The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
AP018543	Enterococcus faecalis KUB3007 DNA, complete genome	2890148	1092230	1106859	2890148	holin,tail	Enterococcus_phage(46.15%)	17	NA	NA
BBD27637.1|1092230_1092716_-	toxin	NA	A0A097BY56	Enterococcus_phage	70.5	4.4e-60
BBD27638.1|1092750_1093233_-	transcriptional regulator	NA	R9QTP6	Staphylococcus_phage	47.7	2.6e-20
BBD27639.1|1093630_1094386_+	DnaD domain protein	NA	A0A0K0MX39	Streptococcus_phage	56.0	8.7e-31
BBD27640.1|1094404_1095247_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	30.7	4.8e-30
BBD27641.1|1095249_1095342_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27642.1|1095334_1095565_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27643.1|1095725_1096133_+	transcriptional regulator	NA	NA	NA	NA	NA
BBD27644.1|1096378_1096771_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27645.1|1096783_1097296_+|tail	phage major tail protein, TP901-1 family	tail	W6LP72	Streptococcus_phage	49.4	8.8e-35
BBD27646.1|1097328_1097688_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	31.4	1.4e-07
BBD27647.1|1097705_1098074_+	hypothetical protein	NA	Q38180	Lactococcus_phage	32.0	3.3e-07
BBD27648.1|1098063_1100997_+	membrane protein	NA	A0A1U9WR55	Streptococcus_virus	25.0	1.1e-09
BBD27649.1|1100998_1101925_+|tail	phage tail family protein	tail	C9E2K5	Enterococcus_phage	78.6	9.0e-147
BBD27650.1|1101937_1103395_+	phage minor structural protein	NA	C9E2K6	Enterococcus_phage	47.7	1.9e-175
BBD27651.1|1103427_1105197_+	hypothetical protein	NA	A0A097BYA8	Enterococcus_phage	72.0	3.4e-142
BBD27652.1|1105220_1105616_+|holin	holin	holin	F0PIJ6	Enterococcus_phage	48.9	2.8e-33
BBD27653.1|1105761_1106859_+	endolysin	NA	A0A139ZVY1	Enterococcus_phage	44.6	4.0e-77
>prophage 2
AP018543	Enterococcus faecalis KUB3007 DNA, complete genome	2890148	1248425	1291068	2890148	head,terminase	Listeria_phage(48.72%)	66	NA	NA
BBD27780.1|1248425_1249022_-	hypothetical protein	NA	A0A059T7Z1	Listeria_phage	35.8	2.0e-30
BBD27781.1|1249049_1249514_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	36.6	1.1e-20
BBD27782.1|1249530_1249839_-	XRE family transcriptional regulator	NA	A0A1W6JQ26	Staphylococcus_phage	36.3	8.5e-09
BBD27783.1|1249981_1250251_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27784.1|1250229_1250376_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27785.1|1250438_1250999_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27786.1|1250979_1251210_+	DNA-binding protein	NA	NA	NA	NA	NA
BBD27787.1|1251221_1251389_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27788.1|1251389_1251605_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27789.1|1251660_1251951_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27790.1|1251955_1254070_+	hypothetical protein	NA	A0A1L2K2K3	Aeribacillus_phage	25.2	3.1e-49
BBD27791.1|1254070_1255243_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27792.1|1255242_1255944_+	MBL fold metallo-hydrolase	NA	A0A1L2JY21	Aeribacillus_phage	42.7	2.7e-50
BBD27793.1|1255961_1256720_+	DNA damage-inducible protein DnaD	NA	A0A1B0Y2R2	Lactobacillus_phage	61.4	7.4e-14
BBD27794.1|1256735_1257233_+	recombinase RecU	NA	A0A1L2JY30	Aeribacillus_phage	35.4	8.3e-14
BBD27795.1|1257253_1257568_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27796.1|1257651_1258401_+	hypothetical protein	NA	D2IZY3	Enterococcus_phage	84.5	6.7e-116
BBD27797.1|1258425_1258620_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27798.1|1258650_1258878_+	hypothetical protein	NA	C9E2N4	Enterococcus_phage	49.1	1.3e-06
BBD27799.1|1258919_1259237_+	DNA topoisomerase domain-containing protein	NA	NA	NA	NA	NA
BBD27800.1|1259236_1259404_+	hypothetical protein	NA	A0A097BY78	Enterococcus_phage	96.4	3.1e-21
BBD27801.1|1259396_1259963_+	DUF1642 domain-containing protein	NA	D2IZL3	Enterococcus_phage	49.0	1.5e-40
BBD27802.1|1259962_1260394_+	hypothetical protein	NA	C9E2N9	Enterococcus_phage	77.1	1.2e-29
BBD27803.1|1260407_1260725_+	replicase domain-containing protein	NA	NA	NA	NA	NA
BBD27804.1|1260718_1260925_+	hypothetical protein	NA	D2IZL5	Enterococcus_phage	86.4	1.6e-27
BBD27805.1|1260925_1261105_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27806.1|1261137_1261230_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27807.1|1261245_1261425_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27808.1|1261525_1262110_+	positive control factor	NA	NA	NA	NA	NA
BBD27809.1|1262544_1262748_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27810.1|1262849_1263119_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27811.1|1263163_1264432_+	adenine methyltransferase	NA	A0A2I4R670	Erysipelothrix_phage	46.4	7.6e-96
BBD27812.1|1264515_1264788_+	hypothetical protein	NA	A8ATN7	Listeria_phage	53.8	7.2e-12
BBD27813.1|1264802_1265528_+|terminase	terminase small subunit	terminase	A0A1W6JNJ8	Staphylococcus_phage	32.4	4.6e-05
BBD27814.1|1265508_1266945_+	hypothetical protein	NA	A5GYP8	Lactococcus_phage	72.1	1.9e-199
BBD27815.1|1267010_1267661_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27816.1|1267710_1269105_+	DUF1073 domain-containing protein	NA	A8ATG1	Listeria_phage	56.6	3.6e-147
BBD27817.1|1269094_1270339_+|head	minor head protein	head	A8ATG2	Listeria_phage	41.6	1.3e-52
BBD27818.1|1270331_1270496_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27819.1|1270552_1270840_+	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	68.3	1.7e-27
BBD27820.1|1270832_1271042_+	LysM domain-containing protein	NA	NA	NA	NA	NA
BBD27821.1|1271054_1272155_+	hypothetical protein	NA	A8ATG4	Listeria_phage	58.9	1.5e-87
BBD27822.1|1272157_1272628_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27823.1|1272649_1273531_+	DUF2184 domain-containing protein	NA	A8ATG6	Listeria_phage	51.8	3.9e-83
BBD27824.1|1273545_1273932_+	hypothetical protein	NA	D6PSX8	Lactobacillus_phage	35.8	4.6e-12
