The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
AP018538	Enterococcus faecalis KUB3006 DNA, complete genome	2893216	698834	706753	2893216	transposase	Planktothrix_phage(16.67%)	11	NA	NA
BBD24220.1|698834_699893_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	2.0e-17
BBD24221.1|699892_700849_+	ABC transporter ATP-binding protein	NA	A0A1J0FA64	Only_Syngen_Nebraska_virus	23.9	3.2e-06
BBD24222.1|700889_701960_+|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	49.0	7.6e-89
BBD24223.1|702358_702880_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.3	3.0e-14
BBD24224.1|702993_703194_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
BBD24225.1|703254_703614_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
BBD24226.1|703659_704010_-	hypothetical protein	NA	NA	NA	NA	NA
BBD24227.1|704107_704467_+	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
BBD24228.1|704534_705029_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
BBD24229.1|705046_705562_+	GrpB family protein	NA	A0A2K5B2B6	Erysipelothrix_phage	48.8	7.7e-39
BBD24230.1|705577_706753_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	48.0	1.9e-85
>prophage 2
AP018538	Enterococcus faecalis KUB3006 DNA, complete genome	2893216	1095298	1109927	2893216	tail,holin	Enterococcus_phage(46.15%)	17	NA	NA
BBD24596.1|1095298_1095784_-	toxin	NA	A0A097BY56	Enterococcus_phage	70.5	4.4e-60
BBD24597.1|1095818_1096301_-	transcriptional regulator	NA	R9QTP6	Staphylococcus_phage	47.7	2.6e-20
BBD24598.1|1096698_1097454_+	DnaD domain protein	NA	A0A0K0MX39	Streptococcus_phage	56.0	8.7e-31
BBD24599.1|1097472_1098315_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	30.7	4.8e-30
BBD24600.1|1098317_1098410_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24601.1|1098402_1098633_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24602.1|1098793_1099201_+	transcriptional regulator	NA	NA	NA	NA	NA
BBD24603.1|1099446_1099839_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24604.1|1099851_1100364_+|tail	phage major tail protein, TP901-1 family	tail	W6LP72	Streptococcus_phage	49.4	8.8e-35
BBD24605.1|1100396_1100756_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	31.4	1.4e-07
BBD24606.1|1100773_1101142_+	hypothetical protein	NA	Q38180	Lactococcus_phage	32.0	3.3e-07
BBD24607.1|1101131_1104065_+	membrane protein	NA	A0A1U9WR55	Streptococcus_virus	25.0	1.1e-09
BBD24608.1|1104066_1104993_+|tail	phage tail family protein	tail	C9E2K5	Enterococcus_phage	78.6	9.0e-147
BBD24609.1|1105005_1106463_+	phage minor structural protein	NA	C9E2K6	Enterococcus_phage	47.7	1.9e-175
BBD24610.1|1106495_1108265_+	hypothetical protein	NA	A0A097BYA8	Enterococcus_phage	72.0	3.4e-142
BBD24611.1|1108288_1108684_+|holin	holin	holin	F0PIJ6	Enterococcus_phage	48.9	2.8e-33
BBD24612.1|1108829_1109927_+	endolysin	NA	A0A139ZVY1	Enterococcus_phage	44.6	4.0e-77
>prophage 3
AP018538	Enterococcus faecalis KUB3006 DNA, complete genome	2893216	1251493	1294136	2893216	head,terminase	Listeria_phage(48.72%)	66	NA	NA
BBD24739.1|1251493_1252090_-	hypothetical protein	NA	A0A059T7Z1	Listeria_phage	35.8	2.0e-30
BBD24740.1|1252117_1252582_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	36.6	1.1e-20
BBD24741.1|1252598_1252907_-	XRE family transcriptional regulator	NA	A0A1W6JQ26	Staphylococcus_phage	36.3	8.5e-09
BBD24742.1|1253049_1253319_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24743.1|1253297_1253444_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24744.1|1253506_1254067_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24745.1|1254047_1254278_+	DNA-binding protein	NA	NA	NA	NA	NA
BBD24746.1|1254289_1254457_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24747.1|1254457_1254673_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24748.1|1254728_1255019_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24749.1|1255023_1257138_+	hypothetical protein	NA	A0A1L2K2K3	Aeribacillus_phage	25.2	3.1e-49
BBD24750.1|1257138_1258311_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24751.1|1258310_1259012_+	MBL fold metallo-hydrolase	NA	A0A1L2JY21	Aeribacillus_phage	42.7	2.7e-50
BBD24752.1|1259029_1259788_+	DNA damage-inducible protein DnaD	NA	A0A1B0Y2R2	Lactobacillus_phage	61.4	7.4e-14
BBD24753.1|1259803_1260301_+	recombinase RecU	NA	A0A1L2JY30	Aeribacillus_phage	35.4	8.3e-14
BBD24754.1|1260321_1260636_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24755.1|1260719_1261469_+	hypothetical protein	NA	D2IZY3	Enterococcus_phage	84.5	6.7e-116
BBD24756.1|1261493_1261688_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24757.1|1261718_1261946_+	hypothetical protein	NA	C9E2N4	Enterococcus_phage	49.1	1.3e-06
BBD24758.1|1261987_1262305_+	DNA topoisomerase domain-containing protein	NA	NA	NA	NA	NA
BBD24759.1|1262304_1262472_+	hypothetical protein	NA	A0A097BY78	Enterococcus_phage	96.4	3.1e-21
BBD24760.1|1262464_1263031_+	DUF1642 domain-containing protein	NA	D2IZL3	Enterococcus_phage	49.0	1.5e-40
BBD24761.1|1263030_1263462_+	hypothetical protein	NA	C9E2N9	Enterococcus_phage	77.1	1.2e-29
BBD24762.1|1263475_1263793_+	replicase domain-containing protein	NA	NA	NA	NA	NA
BBD24763.1|1263786_1263993_+	hypothetical protein	NA	D2IZL5	Enterococcus_phage	86.4	1.6e-27
BBD24764.1|1263993_1264173_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24765.1|1264205_1264298_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24766.1|1264313_1264493_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24767.1|1264593_1265178_+	positive control factor	NA	NA	NA	NA	NA
BBD24768.1|1265612_1265816_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24769.1|1265917_1266187_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24770.1|1266231_1267500_+	adenine methyltransferase	NA	A0A2I4R670	Erysipelothrix_phage	46.4	7.6e-96
BBD24771.1|1267583_1267856_+	hypothetical protein	NA	A8ATN7	Listeria_phage	53.8	7.2e-12
BBD24772.1|1267870_1268596_+|terminase	terminase small subunit	terminase	A0A1W6JNJ8	Staphylococcus_phage	32.4	4.6e-05
