyltransferase	NA	A0A2D1A6G0	Rhodococcus_phage	26.1	1.7e-05
AZQ18007.1|1939849_1940125_+	acylphosphatase	NA	NA	NA	NA	NA
AZQ18008.1|1940192_1940384_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18009.1|1940562_1941513_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZQ18010.1|1941691_1941892_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18011.1|1941892_1942075_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18012.1|1942696_1943656_+|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	1959266	2017924	2876110	holin,transposase,tRNA	Streptococcus_phage(41.67%)	54	NA	NA
AZQ18028.1|1959266_1960220_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AZQ18029.1|1960529_1961294_-	tyrosine protein phosphatase	NA	NA	NA	NA	NA
AZQ18030.1|1961321_1962020_-	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	37.1	6.0e-26
AZQ18031.1|1962031_1962811_-	tyrosine protein kinase	NA	NA	NA	NA	NA
AZQ18032.1|1962826_1963771_-	transcriptional regulator	NA	NA	NA	NA	NA
AZQ18033.1|1963816_1964596_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18034.1|1964976_1967052_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZQ18035.1|1967053_1967971_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZQ18036.1|1968356_1969175_-	DNA repair protein RecO	NA	NA	NA	NA	NA
AZQ18037.1|1969317_1970217_-	GTPase Era	NA	NA	NA	NA	NA
AZQ18038.1|1970231_1970633_-	diacylglycerol kinase family protein	NA	NA	NA	NA	NA
AZQ18039.1|1970610_1971087_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
AZQ18040.1|1971115_1973308_-	HDIG domain-containing protein	NA	NA	NA	NA	NA
AZQ18041.1|1973331_1974303_-	PhoH family protein	NA	W8D063	Erwinia_phage	49.8	3.5e-48
AZQ18042.1|1975007_1976387_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
AZQ18043.1|1976668_1978009_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.0	1.9e-65
AZQ18044.1|1978165_1979461_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
AZQ18045.1|1979595_1980042_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.8	1.6e-19
AZQ18046.1|1980068_1980245_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZQ18047.1|1980406_1980835_-	transcriptional repressor	NA	NA	NA	NA	NA
AZQ18048.1|1980926_1981787_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
AZQ18049.1|1981880_1982174_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ18050.1|1982246_1983974_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	62.9	2.4e-209
AZQ18051.1|1984186_1985113_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.8	2.3e-89
AZQ18052.1|1985257_1986691_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
AZQ18053.1|1986690_1988094_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
AZQ18054.1|1988033_1988255_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18055.1|1988323_1989226_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ18056.1|1989266_1991153_-	PTS beta-glucoside transporter subunit EIIBCA	NA	NA	NA	NA	NA
AZQ18057.1|1992436_1994221_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.6	7.1e-47
AZQ18058.1|1994220_1995972_-	multidrug ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.4	1.6e-56
AZQ18059.1|1996113_1996338_-	YneF family protein	NA	NA	NA	NA	NA
AZQ18060.1|1996393_1996618_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18061.1|1996588_1998175_+	divalent metal cation transporter	NA	NA	NA	NA	NA
AZQ18062.1|1998240_2000016_-	glucosyltransferase	NA	NA	NA	NA	NA
AZQ18063.1|2000226_2001129_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	30.7	1.5e-21
AZQ18064.1|2001407_2003753_+	penicillin-binding protein	NA	NA	NA	NA	NA
AZQ18065.1|2003993_2005172_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
AZQ18066.1|2005261_2005528_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18067.1|2005520_2005844_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18068.1|2005855_2007112_-	lipase	NA	NA	NA	NA	NA
AZQ18069.1|2007108_2007504_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18070.1|2007546_2007798_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18071.1|2007797_2008193_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18072.1|2008547_2009549_-	catabolite control protein A	NA	NA	NA	NA	NA
AZQ18073.1|2009758_2010862_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
AZQ18074.1|2010924_2011527_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
AZQ18075.1|2011529_2011970_-	DUF948 domain-containing protein	NA	NA	NA	NA	NA
AZQ18076.1|2012094_2013033_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	51.2	5.5e-75
AZQ18077.1|2013047_2014073_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZQ18078.1|2014116_2014947_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AZQ18079.1|2014961_2015900_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZQ18080.1|2016163_2017456_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
