assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003966625.1_ASM396662v1	AP018587	Staphylococcus caprae JMUB898 DNA, complete genome	2	451288-451377	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	AGAATTTCTACAGATTAAAATCTTAG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|58aa|up_8|AP018587.1_445578_445752_+,NA|164aa|down_6|AP018587.1_458880_459372_+	NA|315aa|up_9|AP018587.1_444565_445510_-	pfam04909, Amidohydro_2, Amidohydrolase	NA|58aa|up_8|AP018587.1_445578_445752_+	NA	NA|207aa|up_7|AP018587.1_445699_446320_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|279aa|up_6|AP018587.1_446354_447191_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|335aa|up_5|AP018587.1_447216_448221_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|235aa|up_4|AP018587.1_448331_449036_-	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|181aa|up_3|AP018587.1_449050_449593_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|100aa|up_2|AP018587.1_449723_450023_+	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_1|AP018587.1_450035_450854_+	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|126aa|up_0|AP018587.1_450890_451268_+	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|77aa|down_0|AP018587.1_451446_451677_-	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|189aa|down_1|AP018587.1_451896_452463_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|466aa|down_2|AP018587.1_452713_454111_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|353aa|down_3|AP018587.1_454568_455627_+	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|469aa|down_4|AP018587.1_456130_457537_+	TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase	NA|235aa|down_5|AP018587.1_457985_458690_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|164aa|down_6|AP018587.1_458880_459372_+	NA	NA|497aa|down_7|AP018587.1_459371_460862_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|374aa|down_8|AP018587.1_460868_461990_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|288aa|down_9|AP018587.1_462027_462891_+	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]
GCA_003966625.1_ASM396662v1	AP018587	Staphylococcus caprae JMUB898 DNA, complete genome	3	469706-469848	2	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TTTCTTGAGGAAATCCTCTGTGTTGGGGCCCCG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|53aa|up_2|AP018587.1_468618_468777_+,NA|69aa|up_1|AP018587.1_468823_469030_-,NA|62aa|down_5|AP018587.1_476159_476345_+	NA|497aa|up_9|AP018587.1_459371_460862_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|374aa|up_8|AP018587.1_460868_461990_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|288aa|up_7|AP018587.1_462027_462891_+	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|502aa|up_6|AP018587.1_462903_464409_+	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|387aa|up_5|AP018587.1_464632_465793_+	PRK08068, PRK08068, transaminase; Reviewed	NA|69aa|up_4|AP018587.1_465870_466077_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|796aa|up_3|AP018587.1_466166_468554_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|53aa|up_2|AP018587.1_468618_468777_+	NA	NA|69aa|up_1|AP018587.1_468823_469030_-	NA	NA|132aa|up_0|AP018587.1_469207_469603_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|290aa|down_0|AP018587.1_469907_470777_+	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|187aa|down_1|AP018587.1_470865_471426_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|836aa|down_2|AP018587.1_471589_474097_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|314aa|down_3|AP018587.1_474148_475090_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|242aa|down_4|AP018587.1_475285_476011_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|62aa|down_5|AP018587.1_476159_476345_+	NA	NA|515aa|down_6|AP018587.1_476674_478219_+	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|184aa|down_7|AP018587.1_478319_478871_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|76aa|down_8|AP018587.1_479084_479312_+	pfam04023, FeoA, FeoA domain	NA|665aa|down_9|AP018587.1_479317_481312_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]
GCA_003966625.1_ASM396662v1	AP018587	Staphylococcus caprae JMUB898 DNA, complete genome	4	638489-638571	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	AAACTTTAGTTTTTAGATTCGCTTA	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|226aa|up_9|AP018587.1_630060_630738_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|154aa|up_8|AP018587.1_630748_631210_+	pfam13185, GAF_2, GAF domain	NA|345aa|up_7|AP018587.1_631219_632254_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|219aa|up_6|AP018587.1_632273_632930_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|392aa|up_5|AP018587.1_633284_634460_+	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|139aa|up_4|AP018587.1_634563_634980_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|149aa|up_3|AP018587.1_635269_635716_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|210aa|up_2|AP018587.1_635880_636510_+	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN	NA|122aa|up_1|AP018587.1_636630_636996_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|427aa|up_0|AP018587.1_637175_638456_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|117aa|down_0|AP018587.1_638640_638991_-	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|141aa|down_1|AP018587.1_639169_639592_-	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|678aa|down_2|AP018587.1_639662_641696_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|126aa|down_3|AP018587.1_642778_643156_-	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|316aa|down_4|AP018587.1_643399_644347_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|204aa|down_5|AP018587.1_644416_645028_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|426aa|down_6|AP018587.1_645190_646468_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|261aa|down_7|AP018587.1_646655_647438_+	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs	NA|140aa|down_8|AP018587.1_647624_648044_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|453aa|down_9|AP018587.1_648181_649540_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA
GCA_003966625.1_ASM396662v1	AP018587	Staphylococcus caprae JMUB898 DNA, complete genome	5	1086660-1086782	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	ATTAAGCGGGAGTAGTTCAACTCTTAGAACAC	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|54aa|up_0|AP018587.1_1083744_1083906_+,NA|246aa|down_0|AP018587.1_1087617_1088355_-,NA|60aa|down_8|AP018587.1_1095169_1095349_+,NA|133aa|down_9|AP018587.1_1095584_1095983_+	NA|326aa|up_9|AP018587.1_1069107_1070085_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|348aa|up_8|AP018587.1_1070237_1071281_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|181aa|up_7|AP018587.1_1071384_1071927_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|579aa|up_6|AP018587.1_1072209_1073946_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|365aa|up_5|AP018587.1_1074044_1075139_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|431aa|up_4|AP018587.1_1075622_1076915_-	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|152aa|up_3|AP018587.1_1076995_1077451_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|317aa|up_2|AP018587.1_1077456_1078407_+	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|up_1|AP018587.1_1078502_1078958_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|54aa|up_0|AP018587.1_1083744_1083906_+	NA	NA|246aa|down_0|AP018587.1_1087617_1088355_-	NA	NA|107aa|down_1|AP018587.1_1088566_1088887_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|353aa|down_2|AP018587.1_1089232_1090291_+	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|486aa|down_3|AP018587.1_1090433_1091891_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|241aa|down_4|AP018587.1_1091883_1092606_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|376aa|down_5|AP018587.1_1092765_1093893_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|157aa|down_6|AP018587.1_1093895_1094366_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|200aa|down_7|AP018587.1_1094545_1095145_+	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|60aa|down_8|AP018587.1_1095169_1095349_+	NA	NA|133aa|down_9|AP018587.1_1095584_1095983_+	NA
GCA_003966625.1_ASM396662v1	AP018587	Staphylococcus caprae JMUB898 DNA, complete genome	6	1668982-1669075	5	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	GCATAAGAGCCACTAACCGATGAATCGGTAAG	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|57aa|up_9|AP018587.1_1660844_1661015_-,NA|72aa|up_0|AP018587.1_1668562_1668778_+,NA	NA|57aa|up_9|AP018587.1_1660844_1661015_-	NA	NA|165aa|up_8|AP018587.1_1661054_1661549_-	TIGR02359, conserved_hypothetical_protein, energy coupling factor transporter S component ThiW	NA|122aa|up_7|AP018587.1_1661572_1661938_-	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|515aa|up_6|AP018587.1_1661939_1663484_-	PRK14327, PRK14327, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|99aa|up_5|AP018587.1_1663685_1663982_-	COG0011, COG0011, Uncharacterized conserved protein [Function unknown]	NA|207aa|up_4|AP018587.1_1664065_1664686_-	pfam05908, Gamma_PGA_hydro, Poly-gamma-glutamate hydrolase	NA|289aa|up_3|AP018587.1_1664843_1665710_-	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	NA|587aa|up_2|AP018587.1_1665710_1667471_-	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|265aa|up_1|AP018587.1_1667605_1668400_-	pfam13277, YmdB, YmdB-like protein	NA|72aa|up_0|AP018587.1_1668562_1668778_+	NA	NA|520aa|down_0|AP018587.1_1669088_1670648_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|351aa|down_1|AP018587.1_1670890_1671943_-	PRK09354, recA, recombinase A; Provisional	NA|384aa|down_2|AP018587.1_1672107_1673259_-	PRK00549, PRK00549, competence damage-inducible protein A; Provisional	NA|194aa|down_3|AP018587.1_1673444_1674026_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|131aa|down_4|AP018587.1_1674057_1674450_-	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|276aa|down_5|AP018587.1_1674468_1675296_-	pfam11868, DUF3388, Protein of unknown function (DUF3388)	NA|235aa|down_6|AP018587.1_1675480_1676185_-	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|429aa|down_7|AP018587.1_1676184_1677471_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|425aa|down_8|AP018587.1_1677470_1678745_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|237aa|down_9|AP018587.1_1678782_1679493_-	COG2188, PhnF, Transcriptional regulators [Transcription]
GCA_003966625.1_ASM396662v1	AP018587	Staphylococcus caprae JMUB898 DNA, complete genome	7	2246933-2247033	6	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TTCTTATGCAATGGACACCAGTCCATTGTAATCCT	35	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|93aa|up_9|AP018587.1_2235521_2235800_+,NA|99aa|up_5|AP018587.1_2240422_2240719_-,NA|99aa|down_4|AP018587.1_2250036_2250333_-,NA|152aa|down_5|AP018587.1_2250489_2250945_-	NA|93aa|up_9|AP018587.1_2235521_2235800_+	NA	NA|458aa|up_8|AP018587.1_2235876_2237250_-	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|517aa|up_7|AP018587.1_2237591_2239142_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|314aa|up_6|AP018587.1_2239345_2240287_-	PRK06223, PRK06223, malate dehydrogenase; Reviewed	NA|99aa|up_5|AP018587.1_2240422_2240719_-	NA	NA|309aa|up_4|AP018587.1_2240736_2241663_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|148aa|up_3|AP018587.1_2241887_2242331_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|566aa|up_2|AP018587.1_2242474_2244172_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|543aa|up_1|AP018587.1_2244174_2245803_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|291aa|up_0|AP018587.1_2246029_2246902_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|229aa|down_0|AP018587.1_2247289_2247976_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|150aa|down_1|AP018587.1_2247979_2248429_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|190aa|down_2|AP018587.1_2248439_2249009_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|187aa|down_3|AP018587.1_2249354_2249915_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|99aa|down_4|AP018587.1_2250036_2250333_-	NA	NA|152aa|down_5|AP018587.1_2250489_2250945_-	NA	NA|152aa|down_6|AP018587.1_2251002_2251458_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|230aa|down_7|AP018587.1_2251603_2252293_+	pfam06570, DUF1129, Protein of unknown function (DUF1129)	NA|163aa|down_8|AP018587.1_2252481_2252970_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|403aa|down_9|AP018587.1_2252976_2254185_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters
