The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
AP018784	Escherichia coli SK1144, complete genome	5029244	500270	505183	5029244	transposase	Stx2-converting_phage(50.0%)	8	NA	NA
BBF17602.1|500270_500492_-	CP4-44 prophage	NA	A0A142F0X9	Klebsiella_phage	44.4	2.1e-09
BBF17603.1|500578_501055_-	radC-like protein yeeS	NA	NA	NA	NA	NA
BBF17604.1|501070_501556_-	antirestriction protein	NA	A9J566	Pseudomonas_phage	31.5	3.4e-12
BBF17605.1|501610_502429_-	YubP	NA	A0A2C9CX26	Yersinia_phage	38.2	1.5e-44
BBF17606.1|502531_502720_+	hypothetical protein	NA	NA	NA	NA	NA
BBF17607.1|502847_503252_+	ISSfl3 protein	NA	A0A0P0ZCV4	Stx2-converting_phage	99.3	1.1e-69
BBF17608.1|503248_503596_+	IS66 family element, orf2	NA	A0A0P0ZDM8	Stx2-converting_phage	99.1	7.5e-62
BBF17609.1|503644_505183_+|transposase	IS66 family element, transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	98.6	4.5e-292
>prophage 2
AP018784	Escherichia coli SK1144, complete genome	5029244	647335	698111	5029244	integrase,tRNA,transposase	Escherichia_phage(25.0%)	50	639649:639664	678996:679011
639649:639664	attL	AGAACAGGTTATCCAC	NA	NA	NA	NA
BBF17743.1|647335_647791_-|transposase	transposase	transposase	NA	NA	NA	NA
BBF17744.1|647856_648243_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
BBF17745.1|648315_648777_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
BBF17746.1|648789_649725_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	39.9	3.2e-51
BBF17747.1|650143_650539_-	mRNA endoribonuclease	NA	NA	NA	NA	NA
BBF17748.1|650669_651383_-	oxidoreductase with NAD(P)-binding Rossmann-fold domain	NA	NA	NA	NA	NA
BBF17749.1|651453_652047_+	transcriptional regulator	NA	NA	NA	NA	NA
BBF17750.1|652191_652644_+	yjgK protein	NA	NA	NA	NA	NA
BBF17751.1|652766_653783_+	yjgL protein	NA	NA	NA	NA	NA
BBF17752.1|653793_654171_-|transposase	InsAB' transposase	transposase	U5P0U6	Shigella_phage	99.2	8.4e-67
BBF17753.1|654215_654491_-	IS1 protein InsA	NA	Q71TE9	Escherichia_phage	98.9	2.0e-46
BBF17754.1|654577_654886_+	yjgL protein	NA	NA	NA	NA	NA
BBF17755.1|654872_655103_+	yjgL protein	NA	NA	NA	NA	NA
BBF17756.1|655203_656208_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
BBF17757.1|656369_656786_+	protein inhibitor of RNase E	NA	NA	NA	NA	NA
BBF17758.1|656831_657335_-	acetyltransferase	NA	NA	NA	NA	NA
BBF17759.1|657527_658724_+	inner membrane protein	NA	NA	NA	NA	NA
BBF17760.1|658777_661633_-|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	7.9e-141
BBF17761.1|661632_662076_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
BBF17762.1|662237_663749_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.4	1.2e-47
BBF17763.1|664036_665116_+	permease YjgP/YjgQ family protein	NA	NA	NA	NA	NA
BBF17764.1|665115_666198_+	permease YjgP/YjgQ family protein	NA	NA	NA	NA	NA
BBF17765.1|666316_667819_-	ATPase	NA	A0A248XCZ8	Klebsiella_phage	44.3	1.5e-82
BBF17766.1|667896_668895_-	L-idonate regulatory protein	NA	NA	NA	NA	NA
BBF17767.1|668961_670281_-	Gnt-II system L-idonate transporter	NA	NA	NA	NA	NA
BBF17768.1|670345_671110_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
BBF17769.1|671133_672165_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA	NA
BBF17770.1|672381_672945_+	D-gluconate kinase, thermosensitive	NA	NA	NA	NA	NA
BBF17771.1|672948_673968_-	alcohol dehydrogenase, Zn-dependent and NAD(P)-binding	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.4	2.4e-44
BBF17772.1|674397_675324_-|integrase	phage integrase	integrase	NA	NA	NA	NA
BBF17773.1|675313_676933_-	putative uncharacterized protein	NA	NA	NA	NA	NA
BBF17774.1|676942_678148_-	antirestriction protein	NA	A0A1V0EEV1	Caulobacter_phage	37.7	2.8e-47
BBF17775.1|678233_678527_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF17776.1|678894_679767_-	hypothetical protein	NA	NA	NA	NA	NA
678996:679011	attR	AGAACAGGTTATCCAC	NA	NA	NA	NA
BBF17777.1|680011_681835_-	putative uncharacterized protein	NA	NA	NA	NA	NA
BBF17778.1|681827_684797_-	histidine kinase	NA	A0A1B5FPD5	Escherichia_phage	32.9	7.3e-81
BBF17779.1|684890_686087_-	cytosine specific DNA methyltransferase	NA	A0A191SAU1	Nostoc_phage	30.8	2.2e-36
BBF17780.1|686359_686860_-	predicted protein	NA	NA	NA	NA	NA
BBF17781.1|686893_687931_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
BBF17782.1|687914_688439_-	preprotein translocase subunit secA	NA	NA	NA	NA	NA
BBF17783.1|689428_689725_+	transcriptional regulator	NA	NA	NA	NA	NA
BBF17784.1|690354_691431_+	filamentation induced by cAMP protein Fic	NA	NA	NA	NA	NA
BBF17785.1|691481_692111_-	putative uncharacterized protein	NA	NA	NA	NA	NA
BBF17786.1|692203_692428_+	IS1 orfA	NA	A0A2L1IV22	Escherichia_phage	97.3	1.2e-36
BBF17787.1|692556_692850_+|transposase	IS1 transposase orfB	transposase	U5P0U6	Shigella_phage	89.7	2.0e-44
BBF17788.1|693021_693846_-	transcriptional regulator	NA	NA	NA	NA	NA
BBF17789.1|694011_695568_+	hypothetical protein	NA	NA	NA	NA	NA
BBF17790.1|695567_696257_+	putative N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
BBF17791.1|696368_696533_+	inner membrane protein	NA	NA	NA	NA	NA
BBF17792.1|697817_698111_-|transposase	transposase of ISEc21	transposase	NA	NA	NA	NA
>prophage 3
AP018784	Escherichia coli SK1144, complete genome	5029244	1404644	1448493	5029244	protease,integrase,tRNA,tail	Bacillus_virus(11.11%)	45	1417056:1417071	1459539:1459554
BBF18438.1|1404644_1405562_-|protease	protease, membrane anchored	protease	NA	NA	NA	NA
BBF18439.1|1405707_1406385_+	transporter subunit: ATP-binding component of ABC superfamily	NA	G3M9Y6	Bacillus_virus	34.3	2.4e-27
BBF18440.1|1406371_1407151_+	inner membrane protein ybbM	NA	NA	NA	NA	NA
BBF18441.1|1407333_1408188_-	thioredoxin	NA	NA	NA	NA	NA
BBF18442.1|1408248_1409058_-	oxidoreductase ybbO	NA	NA	NA	NA	NA
BBF18443.1|1409047_1409704_-|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	protease	NA	NA	NA	NA
BBF18444.1|1409641_1410328_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	2.9e-33
BBF18445.1|1410324_1412739_+	permease	NA	NA	NA	NA	NA
BBF18446.1|1412907_1414911_+	HNH endonuclease domain-containing protein	NA	NA	NA	NA	NA
BBF18447.1|1414900_1415065_+	hypothetical protein	NA	NA	NA	NA	NA
BBF18448.1|1415052_1415559_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18449.1|1415565_1416234_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18450.1|1416240_1416909_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18451.1|1416960_1418067_-|tRNA	tRNA 2-selenouridine synthase	tRNA	NA	NA	NA	NA
1417056:1417071	attL	GATACATCGGGTCGTA	NA	NA	NA	NA
BBF18452.1|1418135_1419062_-	DNA-binding transcriptional activator AllS	NA	NA	NA	NA	NA
BBF18453.1|1419291_1419774_+	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
BBF18454.1|1419851_1420667_+	putative regulator of allantoin and glyoxylate utilization operons	NA	NA	NA	NA	NA
BBF18455.1|1420756_1422538_+	glyoxylate carboligase	NA	E4WLQ6	Ostreococcus_tauri_virus	27.2	7.8e-38
BBF18456.1|1422550_1423327_+	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
BBF18457.1|1423426_1424305_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA	NA
BBF18458.1|1424474_1425929_+	allantoin permease	NA	NA	NA	NA	NA
BBF18459.1|1425988_1427350_+	allantoinase	NA	NA	NA	NA	NA
BBF18460.1|1427405_1428707_+	uracil/xanthine transporter	NA	NA	NA	NA	NA
BBF18461.1|1428728_1429874_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.0	9.7e-50
BBF18462.1|1430002_1430788_-	ylbA protein	NA	NA	NA	NA	NA
BBF18463.1|1430798_1432034_-	allantoate amidohydrolase	NA	NA	NA	NA	NA
BBF18464.1|1432055_1433105_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA	NA
BBF18465.1|1433421_1435089_+	membrane protein FdrA	NA	NA	NA	NA	NA
BBF18466.1|1435098_1436358_+	ylbE protein	NA	NA	NA	NA	NA
BBF18467.1|1436368_1437184_+	carboxylase	NA	NA	NA	NA	NA
BBF18468.1|1437180_1438074_+	carbamate kinase	NA	NA	NA	NA	NA
BBF18469.1|1438607_1439675_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA	NA
BBF18470.1|1439671_1440181_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	NA	NA	NA	NA	NA
BBF18471.1|1440276_1440606_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF18472.1|1440716_1441439_-	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA	NA
BBF18473.1|1441441_1441936_-	peptidyl-prolyl cis-trans isomerase B	NA	NA	NA	NA	NA
BBF18474.1|1442109_1443495_+|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	34.8	3.9e-45
BBF18475.1|1443530_1444052_-	inner membrane protein	NA	NA	NA	NA	NA
BBF18476.1|1444159_1444372_-	RNA-binding protein	NA	NA	NA	NA	NA
BBF18477.1|1444373_1445240_-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.7e-30