AZQ18081.1|2017573_2017924_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 18
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	2212418	2278125	2876110	bacteriocin,protease,transposase,tRNA	Bacillus_phage(18.75%)	60	NA	NA
AZQ18267.1|2212418_2212898_-|tRNA	aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
AZQ18268.1|2213024_2214704_-	ribonuclease J	NA	NA	NA	NA	NA
AZQ18269.1|2214813_2215017_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18270.1|2215251_2216754_+	ABC transporter permease	NA	NA	NA	NA	NA
AZQ18271.1|2216766_2217429_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	2.5e-21
AZQ18272.1|2217529_2217733_-	CsbD family protein	NA	NA	NA	NA	NA
AZQ18273.1|2218003_2219152_-|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
AZQ18274.1|2219168_2219573_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
AZQ18275.1|2219734_2220919_-	beta-aspartyl-peptidase	NA	NA	NA	NA	NA
AZQ18276.1|2221075_2222815_-	putative basic amino acid antiporter YfcC	NA	NA	NA	NA	NA
AZQ18277.1|2223587_2224202_-	SIS domain-containing protein	NA	NA	NA	NA	NA
AZQ18278.1|2224807_2225185_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18279.1|2225484_2226366_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	50.3	1.3e-73
AZQ18280.1|2226408_2227428_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZQ18281.1|2228060_2229065_-	SIS domain-containing protein	NA	NA	NA	NA	NA
AZQ18282.1|2229077_2230127_-	SIS domain-containing protein	NA	NA	NA	NA	NA
AZQ18283.1|2230143_2230965_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
AZQ18284.1|2230951_2231731_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AZQ18285.1|2231747_2232218_-	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA	NA
AZQ18286.1|2232229_2232649_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZQ18287.1|2232729_2235498_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZQ18288.1|2235697_2235922_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18289.1|2236700_2238416_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.3	1.7e-50
AZQ18290.1|2238418_2240182_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.2	1.5e-44
AZQ18291.1|2240221_2240758_-	folate family ECF transporter S component	NA	NA	NA	NA	NA
AZQ18292.1|2241080_2241503_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZQ18293.1|2241711_2242821_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.0	1.2e-20
AZQ18294.1|2242944_2243574_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18295.1|2244024_2244909_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
AZQ18296.1|2244901_2245471_-	ribonuclease M5	NA	NA	NA	NA	NA
AZQ18297.1|2245463_2246240_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZQ18298.1|2246394_2247717_-	amino acid permease	NA	NA	NA	NA	NA
AZQ18299.1|2247891_2248479_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18300.1|2248623_2249919_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
AZQ18301.1|2250479_2252489_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.3	1.4e-96
AZQ18302.1|2252756_2253035_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18303.1|2253131_2253953_+	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	32.8	2.7e-25
AZQ18304.1|2253945_2254134_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18305.1|2254237_2255248_-|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	40.8	2.8e-56
AZQ18306.1|2255259_2256213_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	3.0e-20
AZQ18307.1|2256202_2257273_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.5e-20
AZQ18308.1|2257278_2258322_-	ABC transporter permease	NA	NA	NA	NA	NA
AZQ18309.1|2258322_2259264_-	ABC transporter permease	NA	NA	NA	NA	NA
AZQ18310.1|2259347_2259695_+	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
AZQ18311.1|2259764_2261426_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZQ18902.1|2261604_2261724_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AZQ18312.1|2261971_2262520_-	aminoglycoside N-acetyltransferase AAC(6')-Ii	NA	NA	NA	NA	NA
AZQ18313.1|2263072_2264176_+	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
AZQ18314.1|2264172_2264379_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18315.1|2264368_2265436_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZQ18316.1|2265665_2268113_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.7	8.1e-86
AZQ18317.1|2268301_2269738_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	29.4	1.4e-48
AZQ18318.1|2270056_2270872_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZQ18319.1|2270889_2271525_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	8.4e-27
AZQ18320.1|2271543_2272185_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZQ18321.1|2272664_2273150_+|tRNA	prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