BBD27825.1|1273943_1274285_+	DUF4054 domain-containing protein	NA	A8ATG8	Listeria_phage	47.7	1.0e-18
BBD27826.1|1274284_1274887_+	hypothetical protein	NA	D6PSY0	Lactobacillus_phage	45.5	9.0e-39
BBD27827.1|1274886_1275261_+	hypothetical protein	NA	A8ATH0	Listeria_phage	50.8	5.6e-31
BBD27828.1|1275253_1275721_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27829.1|1275717_1276755_+	DUF3383 domain-containing protein	NA	A8ATH2	Listeria_phage	55.8	6.4e-101
BBD27830.1|1276770_1277169_+	hypothetical protein	NA	A8ATH3	Listeria_phage	54.0	6.6e-30
BBD27831.1|1277221_1277554_+	hypothetical protein	NA	A8ATH4	Listeria_phage	57.8	8.2e-26
BBD27832.1|1277737_1282903_+	peptidase M23	NA	A8ATH6	Listeria_phage	41.5	2.2e-149
BBD27833.1|1282902_1283460_+	peptidoglycan-binding protein LysM	NA	A8ATH7	Listeria_phage	43.2	2.8e-34
BBD27834.1|1283469_1283832_+	hypothetical protein	NA	A8ATH8	Listeria_phage	46.6	5.1e-29
BBD27835.1|1283832_1284663_+	hypothetical protein	NA	A8ATH9	Listeria_phage	45.4	1.7e-64
BBD27836.1|1284662_1284995_+	hypothetical protein	NA	A8ATI0	Listeria_phage	50.0	1.6e-21
BBD27837.1|1284994_1285342_+	DUF2634 domain-containing protein	NA	A0A2H4J4S8	uncultured_Caudovirales_phage	49.4	6.4e-13
BBD27838.1|1285334_1286489_+	hypothetical protein	NA	A8ATI2	Listeria_phage	54.1	5.6e-114
BBD27839.1|1286472_1287102_+	hypothetical protein	NA	A8ATI3	Listeria_phage	57.4	4.1e-58
BBD27840.1|1287120_1288764_+	hypothetical protein	NA	D2J018	Enterococcus_phage	66.3	2.6e-112
BBD27841.1|1288785_1289220_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27842.1|1289219_1289348_+	XkdX family protein	NA	NA	NA	NA	NA
BBD27843.1|1289352_1289709_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27844.1|1289705_1289903_+	hypothetical protein	NA	NA	NA	NA	NA
BBD27845.1|1289961_1291068_+	endolysin	NA	A0A139ZVY1	Enterococcus_phage	47.4	2.6e-84
>prophage 3
AP018543	Enterococcus faecalis KUB3007 DNA, complete genome	2890148	1583689	1592333	2890148		Synechococcus_phage(50.0%)	9	NA	NA
BBD28133.1|1583689_1584262_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.1	4.1e-25
BBD28134.1|1584258_1585290_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	M4QRQ6	Synechococcus_phage	45.6	1.1e-55
BBD28135.1|1585291_1586731_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.0	3.6e-49
BBD28136.1|1586706_1588926_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.9	3.3e-147
BBD28137.1|1588922_1589597_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
BBD28138.1|1589597_1589849_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
BBD28139.1|1589862_1590576_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3ELR0	Synechococcus_phage	42.5	7.4e-48
BBD28140.1|1590727_1591864_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
BBD28141.1|1591844_1592333_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.0	8.4e-19
>prophage 4
AP018543	Enterococcus faecalis KUB3007 DNA, complete genome	2890148	1732114	1784827	2890148	capsid,integrase,tail,holin,protease,portal,tRNA,terminase	Enterococcus_phage(30.0%)	66	1747519:1747537	1784883:1784901
BBD28272.1|1732114_1733884_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L424	Tupanvirus	30.3	3.0e-13
BBD28273.1|1733901_1735203_-|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	26.4	1.5e-22
BBD28274.1|1735560_1736007_-|tRNA	D-aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
BBD28275.1|1736030_1738244_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	38.0	1.3e-10
BBD28276.1|1738458_1739211_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
BBD28277.1|1739212_1740160_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
BBD28278.1|1740175_1740661_-	DUF3013 domain-containing protein	NA	NA	NA	NA	NA
BBD28279.1|1740617_1741295_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
BBD28280.1|1741423_1742701_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	49.9	1.8e-105
BBD28281.1|1743028_1743307_+	hypothetical protein	NA	NA	NA	NA	NA
BBD28282.1|1743485_1743959_+	universal stress protein	NA	NA	NA	NA	NA
BBD28283.1|1744070_1745258_-	acetate kinase	NA	NA	NA	NA	NA
BBD28284.1|1745282_1746254_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
BBD28285.1|1746418_1746772_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28286.1|1746771_1747206_-	competence protein ComG	NA	NA	NA	NA	NA
BBD28287.1|1747195_1747597_-	type II secretion system protein	NA	NA	NA	NA	NA
1747519:1747537	attL	CCACTCCCCATCTGAAATT	NA	NA	NA	NA
BBD28288.1|1747899_1748025_+	hypothetical protein	NA	NA	NA	NA	NA
BBD28289.1|1748323_1749241_-	ferrochelatase	NA	NA	NA	NA	NA
BBD28290.1|1750007_1750232_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28291.1|1750331_1750532_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.8	3.5e-24
BBD28292.1|1751367_1752627_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0S2MYF3	Enterococcus_phage	90.5	7.5e-221
BBD28293.1|1752680_1753109_-|holin	holin	holin	F0PIJ6	Enterococcus_phage	53.4	5.1e-36
BBD28294.1|1753108_1753645_-	hypothetical protein	NA	D2J074	Enterococcus_phage	90.4	1.4e-86
BBD28295.1|1753645_1754674_-	hypothetical protein	NA	D2J073	Enterococcus_phage	57.3	6.8e-103
BBD28296.1|1754684_1755809_-	hypothetical protein	NA	Q77MU2	Lactococcus_phage	45.3	8.8e-88
BBD28297.1|1755811_1756711_-|tail	phage tail family protein	tail	D2J071	Enterococcus_phage	37.4	2.9e-49
BBD28298.1|1756710_1761462_-|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	43.0	7.2e-14
BBD28299.1|1761480_1761603_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28300.1|1761683_1762031_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28301.1|1762087_1762561_-|tail	tail protein	tail	A0A1D6Z291	Staphylococcus_phage	45.1	6.0e-22
BBD28302.1|1762634_1763228_-|tail	tail protein	tail	A0A060AKE9	Staphylococcus_phage	35.1	2.6e-22