BBD24773.1|1268576_1270013_+	hypothetical protein	NA	A5GYP8	Lactococcus_phage	72.1	1.9e-199
BBD24774.1|1270078_1270729_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24775.1|1270778_1272173_+	DUF1073 domain-containing protein	NA	A8ATG1	Listeria_phage	56.6	3.6e-147
BBD24776.1|1272162_1273407_+|head	minor head protein	head	A8ATG2	Listeria_phage	41.6	1.3e-52
BBD24777.1|1273399_1273564_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24778.1|1273620_1273908_+	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	68.3	1.7e-27
BBD24779.1|1273900_1274110_+	LysM domain-containing protein	NA	NA	NA	NA	NA
BBD24780.1|1274122_1275223_+	hypothetical protein	NA	A8ATG4	Listeria_phage	58.9	1.5e-87
BBD24781.1|1275225_1275696_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24782.1|1275717_1276599_+	DUF2184 domain-containing protein	NA	A8ATG6	Listeria_phage	51.8	3.9e-83
BBD24783.1|1276613_1277000_+	hypothetical protein	NA	D6PSX8	Lactobacillus_phage	35.8	4.6e-12
BBD24784.1|1277011_1277353_+	DUF4054 domain-containing protein	NA	A8ATG8	Listeria_phage	47.7	1.0e-18
BBD24785.1|1277352_1277955_+	hypothetical protein	NA	D6PSY0	Lactobacillus_phage	45.5	9.0e-39
BBD24786.1|1277954_1278329_+	hypothetical protein	NA	A8ATH0	Listeria_phage	50.8	5.6e-31
BBD24787.1|1278321_1278789_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24788.1|1278785_1279823_+	DUF3383 domain-containing protein	NA	A8ATH2	Listeria_phage	55.8	6.4e-101
BBD24789.1|1279838_1280237_+	hypothetical protein	NA	A8ATH3	Listeria_phage	54.0	6.6e-30
BBD24790.1|1280289_1280622_+	hypothetical protein	NA	A8ATH4	Listeria_phage	57.8	8.2e-26
BBD24791.1|1280805_1285971_+	peptidase M23	NA	A8ATH6	Listeria_phage	41.5	2.2e-149
BBD24792.1|1285970_1286528_+	peptidoglycan-binding protein LysM	NA	A8ATH7	Listeria_phage	43.2	2.8e-34
BBD24793.1|1286537_1286900_+	hypothetical protein	NA	A8ATH8	Listeria_phage	46.6	5.1e-29
BBD24794.1|1286900_1287731_+	hypothetical protein	NA	A8ATH9	Listeria_phage	45.4	1.7e-64
BBD24795.1|1287730_1288063_+	hypothetical protein	NA	A8ATI0	Listeria_phage	50.0	1.6e-21
BBD24796.1|1288062_1288410_+	DUF2634 domain-containing protein	NA	A0A2H4J4S8	uncultured_Caudovirales_phage	49.4	6.4e-13
BBD24797.1|1288402_1289557_+	hypothetical protein	NA	A8ATI2	Listeria_phage	54.1	5.6e-114
BBD24798.1|1289540_1290170_+	hypothetical protein	NA	A8ATI3	Listeria_phage	57.4	4.1e-58
BBD24799.1|1290188_1291832_+	hypothetical protein	NA	D2J018	Enterococcus_phage	66.3	2.6e-112
BBD24800.1|1291853_1292288_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24801.1|1292287_1292416_+	XkdX family protein	NA	NA	NA	NA	NA
BBD24802.1|1292420_1292777_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24803.1|1292773_1292971_+	hypothetical protein	NA	NA	NA	NA	NA
BBD24804.1|1293029_1294136_+	endolysin	NA	A0A139ZVY1	Enterococcus_phage	47.4	2.6e-84
>prophage 4
AP018538	Enterococcus faecalis KUB3006 DNA, complete genome	2893216	1586757	1595401	2893216		Synechococcus_phage(50.0%)	9	NA	NA
BBD25092.1|1586757_1587330_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.1	4.1e-25
BBD25093.1|1587326_1588358_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	M4QRQ6	Synechococcus_phage	45.6	1.1e-55
BBD25094.1|1588359_1589799_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.0	3.6e-49
BBD25095.1|1589774_1591994_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.9	3.3e-147
BBD25096.1|1591990_1592665_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
BBD25097.1|1592665_1592917_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
BBD25098.1|1592930_1593644_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3ELR0	Synechococcus_phage	42.5	7.4e-48
BBD25099.1|1593795_1594932_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
BBD25100.1|1594912_1595401_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.0	8.4e-19
>prophage 5
AP018538	Enterococcus faecalis KUB3006 DNA, complete genome	2893216	1733648	1786361	2893216	holin,tRNA,protease,capsid,terminase,integrase,tail,portal	Enterococcus_phage(30.0%)	66	1749053:1749071	1786417:1786435
BBD25231.1|1733648_1735418_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L424	Tupanvirus	30.3	3.0e-13
BBD25232.1|1735435_1736737_-|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	26.4	1.5e-22
BBD25233.1|1737094_1737541_-|tRNA	D-aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
BBD25234.1|1737564_1739778_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	38.0	1.3e-10
BBD25235.1|1739992_1740745_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
BBD25236.1|1740746_1741694_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
BBD25237.1|1741709_1742195_-	DUF3013 domain-containing protein	NA	NA	NA	NA	NA
BBD25238.1|1742151_1742829_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
BBD25239.1|1742957_1744235_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	49.9	1.8e-105
BBD25240.1|1744562_1744841_+	hypothetical protein	NA	NA	NA	NA	NA
BBD25241.1|1745019_1745493_+	universal stress protein	NA	NA	NA	NA	NA
BBD25242.1|1745604_1746792_-	acetate kinase	NA	NA	NA	NA	NA
BBD25243.1|1746816_1747788_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
BBD25244.1|1747952_1748306_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25245.1|1748305_1748740_-	competence protein ComG	NA	NA	NA	NA	NA
BBD25246.1|1748729_1749131_-	type II secretion system protein	NA	NA	NA	NA	NA
1749053:1749071	attL	CCACTCCCCATCTGAAATT	NA	NA	NA	NA
BBD25247.1|1749433_1749559_+	hypothetical protein	NA	NA	NA	NA	NA
BBD25248.1|1749857_1750775_-	ferrochelatase	NA	NA	NA	NA	NA
BBD25249.1|1751541_1751766_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25250.1|1751865_1752066_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.8	3.5e-24
BBD25251.1|1752901_1754161_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0S2MYF3	Enterococcus_phage	90.5	7.5e-221
BBD25252.1|1754214_1754643_-|holin	holin	holin	F0PIJ6	Enterococcus_phage	53.4	5.1e-36