AZQ18903.1|2273421_2275557_-	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
AZQ18322.1|2276081_2276381_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AZQ18323.1|2276731_2277364_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
AZQ18324.1|2277486_2278125_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 19
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	2342241	2375693	2876110	bacteriocin,protease,transposase	uncultured_virus(15.38%)	32	NA	NA
AZQ18386.1|2342241_2343429_-|transposase	IS256 family transposase IS16	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
AZQ18387.1|2343841_2345467_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	2.2e-156
AZQ18388.1|2345517_2345802_-	co-chaperone GroES	NA	A0A221S4M3	uncultured_virus	40.2	2.0e-12
AZQ18389.1|2346026_2346689_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZQ18390.1|2346764_2348057_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AZQ18391.1|2348226_2348856_+	flavin reductase	NA	NA	NA	NA	NA
AZQ18392.1|2348958_2349768_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.6	3.1e-34
AZQ18393.1|2349822_2350692_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18394.1|2350692_2352009_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18395.1|2352005_2353841_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	4.0e-37
AZQ18396.1|2353845_2354550_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	41.6	5.8e-45
AZQ18397.1|2354739_2355600_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	24.4	2.7e-12
AZQ18398.1|2355586_2356156_-	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
AZQ18399.1|2356785_2357739_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
AZQ18400.1|2357735_2357882_-|bacteriocin	EntF family bacteriocin induction factor	bacteriocin	NA	NA	NA	NA
AZQ18401.1|2357985_2358297_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
AZQ18402.1|2358298_2358496_-	enterocin	NA	NA	NA	NA	NA
AZQ18403.1|2358889_2360617_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AZQ18404.1|2360609_2361803_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.0	1.2e-29
AZQ18405.1|2361989_2362634_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ18406.1|2362581_2362773_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18407.1|2362727_2362862_-	FeoB-associated Cys-rich membrane protein	NA	NA	NA	NA	NA
AZQ18408.1|2362863_2364996_-	ferrous iron transport protein B	NA	NA	NA	NA	NA
AZQ18409.1|2364992_2365466_-	ferrous iron transport protein A	NA	NA	NA	NA	NA
AZQ18410.1|2365866_2366091_+	glutaredoxin-like protein NrdH	NA	A0A0M7REK7	Lactobacillus_phage	42.7	1.7e-11
AZQ18411.1|2366249_2368409_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.2	3.8e-265
AZQ18412.1|2368458_2369424_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.4	3.4e-128
AZQ18413.1|2369512_2370652_-	AI-2E family transporter	NA	NA	NA	NA	NA
AZQ18414.1|2370960_2371674_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	43.7	6.5e-20
AZQ18415.1|2371927_2372629_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
AZQ18416.1|2372862_2374395_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.0	3.3e-45
AZQ18417.1|2374784_2375693_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	2540529	2560056	2876110	holin,transposase,tRNA	Staphylococcus_phage(27.27%)	16	NA	NA
AZQ18554.1|2540529_2542944_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
AZQ18555.1|2543370_2545389_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXE4	Bacillus_phage	39.6	5.8e-13
AZQ18556.1|2545758_2546415_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZQ18557.1|2546414_2547371_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	57.4	3.3e-43
AZQ18558.1|2547370_2547937_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	42.8	2.2e-34
AZQ18559.1|2548372_2548603_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18560.1|2548795_2549983_-|transposase	IS256 family transposase IS16	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
AZQ18909.1|2550079_2550382_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18561.1|2550693_2551989_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
AZQ18562.1|2552678_2553698_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.4e-60
AZQ18563.1|2553708_2553915_-|holin	holin	holin	NA	NA	NA	NA
AZQ18564.1|2554047_2555007_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
AZQ18565.1|2555209_2556142_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	53.8	1.8e-57
AZQ18566.1|2556213_2556570_+	hypothetical protein	NA	U4KJ82	Streptococcus_phage	42.2	9.2e-15
AZQ18567.1|2556667_2557846_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
AZQ18568.1|2558716_2560056_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
>prophage 21