BBF18478.1|1445594_1445903_-|integrase	phage integrase	integrase	A0A088CD23	Shigella_phage	81.8	7.4e-37
BBF18479.1|1445922_1446222_-|integrase	phage integrase	integrase	B9UDL9	Salmonella_phage	81.2	5.0e-30
BBF18480.1|1446279_1446585_+|tail	tail fiber chaperone	tail	K7PMH7	Enterobacteria_phage	63.6	4.0e-43
BBF18481.1|1446639_1447296_-	unknown protein encoded within prophage	NA	NA	NA	NA	NA
BBF18482.1|1447539_1448493_-|protease	outer membrane protease	protease	NA	NA	NA	NA
1459539:1459554	attR	TACGACCCGATGTATC	NA	NA	NA	NA
>prophage 4
AP018784	Escherichia coli SK1144, complete genome	5029244	1790451	1833277	5029244	protease,tRNA,transposase	Bacillus_phage(16.67%)	37	NA	NA
BBF18794.1|1790451_1790772_+|protease	ATP-dependent Clp protease adaptor protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
BBF18795.1|1790802_1793079_+|protease	ATP-dependent Clp protease ATP-binding subunit clpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
BBF18796.1|1793875_1794469_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF18797.1|1794470_1795085_-	uncharacterized protein	NA	A4JWJ9	Burkholderia_virus	41.1	1.3e-24
BBF18798.1|1795086_1795614_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF18799.1|1795854_1796133_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF18800.1|1796129_1796609_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF18801.1|1796746_1796938_+	hypothetical protein	NA	NA	NA	NA	NA
BBF18802.1|1797783_1798035_+	uncharacterized protein	NA	J9RW58	Pseudomonas_phage	84.2	4.0e-09
BBF18803.1|1798076_1799000_-|transposase	IS102 transposase	transposase	Q1MVF0	Enterobacteria_phage	97.1	1.6e-172
BBF18804.1|1799191_1799392_+	uncharacterized protein	NA	J9RW58	Pseudomonas_phage	72.7	3.2e-09
BBF18805.1|1799448_1799628_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18806.1|1800143_1800362_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
BBF18807.1|1800646_1801351_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
BBF18808.1|1801392_1803114_-	cysteine/glutathione ABC transporter	NA	W8CYL7	Bacillus_phage	25.0	1.4e-20
BBF18809.1|1803114_1804881_-	ATP-binding/permease protein cydD	NA	W8CYL7	Bacillus_phage	24.3	4.1e-23
BBF18810.1|1805003_1805969_-	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	1.9e-62
BBF18811.1|1806512_1807007_+	leucine-responsive transcriptional regulator	NA	NA	NA	NA	NA
BBF18812.1|1807141_1811248_+	DNA translocase	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
BBF18813.1|1811312_1811915_-|transposase	transposase ORF B, IS3 family, IS150 group	transposase	A0A1B1P773	Bacillus_phage	56.8	1.7e-61
BBF18814.1|1812139_1812313_-|transposase	transposase ORF A, IS1397	transposase	NA	NA	NA	NA
BBF18815.1|1812839_1813454_+	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
BBF18816.1|1813464_1814808_+	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
BBF18817.1|1814898_1816191_+|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
BBF18818.1|1816429_1818874_+	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.8	6.6e-221
BBF18819.1|1818884_1819502_+	anaerobic dimethyl sulfoxide reductase chain B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
BBF18820.1|1819503_1820367_+	dimethyl sulfoxide reductase, anaerobic subunit C	NA	NA	NA	NA	NA
BBF18821.1|1820402_1821029_-	isochorismatase superfamily hydrolase	NA	NA	NA	NA	NA
BBF18822.1|1821342_1822491_+	MFS family transporter protein	NA	NA	NA	NA	NA
BBF18823.1|1822587_1823328_-	pyruvate formate lyase-activating enzyme 1	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	8.0e-21
BBF18824.1|1823519_1825802_-	pyruvate formate lyase I	NA	A0A2P0VNR5	Tetraselmis_virus	41.5	1.0e-162
BBF18825.1|1825856_1826714_-	formate transporter	NA	NA	NA	NA	NA
BBF18826.1|1827119_1828880_-	hypothetical protein	NA	NA	NA	NA	NA
BBF18827.1|1829009_1829702_+	inner membrane protein	NA	NA	NA	NA	NA
BBF18828.1|1829900_1830989_+	3-phosphoserine/phosphohydroxythreonine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.8	2.7e-81
BBF18829.1|1831059_1832343_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
BBF18830.1|1832512_1833277_+|protease	metalloprotease ycal	protease	NA	NA	NA	NA
>prophage 5
AP018784	Escherichia coli SK1144, complete genome	5029244	1859659	1905461	5029244	tRNA,tail,plate,transposase	Burkholderia_virus(39.53%)	62	NA	NA
BBF18852.1|1859659_1861060_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2K9V902	Bandra_megavirus	36.1	6.9e-82
BBF18853.1|1861228_1862431_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
BBF18854.1|1862696_1865309_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	5.3e-19
BBF18855.1|1865351_1865609_-	aliphatic sulfonates transport ATP-binding subunit	NA	NA	NA	NA	NA
BBF18856.1|1865692_1866265_-	Min	NA	A0A0A7NPV4	Enterobacteria_phage	84.6	7.9e-85
BBF18857.1|1866549_1866840_+|tail	phage tail fiber protein	tail	NA	NA	NA	NA
BBF18858.1|1866880_1867363_+|tail	phage tail fiber protein	tail	K7P7Q7	Enterobacteria_phage	45.3	3.4e-28
BBF18859.1|1867362_1867977_+|tail	tail fiber assembly protein	tail	Q9MCR5	Enterobacteria_phage	61.5	2.3e-61
BBF18860.1|1867983_1869876_-|tail	phage tail fiber protein	tail	A0A0K2FIZ6	Escherichia_phage	42.9	1.3e-38
BBF18861.1|1869878_1870457_-|tail	putative bacteriophage tail fiber protein	tail	A4JWL7	Burkholderia_virus	66.8	1.7e-66
BBF18862.1|1870449_1871553_-|plate	phage-related baseplate assembly protein J	plate	Q6QI99	Burkholderia_phage	55.2	6.4e-107
BBF18863.1|1871543_1871891_-|plate	bacteriophage baseplate protein	plate	Q6QIA0	Burkholderia_phage	62.4	5.9e-35
BBF18864.1|1871945_1872542_-|plate	phage baseplate assembly protein V	plate	A4JWL4	Burkholderia_virus	45.7	1.4e-36
BBF18865.1|1872538_1873693_-	putative phage late genes expression control protein	NA	Q6QIA2	Burkholderia_phage	47.6	3.2e-85
BBF18866.1|1873680_1873893_-|tail	phage tail protein	tail	Q6QIA3	Burkholderia_phage	57.1	1.2e-17
BBF18867.1|1873892_1874777_-	P2 GpU	NA	A4JWL1	Burkholderia_virus	47.9	6.8e-51
BBF18868.1|1874776_1877989_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.9	1.3e-80
BBF18869.1|1878146_1878482_-	phage-like protein	NA	NA	NA	NA	NA
BBF18870.1|1878579_1878861_-	phage-like protein	NA	NA	NA	NA	NA
BBF18871.1|1878863_1879385_-|tail	bacteriophage tail core protein	tail	A4JWK6	Burkholderia_virus	67.6	1.8e-67
BBF18872.1|1879384_1880812_-|tail	bacteriophage tail sheath protein	tail	A4JWK5	Burkholderia_virus	76.3	4.5e-214
BBF18873.1|1880801_1881053_-	phage-like protein	NA	NA	NA	NA	NA
BBF18874.1|1881052_1881517_-	conserved phage-related protein	NA	Q6QIB2	Burkholderia_phage	51.7	9.1e-39
BBF18875.1|1881516_1881963_-	phage-like protein	NA	A4JWK2	Burkholderia_virus	52.3	2.2e-34
BBF18876.1|1881964_1882303_-	phage-like protein	NA	NA	NA	NA	NA
BBF18877.1|1882312_1883266_-	phage-like protein	NA	A4JWK0	Burkholderia_virus	43.8	3.4e-64
BBF18878.1|1883280_1884396_-	phage-like protein	NA	A4JWJ9	Burkholderia_virus	51.6	9.4e-98
BBF18879.1|1884610_1885069_-	putative phage virion morphogenesis protein	NA	Q6QIB8	Burkholderia_phage	44.2	3.4e-30
BBF18880.1|1885071_1885893_-	phage Mu F virion morphogenesis protein	NA	A4JWJ6	Burkholderia_virus	61.2	1.2e-97
BBF18881.1|1885873_1887370_-	Gp29	NA	A4JWJ5	Burkholderia_virus	59.6	2.6e-167
BBF18882.1|1887369_1888893_-	Mu-like prophage FluMu protein gp28	NA	A4JWJ4	Burkholderia_virus	62.7	6.2e-185
BBF18883.1|1888889_1889432_-	Mu-like phage-related protein	NA	A4JWJ3	Burkholderia_virus	53.3	4.9e-44
BBF18884.1|1889434_1889746_-	phage protein	NA	A0A0S4L0A3	Pseudomonas_phage	60.6	4.0e-30
BBF18885.1|1889745_1890072_-	prophage membrane protein	NA	Q6QIC4	Burkholderia_phage	49.5	9.6e-19
BBF18886.1|1890068_1890722_-	lipoprotein	NA	A0A0S4L1H0	Pseudomonas_phage	31.9	4.3e-10
BBF18887.1|1890708_1891446_-	phage lytic murein transglycosylase	NA	Q5ZQZ1	Pseudomonas_phage	59.5	2.9e-63
BBF18888.1|1891448_1891799_-	phage-related membrane protein	NA	A4JWP3	Burkholderia_virus	53.9	9.0e-23
BBF18889.1|1891929_1892673_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18890.1|1892648_1893053_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF18891.1|1893051_1893267_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18892.1|1893458_1894223_+	DNA adenine methylase subfamily	NA	A2I2Y7	Vibrio_virus	64.4	4.0e-100
BBF18893.1|1894339_1894753_-	uncharacterized protein	NA	F6MII3	Haemophilus_phage	34.4	5.9e-05
BBF18894.1|1894778_1894967_+	predicted transcriptional regulators	NA	Q5ZQZ9	Pseudomonas_phage	71.0	3.9e-17
BBF18895.1|1895013_1895328_+	phage-related protein helix-turn-helix domain superfamily	NA	Q5ZR02	Pseudomonas_phage	55.9	3.6e-23