BBD25253.1|1754642_1755179_-	hypothetical protein	NA	D2J074	Enterococcus_phage	90.4	1.4e-86
BBD25254.1|1755179_1756208_-	hypothetical protein	NA	D2J073	Enterococcus_phage	57.3	6.8e-103
BBD25255.1|1756218_1757343_-	hypothetical protein	NA	Q77MU2	Lactococcus_phage	45.3	8.8e-88
BBD25256.1|1757345_1758245_-|tail	phage tail family protein	tail	D2J071	Enterococcus_phage	37.4	2.9e-49
BBD25257.1|1758244_1762996_-|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	43.0	7.2e-14
BBD25258.1|1763014_1763137_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25259.1|1763217_1763565_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25260.1|1763621_1764095_-|tail	tail protein	tail	A0A1D6Z291	Staphylococcus_phage	45.1	6.0e-22
BBD25261.1|1764168_1764762_-|tail	tail protein	tail	A0A060AKE9	Staphylococcus_phage	35.1	2.6e-22
BBD25262.1|1764794_1765190_-	hypothetical protein	NA	A0A059T681	Listeria_phage	44.2	2.9e-17
BBD25263.1|1765186_1765591_-	hypothetical protein	NA	A0A2P0ZLD7	Lactobacillus_phage	44.1	9.7e-21
BBD25264.1|1765587_1765962_-	hypothetical protein	NA	A8ATA1	Listeria_phage	52.1	1.5e-28
BBD25265.1|1765948_1766254_-	hypothetical protein	NA	A0A0U4K528	Bacillus_phage	47.5	1.3e-09
BBD25266.1|1766331_1767477_-|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	56.0	7.8e-116
BBD25267.1|1767503_1768277_-|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	50.6	4.0e-55
BBD25268.1|1768248_1769424_-|portal	phage portal protein	portal	A0A2H4JBZ5	uncultured_Caudovirales_phage	40.5	8.4e-73
BBD25269.1|1769580_1769742_+	hypothetical protein	NA	NA	NA	NA	NA
BBD25270.1|1769686_1771366_-|terminase	terminase large subunit	terminase	D2XR15	Bacillus_phage	68.9	1.4e-225
BBD25271.1|1771362_1771674_-	hypothetical protein	NA	D2XR14	Bacillus_phage	49.0	1.2e-15
BBD25272.1|1771766_1772438_-	hypothetical protein	NA	A0A0B5A095	Streptococcus_phage	47.9	1.1e-16
BBD25273.1|1772556_1772871_-	HNH endonuclease	NA	A0A1S5SFB3	Streptococcus_phage	58.0	3.5e-26
BBD25274.1|1772867_1773197_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25275.1|1773269_1774016_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25276.1|1774390_1774858_-	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	27.9	3.8e-08
BBD25277.1|1775186_1775435_+	hypothetical protein	NA	NA	NA	NA	NA
BBD25278.1|1775520_1775727_-	hypothetical protein	NA	A0A1B1V001	Enterococcus_phage	96.8	1.3e-24
BBD25279.1|1775742_1776348_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25280.1|1776367_1776838_-	DUF1064 domain-containing protein	NA	A0A1I9KKZ1	Lactobacillus_phage	45.9	1.9e-31
BBD25281.1|1776816_1776990_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25282.1|1776986_1777256_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25283.1|1777394_1778234_-	DNA replication protein DnaC	NA	U5PVD6	Bacillus_phage	31.7	2.0e-20
BBD25284.1|1778245_1779001_-	DnaD domain protein	NA	B4XYS6	Lactobacillus_phage	63.6	7.6e-43
BBD25285.1|1779015_1779831_-	hypothetical protein	NA	J7KGZ1	Streptococcus_phage	49.8	2.5e-60
BBD25286.1|1779793_1780810_-	DNA recombination protein RecT	NA	A0A1S5SAA8	Streptococcus_phage	44.5	5.4e-60
BBD25287.1|1780912_1781137_-	hypothetical protein	NA	D2IZX4	Enterococcus_phage	58.9	1.5e-15
BBD25288.1|1781133_1781457_-	hypothetical protein	NA	D2IYT5	Enterococcus_phage	64.5	5.9e-29
BBD25289.1|1781496_1781712_-	hypothetical protein	NA	A0A0S2MY96	Enterococcus_phage	75.0	1.3e-16
BBD25290.1|1781718_1782030_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25291.1|1782040_1782217_-	XRE family transcriptional regulator	NA	D2IZW2	Enterococcus_phage	65.5	1.7e-14
BBD25292.1|1782528_1782861_+	transcriptional regulator	NA	A0A097QQ00	Enterococcus_phage	69.1	2.6e-35
BBD25293.1|1782877_1783222_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A097QQ08	Enterococcus_phage	73.5	2.9e-42
BBD25294.1|1783306_1784221_+	hypothetical protein	NA	NA	NA	NA	NA
BBD25295.1|1784388_1785117_+	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	48.4	2.4e-22
BBD25296.1|1785212_1786361_+|integrase	site-specific integrase	integrase	A0A0M5M609	Bacillus_phage	29.3	2.9e-38
1786417:1786435	attR	CCACTCCCCATCTGAAATT	NA	NA	NA	NA
>prophage 6
AP018538	Enterococcus faecalis KUB3006 DNA, complete genome	2893216	1850089	1936015	2893216	holin,tRNA,terminase,capsid,integrase,tail,portal,transposase,head	Enterococcus_phage(78.26%)	101	1895196:1895222	1936090:1936116
BBD25350.1|1850089_1851019_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
BBD25351.1|1851019_1851766_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	41.2	3.6e-13
BBD25352.1|1852793_1854158_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25353.1|1854154_1855120_-	glycosyltransferase	NA	A0A075B8F6	Enterobacteria_phage	43.3	2.4e-65
BBD25354.1|1855407_1855863_+|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	36.8	5.1e-18
BBD25355.1|1855989_1856940_-	epimerase	NA	A0A1V0SKV4	Klosneuvirus	36.5	4.4e-48
BBD25356.1|1857562_1858948_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25357.1|1859011_1859416_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	37.0	1.7e-17
BBD25358.1|1859412_1860300_-	glycosyl transferase	NA	NA	NA	NA	NA
BBD25359.1|1860299_1861733_-	sugar isomerase	NA	NA	NA	NA	NA
BBD25360.1|1861742_1862894_-	teichoic acid biosynthesis protein F	NA	NA	NA	NA	NA
BBD25361.1|1862890_1863889_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	43.5	5.4e-12
BBD25362.1|1864015_1867333_-	hypothetical protein	NA	D6PSS2	Lactobacillus_phage	34.1	2.9e-22
BBD25363.1|1867350_1868178_-	ammonia monooxygenase	NA	F2Y1U7	Organic_Lake_phycodnavirus	29.1	1.2e-12
BBD25364.1|1868188_1869586_-	sugar transferase	NA	NA	NA	NA	NA
BBD25365.1|1869691_1870993_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25366.1|1871021_1872992_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25367.1|1873025_1875167_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
BBD25368.1|1875178_1878322_-	glycosyl transferase family 2	NA	NA	NA	NA	NA