BBD28303.1|1763260_1763656_-	hypothetical protein	NA	A0A059T681	Listeria_phage	44.2	2.9e-17
BBD28304.1|1763652_1764057_-	hypothetical protein	NA	A0A2P0ZLD7	Lactobacillus_phage	44.1	9.7e-21
BBD28305.1|1764053_1764428_-	hypothetical protein	NA	A8ATA1	Listeria_phage	52.1	1.5e-28
BBD28306.1|1764414_1764720_-	hypothetical protein	NA	A0A0U4K528	Bacillus_phage	47.5	1.3e-09
BBD28307.1|1764797_1765943_-|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	56.0	7.8e-116
BBD28308.1|1765969_1766743_-|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	50.6	4.0e-55
BBD28309.1|1766714_1767890_-|portal	phage portal protein	portal	A0A2H4JBZ5	uncultured_Caudovirales_phage	40.5	8.4e-73
BBD28310.1|1768046_1768208_+	hypothetical protein	NA	NA	NA	NA	NA
BBD28311.1|1768152_1769832_-|terminase	terminase large subunit	terminase	D2XR15	Bacillus_phage	68.9	1.4e-225
BBD28312.1|1769828_1770140_-	hypothetical protein	NA	D2XR14	Bacillus_phage	49.0	1.2e-15
BBD28313.1|1770232_1770904_-	hypothetical protein	NA	A0A0B5A095	Streptococcus_phage	47.9	1.1e-16
BBD28314.1|1771022_1771337_-	HNH endonuclease	NA	A0A1S5SFB3	Streptococcus_phage	58.0	3.5e-26
BBD28315.1|1771333_1771663_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28316.1|1771735_1772482_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28317.1|1772856_1773324_-	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	27.9	3.8e-08
BBD28318.1|1773652_1773901_+	hypothetical protein	NA	NA	NA	NA	NA
BBD28319.1|1773986_1774193_-	hypothetical protein	NA	A0A1B1V001	Enterococcus_phage	96.8	1.3e-24
BBD28320.1|1774208_1774814_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28321.1|1774833_1775304_-	DUF1064 domain-containing protein	NA	A0A1I9KKZ1	Lactobacillus_phage	45.9	1.9e-31
BBD28322.1|1775282_1775456_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28323.1|1775452_1775722_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28324.1|1775860_1776700_-	DNA replication protein DnaC	NA	U5PVD6	Bacillus_phage	31.7	2.0e-20
BBD28325.1|1776711_1777467_-	DnaD domain protein	NA	B4XYS6	Lactobacillus_phage	63.6	7.6e-43
BBD28326.1|1777481_1778297_-	hypothetical protein	NA	J7KGZ1	Streptococcus_phage	49.8	2.5e-60
BBD28327.1|1778259_1779276_-	DNA recombination protein RecT	NA	A0A1S5SAA8	Streptococcus_phage	44.5	5.4e-60
BBD28328.1|1779378_1779603_-	hypothetical protein	NA	D2IZX4	Enterococcus_phage	58.9	1.5e-15
BBD28329.1|1779599_1779923_-	hypothetical protein	NA	D2IYT5	Enterococcus_phage	64.5	5.9e-29
BBD28330.1|1779962_1780178_-	hypothetical protein	NA	A0A0S2MY96	Enterococcus_phage	75.0	1.3e-16
BBD28331.1|1780184_1780496_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28332.1|1780506_1780683_-	XRE family transcriptional regulator	NA	D2IZW2	Enterococcus_phage	65.5	1.7e-14
BBD28333.1|1780994_1781327_+	transcriptional regulator	NA	A0A097QQ00	Enterococcus_phage	69.1	2.6e-35
BBD28334.1|1781343_1781688_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A097QQ08	Enterococcus_phage	73.5	2.9e-42
BBD28335.1|1781772_1782687_+	hypothetical protein	NA	NA	NA	NA	NA
BBD28336.1|1782854_1783583_+	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	48.4	2.4e-22
BBD28337.1|1783678_1784827_+|integrase	site-specific integrase	integrase	A0A0M5M609	Bacillus_phage	29.3	2.9e-38
1784883:1784901	attR	CCACTCCCCATCTGAAATT	NA	NA	NA	NA
>prophage 5
AP018543	Enterococcus faecalis KUB3007 DNA, complete genome	2890148	1848555	1934481	2890148	capsid,head,transposase,integrase,tail,holin,portal,tRNA,terminase	Enterococcus_phage(78.26%)	101	1893662:1893688	1934556:1934582
BBD28391.1|1848555_1849485_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
BBD28392.1|1849485_1850232_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	41.2	3.6e-13
BBD28393.1|1851259_1852624_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28394.1|1852620_1853586_-	glycosyltransferase	NA	A0A075B8F6	Enterobacteria_phage	43.3	2.4e-65
BBD28395.1|1853873_1854329_+|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	36.8	5.1e-18
BBD28396.1|1854455_1855406_-	epimerase	NA	A0A1V0SKV4	Klosneuvirus	36.5	4.4e-48
BBD28397.1|1856028_1857414_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28398.1|1857477_1857882_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	37.0	1.7e-17
BBD28399.1|1857878_1858766_-	glycosyl transferase	NA	NA	NA	NA	NA
BBD28400.1|1858765_1860199_-	sugar isomerase	NA	NA	NA	NA	NA
BBD28401.1|1860208_1861360_-	teichoic acid biosynthesis protein F	NA	NA	NA	NA	NA
BBD28402.1|1861356_1862355_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	43.5	5.4e-12
BBD28403.1|1862481_1865799_-	hypothetical protein	NA	D6PSS2	Lactobacillus_phage	34.1	2.9e-22
BBD28404.1|1865816_1866644_-	ammonia monooxygenase	NA	F2Y1U7	Organic_Lake_phycodnavirus	29.1	1.2e-12
BBD28405.1|1866654_1868052_-	sugar transferase	NA	NA	NA	NA	NA
BBD28406.1|1868157_1869459_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28407.1|1869487_1871458_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28408.1|1871491_1873633_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
BBD28409.1|1873644_1876788_-	glycosyl transferase family 2	NA	NA	NA	NA	NA
BBD28410.1|1876777_1877995_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.0	1.5e-08
BBD28411.1|1878007_1878802_-	ABC transporter permease	NA	NA	NA	NA	NA
BBD28412.1|1879049_1879391_+	hypothetical protein	NA	NA	NA	NA	NA
BBD28413.1|1879464_1879815_-	DUF2304 domain-containing protein	NA	NA	NA	NA	NA
BBD28414.1|1879814_1880558_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
BBD28415.1|1880592_1881435_-	dTDP-4-dehydrorhamnose reductase	NA	A0A1D8EQE2	Escherichia_phage	33.6	2.5e-26
BBD28416.1|1881527_1882556_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	41.9	1.9e-68
BBD28417.1|1882580_1883153_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	50.3	2.4e-41
BBD28418.1|1883165_1884032_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	63.9	6.1e-105