BBF18896.1|1895338_1896250_+	phage protein	NA	A4JWN3	Burkholderia_virus	55.3	2.0e-74
BBF18897.1|1896253_1898023_+|transposase	phage transposase	transposase	Q6QIE0	Burkholderia_phage	68.7	1.6e-229
BBF18898.1|1898033_1899200_+	ExeA-like protein	NA	A4JWN1	Burkholderia_virus	59.7	9.7e-122
BBF18899.1|1899202_1899472_+	prophage protein	NA	NA	NA	NA	NA
BBF18900.1|1899499_1900030_+	Mu-like prophage host-nuclease inhibitor protein Gam	NA	L7P7T1	Pseudomonas_phage	66.7	1.2e-58
BBF18901.1|1900127_1900322_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18902.1|1900318_1900591_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18903.1|1900600_1900897_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18904.1|1900911_1901127_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18905.1|1901123_1901807_+	phage associated protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	36.5	3.8e-33
BBF18906.1|1901803_1902034_+	corresponds to STY1594 from Accession AL513382:Salmonella typhi CT18	NA	NA	NA	NA	NA
BBF18907.1|1902023_1902230_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF18908.1|1902231_1902681_+	Mu-like prophage protein gp16	NA	A4JWM5	Burkholderia_virus	45.1	1.4e-23
BBF18909.1|1902652_1903051_+	DNA-binding protein rdgB	NA	Q6QIE8	Burkholderia_phage	55.9	1.0e-30
BBF18910.1|1903165_1903798_+	permeases of the major facilitator superfamily	NA	NA	NA	NA	NA
BBF18911.1|1903801_1903963_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF18912.1|1904118_1904670_-	aliphatic sulfonates transport ATP-binding subunit	NA	G3M9Y6	Bacillus_virus	37.3	1.2e-21
BBF18913.1|1904666_1905461_-	alkanesulfonates transport system permease protein	NA	G3M9Y4	Bacillus_virus	24.5	1.4e-15
>prophage 6
AP018784	Escherichia coli SK1144, complete genome	5029244	2075544	2176362	5029244	integrase,terminase,tRNA,head,capsid,portal,holin,tail,lysis	Enterobacteria_phage(50.0%)	121	2097901:2097920	2158988:2159007
BBF19084.1|2075544_2077986_-	exonuclease	NA	V5UQJ3	Shigella_phage	46.9	3.1e-114
BBF19085.1|2078079_2078271_-	Qin prophage	NA	NA	NA	NA	NA
BBF19086.1|2078267_2078456_-	cell division inhibition protein	NA	NA	NA	NA	NA
BBF19087.1|2079024_2079243_-	Qin prophage protein	NA	NA	NA	NA	NA
BBF19088.1|2079272_2079401_-	predicted protein	NA	NA	NA	NA	NA
BBF19089.1|2079402_2079639_-	Qin prophage	NA	M4QQ57	Salicola_phage	53.2	4.6e-07
BBF19090.1|2079823_2080243_-	phage repressor protein	NA	K7PK07	Enterobacteria_phage	65.1	8.8e-25
BBF19091.1|2080343_2080625_+	uncharacterized protein	NA	K7PHA1	Enterobacteria_phage	72.6	8.5e-24
BBF19092.1|2080608_2081034_+	phage regulatory protein	NA	NA	NA	NA	NA
BBF19093.1|2081105_2082170_+	replication protein	NA	A0A088CD36	Shigella_phage	64.6	7.9e-62
BBF19094.1|2082210_2082633_+	phage protein	NA	A0A0U2QQN3	Escherichia_phage	91.4	3.3e-64
BBF19095.1|2082690_2083047_+	putative bacteriophage protein	NA	A0A2R2Z307	Escherichia_phage	99.2	1.8e-58
BBF19096.1|2083140_2083323_+	putative uncharacterized protein	NA	A0A2R2Z308	Escherichia_phage	100.0	1.4e-27
BBF19097.1|2083315_2083492_+	uncharacterized protein	NA	A0A2R2X2A8	Escherichia_phage	93.1	9.7e-26
BBF19098.1|2084413_2084569_+	prophage maintenance protein	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
BBF19099.1|2085307_2086357_+	Qin prophage	NA	U5P0K4	Shigella_phage	54.6	2.9e-109
BBF19100.1|2086369_2086726_+	Holliday junction resolvase	NA	V5URS4	Shigella_phage	61.8	1.8e-34
BBF19101.1|2086740_2087562_+	late gene regulator	NA	K7P7B9	Enterobacteria_phage	58.6	6.1e-78
BBF19102.1|2088866_2089202_-	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	74.8	5.2e-44
BBF19103.1|2089462_2089651_+	YjhS	NA	H6WZJ9	Escherichia_phage	95.2	7.2e-27
BBF19104.1|2089647_2089809_+	YjhS	NA	Q08JA2	Stx2-converting_phage	89.1	2.0e-14
BBF19105.1|2089958_2090174_+|holin	holin protein	holin	A0A2R2Z340	Escherichia_phage	98.6	3.4e-33
BBF19106.1|2090178_2090523_+	phage protein	NA	K7PGU6	Enterobacteria_phage	92.9	7.0e-36
BBF19107.1|2090488_2090761_-	ybl58	NA	NA	NA	NA	NA
BBF19108.1|2090866_2091400_+	endolysin	NA	K7PLY1	Enterobacteria_phage	96.0	4.8e-100
BBF19109.1|2091396_2091864_+	endopeptidase	NA	Q9AZ06	Salmonella_phage	89.7	5.0e-69
BBF19110.1|2092206_2092731_+	rha protein	NA	G8C7W4	Escherichia_phage	93.6	2.9e-86
BBF19111.1|2093033_2093444_-	DLP12 prophage protein	NA	C6ZCX4	Enterobacteria_phage	77.8	2.7e-55
BBF19112.1|2093501_2093735_-	ynfO qin prophage	NA	A0A0K2FIR8	Escherichia_phage	94.4	4.3e-21
BBF19113.1|2094128_2094638_+|terminase	terminase small subunit	terminase	A0A1I9KFT4	Aeromonas_phage	32.7	3.6e-12
BBF19114.1|2094609_2096538_+|terminase	terminase large subunit	terminase	A0A0K2FJ14	Enterobacteria_phage	66.4	3.6e-262
BBF19115.1|2096521_2096728_+|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	55.4	3.0e-10
BBF19116.1|2096724_2098317_+|portal	portal protein	portal	K7P6U7	Enterobacteria_phage	60.9	4.2e-184
2097901:2097920	attL	TTTATGGGGCGGCGAAAATT	NA	NA	NA	NA
BBF19117.1|2098306_2099812_+|head,tail	head-tail preconnector protein GP5	head,tail	A0A2I6TC87	Escherichia_phage	53.7	3.6e-100
BBF19118.1|2099848_2100196_+|head	head-DNA stabilization protein	head	A0A2R9YJN3	Escherichia_phage	55.9	2.9e-21
BBF19119.1|2100253_2101282_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.9	8.6e-114
BBF19120.1|2101333_2101717_+	DNA packaging protein	NA	NA	NA	NA	NA
BBF19121.1|2101709_2102063_+|head,tail	head-tail adaptor	head,tail	A0A0K2FJB7	Enterobacteria_phage	70.1	1.1e-41
BBF19122.1|2102078_2102612_+|tail	minor tail protein	tail	A0A2R9YJK4	Escherichia_phage	64.1	1.2e-55
BBF19123.1|2102608_2103004_+|tail	minor tail protein	tail	A0A2R9YJI2	Escherichia_phage	82.4	1.5e-58
BBF19124.1|2103011_2103758_+|tail	major tail protein V	tail	Q687F6	Enterobacteria_phage	93.4	8.7e-124
BBF19125.1|2103776_2104208_+|tail	minor tail protein	tail	A0A0K2FIQ8	Enterobacteria_phage	67.4	2.4e-41
BBF19126.1|2104234_2104648_+|tail	minor tail protein	tail	S5MDP5	Escherichia_phage	82.2	1.6e-42
BBF19127.1|2104628_2107190_+|tail	tail length tape measure protein	tail	A0A0K2FI43	Enterobacteria_phage	90.0	0.0e+00
BBF19128.1|2107186_2107516_+|tail	phage minor tail protein	tail	Q687F2	Enterobacteria_phage	100.0	4.3e-59
BBF19129.1|2107515_2108214_+|tail	minor tail protein	tail	S5M7Q4	Escherichia_phage	97.0	7.6e-130
BBF19130.1|2108219_2108963_+|tail	tail assembly protein	tail	K7PLW1	Enterobacteria_phage	93.4	8.3e-143
BBF19131.1|2108926_2109541_+|tail	tail assembly protein	tail	B6ETG3	Enterobacteria_phage	92.1	5.5e-92
BBF19132.1|2109998_2113577_+	host specificity protein	NA	A0A0P0ZCI5	Stx2-converting_phage	85.5	0.0e+00
BBF19133.1|2113644_2114244_+	Ail/Lom family protein	NA	Q9EV15	Enterobacteria_phage	92.5	4.4e-102
BBF19134.1|2114395_2116459_+|tail	putative phage tail fiber protein	tail	A0A1X7QGG5	Escherichia_phage	62.7	3.7e-148
BBF19135.1|2116455_2116734_+	uncharacterized protein	NA	A0A0E3JSQ1	Enterobacteria_phage	50.5	1.0e-21
BBF19136.1|2116743_2117037_+	predicted protein	NA	NA	NA	NA	NA
BBF19137.1|2117229_2117886_-	unknown protein encoded within prophage	NA	NA	NA	NA	NA
BBF19138.1|2117954_2118221_+|tail	tail fiber chaperone	tail	K7PMH7	Enterobacteria_phage	78.3	2.3e-18
BBF19139.1|2118452_2119316_-	potB	NA	Q6GZ02	Mycoplasma_phage	28.7	6.7e-11
BBF19140.1|2119299_2120436_-	spermidine/putrescine import ATP-binding protein potA	NA	Q6GZ03	Mycoplasma_phage	39.8	5.5e-29
BBF19141.1|2120685_2121912_+	peptidase T	NA	NA	NA	NA	NA
BBF19142.1|2121960_2123082_-	cupin 4 family protein	NA	NA	NA	NA	NA
BBF19143.1|2123157_2124618_-	sensor protein PhoQ	NA	NA	NA	NA	NA
BBF19144.1|2124617_2125289_-	virulence transcriptional regulatory protein phoP	NA	NA	NA	NA	NA
BBF19145.1|2125457_2126828_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	44.9	7.9e-107
BBF19146.1|2126831_2127479_-	ycfC protein	NA	NA	NA	NA	NA
BBF19147.1|2127508_2128660_-|tRNA	tRNA-specific 2-thiouridylase mnmA	tRNA	NA	NA	NA	NA
BBF19148.1|2128668_2129130_-	nudix hydrolase ymfB	NA	NA	NA	NA	NA
BBF19149.1|2129139_2129673_-	ribosomal large subunit pseudouridine synthase E	NA	NA	NA	NA	NA
BBF19150.1|2129964_2131215_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
BBF19151.1|2131328_2132471_-|integrase	integrase	integrase	Q77Z02	Phage_21	100.0	3.6e-206
BBF19152.1|2132460_2132697_-	excisionase	NA	NA	NA	NA	NA
BBF19153.1|2132836_2133076_-	predicted protein	NA	M1FPC8	Enterobacteria_phage	96.2	4.7e-39
BBF19154.1|2133059_2133386_-	phage related protein	NA	A5VWB6	Enterobacteria_phage	95.7	9.8e-48
BBF19155.1|2133705_2133921_-	predicted protein	NA	A0A1I9LJM7	Stx_converting_phage	95.8	5.5e-31