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	2696211	2757555	2876110	integrase,transposase	Streptococcus_phage(68.18%)	54	2686917:2686932	2757812:2757827
2686917:2686932	attL	TCTTTGCTTTCTTTTT	NA	NA	NA	NA
AZQ18690.1|2696211_2697675_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.5e-122
AZQ18691.1|2699167_2699440_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18692.1|2699839_2701002_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
AZQ18693.1|2701042_2701288_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AZQ18694.1|2701386_2701701_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18695.1|2701768_2702263_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18696.1|2702282_2702570_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18697.1|2702550_2702742_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18698.1|2702785_2704177_-	relaxase	NA	NA	NA	NA	NA
AZQ18699.1|2704161_2704773_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
AZQ18700.1|2704776_2704974_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18701.1|2704964_2707643_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18702.1|2707629_2707848_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18703.1|2707923_2708976_-	replication initiator protein A	NA	NA	NA	NA	NA
AZQ18704.1|2709128_2709455_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18705.1|2709466_2709667_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZQ18706.1|2709741_2710392_+	XRE family transcriptional regulator	NA	Q20DG0	Lactobacillus_phage	33.3	3.2e-05
AZQ18707.1|2710446_2711613_+|integrase	site-specific integrase	integrase	A0A172LN96	Lactococcus_phage	34.0	3.3e-45
AZQ18708.1|2712029_2715257_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AZQ18709.1|2715368_2715683_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	1.9e-24
AZQ18710.1|2715695_2716070_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	63.9	6.4e-35
AZQ18711.1|2716070_2716424_+	damage-inducible protein J	NA	NA	NA	NA	NA
AZQ18712.1|2716492_2717509_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	56.6	5.7e-102
AZQ18713.1|2718102_2719977_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
AZQ18913.1|2720102_2720459_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	84.6	1.3e-45
AZQ18714.1|2720503_2721646_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SEK0	Streptococcus_phage	62.4	1.6e-129
AZQ18715.1|2722180_2723365_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	63.2	8.3e-145
AZQ18716.1|2723361_2723475_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AZQ18717.1|2724244_2726155_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
AZQ18718.1|2726258_2726483_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.8	8.8e-24
AZQ18719.1|2726495_2726999_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.4	2.0e-52
AZQ18720.1|2727125_2728163_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18721.1|2728177_2729875_+	thiamine biosynthesis protein ThiF	NA	NA	NA	NA	NA
AZQ18722.1|2729867_2730329_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18723.1|2730341_2731202_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18914.1|2731239_2731629_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	67.5	5.1e-43
AZQ18724.1|2731615_2734063_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.4	0.0e+00
AZQ18725.1|2734067_2736176_+	FUSC family protein	NA	A0A1S5SF30	Streptococcus_phage	60.9	4.5e-178
AZQ18726.1|2736172_2737177_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	64.8	5.6e-118
AZQ18727.1|2737195_2738107_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	41.1	3.0e-62
AZQ18728.1|2738768_2738984_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18915.1|2739242_2739410_-	hypothetical protein	NA	A0A288TXV8	Enterococcus_phage	75.0	4.4e-12
AZQ18729.1|2741741_2742413_-	AP2 domain-containing protein	NA	A0A0C5K996	Enterococcus_phage	33.9	4.1e-08
AZQ18730.1|2742761_2744213_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A075BS18	Microcystis_phage	46.1	1.9e-18
AZQ18731.1|2744324_2745668_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZQ18732.1|2745801_2751000_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
AZQ18916.1|2751616_2751922_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18733.1|2752066_2753272_-	YSIRK-targeted surface antigen transcriptional regulator	NA	NA	NA	NA	NA
AZQ18734.1|2753965_2754352_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AZQ18735.1|2754449_2754641_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZQ18736.1|2755154_2755487_+|transposase	transposase	transposase	NA	NA	NA	NA
AZQ18737.1|2755396_2755600_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18738.1|2755783_2755939_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
AZQ18739.1|2756214_2757555_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.0	5.1e-66