BBD28419.1|1884153_1884867_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
BBD28420.1|1884870_1885698_-	glycosyl transferase family 2	NA	NA	NA	NA	NA
BBD28421.1|1885697_1886480_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
BBD28422.1|1886607_1887744_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
BBD28423.1|1887854_1888763_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
BBD28424.1|1888778_1889543_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
BBD28425.1|1889717_1890161_+	flavodoxin	NA	NA	NA	NA	NA
BBD28426.1|1890235_1890709_-	tryptophan-rich sensory protein	NA	NA	NA	NA	NA
BBD28427.1|1890866_1891439_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
BBD28428.1|1891685_1892924_+	aminopeptidase	NA	NA	NA	NA	NA
BBD28429.1|1893182_1893563_+	PH domain-containing protein	NA	A6N235	Microbacterium_phage	33.0	2.5e-10
1893662:1893688	attL	TCAGACACATGGCGGCACTTGCTTAGT	NA	NA	NA	NA
BBD28430.1|1893896_1894145_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	100.0	1.6e-37
BBD28431.1|1894240_1895203_-	hypothetical protein	NA	A0A0S2MYH0	Enterococcus_phage	100.0	3.1e-182
BBD28432.1|1895504_1895894_+	hypothetical protein	NA	NA	NA	NA	NA
BBD28433.1|1895905_1896502_+	hypothetical protein	NA	NA	NA	NA	NA
BBD28434.1|1896603_1897863_-	1,4-beta-N-acetylmuramidase	NA	A0A0S2MYF3	Enterococcus_phage	97.6	1.5e-237
BBD28435.1|1897867_1898071_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	100.0	2.6e-30
BBD28436.1|1898067_1898295_-	hypothetical protein	NA	A0A0S2MYL7	Enterococcus_phage	98.6	1.3e-30
BBD28437.1|1898386_1900771_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	100.0	0.0e+00
BBD28438.1|1900782_1900956_-	hypothetical protein	NA	A0A0S2MYG7	Enterococcus_phage	100.0	2.3e-24
BBD28439.1|1900956_1902975_-	phage minor structural protein, region	NA	A0A0S2MYF5	Enterococcus_phage	100.0	1.4e-309
BBD28440.1|1902991_1903921_-|tail	tail protein	tail	A0A097BY64	Enterococcus_phage	99.4	8.1e-172
BBD28441.1|1903921_1907329_-	tape measure domain-containing protein	NA	A0A0S2MYN1	Enterococcus_phage	100.0	0.0e+00
BBD28442.1|1907344_1907602_-	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	100.0	1.6e-40
BBD28443.1|1907694_1908045_-	hypothetical protein	NA	A0A0S2MYH5	Enterococcus_phage	100.0	2.5e-57
BBD28444.1|1908100_1908559_-	hypothetical protein	NA	A0A0S2MYH7	Enterococcus_phage	100.0	3.7e-77
BBD28445.1|1908636_1909167_-|tail	phage major tail protein, TP901-1 family	tail	A0A0S2MYF4	Enterococcus_phage	100.0	1.5e-93
BBD28446.1|1909182_1909572_-|capsid	phage capsid protein	capsid	A0A0S2MYG3	Enterococcus_phage	99.2	6.6e-67
BBD28447.1|1909568_1909949_-	hypothetical protein	NA	A0A0S2MYE9	Enterococcus_phage	100.0	2.1e-65
BBD28448.1|1909923_1910259_-	hypothetical protein	NA	A0A0S2MYE1	Enterococcus_phage	100.0	1.1e-57
BBD28449.1|1910255_1910588_-	hypothetical protein	NA	A0A0S2MYD5	Enterococcus_phage	100.0	5.5e-54
BBD28450.1|1910661_1911594_-|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	100.0	2.3e-174
BBD28451.1|1911606_1912206_-	hypothetical protein	NA	A0A0S2MYF0	Enterococcus_phage	100.0	3.5e-75
BBD28452.1|1912328_1912661_-	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	100.0	2.1e-58
BBD28453.1|1912686_1912956_-	hypothetical protein	NA	A0A0S2MYD1	Enterococcus_phage	100.0	3.8e-45
BBD28454.1|1912956_1913895_-|head	phage head morphogenesis protein	head	A0A0S2MYG5	Enterococcus_phage	100.0	9.7e-173
BBD28455.1|1913899_1915438_-|portal	phage portal protein	portal	A0A1B1V003	Enterococcus_phage	99.8	1.9e-287
BBD28456.1|1915455_1916754_-|terminase	PBSX family phage terminase large subunit	terminase	D2J001	Enterococcus_phage	92.1	4.9e-231
BBD28457.1|1916746_1917541_-|terminase	small subunit of terminase	terminase	D2J000	Enterococcus_phage	91.8	5.6e-121
BBD28458.1|1917593_1917818_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28459.1|1919398_1919815_-	autolysin	NA	D2IZL7	Enterococcus_phage	99.3	1.7e-68
BBD28460.1|1920237_1920408_-	hypothetical protein	NA	D2IZL5	Enterococcus_phage	85.7	8.2e-22
BBD28461.1|1920407_1920569_-	hypothetical protein	NA	D2IZL4	Enterococcus_phage	92.5	5.9e-22
BBD28462.1|1920569_1921088_-	hypothetical protein	NA	D2IZZ0	Enterococcus_phage	37.5	9.9e-18
BBD28463.1|1921063_1921303_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28464.1|1921314_1921566_-	hypothetical protein	NA	A0A0Y0C5A8	Bacillus_phage	39.0	7.9e-05
BBD28465.1|1921562_1921886_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28466.1|1921891_1922128_-	hypothetical protein	NA	A0A096XT77	Enterococcus_phage	43.6	2.2e-09
BBD28467.1|1922142_1922367_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28468.1|1922366_1922714_-	hypothetical protein	NA	D2IZY9	Enterococcus_phage	61.2	4.6e-27
BBD28469.1|1922750_1922930_-	hypothetical protein	NA	D2IZY7	Enterococcus_phage	96.6	9.8e-26
BBD28470.1|1923222_1923606_-	class I SAM-dependent methyltransferase	NA	D2IYU6	Enterococcus_phage	96.1	1.1e-71
BBD28471.1|1923659_1923860_-	hypothetical protein	NA	A0A1B1V001	Enterococcus_phage	90.0	7.4e-22
BBD28472.1|1923944_1924214_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28473.1|1924225_1924753_-	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	58.3	9.0e-43
BBD28474.1|1924742_1925051_-	hypothetical protein	NA	D2IZR4	Enterococcus_phage	90.9	1.6e-44
BBD28475.1|1925050_1926064_-	hypothetical protein	NA	A0A0S2MYA8	Enterococcus_phage	99.3	1.7e-159
BBD28476.1|1926082_1926763_-	hypothetical protein	NA	A0A0S2MYA3	Enterococcus_phage	100.0	4.8e-129
BBD28477.1|1926759_1927740_-	DUF1351 domain-containing protein	NA	A0A0S2MYB3	Enterococcus_phage	99.7	1.5e-123
BBD28478.1|1927682_1928360_-	single-stranded DNA-binding protein	NA	A0A0S2MYH3	Enterococcus_phage	100.0	3.3e-122
BBD28479.1|1928360_1928597_-	hypothetical protein	NA	A0A0S2MYD6	Enterococcus_phage	100.0	6.2e-36