BBF19156.1|2133997_2134189_-	phage protein	NA	A0A0P0ZC67	Stx2-converting_phage	93.7	1.8e-25
BBF19157.1|2134340_2135021_-	exonuclease	NA	A0A0P0ZCD4	Stx2-converting_phage	100.0	1.6e-132
BBF19158.1|2135017_2135803_-	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
BBF19159.1|2135808_2136105_-	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	100.0	1.6e-49
BBF19160.1|2136180_2136387_-	prophage Kil protein	NA	K7P6H3	Enterobacteria_phage	85.1	3.5e-27
BBF19161.1|2137289_2138315_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19162.1|2138408_2139164_-	regulatory protein CI bacteriophage origin	NA	Q76H56	Enterobacteria_phage	75.0	1.8e-92
BBF19163.1|2139202_2139433_+	predicted protein	NA	A0A2H4FNF3	Salmonella_phage	66.7	2.1e-20
BBF19164.1|2139502_2140042_+	regulatory protein CII from bacteriophage origin	NA	M9NZI6	Enterobacteria_phage	66.7	4.0e-62
BBF19165.1|2140038_2141058_+	phage replication protein O	NA	M1FN81	Enterobacteria_phage	68.0	1.8e-111
BBF19166.1|2141054_2141756_+	replication protein	NA	A0A0P0ZD31	Stx2-converting_phage	97.4	5.1e-126
BBF19167.1|2142006_2145915_+	attaching and effacing protein, pathogenesis factor	NA	NA	NA	NA	NA
BBF19168.1|2145951_2146995_-	alpha/beta hydrolase fold domain protein	NA	NA	NA	NA	NA
BBF19169.1|2147442_2147898_+	phage protein	NA	I6PD71	Cronobacter_phage	66.9	1.2e-59
BBF19170.1|2147897_2148068_+	prophage protein NinE	NA	K7P7K0	Enterobacteria_phage	67.9	5.3e-13
BBF19171.1|2148060_2148351_+	82 prophage-derived protein ybcO	NA	K7PGZ6	Enterobacteria_phage	93.8	1.3e-46
BBF19172.1|2148347_2148710_+	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	95.7	7.3e-60
BBF19173.1|2148932_2149316_+	antitermination protein Q	NA	A0A088CD47	Shigella_phage	82.5	2.0e-55
BBF19174.1|2149504_2150587_-	outer membrane porin protein from phage origin	NA	Q1MVN1	Enterobacteria_phage	80.1	1.6e-166
BBF19175.1|2151176_2151392_+|lysis	DLP12 prophage phage lysis protein	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
BBF19176.1|2151396_2151711_+	bacteriophage protein	NA	K7PGU6	Enterobacteria_phage	99.0	8.3e-52
BBF19177.1|2151707_2151947_-	predicted protein	NA	NA	NA	NA	NA
BBF19178.1|2152081_2152615_+	endolysin	NA	K7PLY1	Enterobacteria_phage	94.9	5.8e-98
BBF19179.1|2152611_2153073_+|lysis	bacteriophage lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	97.4	2.3e-74
BBF19180.1|2153104_2153398_-	Iss	NA	K7PL54	Enterobacteria_phage	92.8	7.0e-45
BBF19181.1|2153965_2154205_+	partial tonB-like membrane protein encoded within prophage	NA	H6WZK5	Escherichia_phage	78.7	1.5e-29
BBF19182.1|2154411_2154594_+	conserved hypothetical protein	NA	NA	NA	NA	NA
BBF19183.1|2155157_2155703_+|terminase	terminase small subunit	terminase	A0A0K2FIG2	Enterobacteria_phage	99.4	4.7e-95
BBF19184.1|2155857_2157603_+|terminase	terminase large subunit	terminase	A0A0K2FJ14	Enterobacteria_phage	99.7	0.0e+00
BBF19185.1|2157599_2157806_+|head,tail	head-tail joining protein	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
BBF19186.1|2157802_2159404_+|portal	portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.2	1.4e-309
2158988:2159007	attR	TTTATGGGGCGGCGAAAATT	NA	NA	NA	NA
BBF19187.1|2159384_2160716_+|capsid	minor capsid protein C	capsid	A0A0K2FI53	Enterobacteria_phage	96.8	3.0e-228
BBF19188.1|2160725_2161109_+|head	head-DNA stabilization protein	head	A0A2R9YJN3	Escherichia_phage	89.7	7.7e-44
BBF19189.1|2161112_2162138_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	96.2	6.4e-186
BBF19190.1|2162179_2162575_+	DNA packaging protein	NA	A0A2R9YJP4	Escherichia_phage	90.9	2.6e-55
BBF19191.1|2162586_2162940_+|head,tail	head-tail adaptor	head,tail	A0A2R9YJJ5	Escherichia_phage	96.6	1.9e-60
BBF19192.1|2162950_2163529_+|tail	minor tail protein	tail	A0A2R9YJK4	Escherichia_phage	95.3	6.8e-76
BBF19193.1|2163525_2163921_+|tail	minor tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	99.2	1.3e-70
BBF19194.1|2163928_2164669_+|tail	major tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	98.8	1.1e-131
BBF19195.1|2164684_2165107_+|tail	minor tail protein	tail	A0A0K2FIQ8	Enterobacteria_phage	95.0	2.2e-68
BBF19196.1|2165088_2165523_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	99.2	7.6e-64
BBF19197.1|2165515_2168083_+|tail	tail length tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	91.9	0.0e+00
BBF19198.1|2168079_2168409_+|tail	minor tail protein	tail	A0A2R9YJM0	Escherichia_phage	100.0	1.6e-58
BBF19199.1|2168408_2169107_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	98.7	3.6e-132
BBF19200.1|2169220_2169856_+|tail	tail fiber component K of prophage	tail	K7PLW1	Enterobacteria_phage	97.6	2.4e-127
BBF19201.1|2169753_2170425_+|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	99.1	3.1e-104
BBF19202.1|2170485_2173968_+	fibronectin type III domain-containing protein	NA	A0A291AWT4	Escherichia_phage	89.9	0.0e+00
BBF19203.1|2174026_2176087_+|tail	putative phage tail fiber protein	tail	A0A0E3M194	Enterobacteria_phage	53.5	3.3e-125
BBF19204.1|2176083_2176362_+	predicted protein	NA	A0A0E3JSQ1	Enterobacteria_phage	57.6	7.6e-25
>prophage 7
AP018784	Escherichia coli SK1144, complete genome	5029244	2225733	2252206	5029244	integrase,transposase	Shigella_phage(28.57%)	32	2218817:2218831	2257913:2257927
2218817:2218831	attL	ACCTCGCGAAAACGT	NA	NA	NA	NA
BBF19265.1|2225733_2226657_-|transposase	IS102 transposase	transposase	Q1MVF0	Enterobacteria_phage	97.1	1.6e-172
BBF19266.1|2227249_2229007_+	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
BBF19267.1|2229028_2229196_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19268.1|2229253_2230381_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19269.1|2230377_2230893_+	phage protein	NA	NA	NA	NA	NA
BBF19270.1|2230894_2232781_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19271.1|2233348_2233594_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19272.1|2233660_2233996_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19273.1|2234026_2234386_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
BBF19274.1|2234400_2234928_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19275.1|2234939_2235209_-	transcriptional regulator	NA	A0A0C4UQU0	Shigella_phage	58.7	3.4e-14
BBF19276.1|2235330_2235819_+	phage protein	NA	NA	NA	NA	NA
BBF19277.1|2236143_2236566_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19278.1|2236607_2237147_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19279.1|2237148_2237601_+	putative phageDNA repair protein	NA	NA	NA	NA	NA
BBF19280.1|2237662_2238577_+|integrase	phage integrase	integrase	A0A1B1P7C7	Bacillus_phage	28.5	4.3e-08
BBF19281.1|2238563_2239178_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19282.1|2239400_2239598_+	phage protein	NA	A0A1V0E8E5	Vibrio_phage	43.9	2.5e-06
BBF19283.1|2239599_2240067_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19284.1|2240154_2241009_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19285.1|2241585_2242983_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19286.1|2243160_2243358_+|integrase	integrase, catalytic region	integrase	NA	NA	NA	NA
BBF19287.1|2243979_2246637_+	predicted membrane protein	NA	NA	NA	NA	NA
BBF19288.1|2246633_2246846_+	transmembrane protein	NA	NA	NA	NA	NA
BBF19289.1|2246859_2248029_+	transmembrane protein	NA	NA	NA	NA	NA
BBF19290.1|2248215_2248407_-	hypothetical protein	NA	NA	NA	NA	NA
BBF19291.1|2248511_2248709_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19292.1|2248910_2249162_+|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	92.8	7.8e-37
BBF19293.1|2249293_2249467_+	permease	NA	NA	NA	NA	NA
BBF19294.1|2249784_2250276_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	63.5	2.1e-54
BBF19295.1|2250635_2250920_-|transposase	ISEc14 transposase A	transposase	NA	NA	NA	NA
BBF19296.1|2251030_2252206_-|integrase	phage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	39.4	1.7e-73
2257913:2257927	attR	ACCTCGCGAAAACGT	NA	NA	NA	NA
>prophage 8
AP018784	Escherichia coli SK1144, complete genome	5029244	2543438	2552265	5029244		Escherichia_phage(66.67%)	10	NA	NA
BBF19555.1|2543438_2544653_-	starvation sensing protein	NA	Q6A202	Oenococcus_phage	29.2	8.2e-47
BBF19556.1|2544858_2545185_-	membrane protein ynfA	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
BBF19557.1|2545319_2545661_+	ynfB	NA	NA	NA	NA	NA
BBF19558.1|2545695_2546256_+	spermidine N(1)-acetyltransferase	NA	NA	NA	NA	NA
BBF19559.1|2546258_2547005_-	lipoprotein	NA	NA	NA	NA	NA
BBF19560.1|2547076_2547382_+	ynfD protein	NA	NA	NA	NA	NA
BBF19561.1|2547580_2550007_+	oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	49.2	1.7e-213