BBD25369.1|1878311_1879529_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.0	1.5e-08
BBD25370.1|1879541_1880336_-	ABC transporter permease	NA	NA	NA	NA	NA
BBD25371.1|1880583_1880925_+	hypothetical protein	NA	NA	NA	NA	NA
BBD25372.1|1880998_1881349_-	DUF2304 domain-containing protein	NA	NA	NA	NA	NA
BBD25373.1|1881348_1882092_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
BBD25374.1|1882126_1882969_-	dTDP-4-dehydrorhamnose reductase	NA	A0A1D8EQE2	Escherichia_phage	33.6	2.5e-26
BBD25375.1|1883061_1884090_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	41.9	1.9e-68
BBD25376.1|1884114_1884687_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	50.3	2.4e-41
BBD25377.1|1884699_1885566_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	63.9	6.1e-105
BBD25378.1|1885687_1886401_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
BBD25379.1|1886404_1887232_-	glycosyl transferase family 2	NA	NA	NA	NA	NA
BBD25380.1|1887231_1888014_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
BBD25381.1|1888141_1889278_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
BBD25382.1|1889388_1890297_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
BBD25383.1|1890312_1891077_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
BBD25384.1|1891251_1891695_+	flavodoxin	NA	NA	NA	NA	NA
BBD25385.1|1891769_1892243_-	tryptophan-rich sensory protein	NA	NA	NA	NA	NA
BBD25386.1|1892400_1892973_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
BBD25387.1|1893219_1894458_+	aminopeptidase	NA	NA	NA	NA	NA
BBD25388.1|1894716_1895097_+	PH domain-containing protein	NA	A6N235	Microbacterium_phage	33.0	2.5e-10
1895196:1895222	attL	TCAGACACATGGCGGCACTTGCTTAGT	NA	NA	NA	NA
BBD25389.1|1895430_1895679_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	100.0	1.6e-37
BBD25390.1|1895774_1896737_-	hypothetical protein	NA	A0A0S2MYH0	Enterococcus_phage	100.0	3.1e-182
BBD25391.1|1897038_1897428_+	hypothetical protein	NA	NA	NA	NA	NA
BBD25392.1|1897439_1898036_+	hypothetical protein	NA	NA	NA	NA	NA
BBD25393.1|1898137_1899397_-	1,4-beta-N-acetylmuramidase	NA	A0A0S2MYF3	Enterococcus_phage	97.6	1.5e-237
BBD25394.1|1899401_1899605_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	100.0	2.6e-30
BBD25395.1|1899601_1899829_-	hypothetical protein	NA	A0A0S2MYL7	Enterococcus_phage	98.6	1.3e-30
BBD25396.1|1899920_1902305_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	100.0	0.0e+00
BBD25397.1|1902316_1902490_-	hypothetical protein	NA	A0A0S2MYG7	Enterococcus_phage	100.0	2.3e-24
BBD25398.1|1902490_1904509_-	phage minor structural protein, region	NA	A0A0S2MYF5	Enterococcus_phage	100.0	1.4e-309
BBD25399.1|1904525_1905455_-|tail	tail protein	tail	A0A097BY64	Enterococcus_phage	99.4	8.1e-172
BBD25400.1|1905455_1908863_-	tape measure domain-containing protein	NA	A0A0S2MYN1	Enterococcus_phage	100.0	0.0e+00
BBD25401.1|1908878_1909136_-	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	100.0	1.6e-40
BBD25402.1|1909228_1909579_-	hypothetical protein	NA	A0A0S2MYH5	Enterococcus_phage	100.0	2.5e-57
BBD25403.1|1909634_1910093_-	hypothetical protein	NA	A0A0S2MYH7	Enterococcus_phage	100.0	3.7e-77
BBD25404.1|1910170_1910701_-|tail	phage major tail protein, TP901-1 family	tail	A0A0S2MYF4	Enterococcus_phage	100.0	1.5e-93
BBD25405.1|1910716_1911106_-|capsid	phage capsid protein	capsid	A0A0S2MYG3	Enterococcus_phage	99.2	6.6e-67
BBD25406.1|1911102_1911483_-	hypothetical protein	NA	A0A0S2MYE9	Enterococcus_phage	100.0	2.1e-65
BBD25407.1|1911457_1911793_-	hypothetical protein	NA	A0A0S2MYE1	Enterococcus_phage	100.0	1.1e-57
BBD25408.1|1911789_1912122_-	hypothetical protein	NA	A0A0S2MYD5	Enterococcus_phage	100.0	5.5e-54
BBD25409.1|1912195_1913128_-|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	100.0	2.3e-174
BBD25410.1|1913140_1913740_-	hypothetical protein	NA	A0A0S2MYF0	Enterococcus_phage	100.0	3.5e-75
BBD25411.1|1913862_1914195_-	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	100.0	2.1e-58
BBD25412.1|1914220_1914490_-	hypothetical protein	NA	A0A0S2MYD1	Enterococcus_phage	100.0	3.8e-45
BBD25413.1|1914490_1915429_-|head	phage head morphogenesis protein	head	A0A0S2MYG5	Enterococcus_phage	100.0	9.7e-173
BBD25414.1|1915433_1916972_-|portal	phage portal protein	portal	A0A1B1V003	Enterococcus_phage	99.8	1.9e-287
BBD25415.1|1916989_1918288_-|terminase	PBSX family phage terminase large subunit	terminase	D2J001	Enterococcus_phage	92.1	4.9e-231
BBD25416.1|1918280_1919075_-|terminase	small subunit of terminase	terminase	D2J000	Enterococcus_phage	91.8	5.6e-121
BBD25417.1|1919127_1919352_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25418.1|1920932_1921349_-	autolysin	NA	D2IZL7	Enterococcus_phage	99.3	1.7e-68
BBD25419.1|1921771_1921942_-	hypothetical protein	NA	D2IZL5	Enterococcus_phage	85.7	8.2e-22
BBD25420.1|1921941_1922103_-	hypothetical protein	NA	D2IZL4	Enterococcus_phage	92.5	5.9e-22
BBD25421.1|1922103_1922622_-	hypothetical protein	NA	D2IZZ0	Enterococcus_phage	37.5	9.9e-18
BBD25422.1|1922597_1922837_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25423.1|1922848_1923100_-	hypothetical protein	NA	A0A0Y0C5A8	Bacillus_phage	39.0	7.9e-05
BBD25424.1|1923096_1923420_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25425.1|1923425_1923662_-	hypothetical protein	NA	A0A096XT77	Enterococcus_phage	43.6	2.2e-09
BBD25426.1|1923676_1923901_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25427.1|1923900_1924248_-	hypothetical protein	NA	D2IZY9	Enterococcus_phage	61.2	4.6e-27
BBD25428.1|1924284_1924464_-	hypothetical protein	NA	D2IZY7	Enterococcus_phage	96.6	9.8e-26
BBD25429.1|1924756_1925140_-	class I SAM-dependent methyltransferase	NA	D2IYU6	Enterococcus_phage	96.1	1.1e-71
BBD25430.1|1925193_1925394_-	hypothetical protein	NA	A0A1B1V001	Enterococcus_phage	90.0	7.4e-22
BBD25431.1|1925478_1925748_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25432.1|1925759_1926287_-	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	58.3	9.0e-43