BBD28480.1|1928653_1928809_-	hypothetical protein	NA	A0A0S2MYB0	Enterococcus_phage	100.0	8.2e-21
BBD28481.1|1928809_1928920_-	hypothetical protein	NA	C9E2M6	Enterococcus_phage	94.1	2.3e-09
BBD28482.1|1928916_1929090_-	hypothetical protein	NA	A0A0S2MY96	Enterococcus_phage	100.0	4.0e-24
BBD28483.1|1929111_1929360_-	hypothetical protein	NA	A0A0S2MYC6	Enterococcus_phage	100.0	2.1e-42
BBD28484.1|1929375_1930095_-	oxidoreductase	NA	A0A0S2MYI3	Enterococcus_phage	100.0	2.3e-134
BBD28485.1|1930176_1930410_-	DUF739 domain-containing protein	NA	A0A0S2MYC3	Enterococcus_phage	100.0	7.8e-39
BBD28486.1|1930568_1931141_+	transcriptional regulator	NA	C9E2M1	Enterococcus_phage	98.9	7.4e-99
BBD28487.1|1931157_1931631_+	hypothetical protein	NA	A0A0S2MYA6	Enterococcus_phage	100.0	5.4e-87
BBD28488.1|1931719_1932421_+	hypothetical protein	NA	A0A0S2MYA9	Enterococcus_phage	100.0	5.5e-96
BBD28489.1|1932444_1932645_+	hypothetical protein	NA	A0A0S2MYA2	Enterococcus_phage	100.0	7.4e-30
BBD28490.1|1932705_1933278_+	hypothetical protein	NA	A0A1B1UZZ9	Enterococcus_phage	100.0	9.4e-86
BBD28491.1|1933344_1934481_+|integrase	site-specific integrase	integrase	A0A0S2MYI6	Enterococcus_phage	100.0	2.9e-211
1934556:1934582	attR	TCAGACACATGGCGGCACTTGCTTAGT	NA	NA	NA	NA
>prophage 6
AP018543	Enterococcus faecalis KUB3007 DNA, complete genome	2890148	2340085	2349825	2890148		Streptococcus_phage(57.14%)	11	NA	NA
BBD28859.1|2340085_2342269_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.8	3.1e-286
BBD28860.1|2342301_2342898_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.4	6.0e-51
BBD28861.1|2342942_2344061_-	DNA polymerase IV	NA	NA	NA	NA	NA
BBD28862.1|2344186_2344945_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
BBD28863.1|2344928_2345591_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.1	6.7e-19
BBD28864.1|2345605_2346478_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	57.6	6.2e-81
BBD28865.1|2346589_2346937_-	initiation-control protein YabA	NA	M1PFV3	Streptococcus_phage	36.7	8.1e-16
BBD28866.1|2346929_2347769_-	signal peptidase II	NA	NA	NA	NA	NA
BBD28867.1|2347885_2348836_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.0	6.2e-34
BBD28868.1|2348837_2349167_-	hypothetical protein	NA	NA	NA	NA	NA
BBD28869.1|2349186_2349825_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	53.8	2.1e-54
>prophage 7
AP018543	Enterococcus faecalis KUB3007 DNA, complete genome	2890148	2749008	2814355	2890148	holin,protease,transposase,integrase	Streptococcus_phage(21.43%)	56	2741525:2741542	2817358:2817375
2741525:2741542	attL	AATTTTAGGAATTGTTGC	NA	NA	NA	NA
BBD29250.1|2749008_2749584_-|integrase	integrase	integrase	E2ELN7	Clostridium_phage	39.7	1.7e-26
BBD29251.1|2749792_2751001_+|integrase	site-specific integrase	integrase	A0A172LN96	Lactococcus_phage	34.5	2.8e-55
BBD29252.1|2751362_2751755_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
BBD29253.1|2751768_2752314_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
BBD29254.1|2752433_2752901_-	DNA starvation/stationary phase protection protein	NA	C1KFH1	Lactobacillus_virus	25.9	1.0e-05
BBD29255.1|2753028_2753748_-	lipoprotein	NA	NA	NA	NA	NA
BBD29256.1|2753831_2755352_-	gluconate kinase	NA	NA	NA	NA	NA
BBD29257.1|2755460_2756153_+	prepilin peptidase	NA	NA	NA	NA	NA
BBD29258.1|2756333_2757638_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.1	1.2e-43
BBD29259.1|2757735_2761389_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.8	1.4e-65
BBD29260.1|2761555_2765170_-	DNA-directed RNA polymerase, beta subunit	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.5	2.0e-48
BBD29261.1|2765391_2765529_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29262.1|2765540_2765882_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SAB3	Streptococcus_phage	42.5	4.2e-17
BBD29263.1|2765881_2766112_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29264.1|2766285_2766501_-	DNA-binding protein	NA	NA	NA	NA	NA
BBD29265.1|2766639_2767632_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
BBD29266.1|2767698_2768331_-	RloB domain-containing protein	NA	NA	NA	NA	NA
BBD29267.1|2768339_2769635_-	abortive infection protein	NA	NA	NA	NA	NA
BBD29268.1|2769660_2769795_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29269.1|2770096_2771713_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
BBD29270.1|2771982_2772126_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
BBD29271.1|2772320_2775320_-	WxL domain-containing protein	NA	NA	NA	NA	NA
BBD29272.1|2775651_2779581_-	WxL domain-containing protein	NA	NA	NA	NA	NA
BBD29273.1|2779567_2779930_-	cell wall surface anchor protein	NA	NA	NA	NA	NA
BBD29274.1|2780316_2781264_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
BBD29275.1|2781277_2782345_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
BBD29276.1|2782599_2783529_-	FMN-binding domain-containing protein	NA	NA	NA	NA	NA
BBD29277.1|2783806_2785753_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
BBD29278.1|2785970_2786393_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29279.1|2786404_2786962_+	heptaprenyl diphosphate synthase subunit I	NA	NA	NA	NA	NA
BBD29280.1|2786999_2787986_+	geranylgeranyl pyrophosphate synthase	NA	NA	NA	NA	NA
BBD29281.1|2788306_2788537_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
BBD29282.1|2788526_2788892_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SEX8	Streptococcus_phage	42.5	6.1e-14
BBD29283.1|2789379_2791458_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29284.1|2791880_2792672_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.8	3.1e-23
BBD29285.1|2792664_2793258_-	non-canonical purine NTP pyrophosphatase	NA	A0A1K0ISQ7	Cassava_brown_streak_virus	34.3	1.5e-09
BBD29286.1|2793261_2793822_-	GTP cyclohydrolase I FolE	NA	S4VV34	Pandoravirus	49.1	2.0e-32