2757812:2757827	attR	TCTTTGCTTTCTTTTT	NA	NA	NA	NA
>prophage 22
CP033206	Enterococcus faecium strain RBWH1 chromosome, complete genome	2876110	2783918	2851315	2876110	integrase,protease,transposase	Streptococcus_phage(27.27%)	53	2798349:2798364	2818814:2818829
AZQ18768.1|2783918_2785169_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
AZQ18769.1|2785356_2786181_-	5-deoxy-glucuronate isomerase	NA	NA	NA	NA	NA
AZQ18770.1|2786219_2788136_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	24.4	6.2e-25
AZQ18771.1|2788146_2789181_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA	NA
AZQ18772.1|2789337_2790354_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZQ18773.1|2790455_2790653_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18774.1|2790624_2791944_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AZQ18775.1|2792684_2793665_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
AZQ18776.1|2793677_2794556_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZQ18777.1|2794571_2795372_-	TrmB family transcriptional regulator	NA	NA	NA	NA	NA
AZQ18778.1|2796715_2797090_+	hypothetical protein	NA	Q9JMN8	Wolbachia_phage	34.6	1.2e-09
AZQ18917.1|2797097_2798006_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
2798349:2798364	attL	CTTTGTAAATACTCAA	NA	NA	NA	NA
AZQ18918.1|2798634_2798886_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZQ18779.1|2799427_2799586_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZQ18780.1|2799657_2800884_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
AZQ18781.1|2800972_2801365_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
AZQ18782.1|2801380_2801824_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
AZQ18783.1|2802342_2802810_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
AZQ18784.1|2802929_2804468_-	gluconokinase	NA	NA	NA	NA	NA
AZQ18785.1|2804547_2805234_+	prepilin peptidase	NA	NA	NA	NA	NA
AZQ18786.1|2805434_2805962_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AZQ18787.1|2806045_2806723_-	beta-phosphoglucomutase	NA	A0A1D8KNV9	Synechococcus_phage	23.2	1.6e-07
AZQ18788.1|2806719_2807850_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	51.6	1.6e-73
AZQ18789.1|2807849_2810033_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA	NA
AZQ18790.1|2810029_2811055_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZQ18791.1|2811099_2811927_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
AZQ18792.1|2811923_2812991_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZQ18793.1|2813016_2813853_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZQ18794.1|2813849_2814719_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZQ18795.1|2814788_2816072_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZQ18796.1|2816085_2817771_-	sugar phosphorylase	NA	NA	NA	NA	NA
AZQ18797.1|2818045_2819071_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
2818814:2818829	attR	TTGAGTATTTACAAAG	NA	NA	NA	NA
AZQ18798.1|2819665_2823319_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.9	8.4e-63
AZQ18799.1|2823397_2827024_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.7	1.5e-48
AZQ18800.1|2827742_2828711_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZQ18801.1|2828728_2829634_+	ABC transporter permease	NA	NA	NA	NA	NA
AZQ18802.1|2829630_2830437_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.1	1.3e-08
AZQ18803.1|2830448_2830589_+	biotin--acetyl-CoA-carboxylase ligase	NA	NA	NA	NA	NA
AZQ18804.1|2830593_2831562_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZQ18805.1|2831878_2832403_-	DUF664 domain-containing protein	NA	NA	NA	NA	NA
AZQ18806.1|2832689_2834672_+	choice-of-anchor A family protein	NA	NA	NA	NA	NA
AZQ18807.1|2834826_2835813_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
AZQ18808.1|2835835_2836402_-	Gx transporter family protein	NA	NA	NA	NA	NA
AZQ18809.1|2836415_2836832_-	NusG domain II-containing protein	NA	NA	NA	NA	NA
AZQ18810.1|2837334_2838627_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
AZQ18811.1|2838795_2840730_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZQ18812.1|2841031_2841967_+	FMN-binding protein	NA	NA	NA	NA	NA
AZQ18813.1|2842056_2843160_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
AZQ18814.1|2843172_2844126_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
AZQ18815.1|2844939_2846286_-	glutathione-disulfide reductase	NA	NA	NA	NA	NA
AZQ18919.1|2846419_2847661_-	U32 family peptidase	NA	Q6DW11	Phage_TP	32.9	1.2e-42
AZQ18816.1|2847678_2848602_-	U32 family peptidase	NA	NA	NA	NA	NA
AZQ18817.1|2848822_2851315_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A0A8J958	Klebsiella_phage	38.3	9.0e-125
>prophage 1
CP033207	Enterococcus faecium strain RBWH1 plasmid pRBWH1.1, complete sequence	167502	653	65198	167502	integrase,transposase	Paenibacillus_phage(25.0%)	55	38032:38091	73448:73544