BBD25433.1|1926276_1926585_-	hypothetical protein	NA	D2IZR4	Enterococcus_phage	90.9	1.6e-44
BBD25434.1|1926584_1927598_-	hypothetical protein	NA	A0A0S2MYA8	Enterococcus_phage	99.3	1.7e-159
BBD25435.1|1927616_1928297_-	hypothetical protein	NA	A0A0S2MYA3	Enterococcus_phage	100.0	4.8e-129
BBD25436.1|1928293_1929274_-	DUF1351 domain-containing protein	NA	A0A0S2MYB3	Enterococcus_phage	99.7	1.5e-123
BBD25437.1|1929216_1929894_-	single-stranded DNA-binding protein	NA	A0A0S2MYH3	Enterococcus_phage	100.0	3.3e-122
BBD25438.1|1929894_1930131_-	hypothetical protein	NA	A0A0S2MYD6	Enterococcus_phage	100.0	6.2e-36
BBD25439.1|1930187_1930343_-	hypothetical protein	NA	A0A0S2MYB0	Enterococcus_phage	100.0	8.2e-21
BBD25440.1|1930343_1930454_-	hypothetical protein	NA	C9E2M6	Enterococcus_phage	94.1	2.3e-09
BBD25441.1|1930450_1930624_-	hypothetical protein	NA	A0A0S2MY96	Enterococcus_phage	100.0	4.0e-24
BBD25442.1|1930645_1930894_-	hypothetical protein	NA	A0A0S2MYC6	Enterococcus_phage	100.0	2.1e-42
BBD25443.1|1930909_1931629_-	oxidoreductase	NA	A0A0S2MYI3	Enterococcus_phage	100.0	2.3e-134
BBD25444.1|1931710_1931944_-	DUF739 domain-containing protein	NA	A0A0S2MYC3	Enterococcus_phage	100.0	7.8e-39
BBD25445.1|1932102_1932675_+	transcriptional regulator	NA	C9E2M1	Enterococcus_phage	98.9	7.4e-99
BBD25446.1|1932691_1933165_+	hypothetical protein	NA	A0A0S2MYA6	Enterococcus_phage	100.0	5.4e-87
BBD25447.1|1933253_1933955_+	hypothetical protein	NA	A0A0S2MYA9	Enterococcus_phage	100.0	5.5e-96
BBD25448.1|1933978_1934179_+	hypothetical protein	NA	A0A0S2MYA2	Enterococcus_phage	100.0	7.4e-30
BBD25449.1|1934239_1934812_+	hypothetical protein	NA	A0A1B1UZZ9	Enterococcus_phage	100.0	9.4e-86
BBD25450.1|1934878_1936015_+|integrase	site-specific integrase	integrase	A0A0S2MYI6	Enterococcus_phage	100.0	2.9e-211
1936090:1936116	attR	TCAGACACATGGCGGCACTTGCTTAGT	NA	NA	NA	NA
>prophage 7
AP018538	Enterococcus faecalis KUB3006 DNA, complete genome	2893216	2343153	2352893	2893216		Streptococcus_phage(57.14%)	11	NA	NA
BBD25818.1|2343153_2345337_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.8	3.1e-286
BBD25819.1|2345369_2345966_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.4	6.0e-51
BBD25820.1|2346010_2347129_-	DNA polymerase IV	NA	NA	NA	NA	NA
BBD25821.1|2347254_2348013_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
BBD25822.1|2347996_2348659_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.1	6.7e-19
BBD25823.1|2348673_2349546_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	57.6	6.2e-81
BBD25824.1|2349657_2350005_-	initiation-control protein YabA	NA	M1PFV3	Streptococcus_phage	36.7	8.1e-16
BBD25825.1|2349997_2350837_-	signal peptidase II	NA	NA	NA	NA	NA
BBD25826.1|2350953_2351904_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.0	6.2e-34
BBD25827.1|2351905_2352235_-	hypothetical protein	NA	NA	NA	NA	NA
BBD25828.1|2352254_2352893_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	53.8	2.1e-54
>prophage 8
AP018538	Enterococcus faecalis KUB3006 DNA, complete genome	2893216	2752076	2817423	2893216	protease,integrase,holin,transposase	Streptococcus_phage(21.43%)	56	2744593:2744610	2820426:2820443
2744593:2744610	attL	AATTTTAGGAATTGTTGC	NA	NA	NA	NA
BBD26209.1|2752076_2752652_-|integrase	integrase	integrase	E2ELN7	Clostridium_phage	39.7	1.7e-26
BBD26210.1|2752860_2754069_+|integrase	site-specific integrase	integrase	A0A172LN96	Lactococcus_phage	34.5	2.8e-55
BBD26211.1|2754430_2754823_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
BBD26212.1|2754836_2755382_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
BBD26213.1|2755501_2755969_-	DNA starvation/stationary phase protection protein	NA	C1KFH1	Lactobacillus_virus	25.9	1.0e-05
BBD26214.1|2756096_2756816_-	lipoprotein	NA	NA	NA	NA	NA
BBD26215.1|2756899_2758420_-	gluconate kinase	NA	NA	NA	NA	NA
BBD26216.1|2758528_2759221_+	prepilin peptidase	NA	NA	NA	NA	NA
BBD26217.1|2759401_2760706_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.1	1.2e-43
BBD26218.1|2760803_2764457_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.8	1.4e-65
BBD26219.1|2764623_2768238_-	DNA-directed RNA polymerase, beta subunit	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.5	2.0e-48
BBD26220.1|2768459_2768597_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26221.1|2768608_2768950_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SAB3	Streptococcus_phage	42.5	4.2e-17
BBD26222.1|2768949_2769180_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26223.1|2769353_2769569_-	DNA-binding protein	NA	NA	NA	NA	NA
BBD26224.1|2769707_2770700_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
BBD26225.1|2770766_2771399_-	RloB domain-containing protein	NA	NA	NA	NA	NA
BBD26226.1|2771407_2772703_-	abortive infection protein	NA	NA	NA	NA	NA
BBD26227.1|2772728_2772863_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26228.1|2773164_2774781_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
BBD26229.1|2775050_2775194_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
BBD26230.1|2775388_2778388_-	WxL domain-containing protein	NA	NA	NA	NA	NA
BBD26231.1|2778719_2782649_-	WxL domain-containing protein	NA	NA	NA	NA	NA
BBD26232.1|2782635_2782998_-	cell wall surface anchor protein	NA	NA	NA	NA	NA
BBD26233.1|2783384_2784332_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
BBD26234.1|2784345_2785413_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
BBD26235.1|2785667_2786597_-	FMN-binding domain-containing protein	NA	NA	NA	NA	NA
BBD26236.1|2786874_2788821_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
BBD26237.1|2789038_2789461_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26238.1|2789472_2790030_+	heptaprenyl diphosphate synthase subunit I	NA	NA	NA	NA	NA
BBD26239.1|2790067_2791054_+	geranylgeranyl pyrophosphate synthase	NA	NA	NA	NA	NA
BBD26240.1|2791374_2791605_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
BBD26241.1|2791594_2791960_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SEX8	Streptococcus_phage	42.5	6.1e-14