BBF19562.1|2550064_2550829_+	oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	48.1	8.8e-47
BBF19563.1|2550825_2551563_+	anaerobic dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	41.1	4.6e-45
BBF19564.1|2551647_2552265_+	dimethylsulfoxide reductase, chain B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
>prophage 9
AP018784	Escherichia coli SK1144, complete genome	5029244	2676934	2723942	5029244	integrase,terminase,tRNA,capsid,plate,portal,tail,holin,protease	Enterobacteria_phage(74.42%)	52	2679337:2679361	2716583:2716607
BBF19682.1|2676934_2677684_-	vitamin B12 transporter ATPase	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	9.3e-09
BBF19683.1|2677683_2678235_-	btuE	NA	NA	NA	NA	NA
BBF19684.1|2678297_2679278_-	vitamin B12 ABC transporter permease	NA	NA	NA	NA	NA
2679337:2679361	attL	AAAGAAAAAAGGCCGCAGAGCGGCC	NA	NA	NA	NA
BBF19685.1|2679467_2679863_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19686.1|2679873_2680809_-|integrase	integrase	integrase	A0A0M4RTQ0	Salmonella_phage	50.8	5.6e-80
BBF19687.1|2680897_2681206_-	repressor protein	NA	A0A0M5M1I9	Salmonella_phage	53.1	1.3e-22
BBF19688.1|2681302_2681581_+	DNA-binding protein	NA	NA	NA	NA	NA
BBF19689.1|2681595_2681934_+	uncharacterized protein	NA	A0A0A7NV42	Enterobacteria_phage	84.5	1.9e-49
BBF19690.1|2681944_2682223_+	uncharacterized protein	NA	A0A0A7NRX5	Enterobacteria_phage	77.2	9.9e-33
BBF19691.1|2682234_2682477_+	uncharacterized protein	NA	A0A0A7NQ71	Enterobacteria_phage	100.0	2.3e-38
BBF19692.1|2682674_2682878_+	hypothetical protein	NA	A0A0A7NPS8	Enterobacteria_phage	80.6	9.5e-25
BBF19693.1|2682874_2683093_+	uncharacterized protein	NA	A0A0A7NRX6	Enterobacteria_phage	56.2	6.6e-08
BBF19694.1|2683201_2683591_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19695.1|2683587_2686428_+	replication protein	NA	A0A0A7NQ77	Enterobacteria_phage	88.4	0.0e+00
BBF19696.1|2686504_2687464_+	plasmid partition protein	NA	A0A0A7NPX4	Enterobacteria_phage	99.4	1.1e-179
BBF19697.1|2687468_2687780_+	plasmid partition protein	NA	A0A0A7NPT5	Enterobacteria_phage	94.2	7.2e-48
BBF19698.1|2688158_2689241_+	ATPase, AAA-superfamily	NA	R4TQL5	Phaeocystis_globosa_virus	29.5	8.4e-19
BBF19699.1|2689237_2691442_+|protease	proteases	protease	NA	NA	NA	NA
BBF19700.1|2691947_2692994_-|portal	portal protein	portal	A0A0A7NPT9	Enterobacteria_phage	100.0	1.5e-206
BBF19701.1|2692993_2694745_-|terminase	phage terminase ATPase subunit	terminase	A0A0A7NV54	Enterobacteria_phage	97.9	0.0e+00
BBF19702.1|2694899_2695736_+	scaffolding protein	NA	A0A0A7NRY7	Enterobacteria_phage	97.8	1.1e-146
BBF19703.1|2695759_2696812_+|capsid	phage major capsid protein	capsid	A0A0A7NQ82	Enterobacteria_phage	97.1	1.9e-193
BBF19704.1|2696857_2697658_+|terminase	phage terminase endonuclease subunit	terminase	A0A0A7NPX9	Enterobacteria_phage	91.4	6.6e-130
BBF19705.1|2697760_2698255_+|capsid	capsid completion protein	capsid	A0A0A7NPU2	Enterobacteria_phage	98.8	6.6e-88
BBF19706.1|2698254_2698455_+|tail	tail component protein	tail	A0A0A7NV57	Enterobacteria_phage	100.0	3.5e-32
BBF19707.1|2698457_2698781_+|holin	holin protein	holin	A0A0A7NRY9	Enterobacteria_phage	99.1	1.6e-50
BBF19708.1|2698777_2699170_+	endolysin	NA	A0A0A7NQ86	Enterobacteria_phage	99.2	9.9e-71
BBF19709.1|2699166_2699574_+	prophage lipoprotein	NA	A0A0A7NPY2	Enterobacteria_phage	97.8	2.2e-65
BBF19710.1|2699711_2700179_+|tail	P2 phage tail completion protein R	tail	A0A0A7NPU6	Enterobacteria_phage	100.0	2.6e-86
BBF19711.1|2700162_2700807_+|tail	phage tail completion protein S	tail	A0A0A7NV60	Enterobacteria_phage	99.1	5.4e-114
BBF19712.1|2700803_2701385_+|plate	baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	97.4	4.3e-102
BBF19713.1|2701381_2701732_+|plate	phage baseplate assembly protein	plate	A0A0A7NQ90	Enterobacteria_phage	99.1	3.5e-59
BBF19714.1|2701735_2702632_+|plate	baseplate assembly protein J	plate	A0A0A7NPY5	Enterobacteria_phage	97.7	3.9e-155
BBF19715.1|2702624_2703152_+|tail	phage tail protein I	tail	A0A0A7NPV1	Enterobacteria_phage	88.3	2.8e-84
BBF19716.1|2703162_2705898_+|tail	phage tail fiber protein gpH	tail	Q858V4	Yersinia_virus	80.1	0.0e+00
BBF19717.1|2705901_2706429_+|tail	tail fiber assembly protein	tail	A0A077SK10	Escherichia_phage	90.9	3.9e-86
BBF19718.1|2706682_2707171_-|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	100.0	1.6e-86
BBF19719.1|2707183_2709991_-|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	90.9	0.0e+00
BBF19720.1|2709977_2710214_-|tail	phage tail protein	tail	A0A0A7NQ96	Enterobacteria_phage	94.1	4.3e-21
BBF19721.1|2710141_2710516_-|tail	phage tail protein	tail	A0A0A7NPZ0	Enterobacteria_phage	73.2	9.0e-37
BBF19722.1|2710571_2711084_-|tail	tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	99.4	2.1e-92
BBF19723.1|2711083_2712268_-|tail	tail sheath protein	tail	A0A0A7NV69	Enterobacteria_phage	99.7	1.5e-226
BBF19724.1|2712425_2713535_+|tail	phage tail protein	tail	A0A0A7NQ97	Enterobacteria_phage	97.0	1.0e-200
BBF19725.1|2713885_2715469_+	putative uncharacterized protein	NA	E5E3X3	Burkholderia_phage	54.9	2.9e-161
BBF19726.1|2716177_2716318_+	prophage host toxic membrane protein	NA	A0A0A7NPZ4	Enterobacteria_phage	97.8	1.5e-18
BBF19727.1|2716624_2716924_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
2716583:2716607	attR	AAAGAAAAAAGGCCGCAGAGCGGCC	NA	NA	NA	NA
BBF19728.1|2716928_2719316_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
BBF19729.1|2719330_2720314_-|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.1e-33
BBF19730.1|2720764_2721121_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
BBF19731.1|2721173_2721371_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
BBF19732.1|2721467_2721902_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	6.1e-13
BBF19733.1|2722013_2723942_-|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	37.1	1.6e-129
>prophage 10
AP018784	Escherichia coli SK1144, complete genome	5029244	2803831	2858652	5029244	protease,transposase	Bacillus_phage(16.67%)	56	NA	NA
BBF19815.1|2803831_2804527_-|protease	glycoprotease	protease	NA	NA	NA	NA
BBF19816.1|2804584_2806495_-	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	32.2	1.7e-91
BBF19817.1|2806623_2806971_+	endoribonuclease L-PSP	NA	NA	NA	NA	NA
BBF19818.1|2807392_2807692_+	uncharacterized protein yoaC	NA	NA	NA	NA	NA
BBF19819.1|2807811_2807991_-	yoaH	NA	NA	NA	NA	NA
BBF19820.1|2808064_2809426_+	aminodeoxychorismate synthase subunit I	NA	S4VT78	Pandoravirus	33.4	1.7e-40
BBF19821.1|2809429_2810008_+	NUDIX hydrolase	NA	NA	NA	NA	NA
BBF19822.1|2810191_2811556_+	L-serine deaminase I	NA	NA	NA	NA	NA
BBF19823.1|2811686_2813285_+	phosphodiesterase	NA	NA	NA	NA	NA
BBF19824.1|2813288_2814845_-	integral membrane protein TerC	NA	A0A0R6PEZ3	Moraxella_phage	45.4	1.7e-41
BBF19825.1|2815308_2816280_+	PTS system mannose-specific EIIAB component	NA	NA	NA	NA	NA
BBF19826.1|2816342_2817143_+	PTS system mannose-specific transporter subunit IIC	NA	NA	NA	NA	NA
BBF19827.1|2817155_2818007_+	mannose permease IID component	NA	NA	NA	NA	NA
BBF19828.1|2818061_2818520_+	membrane protein	NA	NA	NA	NA	NA
BBF19829.1|2818948_2819515_+	inner membrane protein	NA	NA	NA	NA	NA
BBF19830.1|2819511_2820321_-	23S rRNA methyltransferase A	NA	NA	NA	NA	NA
BBF19831.1|2820486_2820696_-	cold shock-like protein CspC	NA	A0A1W6JNX5	Morganella_phage	78.1	1.6e-22
BBF19832.1|2821521_2821809_-	yebO protein	NA	NA	NA	NA	NA
BBF19833.1|2822185_2822425_+	yobH protein	NA	NA	NA	NA	NA
BBF19834.1|2822568_2823360_-	transcriptional regulator protein	NA	NA	NA	NA	NA
BBF19835.1|2823536_2824910_+	transporter	NA	NA	NA	NA	NA
BBF19836.1|2824955_2825837_-|protease	protease htpX	protease	NA	NA	NA	NA
BBF19837.1|2826028_2828077_-|protease	carboxy-terminal protease	protease	A0A0R6PIZ1	Moraxella_phage	33.5	6.8e-86
BBF19838.1|2828096_2828795_-	ProP osmoprotactant transporter activator protein	NA	NA	NA	NA	NA
BBF19839.1|2828891_2829389_-	GAF domain-containing protein	NA	NA	NA	NA	NA
BBF19840.1|2829563_2830802_+	inner membrane protein	NA	NA	NA	NA	NA
BBF19841.1|2830770_2833404_+	mce-like protein	NA	NA	NA	NA	NA
BBF19842.1|2833477_2834923_+	rRNA cytosine-C5-methyltransferase	NA	NA	NA	NA	NA
BBF19843.1|2835039_2835276_+	hypothetical protein	NA	NA	NA	NA	NA
BBF19844.1|2835296_2835572_+	hypothetical protein	NA	NA	NA	NA	NA
BBF19845.1|2835572_2835983_-	serine/threonine protein phosphatase	NA	Q71TJ1	Escherichia_phage	43.2	2.1e-26
BBF19846.1|2836623_2836965_-	yebY protein	NA	NA	NA	NA	NA
BBF19847.1|2836977_2837850_-	copper resistance D domain-containing protein	NA	NA	NA	NA	NA