AZQ18923.1|653_1780_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	54.1	5.0e-75
AZQ18924.1|1970_2303_-	hypothetical protein	NA	A0A2I7SC85	Paenibacillus_phage	57.7	2.6e-11
AZQ18925.1|2535_3698_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
AZQ18926.1|3766_3997_-	hypothetical protein	NA	A0A0C5AEB1	Paenibacillus_phage	57.5	2.4e-16
AZQ18927.1|5958_6918_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.5	5.0e-31
AZQ18928.1|7192_7843_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	34.4	2.3e-24
AZQ18929.1|10116_11304_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.0	2.4e-91
AZQ18930.1|11964_13077_-	SPASM domain-containing protein	NA	NA	NA	NA	NA
AZQ18931.1|13157_13862_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ18932.1|13981_15760_+	beta-galactosidase	NA	NA	NA	NA	NA
AZQ18933.1|15961_16366_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
AZQ18934.1|16382_17531_+|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
AZQ18935.1|17675_18134_+	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA	NA
AZQ18936.1|18156_18564_+	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
AZQ18937.1|19021_19834_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AZQ18938.1|19820_20636_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
AZQ18939.1|20824_21997_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AZQ18940.1|22286_23744_+	arylsulfatase	NA	NA	NA	NA	NA
AZQ18941.1|24284_25463_-|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	5.2e-30
AZQ18942.1|25728_26901_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AZQ19071.1|27045_27306_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18943.1|27579_28872_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	41.0	6.1e-32
AZQ18944.1|29262_30602_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
AZQ18945.1|30860_32022_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.2e-79
AZQ18946.1|32793_33528_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ18947.1|33543_34713_+	SIS domain-containing protein	NA	NA	NA	NA	NA
AZQ18948.1|34728_35724_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
AZQ18949.1|35802_36729_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZQ18950.1|36747_37998_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
38032:38091	attL	TCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTG	NA	NA	NA	NA
AZQ18951.1|38128_39082_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
AZQ18952.1|39189_40275_-	tyrosine recombinase XerS	NA	NA	NA	NA	NA
AZQ18953.1|41128_42424_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	29.8	5.3e-44
AZQ19072.1|43326_43530_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18954.1|43872_44391_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
AZQ18955.1|44757_45006_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18956.1|45051_45243_+	fructokinase	NA	NA	NA	NA	NA
AZQ18957.1|45508_46670_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
AZQ18958.1|47168_47645_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
AZQ18959.1|47657_49160_-	PTS glucose transporter subunit IIBC	NA	NA	NA	NA	NA
AZQ18960.1|49173_49863_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
AZQ18961.1|50023_50842_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZQ18962.1|51071_51302_+	resolvase	NA	NA	NA	NA	NA
AZQ19073.1|51633_51867_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18963.1|51887_52343_-|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.6	1.3e-13
AZQ18964.1|52585_54011_+|transposase	IS3-like element ISEfa10 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.2	2.3e-48
AZQ18965.1|54181_55144_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
AZQ18966.1|55145_56585_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.1	1.4e-16
AZQ18967.1|56769_58716_+	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
AZQ18968.1|58979_59852_+	ROK family protein	NA	NA	NA	NA	NA
AZQ18969.1|60867_61467_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18970.1|61530_62130_-|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	36.1	1.3e-29
AZQ18971.1|63083_63266_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ18972.1|63255_63435_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AZQ18973.1|63456_63582_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AZQ18974.1|63677_65198_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	31.6	1.1e-48
73448:73544	attR	TCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAA	NA	NA	NA	NA
>prophage 2
CP033207	Enterococcus faecium strain RBWH1 plasmid pRBWH1.1, complete sequence	167502	71610	119418	167502	holin,transposase,bacteriocin	Streptococcus_phage(43.75%)	55	NA	NA
AZQ18982.1|71610_72789_-|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