BBD26242.1|2792447_2794526_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26243.1|2794948_2795740_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.8	3.1e-23
BBD26244.1|2795732_2796326_-	non-canonical purine NTP pyrophosphatase	NA	A0A1K0ISQ7	Cassava_brown_streak_virus	34.3	1.5e-09
BBD26245.1|2796329_2796890_-	GTP cyclohydrolase I FolE	NA	S4VV34	Pandoravirus	49.1	2.0e-32
BBD26246.1|2796892_2797378_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
BBD26247.1|2797378_2797741_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
BBD26248.1|2798327_2799149_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26249.1|2799152_2799800_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26250.1|2799796_2800504_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26251.1|2800867_2800972_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26252.1|2801267_2802617_-	glutathione-disulfide reductase	NA	NA	NA	NA	NA
BBD26253.1|2802703_2802997_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26254.1|2802981_2803107_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26255.1|2803129_2804269_-	transcriptional regulator	NA	B6SBZ6	Clostridium_virus	33.2	5.1e-43
BBD26256.1|2804246_2804912_-	conserved hypothetical protein	NA	NA	NA	NA	NA
BBD26257.1|2805174_2806728_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
BBD26258.1|2806728_2807823_-	DUF917 domain-containing protein	NA	NA	NA	NA	NA
BBD26259.1|2807842_2809111_-	cytosine permease	NA	NA	NA	NA	NA
BBD26260.1|2809797_2811360_-	PucR family transcriptional regulator	NA	NA	NA	NA	NA
BBD26261.1|2811383_2812631_-|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	34.2	8.7e-44
BBD26262.1|2812658_2813579_-	U32 family peptidase	NA	NA	NA	NA	NA
BBD26263.1|2813759_2814794_-	FUSC family protein	NA	NA	NA	NA	NA
BBD26264.1|2814927_2817423_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A0A8J958	Klebsiella_phage	39.5	1.9e-127
2820426:2820443	attR	GCAACAATTCCTAAAATT	NA	NA	NA	NA
>prophage 9
AP018538	Enterococcus faecalis KUB3006 DNA, complete genome	2893216	2858991	2876514	2893216	transposase	Streptococcus_phage(100.0%)	17	NA	NA
BBD26292.1|2858991_2859306_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
BBD26293.1|2859324_2859708_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	2.3e-64
BBD26294.1|2859736_2861122_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
BBD26295.1|2861299_2862505_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
BBD26296.1|2862547_2862769_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
BBD26297.1|2862885_2863383_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
BBD26298.1|2863357_2863864_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
BBD26299.1|2863847_2866295_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
BBD26300.1|2866297_2868475_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
BBD26301.1|2868471_2869473_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
BBD26302.1|2869469_2870402_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
BBD26303.1|2870778_2872698_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
BBD26304.1|2873043_2873397_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
BBD26305.1|2873901_2874324_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
BBD26306.1|2874320_2874551_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
BBD26307.1|2875011_2875215_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
BBD26308.1|2875296_2876514_+|transposase	transposase	transposase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
>prophage 1
AP018539	Enterococcus faecalis plasmid pKUB3006-1 KUB3006 DNA, complete genome	106370	1762	53490	106370	protease,transposase	Streptococcus_phage(47.06%)	55	NA	NA
BBD26332.1|1762_2431_-|protease	putative protease	protease	NA	NA	NA	NA
BBD26333.1|2466_2784_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26334.1|3628_3928_+	replication control protein PrgN	NA	NA	NA	NA	NA
BBD26335.1|4712_5255_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26336.1|5264_6197_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	32.0	4.2e-35
BBD26337.1|6778_7795_+	replication protein RepA	NA	NA	NA	NA	NA
BBD26338.1|7940_9101_+	TraB family protein	NA	NA	NA	NA	NA
BBD26339.1|9155_10001_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
BBD26340.1|10828_11209_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26341.1|11208_11481_+	pheromone-responsive regulatory protein S	NA	NA	NA	NA	NA
BBD26342.1|11793_12087_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26343.1|12049_14773_+	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA	NA
BBD26344.1|14916_15252_+	hypothetical protein	NA	F0PIH7	Enterococcus_phage	69.4	2.3e-39
BBD26345.1|15541_19459_+	aggregation substance	NA	NA	NA	NA	NA
BBD26346.1|19520_19877_+	PrgU-like protein	NA	NA	NA	NA	NA
BBD26347.1|19898_20285_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26348.1|20352_20613_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26349.1|20623_21502_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26350.1|21521_21866_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26351.1|21914_22364_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
BBD26352.1|22389_23661_+	CHAP domain-containing protein	NA	A0A1P8CMP9	Staphylococcus_phage	36.2	7.6e-11
BBD26353.1|23663_24281_+	conserved hypothetical protein	NA	NA	NA	NA	NA
BBD26354.1|24312_24681_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26355.1|24777_26061_-|transposase	putative transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.8	5.8e-43
BBD26356.1|26229_26529_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26357.1|26521_27556_+	conjugal transfer protein	NA	NA	NA	NA	NA
BBD26358.1|27545_27821_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26359.1|27820_28210_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26360.1|28241_28724_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26361.1|28816_29275_+	single-stranded DNA-binding protein	NA	Q9B008	Lactococcus_phage	59.2	6.6e-42