BBF19848.1|2837853_2838228_-	protein yobA precursor	NA	NA	NA	NA	NA
BBF19849.1|2838366_2838597_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	61.8	1.3e-14
BBF19850.1|2838698_2839355_+	hydrolase	NA	NA	NA	NA	NA
BBF19851.1|2839378_2840041_+	exodeoxyribonuclease 10	NA	Q6UAU3	Klebsiella_phage	41.6	2.0e-07
BBF19852.1|2840037_2842098_-|protease	protease II	protease	NA	NA	NA	NA
BBF19853.1|2842306_2842966_-	inner membrane protein	NA	NA	NA	NA	NA
BBF19854.1|2843292_2843649_-	yebF protein	NA	NA	NA	NA	NA
BBF19855.1|2843715_2844006_-	DNA damage-inducible protein YebG	NA	NA	NA	NA	NA
BBF19856.1|2844139_2845318_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
BBF19857.1|2845373_2846015_-	4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase	NA	NA	NA	NA	NA
BBF19858.1|2846051_2847863_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
BBF19859.1|2847825_2847984_+	putative uncharacterized protein	NA	NA	NA	NA	NA
BBF19860.1|2848097_2849573_-	glucose-6-phosphate 1-dehydrogenase	NA	H6WFS4	Cyanophage	37.5	4.4e-79
BBF19861.1|2849738_2849888_-	predicted protein	NA	NA	NA	NA	NA
BBF19862.1|2849910_2850780_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
BBF19863.1|2850907_2852350_+	pyruvate kinase	NA	NA	NA	NA	NA
BBF19864.1|2852481_2853453_-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA	NA
BBF19865.1|2853571_2854894_-	peptidase	NA	A8ATH6	Listeria_phage	40.9	1.2e-14
BBF19866.1|2854909_2855857_-	high-affinity zinc transporter periplasmic component	NA	NA	NA	NA	NA
BBF19867.1|2855920_2856676_+	zinc import ATP-binding protein znuC	NA	G3M9Y6	Bacillus_virus	28.3	1.3e-18
BBF19868.1|2856672_2857458_+	znuB	NA	NA	NA	NA	NA
BBF19869.1|2857651_2858254_-|transposase	transposase ORF B, IS3 family, IS150 group	transposase	A0A1B1P773	Bacillus_phage	56.8	1.7e-61
BBF19870.1|2858478_2858652_-|transposase	transposase ORF A, IS1397	transposase	NA	NA	NA	NA
>prophage 11
AP018784	Escherichia coli SK1144, complete genome	5029244	2863388	2929668	5029244	terminase,tRNA,head,capsid,plate,portal,tail	Escherichia_phage(27.59%)	73	NA	NA
BBF19877.1|2863388_2865161_-|tRNA	aspartyl-tRNA synthetase	tRNA	NA	NA	NA	NA
BBF19878.1|2865470_2866037_+	hydrolase	NA	NA	NA	NA	NA
BBF19879.1|2866033_2866852_+	hypothetical protein	NA	Q859D1	Escherichia_coli_phage	99.2	6.5e-72
BBF19880.1|2866904_2867300_+	inner membrane protein	NA	NA	NA	NA	NA
BBF19881.1|2867340_2868084_+	methyltransferase	NA	F5B419	Synechococcus_phage	30.0	4.6e-24
BBF19882.1|2868080_2869052_+	S-adenosyl-L-methionine-dependent methyltransferase	NA	NA	NA	NA	NA
BBF19883.1|2869087_2871517_-	biotin sulfoxide reductase	NA	NA	NA	NA	NA
BBF19884.1|2871541_2872642_-	cytochrome c-type protein	NA	NA	NA	NA	NA
BBF19885.1|2873029_2873776_-	copper homeostasis protein cutC	NA	NA	NA	NA	NA
BBF19886.1|2873789_2874362_-	metal-binding enzyme	NA	NA	NA	NA	NA
BBF19887.1|2874571_2876305_+|tRNA	arginyl-tRNA synthetase	tRNA	A0A2K9L6Z2	Tupanvirus	33.7	8.8e-87
BBF19888.1|2876357_2876750_-	flagellar protein FlhE	NA	NA	NA	NA	NA
BBF19889.1|2876749_2878828_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA	NA
BBF19890.1|2878820_2879969_-	flagellar biosynthetic protein FlhB	NA	NA	NA	NA	NA
BBF19891.1|2880157_2880802_-	chemotaxis regulator protein	NA	NA	NA	NA	NA
BBF19892.1|2880812_2881202_-	chemotaxis regulator transmitting signal to flagellar motor component	NA	A0A2K9L4R0	Tupanvirus	32.0	1.3e-06
BBF19893.1|2881216_2882266_-	chemotaxis-specific methylesterase	NA	Q56AR1	Bacillus_thuringiensis_phage	32.8	1.0e-05
BBF19894.1|2882268_2883129_-	chemotaxis protein methyltransferase	NA	NA	NA	NA	NA
BBF19895.1|2883419_2885081_-	methyl-accepting chemotaxis protein II	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.3	1.7e-10
BBF19896.1|2885225_2885729_-	purine-binding chemotaxis protein	NA	NA	NA	NA	NA
BBF19897.1|2885749_2887708_-	chemotaxis protein	NA	NA	NA	NA	NA
BBF19898.1|2887718_2888645_-	flagellar motor protein	NA	NA	NA	NA	NA
BBF19899.1|2888641_2889529_-	flagellar motor protein MotA	NA	NA	NA	NA	NA
BBF19900.1|2889655_2890234_-	flagellar transcriptional activator flhC	NA	NA	NA	NA	NA
BBF19901.1|2890236_2890587_-	transcriptional activator flhD	NA	NA	NA	NA	NA
BBF19902.1|2891366_2891795_+	universal stress protein	NA	NA	NA	NA	NA
BBF19903.1|2891801_2893226_-	trehalose-6-phosphate synthase	NA	NA	NA	NA	NA
BBF19904.1|2893200_2894001_-	trehalose-phosphatase	NA	NA	NA	NA	NA
BBF19905.1|2894167_2895154_-	L-arabinose transport system permease protein araH	NA	NA	NA	NA	NA
BBF19906.1|2895168_2896683_-	L-arabinose transport ATP-binding protein	NA	A0A285PWH2	Cedratvirus	29.7	1.3e-12
BBF19907.1|2896752_2897742_-	L-arabinose-binding periplasmic protein	NA	NA	NA	NA	NA
BBF19908.1|2898538_2899042_+	ferritin-like protein	NA	NA	NA	NA	NA
BBF19909.1|2899119_2899371_-	yecJ protein	NA	NA	NA	NA	NA
BBF19910.1|2900330_2900828_+	ferritin-1	NA	NA	NA	NA	NA
BBF19911.1|2900865_2901105_-	yecH protein	NA	NA	NA	NA	NA
BBF19912.1|2901295_2902507_+	tyrosine-specific transport protein	NA	NA	NA	NA	NA
BBF19913.1|2902557_2903223_-	metal-binding protein	NA	NA	NA	NA	NA
BBF19914.1|2903694_2904114_-	uncharacterized protein	NA	G8C7Q7	Escherichia_phage	68.8	1.8e-49
BBF19915.1|2904280_2905324_-	uncharacterized protein	NA	R9TNM7	Vibrio_phage	28.5	2.0e-33
BBF19916.1|2905327_2905540_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19917.1|2905713_2906136_-	uncharacterized protein	NA	E5FFG4	Burkholderia_phage	37.6	1.1e-14
BBF19918.1|2906138_2907779_-	uncharacterized protein	NA	A0A2I7R3J9	Vibrio_phage	29.3	1.2e-19
BBF19919.1|2907887_2908169_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19920.1|2908181_2908694_-|tail	phage major tail tube protein	tail	NA	NA	NA	NA
BBF19921.1|2908711_2910214_-|tail	major tail sheath protein	tail	R9TMQ0	Vibrio_phage	33.5	5.5e-69
BBF19922.1|2910210_2910600_-	uncharacterized protein	NA	A0A2H4EXG4	Aeromonas_phage	30.8	9.4e-05
BBF19923.1|2910599_2911784_-	Uncharacterized protein	NA	J9QDX3	Clostridium_phage	35.2	2.5e-16
BBF19924.1|2911776_2912403_-|tail	phage tail protein I	tail	A0A193GYD1	Enterobacter_phage	38.8	2.0e-25
BBF19925.1|2912405_2913326_-|plate	baseplate assembly protein J	plate	D5LGZ3	Escherichia_phage	47.8	8.3e-68
BBF19926.1|2913322_2913655_-|plate	baseplate assembly protein W	plate	Q8H9N4	Vibrio_phage	51.1	1.2e-19
BBF19927.1|2913666_2914569_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
BBF19928.1|2914549_2915086_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19929.1|2915082_2915763_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19930.1|2915794_2916175_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19931.1|2916171_2916591_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19932.1|2916625_2917660_-|capsid	phage major capsid protein E	capsid	A0A2I6TCE5	Escherichia_phage	56.5	6.6e-106
BBF19933.1|2917718_2918048_-|head	bacteriophage lambda head decoration protein D	head	A0A2R9YJN3	Escherichia_phage	39.5	2.0e-08
BBF19934.1|2918047_2919208_-	S49 family peptidase	NA	A0A2I6TC87	Escherichia_phage	54.0	7.5e-90
BBF19935.1|2919354_2920929_-|portal	portal protein	portal	E4WL21	Enterobacteria_phage	64.0	8.6e-190
BBF19936.1|2920925_2921159_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19937.1|2921158_2923021_-|terminase	phage terminase large subunit gpA	terminase	A0A1I9KF19	Aeromonas_phage	53.2	1.1e-191
BBF19938.1|2923007_2923574_-	uncharacterized protein	NA	A0A1I9KFT4	Aeromonas_phage	46.2	2.9e-31
BBF19939.1|2923942_2924188_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19940.1|2924449_2924929_-	TIGR02594 family protein	NA	A0A222YWL8	Escherichia_phage	68.8	4.6e-62
BBF19941.1|2924928_2925201_-	uncharacterized protein	NA	A0A0A0YPY6	Escherichia_phage	42.9	9.8e-09
BBF19942.1|2925200_2925584_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19943.1|2925696_2926368_-	phage antitermination protein Q	NA	Q7Y3X2	Yersinia_phage	33.5	1.9e-16
BBF19944.1|2926367_2926661_-	bacteriophage protein	NA	A0A0U2KD41	Escherichia_phage	70.5	3.3e-34
BBF19945.1|2926657_2927254_-	gifsy-2 prophage protein	NA	H9C173	Pectobacterium_phage	64.1	1.5e-70
BBF19946.1|2927331_2927511_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19947.1|2927662_2928304_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19948.1|2928547_2928781_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19949.1|2929179_2929668_+	uncharacterized protein	NA	A0A142KB62	Gordonia_phage	42.7	6.4e-27
>prophage 12
AP018784	Escherichia coli SK1144, complete genome	5029244	2933730	2945899	5029244	integrase	Pectobacterium_phage(66.67%)	18	2943760:2943774	2950512:2950526