BBD29287.1|2793824_2794310_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
BBD29288.1|2794310_2794673_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
BBD29289.1|2795259_2796081_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29290.1|2796084_2796732_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29291.1|2796728_2797436_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29292.1|2797799_2797904_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29293.1|2798199_2799549_-	glutathione-disulfide reductase	NA	NA	NA	NA	NA
BBD29294.1|2799635_2799929_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29295.1|2799913_2800039_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29296.1|2800061_2801201_-	transcriptional regulator	NA	B6SBZ6	Clostridium_virus	33.2	5.1e-43
BBD29297.1|2801178_2801844_-	conserved hypothetical protein	NA	NA	NA	NA	NA
BBD29298.1|2802106_2803660_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
BBD29299.1|2803660_2804755_-	DUF917 domain-containing protein	NA	NA	NA	NA	NA
BBD29300.1|2804774_2806043_-	cytosine permease	NA	NA	NA	NA	NA
BBD29301.1|2806729_2808292_-	PucR family transcriptional regulator	NA	NA	NA	NA	NA
BBD29302.1|2808315_2809563_-|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	34.2	8.7e-44
BBD29303.1|2809590_2810511_-	U32 family peptidase	NA	NA	NA	NA	NA
BBD29304.1|2810691_2811726_-	FUSC family protein	NA	NA	NA	NA	NA
BBD29305.1|2811859_2814355_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A0A8J958	Klebsiella_phage	39.5	1.9e-127
2817358:2817375	attR	GCAACAATTCCTAAAATT	NA	NA	NA	NA
>prophage 8
AP018543	Enterococcus faecalis KUB3007 DNA, complete genome	2890148	2855923	2873446	2890148	transposase	Streptococcus_phage(100.0%)	17	NA	NA
BBD29333.1|2855923_2856238_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
BBD29334.1|2856256_2856640_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	2.3e-64
BBD29335.1|2856668_2858054_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
BBD29336.1|2858231_2859437_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
BBD29337.1|2859479_2859701_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
BBD29338.1|2859817_2860315_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
BBD29339.1|2860289_2860796_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
BBD29340.1|2860779_2863227_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
BBD29341.1|2863229_2865407_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
BBD29342.1|2865403_2866405_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
BBD29343.1|2866401_2867334_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
BBD29344.1|2867710_2869630_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
BBD29345.1|2869975_2870329_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
BBD29346.1|2870833_2871256_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
BBD29347.1|2871252_2871483_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
BBD29348.1|2871943_2872147_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
BBD29349.1|2872228_2873446_+|transposase	transposase	transposase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
>prophage 1
AP018544	Enterococcus faecalis plasmid pKUB3007-1 KUB3007 DNA, complete genome	106370	1762	53490	106370	transposase,protease	Streptococcus_phage(47.06%)	55	NA	NA
BBD29373.1|1762_2431_-|protease	putative protease	protease	NA	NA	NA	NA
BBD29374.1|2466_2784_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29375.1|3628_3928_+	replication control protein PrgN	NA	NA	NA	NA	NA
BBD29376.1|4712_5255_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29377.1|5264_6197_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	32.0	4.2e-35
BBD29378.1|6778_7795_+	replication protein RepA	NA	NA	NA	NA	NA
BBD29379.1|7940_9101_+	TraB family protein	NA	NA	NA	NA	NA
BBD29380.1|9155_10001_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
BBD29381.1|10828_11209_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29382.1|11208_11481_+	pheromone-responsive regulatory protein S	NA	NA	NA	NA	NA
BBD29383.1|11793_12087_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29384.1|12049_14773_+	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA	NA
BBD29385.1|14916_15252_+	hypothetical protein	NA	F0PIH7	Enterococcus_phage	69.4	2.3e-39
BBD29386.1|15541_19459_+	aggregation substance	NA	NA	NA	NA	NA
BBD29387.1|19520_19877_+	PrgU-like protein	NA	NA	NA	NA	NA
BBD29388.1|19898_20285_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29389.1|20352_20613_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29390.1|20623_21502_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29391.1|21521_21866_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29392.1|21914_22364_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
BBD29393.1|22389_23661_+	CHAP domain-containing protein	NA	A0A1P8CMP9	Staphylococcus_phage	36.2	7.6e-11
BBD29394.1|23663_24281_+	conserved hypothetical protein	NA	NA	NA	NA	NA
BBD29395.1|24312_24681_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29396.1|24777_26061_-|transposase	putative transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.8	5.8e-43
BBD29397.1|26229_26529_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29398.1|26521_27556_+	conjugal transfer protein	NA	NA	NA	NA	NA
BBD29399.1|27545_27821_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29400.1|27820_28210_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29401.1|28241_28724_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29402.1|28816_29275_+	single-stranded DNA-binding protein	NA	Q9B008	Lactococcus_phage	59.2	6.6e-42
BBD29403.1|29307_31872_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29404.1|31828_32224_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29405.1|32241_34587_+	MAEBL family membrane protein	NA	NA	NA	NA	NA