AZQ18983.1|73160_73424_-|bacteriocin	circular bacteriocin, circularin A/uberolysin family	bacteriocin	NA	NA	NA	NA
AZQ18984.1|73544_74498_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
AZQ18985.1|75143_75425_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18986.1|75466_75823_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18987.1|75881_76061_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18988.1|76076_76277_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18989.1|76505_76778_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18990.1|76958_77210_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18991.1|77209_77416_-	DNA helicase UvrA	NA	NA	NA	NA	NA
AZQ18992.1|77858_78083_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18993.1|78272_78395_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AZQ18994.1|78553_78787_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ18995.1|79319_80219_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
AZQ18996.1|80231_80828_-	transcriptional regulator	NA	NA	NA	NA	NA
AZQ18997.1|81073_81205_-	DNA topoisomerase	NA	NA	NA	NA	NA
AZQ18998.1|81173_83183_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	52.4	1.3e-110
AZQ18999.1|83193_84663_-	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
AZQ19000.1|84723_87096_-	hypothetical protein	NA	B5SP25	Lactococcus_phage	32.5	1.8e-13
AZQ19001.1|87505_88756_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
AZQ19002.1|89070_89361_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ19003.1|89379_89721_-	hypothetical protein	NA	F0PIH7	Enterococcus_phage	63.4	3.1e-36
AZQ19004.1|90339_90672_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
AZQ19005.1|91495_92536_-	replication protein RepA	NA	NA	NA	NA	NA
AZQ19006.1|94824_95079_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AZQ19007.1|95079_95397_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AZQ19008.1|95841_96528_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	5.9e-127
AZQ19009.1|98343_98913_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AZQ19010.1|98928_99333_+	DUF4430 domain-containing protein	NA	NA	NA	NA	NA
AZQ19011.1|99831_100518_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AZQ19012.1|100942_101779_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	47.2	4.0e-61
AZQ19013.1|101820_102183_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19014.1|102491_103007_+	DNA-deoxyinosine glycosylase	NA	NA	NA	NA	NA
AZQ19015.1|103071_103587_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19016.1|103686_103950_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ19074.1|103889_104174_+	DUF4357 domain-containing protein	NA	NA	NA	NA	NA
AZQ19017.1|104208_104439_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ19018.1|104814_105378_+	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	46.4	6.1e-37
AZQ19019.1|105482_106052_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19020.1|106099_106786_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AZQ19021.1|106827_107274_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19022.1|107287_107977_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19023.1|108101_110453_+	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
AZQ19024.1|110532_110928_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19025.1|111064_112237_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AZQ19026.1|112584_113202_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
AZQ19027.1|113242_113542_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19028.1|113676_114363_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AZQ19029.1|114945_115131_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19030.1|116020_116293_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
AZQ19031.1|116369_116699_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AZQ19032.1|116688_116976_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AZQ19033.1|117261_118119_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
AZQ19034.1|118119_118668_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19035.1|118737_119418_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	96.5	7.9e-124
>prophage 3
CP033207	Enterococcus faecium strain RBWH1 plasmid pRBWH1.1, complete sequence	167502	154645	163449	167502	transposase	Leptospira_phage(33.33%)	9	NA	NA
AZQ19061.1|154645_156193_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	28.9	1.7e-44
AZQ19062.1|156294_156648_-	IS66 family insertion sequence hypothetical protein	NA	S5VXZ8	Leptospira_phage	38.7	5.7e-17
AZQ19063.1|156637_156832_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ19076.1|156965_158531_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	31.6	2.4e-19