BBD26362.1|29307_31872_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26363.1|31828_32224_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26364.1|32241_34587_+	MAEBL family membrane protein	NA	NA	NA	NA	NA
BBD26365.1|34573_36832_+	putative type IV secretion-system coupling protein	NA	NA	NA	NA	NA
BBD26366.1|37411_38140_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
BBD26367.1|38145_38634_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26368.1|38859_39234_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26369.1|39240_39507_+	hypothetical protein	NA	A0A1W6JN36	Lactococcus_phage	68.2	2.0e-22
BBD26370.1|39668_40445_+	hypothetical protein	NA	A8ATL9	Listeria_phage	44.6	2.5e-17
BBD26371.1|40441_41776_+	PcfJ protein	NA	A8ATM0	Listeria_phage	42.0	1.9e-97
BBD26372.1|41915_42392_+	single-stranded DNA-binding protein	NA	A0A1S5PRS2	Streptococcus_phage	49.5	8.8e-21
BBD26373.1|43164_43851_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
BBD26374.1|43886_44216_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26375.1|44233_44443_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26376.1|44475_44577_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26377.1|44945_45284_-|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	94.5	4.6e-56
BBD26378.1|45625_45844_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
BBD26379.1|45833_46448_+	XRE family transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	46.8	5.5e-07
BBD26380.1|46574_47540_+	bacitracin ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	47.6	2.6e-43
BBD26381.1|47580_48282_+	bacitracin transport permease BCRB	NA	NA	NA	NA	NA
BBD26382.1|48281_49112_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
BBD26383.1|49309_49996_-|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	90.7	2.1e-116
BBD26384.1|50652_51390_+	23S rRNA methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	1.2e-133
BBD26385.1|51402_52188_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	5.5e-153
BBD26386.1|52803_53490_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
>prophage 2
AP018539	Enterococcus faecalis plasmid pKUB3006-1 KUB3006 DNA, complete genome	106370	59007	103624	106370	integrase,transposase	Streptococcus_phage(50.0%)	46	84640:84654	104498:104512
BBD26391.1|59007_59904_+	partitioning protein ParA	NA	A0A1X9I765	Streptococcus_phage	99.3	1.9e-154
BBD26392.1|59995_60211_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	97.1	4.2e-31
BBD26393.1|60228_60501_+	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
BBD26394.1|60502_61366_+	toxin zeta	NA	NA	NA	NA	NA
BBD26395.1|61487_61787_+	chaperone protein DnaJ	NA	NA	NA	NA	NA
BBD26396.1|62069_62666_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
BBD26397.1|62796_63858_+	ABC-type transporter ATP-binding protein EcsA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	3.6e-22
BBD26398.1|63881_65495_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26399.1|65566_66091_-|integrase	integrase core domain protein	integrase	W5R8L2	Staphylococcus_phage	44.4	8.1e-36
BBD26400.1|66132_66819_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
BBD26401.1|67132_67738_+	resolvase family site-specific recombinase	NA	M9Q1K0	Clostridium_phage	31.9	5.7e-17
BBD26402.1|67734_69258_-	putative RNA helicase	NA	NA	NA	NA	NA
BBD26403.1|69471_70650_+|transposase	ISEf1, transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
BBD26404.1|70801_71500_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	7.1e-136
BBD26405.1|71496_72039_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
BBD26406.1|72140_72926_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	5.5e-153
BBD26407.1|73675_74413_+	23S rRNA methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
BBD26408.1|74357_74549_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	95.2	1.6e-26
BBD26409.1|74717_75581_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	A0A1X9I6F2	Streptococcus_phage	100.0	8.7e-168
BBD26410.1|75624_76152_+	adenine phosphoribosyltransferase	NA	A0A1X9I6E2	Streptococcus_phage	100.0	1.9e-93
BBD26411.1|76283_77093_+	streptomycin 3''-adenylyltransferase	NA	NA	NA	NA	NA
BBD26412.1|77310_77562_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26413.1|77612_78071_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26414.1|78132_78717_+	hypothetical protein	NA	A0A2K5B2B4	Erysipelothrix_phage	31.1	4.1e-20
BBD26415.1|79159_80644_+	putative ABC transporter ATP-binding protein YheS	NA	A0A2H4UUX5	Bodo_saltans_virus	26.0	2.6e-26
BBD26416.1|80697_81501_+	lincosamide nucleotidyltransferase	NA	NA	NA	NA	NA
BBD26417.1|81949_83029_-|transposase	putative transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.5	1.6e-38
BBD26418.1|83528_83753_+	helix-turn-helix domain protein	NA	NA	NA	NA	NA
BBD26419.1|83767_84637_+	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	92.0	1.2e-153
BBD26420.1|84617_85352_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
84640:84654	attL	ATAATATATTTTTTC	NA	NA	NA	NA
BBD26421.1|85384_85906_+	N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	4.9e-73
BBD26422.1|85906_86290_+	hypothetical protein	NA	A0A1X9I6C2	Streptococcus_phage	98.4	1.8e-69
BBD26423.1|86267_87338_+	hypothetical protein	NA	A0A0N9SKF6	Staphylococcus_phage	99.7	5.8e-206
BBD26424.1|87395_87512_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26425.1|87625_88804_+|transposase	ISEf1, transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
BBD26426.1|89328_89742_-	toxin Doc	NA	A0A0N9SKD8	Staphylococcus_phage	41.5	6.7e-17
BBD26427.1|89738_89975_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26428.1|90425_93542_-	type III restriction enzyme, res subunit	NA	A0A2K5B256	Erysipelothrix_phage	34.3	2.0e-129
BBD26429.1|93576_95346_-	putative methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	40.7	3.4e-102