BBD29406.1|34573_36832_+	putative type IV secretion-system coupling protein	NA	NA	NA	NA	NA
BBD29407.1|37411_38140_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
BBD29408.1|38145_38634_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29409.1|38859_39234_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29410.1|39240_39507_+	hypothetical protein	NA	A0A1W6JN36	Lactococcus_phage	68.2	2.0e-22
BBD29411.1|39668_40445_+	hypothetical protein	NA	A8ATL9	Listeria_phage	44.6	2.5e-17
BBD29412.1|40441_41776_+	PcfJ protein	NA	A8ATM0	Listeria_phage	42.0	1.9e-97
BBD29413.1|41915_42392_+	single-stranded DNA-binding protein	NA	A0A1S5PRS2	Streptococcus_phage	49.5	8.8e-21
BBD29414.1|43164_43851_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
BBD29415.1|43886_44216_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29416.1|44233_44443_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29417.1|44475_44577_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29418.1|44945_45284_-|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	94.5	4.6e-56
BBD29419.1|45625_45844_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
BBD29420.1|45833_46448_+	XRE family transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	46.8	5.5e-07
BBD29421.1|46574_47540_+	bacitracin ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	47.6	2.6e-43
BBD29422.1|47580_48282_+	bacitracin transport permease BCRB	NA	NA	NA	NA	NA
BBD29423.1|48281_49112_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
BBD29424.1|49309_49996_-|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	90.7	2.1e-116
BBD29425.1|50652_51390_+	23S rRNA methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	1.2e-133
BBD29426.1|51402_52188_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	5.5e-153
BBD29427.1|52803_53490_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
>prophage 2
AP018544	Enterococcus faecalis plasmid pKUB3007-1 KUB3007 DNA, complete genome	106370	59007	103624	106370	integrase,transposase	Streptococcus_phage(50.0%)	46	84640:84654	104498:104512
BBD29432.1|59007_59904_+	partitioning protein ParA	NA	A0A1X9I765	Streptococcus_phage	99.3	1.9e-154
BBD29433.1|59995_60211_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	97.1	4.2e-31
BBD29434.1|60228_60501_+	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
BBD29435.1|60502_61366_+	toxin zeta	NA	NA	NA	NA	NA
BBD29436.1|61487_61787_+	chaperone protein DnaJ	NA	NA	NA	NA	NA
BBD29437.1|62069_62666_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
BBD29438.1|62796_63858_+	ABC-type transporter ATP-binding protein EcsA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	3.6e-22
BBD29439.1|63881_65495_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29440.1|65566_66091_-|integrase	integrase core domain protein	integrase	W5R8L2	Staphylococcus_phage	44.4	8.1e-36
BBD29441.1|66132_66819_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
BBD29442.1|67132_67738_+	resolvase family site-specific recombinase	NA	M9Q1K0	Clostridium_phage	31.9	5.7e-17
BBD29443.1|67734_69258_-	putative RNA helicase	NA	NA	NA	NA	NA
BBD29444.1|69471_70650_+|transposase	ISEf1, transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
BBD29445.1|70801_71500_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	7.1e-136
BBD29446.1|71496_72039_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
BBD29447.1|72140_72926_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	5.5e-153
BBD29448.1|73675_74413_+	23S rRNA methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
BBD29449.1|74357_74549_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	95.2	1.6e-26
BBD29450.1|74717_75581_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	A0A1X9I6F2	Streptococcus_phage	100.0	8.7e-168
BBD29451.1|75624_76152_+	adenine phosphoribosyltransferase	NA	A0A1X9I6E2	Streptococcus_phage	100.0	1.9e-93
BBD29452.1|76283_77093_+	streptomycin 3''-adenylyltransferase	NA	NA	NA	NA	NA
BBD29453.1|77310_77562_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29454.1|77612_78071_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29455.1|78132_78717_+	hypothetical protein	NA	A0A2K5B2B4	Erysipelothrix_phage	31.1	4.1e-20
BBD29456.1|79159_80644_+	putative ABC transporter ATP-binding protein YheS	NA	A0A2H4UUX5	Bodo_saltans_virus	26.0	2.6e-26
BBD29457.1|80697_81501_+	lincosamide nucleotidyltransferase	NA	NA	NA	NA	NA
BBD29458.1|81949_83029_-|transposase	putative transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.5	1.6e-38
BBD29459.1|83528_83753_+	helix-turn-helix domain protein	NA	NA	NA	NA	NA
BBD29460.1|83767_84637_+	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	92.0	1.2e-153
BBD29461.1|84617_85352_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
84640:84654	attL	ATAATATATTTTTTC	NA	NA	NA	NA
BBD29462.1|85384_85906_+	N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	4.9e-73
BBD29463.1|85906_86290_+	hypothetical protein	NA	A0A1X9I6C2	Streptococcus_phage	98.4	1.8e-69
BBD29464.1|86267_87338_+	hypothetical protein	NA	A0A0N9SKF6	Staphylococcus_phage	99.7	5.8e-206
BBD29465.1|87395_87512_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29466.1|87625_88804_+|transposase	ISEf1, transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
BBD29467.1|89328_89742_-	toxin Doc	NA	A0A0N9SKD8	Staphylococcus_phage	41.5	6.7e-17
BBD29468.1|89738_89975_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29469.1|90425_93542_-	type III restriction enzyme, res subunit	NA	A0A2K5B256	Erysipelothrix_phage	34.3	2.0e-129
BBD29470.1|93576_95346_-	putative methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	40.7	3.4e-102
BBD29471.1|95348_95906_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29472.1|96018_97302_-|transposase	putative transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.8	5.8e-43
BBD29473.1|97446_100635_-	ATP-dependent RNA helicase RhlE	NA	A0A2K5B2B9	Erysipelothrix_phage	41.1	9.8e-217
BBD29474.1|100652_100763_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29475.1|101428_102019_-	recombinase	NA	D2XR58	Bacillus_phage	35.1	7.0e-28
BBD29476.1|102476_103250_-|integrase	integrase core domain protein	integrase	A0A1P8CWQ3	Bacillus_phage	55.9	1.0e-71
BBD29477.1|103360_103624_-|transposase	putative transposase	transposase	A0A1P8CWP5	Bacillus_phage	45.2	3.1e-12
104498:104512	attR	ATAATATATTTTTTC	NA	NA	NA	NA
>prophage 1
AP018546	Enterococcus faecalis plasmid pKUB3007-3 KUB3007 DNA, complete genome	59322	2066	58390	59322	transposase	Streptococcus_phage(68.97%)	63	NA	NA
BBD29558.1|2066_2684_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	36.1	4.5e-17
BBD29559.1|2683_4828_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	96.9	2.5e-264
BBD29560.1|4916_5813_+	partitioning protein ParA	NA	A0A1X9I765	Streptococcus_phage	98.2	8.2e-153
BBD29561.1|5904_6120_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	97.1	4.2e-31
BBD29562.1|6136_6409_+	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
BBD29563.1|6410_7274_+	toxin zeta	NA	NA	NA	NA	NA
BBD29564.1|7447_8812_-|transposase	putative transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	43.5	7.2e-100
BBD29565.1|9009_9429_-	metallothiol transferase FosB	NA	NA	NA	NA	NA
BBD29566.1|9726_9855_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29567.1|9880_10021_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	93.0	8.0e-15
BBD29568.1|9965_10703_-	23S rRNA methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
BBD29569.1|11605_11722_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29570.1|11694_12012_+	hypothetical protein	NA	A0A1W6JN36	Lactococcus_phage	79.4	3.5e-26
BBD29571.1|12536_13043_+	chaperone protein DnaJ	NA	NA	NA	NA	NA
BBD29572.1|13147_13381_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29573.1|13403_13661_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29574.1|13663_13963_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29575.1|14275_16240_+	Mobilization protein A	NA	NA	NA	NA	NA
BBD29576.1|16263_16596_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29577.1|16614_16998_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29578.1|17080_17644_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29579.1|17654_19616_+	AAA-like domain protein	NA	NA	NA	NA	NA
BBD29580.1|19629_20982_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29581.1|21003_22113_+	N-acetylmuramoyl-L-alanine amidase domain-containing protein precursor	NA	A0A1S5SEZ8	Streptococcus_phage	43.1	4.4e-39
BBD29582.1|22125_22677_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29583.1|22681_23113_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29584.1|23105_24761_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
BBD29585.1|24778_25702_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29586.1|25701_26634_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29587.1|26650_27622_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29588.1|27650_28019_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29589.1|28078_28828_+	cell wall surface anchor protein	NA	NA	NA	NA	NA
BBD29590.1|29255_30449_-|transposase	putative transposase	transposase	A0A1S5SEW7	Streptococcus_phage	64.1	2.1e-143
BBD29591.1|30527_30734_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	87.3	1.1e-25
BBD29592.1|30726_31869_-	hypothetical protein	NA	A0A1S5SEX3	Streptococcus_phage	36.2	4.8e-65
BBD29593.1|32377_33013_+	HTH-type transcriptional regulator SinR	NA	NA	NA	NA	NA
BBD29594.1|33503_34436_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	9.0e-171
BBD29595.1|34812_36732_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
BBD29596.1|37077_37431_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
BBD29597.1|37790_37979_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29598.1|37998_38355_+	RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	60.3	3.5e-30
BBD29599.1|38956_39514_-	zeta toxin	NA	NA	NA	NA	NA
BBD29600.1|39704_40487_-	tetracycline resistance protein, class B	NA	NA	NA	NA	NA
BBD29601.1|40528_41215_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	97.3	3.6e-124
BBD29602.1|41517_41856_+	morphine 6-dehydrogenase	NA	NA	NA	NA	NA
BBD29603.1|42085_44113_+	beta-lactam-inducible penicillin-binding protein	NA	NA	NA	NA	NA
BBD29604.1|44739_45426_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
BBD29605.1|45675_46071_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29606.1|46395_47013_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
BBD29607.1|47053_47353_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29608.1|47386_47584_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29609.1|47886_48219_+	hypothetical protein	NA	NA	NA	NA	NA
BBD29610.1|48251_48536_-	hypothetical protein	NA	NA	NA	NA	NA
BBD29611.1|48528_49419_-	hypothetical protein	NA	F0PIG8	Enterococcus_phage	31.7	1.5e-29
BBD29612.1|50107_51628_+	repS protein	NA	NA	NA	NA	NA
BBD29613.1|51921_52608_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	5.0e-126
BBD29614.1|52692_53373_+|transposase	IS256 family transposase IS256	transposase	A0A0N9S006	Staphylococcus_phage	100.0	8.8e-75
BBD29615.1|53502_54942_-	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A0N9SKF6	Staphylococcus_phage	99.6	7.2e-284
BBD29616.1|54942_55326_-	N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	98.4	3.1e-69
BBD29617.1|55315_56452_-	hypothetical protein	NA	A0A0N9SKF6	Staphylococcus_phage	100.0	3.6e-222
BBD29618.1|56608_57295_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	4.5e-127
BBD29619.1|57516_58254_+	23S rRNA methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	1.6e-133
BBD29620.1|58198_58390_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	93.7	1.8e-25