BBF19954.1|2933730_2934519_-	antirepressor	NA	A0A0P0ZC44	Stx2-converting_phage	69.8	1.1e-39
BBF19955.1|2934791_2935013_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19956.1|2935200_2935425_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19957.1|2935421_2935733_-	uncharacterized protein	NA	A0A222YXX1	Escherichia_phage	65.7	1.2e-34
BBF19958.1|2935729_2935966_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19959.1|2935967_2936378_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF19960.1|2936416_2937832_-	putative replication protein P	NA	H9C165	Pectobacterium_phage	66.7	6.6e-173
BBF19961.1|2937821_2938577_-	putative replication protein	NA	H9C164	Pectobacterium_phage	68.5	2.4e-41
BBF19962.1|2938573_2938798_-	adenylosuccinate synthase	NA	H9C163	Pectobacterium_phage	54.1	6.1e-17
BBF19963.1|2938837_2939314_-	uncharacterized protein	NA	H9C162	Pectobacterium_phage	48.6	1.9e-23
BBF19964.1|2939372_2939603_-	antirepressor protein Cro	NA	H6WRX5	Salmonella_phage	63.2	1.5e-21
BBF19965.1|2939722_2940115_+	uncharacterized protein	NA	A0A1B5FPF4	Escherichia_phage	49.1	6.3e-09
BBF19966.1|2941125_2941446_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19967.1|2941476_2943693_+	uncharacterized protein	NA	H9C157	Pectobacterium_phage	35.6	4.7e-101
BBF19968.1|2943689_2944259_+	Gp157 family protein	NA	H9C156	Pectobacterium_phage	49.2	6.1e-37
2943760:2943774	attL	TGACGCCAGAGATGA	NA	NA	NA	NA
BBF19969.1|2944258_2944441_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF19970.1|2944650_2944914_+	uncharacterized protein	NA	H9C153	Pectobacterium_phage	38.0	1.2e-06
BBF19971.1|2944918_2945899_+|integrase	integrase	integrase	H9C152	Pectobacterium_phage	63.5	2.1e-122
2950512:2950526	attR	TCATCTCTGGCGTCA	NA	NA	NA	NA
>prophage 13
AP018784	Escherichia coli SK1144, complete genome	5029244	2987482	3071867	5029244	integrase,holin,transposase	Bacillus_phage(36.36%)	58	2998447:2998462	3075917:3075932
BBF20021.1|2987482_2987659_+|holin	glucose-methanol-choline oxidoreductase	holin	NA	NA	NA	NA
BBF20022.1|2988376_2989492_+	outer membrane protein F	NA	Q1MVN1	Enterobacteria_phage	47.2	1.4e-90
BBF20023.1|2990084_2990936_+	chaperone protein HchA	NA	NA	NA	NA	NA
BBF20024.1|2991043_2992402_-	sensory kinase in two-component regulatory system with YedW	NA	NA	NA	NA	NA
BBF20025.1|2992401_2993184_-	DNA-binding response regulator in two-component system with YedV	NA	W8CYM9	Bacillus_phage	35.2	6.2e-32
BBF20026.1|2993205_2993619_+	hydroxyisourate hydrolase	NA	NA	NA	NA	NA
BBF20027.1|2993727_2994732_+	membrane-anchored, periplasmic TMAO, DMSO reductase	NA	NA	NA	NA	NA
BBF20028.1|2994732_2995368_+	membrane protein yedZ	NA	NA	NA	NA	NA
BBF20029.1|2995451_2996054_-|transposase	transposase ORF B, IS3 family, IS150 group	transposase	A0A1B1P773	Bacillus_phage	56.8	1.7e-61
BBF20030.1|2996278_2996452_-|transposase	transposase ORF A, IS1397	transposase	NA	NA	NA	NA
BBF20031.1|2997060_2997711_+	YodA domain-containing protein	NA	NA	NA	NA	NA
2998447:2998462	attL	GTTCAGCCGCTCCGGC	NA	NA	NA	NA
BBF20032.1|2998677_2999361_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
BBF20033.1|2999698_3000961_+|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	38.5	2.6e-72
BBF20034.1|3001154_3002459_-	salicylate synthase Irp9	NA	NA	NA	NA	NA
BBF20035.1|3002486_3003767_-	putative cytoplasmic transmembrane protein	NA	NA	NA	NA	NA
BBF20036.1|3003759_3005562_-	inner membrane ABC-transporter YbtQ	NA	W8CYL7	Bacillus_phage	26.5	6.1e-22
BBF20037.1|3005548_3007261_-	yersiniabactin-iron ABC transporter permease and ATP-binding components	NA	W8CYL7	Bacillus_phage	27.0	1.8e-31
BBF20038.1|3007517_3008477_+	transcriptional regulator	NA	NA	NA	NA	NA
BBF20039.1|3008667_3014775_+	yersiniabactin biosynthetic protein	NA	A0A2K9L3I8	Tupanvirus	27.3	1.8e-33
BBF20040.1|3014862_3024354_+	yersiniabactin biosynthetic protein	NA	D0R7J2	Paenibacillus_phage	36.8	1.6e-49
BBF20041.1|3024350_3025451_+	thiazolinyl-S-HMWP1 reductase YbtU	NA	NA	NA	NA	NA
BBF20042.1|3025447_3026251_+	yersiniabactin biosynthetic protein	NA	NA	NA	NA	NA
BBF20043.1|3026254_3027832_+	2,3-dihydroxybenzoate-amp ligase protein	NA	NA	NA	NA	NA
BBF20044.1|3027962_3029984_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
BBF20045.1|3030633_3031383_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF20046.1|3031515_3032778_+	adhesin	NA	NA	NA	NA	NA
BBF20047.1|3032997_3033474_+	adhesin	NA	NA	NA	NA	NA
BBF20048.1|3033601_3034654_-	ADP-heptose:LPS heptosyl transferase	NA	NA	NA	NA	NA
BBF20049.1|3034968_3036285_+	shikimate transporter	NA	NA	NA	NA	NA
BBF20050.1|3036386_3037841_+	AMP nucleosidase	NA	NA	NA	NA	NA
BBF20051.1|3038183_3038900_+	yeeN	NA	NA	NA	NA	NA
BBF20052.1|3039529_3040912_-	multidrug efflux system YeeO	NA	NA	NA	NA	NA
BBF20053.1|3041290_3042241_-	HTH-type transcriptional regulator cbl	NA	NA	NA	NA	NA
BBF20054.1|3042342_3043260_-	nitrogen assimilation regulatory protein	NA	NA	NA	NA	NA
BBF20055.1|3043717_3044653_-	L,D-transpeptidase linking Lpp to murein	NA	NA	NA	NA	NA
BBF20056.1|3044714_3045794_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
BBF20057.1|3045805_3046549_-	cobalamin synthase	NA	NA	NA	NA	NA
BBF20058.1|3046545_3047091_-	cobalamin biosynthesis protein cobU	NA	NA	NA	NA	NA
BBF20059.1|3048888_3050910_+	outer membrane receptor for iron compound or colicin	NA	NA	NA	NA	NA
BBF20060.1|3051280_3051925_-	ParB-like nuclease	NA	A0A0F7L444	uncultured_marine_virus	50.5	8.2e-54
BBF20061.1|3051909_3052887_-	phosphoadenosine phosphosulfate reductase	NA	A0A068F1U8	Mycobacterium_phage	33.3	1.9e-49
BBF20062.1|3054184_3054838_+	LmbE-like protein	NA	NA	NA	NA	NA
BBF20063.1|3054851_3056048_+	glycosyl transferase family protein	NA	NA	NA	NA	NA
BBF20064.1|3056082_3056607_+	transferase	NA	NA	NA	NA	NA
BBF20065.1|3056608_3057382_+	outer membrane protein	NA	NA	NA	NA	NA
BBF20066.1|3058383_3059598_+	PfkB family DNA-binding protein/kinase	NA	NA	NA	NA	NA
BBF20067.1|3059611_3060370_+	cytoplasmic protein	NA	NA	NA	NA	NA
BBF20068.1|3060423_3061389_+	putative inner membrane protein	NA	NA	NA	NA	NA
BBF20069.1|3061391_3062426_+	phosphotriesterase	NA	NA	NA	NA	NA
BBF20070.1|3064740_3065151_-	predicted protein	NA	NA	NA	NA	NA
BBF20071.1|3065138_3065540_-	Aec60	NA	NA	NA	NA	NA
BBF20072.1|3065705_3066275_-	Aec61	NA	NA	NA	NA	NA
BBF20073.1|3066474_3066675_+	predicted protein	NA	NA	NA	NA	NA
BBF20074.1|3067389_3067623_-	uncharacterized protein	NA	NA	NA	NA	NA
BBF20075.1|3067854_3069051_+|transposase	transposase	transposase	NA	NA	NA	NA
BBF20076.1|3069246_3069453_+	regulatory protein	NA	NA	NA	NA	NA
BBF20077.1|3069546_3070149_+	Aec62	NA	NA	NA	NA	NA
BBF20078.1|3071174_3071867_-|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	88.4	1.7e-118
3075917:3075932	attR	GCCGGAGCGGCTGAAC	NA	NA	NA	NA
>prophage 14
AP018784	Escherichia coli SK1144, complete genome	5029244	3122173	3128476	5029244		Enterobacteria_phage(66.67%)	6	NA	NA
BBF20131.1|3122173_3122716_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	61.8	6.0e-50
BBF20132.1|3122720_3123599_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	64.5	6.6e-107
BBF20133.1|3123656_3124556_-	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	34.8	1.7e-28
BBF20134.1|3124555_3125710_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	3.6e-100
BBF20135.1|3126013_3126907_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.0	3.0e-46
BBF20136.1|3127081_3128476_-	colanic acid biosynthesis protein	NA	A0A291LBB9	Klebsiella_phage	33.0	6.3e-19
>prophage 15
AP018784	Escherichia coli SK1144, complete genome	5029244	3222653	3232098	5029244	transposase	Enterobacteria_phage(85.71%)	9	NA	NA
BBF20208.1|3222653_3223790_+	VWA containing CoxE family protein	NA	Q9EYF7	Enterobacteria_phage	96.7	6.1e-161
BBF20209.1|3223786_3225790_+|transposase	transposase	transposase	Q9EYF6	Enterobacteria_phage	95.7	0.0e+00
BBF20210.1|3225914_3226376_+	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	99.3	3.2e-76
BBF20211.1|3226416_3226887_-	yehS protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
BBF20212.1|3226933_3227653_-	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
BBF20213.1|3227649_3229350_-	sensory kinase in two-component system with YehT	NA	B6DZC2	Enterobacteria_phage	99.5	2.4e-307
BBF20214.1|3229556_3230288_+	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	98.5	6.3e-111
BBF20215.1|3230435_3231167_-	inner membrane ABC transporter protein	NA	NA	NA	NA	NA
BBF20216.1|3231171_3232098_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.3e-23
>prophage 16
AP018784	Escherichia coli SK1144, complete genome	5029244	3646445	3652770	5029244		Mycoplasma_phage(16.67%)	9	NA	NA