BBD26430.1|95348_95906_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26431.1|96018_97302_-|transposase	putative transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.8	5.8e-43
BBD26432.1|97446_100635_-	ATP-dependent RNA helicase RhlE	NA	A0A2K5B2B9	Erysipelothrix_phage	41.1	9.8e-217
BBD26433.1|100652_100763_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26434.1|101428_102019_-	recombinase	NA	D2XR58	Bacillus_phage	35.1	7.0e-28
BBD26435.1|102476_103250_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	55.9	1.0e-71
BBD26436.1|103360_103624_-|transposase	putative transposase	transposase	A0A1P8CWP5	Bacillus_phage	45.2	3.1e-12
104498:104512	attR	ATAATATATTTTTTC	NA	NA	NA	NA
>prophage 1
AP018541	Enterococcus faecalis plasmid pKUB3006-3 KUB3006 DNA, complete genome	59322	2066	58390	59322	transposase	Streptococcus_phage(68.97%)	63	NA	NA
BBD26517.1|2066_2684_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	36.1	4.5e-17
BBD26518.1|2683_4828_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	96.9	2.5e-264
BBD26519.1|4916_5813_+	partitioning protein ParA	NA	A0A1X9I765	Streptococcus_phage	98.2	8.2e-153
BBD26520.1|5904_6120_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	97.1	4.2e-31
BBD26521.1|6136_6409_+	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
BBD26522.1|6410_7274_+	toxin zeta	NA	NA	NA	NA	NA
BBD26523.1|7447_8812_-|transposase	putative transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	43.5	7.2e-100
BBD26524.1|9009_9429_-	metallothiol transferase FosB	NA	NA	NA	NA	NA
BBD26525.1|9726_9855_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26526.1|9880_10021_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	93.0	8.0e-15
BBD26527.1|9965_10703_-	23S rRNA methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
BBD26528.1|11605_11722_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26529.1|11694_12012_+	hypothetical protein	NA	A0A1W6JN36	Lactococcus_phage	79.4	3.5e-26
BBD26530.1|12536_13043_+	chaperone protein DnaJ	NA	NA	NA	NA	NA
BBD26531.1|13147_13381_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26532.1|13403_13661_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26533.1|13663_13963_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26534.1|14275_16240_+	Mobilization protein A	NA	NA	NA	NA	NA
BBD26535.1|16263_16596_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26536.1|16614_16998_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26537.1|17080_17644_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26538.1|17654_19616_+	AAA-like domain protein	NA	NA	NA	NA	NA
BBD26539.1|19629_20982_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26540.1|21003_22113_+	N-acetylmuramoyl-L-alanine amidase domain-containing protein precursor	NA	A0A1S5SEZ8	Streptococcus_phage	43.1	4.4e-39
BBD26541.1|22125_22677_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26542.1|22681_23113_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26543.1|23105_24761_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
BBD26544.1|24778_25702_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26545.1|25701_26634_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26546.1|26650_27622_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26547.1|27650_28019_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26548.1|28078_28828_+	cell wall surface anchor protein	NA	NA	NA	NA	NA
BBD26549.1|29255_30449_-|transposase	putative transposase	transposase	A0A1S5SEW7	Streptococcus_phage	64.1	2.1e-143
BBD26550.1|30527_30734_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	87.3	1.1e-25
BBD26551.1|30726_31869_-	hypothetical protein	NA	A0A1S5SEX3	Streptococcus_phage	36.2	4.8e-65
BBD26552.1|32377_33013_+	HTH-type transcriptional regulator SinR	NA	NA	NA	NA	NA
BBD26553.1|33503_34436_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	9.0e-171
BBD26554.1|34812_36732_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
BBD26555.1|37077_37431_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
BBD26556.1|37790_37979_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26557.1|37998_38355_+	RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	60.3	3.5e-30
BBD26558.1|38956_39514_-	zeta toxin	NA	NA	NA	NA	NA
BBD26559.1|39704_40487_-	tetracycline resistance protein, class B	NA	NA	NA	NA	NA
BBD26560.1|40528_41215_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	97.3	3.6e-124
BBD26561.1|41517_41856_+	morphine 6-dehydrogenase	NA	NA	NA	NA	NA
BBD26562.1|42085_44113_+	beta-lactam-inducible penicillin-binding protein	NA	NA	NA	NA	NA
BBD26563.1|44739_45426_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
BBD26564.1|45675_46071_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26565.1|46395_47013_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
BBD26566.1|47053_47353_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26567.1|47386_47584_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26568.1|47886_48219_+	hypothetical protein	NA	NA	NA	NA	NA
BBD26569.1|48251_48536_-	hypothetical protein	NA	NA	NA	NA	NA
BBD26570.1|48528_49419_-	hypothetical protein	NA	F0PIG8	Enterococcus_phage	31.7	1.5e-29
BBD26571.1|50107_51628_+	repS protein	NA	NA	NA	NA	NA
BBD26572.1|51921_52608_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	5.0e-126
BBD26573.1|52692_53373_+|transposase	IS256 family transposase IS256	transposase	A0A0N9S006	Staphylococcus_phage	100.0	8.8e-75
BBD26574.1|53502_54942_-	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A0N9SKF6	Staphylococcus_phage	99.6	7.2e-284
BBD26575.1|54942_55326_-	N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	98.4	3.1e-69
BBD26576.1|55315_56452_-	hypothetical protein	NA	A0A0N9SKF6	Staphylococcus_phage	100.0	3.6e-222
BBD26577.1|56608_57295_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	4.5e-127
BBD26578.1|57516_58254_+	23S rRNA methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	1.6e-133
BBD26579.1|58198_58390_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	93.7	1.8e-25