AZQ19064.1|158585_159860_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.6	1.2e-56
AZQ19077.1|159945_160086_+	RNA helicase	NA	NA	NA	NA	NA
AZQ19065.1|160147_160801_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.2	4.0e-24
AZQ19066.1|160797_162117_+	sensor histidine kinase	NA	NA	NA	NA	NA
AZQ19067.1|162261_163449_+|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.0	5.3e-91
>prophage 1
CP033208	Enterococcus faecium strain RBWH1 plasmid pRBWH1.2, complete sequence	55808	30280	38684	55808	transposase	Streptococcus_phage(50.0%)	9	NA	NA
AZQ19106.1|30280_32485_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	50.7	6.1e-117
AZQ19107.1|32730_33324_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZQ19108.1|33339_34239_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
AZQ19109.1|34241_34727_+	single-stranded DNA-binding protein	NA	W6LM61	Streptococcus_phage	58.0	1.1e-42
AZQ19110.1|35092_35353_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	3.4e-11
AZQ19111.1|35524_35719_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19112.1|35708_36062_+	IS66 family insertion sequence hypothetical protein	NA	S5VXZ8	Leptospira_phage	38.7	5.7e-17
AZQ19113.1|36163_37711_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	28.9	1.7e-44
AZQ19114.1|37997_38684_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
>prophage 1
CP033209	Enterococcus faecium strain RBWH1 plasmid pRBWH1.3, complete sequence	39621	0	30496	39621	bacteriocin,transposase	Streptococcus_phage(27.78%)	33	NA	NA
AZQ19136.1|761_1166_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
AZQ19137.1|1236_1641_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
AZQ19138.1|1657_2806_+|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
AZQ19139.1|4034_4121_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
AZQ19140.1|4241_4931_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ19141.1|4937_5216_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ19142.1|5175_6090_-	relaxase	NA	A0A1B0RXG0	Streptococcus_phage	47.3	4.5e-05
AZQ19175.1|6071_6452_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
AZQ19143.1|7144_7765_-	ABC transporter ATP-binding protein	NA	A0A2H4UUX5	Bodo_saltans_virus	29.0	1.4e-10
AZQ19144.1|7761_9888_-	hypothetical protein	NA	NA	NA	NA	NA
AZQ19145.1|9941_10316_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AZQ19146.1|10448_10910_+	XRE family transcriptional regulator	NA	D2XQ11	Bacillus_virus	36.1	1.7e-05
AZQ19147.1|11408_11948_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
AZQ19148.1|12025_12712_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AZQ19149.1|12909_13515_+	cell filamentation protein	NA	NA	NA	NA	NA
AZQ19150.1|13530_14103_+	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	46.0	6.8e-36
AZQ19176.1|14439_14679_+	hypothetical protein	NA	NA	NA	NA	NA
AZQ19151.1|14575_15148_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.1	5.0e-55
AZQ19152.1|15248_16411_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
AZQ19153.1|16451_16835_-	hypothetical protein	NA	A0A1P8CWQ3	Bacillus_phage	45.5	1.6e-12
AZQ19154.1|16816_17071_-|transposase	transposase	transposase	A0A1P8CWP5	Bacillus_phage	47.6	2.1e-13
AZQ19155.1|17263_17539_-	type III secretion system protein PrgO	NA	NA	NA	NA	NA
AZQ19156.1|17510_18464_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	26.1	7.7e-16
AZQ19157.1|19075_20569_+	replication protein RepR	NA	NA	NA	NA	NA
AZQ19158.1|20703_21000_+	type III secretion system protein PrgN	NA	NA	NA	NA	NA
AZQ19159.1|21023_21983_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	3.4e-32
AZQ19160.1|22839_23526_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AZQ19161.1|25364_26840_-	RNA-directed DNA polymerase	NA	Q2P9X6	Enterobacteria_phage	34.8	3.5e-68
AZQ19162.1|26817_27771_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
AZQ19163.1|28413_28977_+	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	46.4	2.3e-36
AZQ19164.1|29255_29543_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AZQ19165.1|29532_29862_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AZQ19166.1|30166_30496_+	transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	44.6	2.6e-16
>prophage 2
CP033209	Enterococcus faecium strain RBWH1 plasmid pRBWH1.3, complete sequence	39621	34397	38915	39621	transposase	Bacillus_phage(50.0%)	4	NA	NA
AZQ19171.1|34397_35366_-	D-lactate dehydrogenase VanH-A	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	33.1	3.5e-40
AZQ19172.1|35697_36990_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
AZQ19173.1|37087_38242_-	VanA-type vancomycin resistance histidine kinase VanS	NA	W8CYF6	Bacillus_phage	23.3	1.5e-13
AZQ19174.1|38219_38915_-	VanA-type vancomycin resistance DNA-binding response regulator VanR	NA	W8CYM9	Bacillus_phage	37.7	4.9e-36
