assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003966445.1_ASM396644v1	AP018802	Escherichia coli E2863 DNA, complete genome	1	3400252-3400524	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14i	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14i	NA,NA	NA|254aa|up_9|AP018802.1_3392064_3392826_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|AP018802.1_3392806_3393856_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|AP018802.1_3393852_3394332_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|AP018802.1_3394331_3395042_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|AP018802.1_3395060_3395372_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|AP018802.1_3395565_3395889_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|AP018802.1_3395938_3396544_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|AP018802.1_3396543_3397971_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|AP018802.1_3397972_3398881_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|AP018802.1_3399132_3400170_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|AP018802.1_3400620_3400914_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|AP018802.1_3400913_3401834_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|AP018802.1_3401830_3402481_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|AP018802.1_3402462_3403209_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|AP018802.1_3403219_3404275_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|AP018802.1_3404286_3404826_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|AP018802.1_3404822_3406385_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|AP018802.1_3406482_3409182_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|AP018802.1_3409375_3409528_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|AP018802.1_3409792_3410527_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_003966445.1_ASM396644v1	AP018802	Escherichia coli E2863 DNA, complete genome	2	3426226-3426620	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14i	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACA	29,27,28	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	Unclear	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14i	NA,NA|47aa|down_1|AP018802.1_3427769_3427910_+	NA|424aa|up_9|AP018802.1_3414870_3416142_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|AP018802.1_3416132_3416393_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|AP018802.1_3416409_3416985_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|AP018802.1_3417132_3417993_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|AP018802.1_3417989_3418769_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|AP018802.1_3418746_3420156_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|AP018802.1_3420177_3421632_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|AP018802.1_3421701_3422487_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|AP018802.1_3422805_3424083_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|AP018802.1_3424108_3425587_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|AP018802.1_3426959_3427631_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|AP018802.1_3427769_3427910_+	NA	NA|291aa|down_2|AP018802.1_3427923_3428796_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|AP018802.1_3428855_3430154_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|AP018802.1_3430241_3431879_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|AP018802.1_3432106_3432898_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|AP018802.1_3432968_3433304_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|AP018802.1_3433303_3433552_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|AP018802.1_3433629_3435864_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|161aa|down_9|AP018802.1_3435911_3436394_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCA_003966445.1_ASM396644v1	AP018807	Escherichia coli E2863 plasmid pE2863-5 DNA, complete genome	1	30623-30731	1	CRISPRCasFinder	no			Orphan	ACCATAAATCTGTCCCTCTTTGACCATAAAT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14i	NA|105aa|up_7|AP018807.1_24901_25216_-,NA|78aa|up_3|AP018807.1_27782_28016_+,NA|108aa|down_0|AP018807.1_31980_32304_+,NA|75aa|down_1|AP018807.1_32344_32569_+,NA|89aa|down_3|AP018807.1_32939_33206_+,NA|110aa|down_5|AP018807.1_33877_34207_+,NA|93aa|down_6|AP018807.1_34264_34543_+,NA|45aa|down_7|AP018807.1_34626_34761_+,NA|235aa|down_9|AP018807.1_35659_36364_-	NA|791aa|up_9|AP018807.1_22148_24521_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|107aa|up_8|AP018807.1_24523_24844_-	COG3702, VirB3, Type IV secretory pathway, VirB3 components [Intracellular trafficking and secretion]	NA|105aa|up_7|AP018807.1_24901_25216_-	NA	NA|204aa|up_6|AP018807.1_25187_25799_-	cd16892, LT_VirB1-like, VirB1-like subfamily	NA|332aa|up_5|AP018807.1_26131_27127_+	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|214aa|up_4|AP018807.1_27128_27770_+	pfam07996, T4SS, Type IV secretion system proteins	NA|78aa|up_3|AP018807.1_27782_28016_+	NA	NA|96aa|up_2|AP018807.1_28056_28344_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|113aa|up_1|AP018807.1_28542_28881_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|335aa|up_0|AP018807.1_29298_30303_-	pfam01051, Rep_3, Initiator Replication protein	NA|108aa|down_0|AP018807.1_31980_32304_+	NA	NA|75aa|down_1|AP018807.1_32344_32569_+	NA	NA|75aa|down_2|AP018807.1_32664_32889_+	cd04702, ASRGL1_like, Metazoan L-Asparaginase type 2	NA|89aa|down_3|AP018807.1_32939_33206_+	NA	NA|86aa|down_4|AP018807.1_33180_33438_+	pfam15731, MqsA_antitoxin, Antitoxin component of bacterial toxin-antitoxin system, MqsA	NA|110aa|down_5|AP018807.1_33877_34207_+	NA	NA|93aa|down_6|AP018807.1_34264_34543_+	NA	NA|45aa|down_7|AP018807.1_34626_34761_+	NA	NA|146aa|down_8|AP018807.1_35192_35630_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|235aa|down_9|AP018807.1_35659_36364_-	NA