BBF20573.1|3646445_3647729_-	aminopeptidase B	NA	Q6GYZ8	Mycoplasma_phage	37.8	2.9e-34
BBF20574.1|3647787_3647988_-	protein iscX	NA	NA	NA	NA	NA
BBF20575.1|3647999_3648335_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
BBF20576.1|3648336_3648777_-	chaperone HscA	NA	F2Y2E1	Organic_Lake_phycodnavirus	43.8	2.1e-05
BBF20577.1|3648773_3650174_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.7	3.4e-89
BBF20578.1|3650190_3650706_-	DnaJ-like molecular chaperone specific for IscU	NA	NA	NA	NA	NA
BBF20579.1|3650801_3651125_-	iron-sulfur cluster assembly protein	NA	A0A2H4N7N5	Lake_Baikal_phage	48.6	5.4e-22
BBF20580.1|3651141_3651528_-	scaffold protein	NA	A0A218MKD1	uncultured_virus	78.9	1.4e-53
BBF20581.1|3651555_3652770_-	cysteine desulfurase	NA	A0A1X7C038	Faustovirus	31.8	8.8e-33
>prophage 17
AP018784	Escherichia coli SK1144, complete genome	5029244	3810009	3817149	5029244		Escherichia_phage(83.33%)	6	NA	NA
BBF20733.1|3810009_3812571_+	DNA mismatch repair protein mutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.8	1.6e-31
BBF20734.1|3812676_3813333_+	serine/threonine protein phosphatase 2	NA	A0A077SLQ6	Escherichia_phage	46.1	3.3e-50
BBF20735.1|3813383_3814151_-	HTH-type transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.4	9.7e-70
BBF20736.1|3814346_3815255_+	NAD binding domain-containing protein	NA	A0A077SLF7	Escherichia_phage	76.2	1.9e-117
BBF20737.1|3815251_3816514_+	YgbK domain protein	NA	A0A077SLJ7	Escherichia_phage	61.4	2.2e-135
BBF20738.1|3816510_3817149_+	aldolase	NA	A0A077SK32	Escherichia_phage	74.5	1.4e-82
>prophage 18
AP018784	Escherichia coli SK1144, complete genome	5029244	4059785	4147037	5029244	protease,integrase,tRNA,transposase	Escherichia_phage(21.74%)	82	4086099:4086113	4153884:4153905
BBF20946.1|4059785_4060694_+|protease	SPFH domain containing serineprotease	protease	A0A2C9D0H9	Yersinia_phage	55.4	9.7e-53
BBF20947.1|4060912_4062904_-	transketolase	NA	NA	NA	NA	NA
BBF20948.1|4063181_4063940_+	peptidase	NA	NA	NA	NA	NA
BBF20949.1|4064143_4065064_-	agmatinase	NA	NA	NA	NA	NA
BBF20950.1|4065199_4065931_-	lipoprotein	NA	NA	NA	NA	NA
BBF20951.1|4066076_4067975_-	arginine decarboxylase	NA	NA	NA	NA	NA
BBF20952.1|4068847_4070002_+	S-adenosylmethionine synthetase	NA	A0A2H4PQS6	Staphylococcus_phage	63.2	4.0e-128
BBF20953.1|4070437_4071832_+	sugar transporter	NA	NA	NA	NA	NA
BBF20954.1|4071950_4072406_+	protein SprT	NA	NA	NA	NA	NA
BBF20955.1|4072500_4073208_+	DNA-specific endonuclease I	NA	NA	NA	NA	NA
BBF20956.1|4073287_4074019_+	16S ribosomal RNA methyltransferase RsmE	NA	NA	NA	NA	NA
BBF20957.1|4074031_4074982_+	glutathione synthetase	NA	NA	NA	NA	NA
BBF20958.1|4075090_4075654_+	yqgE	NA	NA	NA	NA	NA
BBF20959.1|4075653_4076070_+	Holliday junction resolvase-like protein	NA	NA	NA	NA	NA
BBF20960.1|4076243_4077224_-	transporter	NA	NA	NA	NA	NA
BBF20961.1|4077241_4077946_+	alanine racemase domain protein	NA	NA	NA	NA	NA
BBF20962.1|4077963_4078530_+	inner membrane protein	NA	NA	NA	NA	NA
BBF20963.1|4078526_4078817_+	hypothetical protein	NA	NA	NA	NA	NA
BBF20964.1|4078824_4079418_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA	NA
BBF20965.1|4079410_4080547_+	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
BBF20966.1|4080615_4081623_-	alpha helix chain	NA	NA	NA	NA	NA
BBF20967.1|4081739_4082786_-	L-asparaginase II	NA	NA	NA	NA	NA
BBF20968.1|4082961_4083681_-	yggN protein	NA	NA	NA	NA	NA
BBF20969.1|4083864_4084191_-	yggL protein	NA	NA	NA	NA	NA
BBF20970.1|4084190_4084910_-|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
BBF20971.1|4085070_4086123_+	adenine DNA glycosylase	NA	NA	NA	NA	NA
4086099:4086113	attL	GTTACGCACTGGCGC	NA	NA	NA	NA
BBF20972.1|4086150_4086426_+	Fe(2+)-trafficking protein	NA	NA	NA	NA	NA
4086099:4086113	attL	GTTACGCACTGGCGC	NA	NA	NA	NA
BBF20973.1|4086487_4087570_+	membrane-bound lytic murein transglycosylase C	NA	NA	NA	NA	NA
BBF20974.1|4087771_4089028_+	nucleoside permease nupG	NA	NA	NA	NA	NA
BBF20975.1|4089076_4091203_-	ornithine decarboxylase	NA	NA	NA	NA	NA
BBF20976.1|4091610_4092318_+	membrane protein YqgA	NA	NA	NA	NA	NA
BBF20977.1|4092696_4093962_+|integrase	prophage P4 integrase	integrase	Q7M297	Enterobacteria_phage	38.1	2.1e-77
BBF20978.1|4094187_4095261_+	SHI-2 pathogenicity island protein	NA	NA	NA	NA	NA
4094697:4094711	attR	GTTACGCACTGGCGC	NA	NA	NA	NA
BBF20979.1|4095790_4096066_+	IS1 protein InsA	NA	Q71TE9	Escherichia_phage	98.9	2.0e-46
4094697:4094711	attR	GTTACGCACTGGCGC	NA	NA	NA	NA
BBF20980.1|4096110_4096488_+|transposase	InsAB' transposase	transposase	Q71TF0	Escherichia_phage	99.2	1.1e-66
BBF20981.1|4096810_4097311_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
BBF20982.1|4097777_4098155_-|transposase	InsAB' transposase	transposase	Q71TF0	Escherichia_phage	99.2	1.1e-66
BBF20983.1|4098199_4098475_-	IS1 protein InsA	NA	Q71TE9	Escherichia_phage	98.9	2.0e-46
BBF20984.1|4098503_4098773_-	major pilin subunit PapA	NA	NA	NA	NA	NA
BBF20985.1|4098769_4099072_-	PapA protein	NA	NA	NA	NA	NA
BBF20986.1|4100009_4100231_+	pap operon regulatory protein PapI	NA	NA	NA	NA	NA
BBF20987.1|4100881_4101682_-|transposase	transposase	transposase	A0A0N7C1X7	Escherichia_phage	97.0	2.3e-146
BBF20988.1|4101681_4102008_-|transposase	IS629, transposase orfA	transposase	Q6H9S4	Enterobacteria_phage	99.1	1.3e-55
BBF20989.1|4102747_4103494_-|transposase	transposase	transposase	NA	NA	NA	NA
BBF20990.1|4104045_4104306_+	predicted protein	NA	NA	NA	NA	NA
BBF20991.1|4104347_4104908_+	transcriptional regulator	NA	NA	NA	NA	NA
BBF20992.1|4104947_4105376_+	putative uncharacterized protein	NA	NA	NA	NA	NA
BBF20993.1|4106084_4106450_+	insertion sequence 2 OrfA protein	NA	Q76S41	Shigella_phage	100.0	9.6e-60
BBF20994.1|4106656_4107313_+|transposase	insertion element IS2 transposase InsD	transposase	Q9ZXG3	Shigella_phage	96.8	5.8e-124
BBF20995.1|4107425_4108619_-	ShiF	NA	NA	NA	NA	NA
BBF20996.1|4108754_4110479_+	IucA	NA	NA	NA	NA	NA
BBF20997.1|4110479_4111427_+	IucB	NA	NA	NA	NA	NA
BBF20998.1|4111426_4113169_+	IucC	NA	NA	NA	NA	NA
BBF20999.1|4113165_4114443_+	aerobactin siderophore L-lysine 6-monooxygenase IucD	NA	NA	NA	NA	NA
BBF21000.1|4114524_4116726_+	aerobactin siderophore ferric receptor protein IutA	NA	NA	NA	NA	NA
BBF21001.1|4117669_4121557_+|protease	serine protease sat precursor	protease	Q9LA58	Enterobacterial_phage	39.0	1.2e-227
BBF21002.1|4121828_4122197_+	IS600 ORF1	NA	NA	NA	NA	NA
BBF21003.1|4123038_4123305_+|integrase	integrase	integrase	Q9MBM9	Staphylococcus_prophage	56.1	6.2e-16
BBF21004.1|4123389_4124208_+|transposase	ISSd1, transposase orfA/B, fusion	transposase	A0A0P0I4A4	Acinetobacter_phage	45.2	1.2e-65
BBF21005.1|4124219_4124675_+	predicted protein	NA	NA	NA	NA	NA
BBF21006.1|4125090_4125552_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
BBF21007.1|4125588_4126128_+|integrase	integrase catalytic region	integrase	NA	NA	NA	NA
BBF21008.1|4126632_4126836_-	L-lactate permease	NA	NA	NA	NA	NA
BBF21009.1|4128085_4128301_-	predicted protein	NA	NA	NA	NA	NA
BBF21010.1|4128304_4128673_-	predicted protein	NA	NA	NA	NA	NA
BBF21011.1|4128963_4129206_-	predicted protein	NA	NA	NA	NA	NA
BBF21012.1|4130067_4132077_-	bifunctional enterobactin receptor/adhesin protein	NA	A0A0P0I887	Acinetobacter_phage	31.5	1.9e-08
BBF21013.1|4132657_4133314_-|transposase	insertion element IS2 transposase InsD	transposase	Q9ZXG3	Shigella_phage	95.4	3.5e-121
BBF21014.1|4133520_4133886_-	insertion sequence 2 OrfA protein	NA	Q76S41	Shigella_phage	100.0	9.6e-60
BBF21015.1|4134037_4135024_-	phage protein YjhS encoded within prophage CP-933O	NA	Q08JA2	Stx2-converting_phage	57.7	4.0e-108
BBF21016.1|4135123_4135858_+	transcriptional regulator	NA	NA	NA	NA	NA
BBF21017.1|4135893_4136817_-	predicted protein	NA	NA	NA	NA	NA
BBF21018.1|4136878_4137988_-	N-acetylneuraminate epimerase 1	NA	NA	NA	NA	NA
BBF21019.1|4138000_4138711_-	N-acetylneuraminic acid outer membrane channel protein NanC	NA	NA	NA	NA	NA
BBF21020.1|4138756_4139587_-	predicted protein	NA	NA	NA	NA	NA
BBF21021.1|4139590_4141063_-	sialic acid transporter	NA	Q6JIH2	Burkholderia_virus	22.7	2.2e-06
BBF21022.1|4141111_4141987_-	N-acetylmannosamine kinase	NA	NA	NA	NA	NA
BBF21023.1|4142020_4142938_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
BBF21024.1|4143661_4144024_+|transposase	transposase	transposase	Q6H9S5	Enterobacteria_phage	80.3	3.3e-28
BBF21025.1|4144020_4144371_+|transposase	ISCro1 transposase B	transposase	A0A0P0ZBY2	Stx2-converting_phage	62.1	5.4e-36
BBF21026.1|4144401_4145502_+|transposase	IS66 family element, transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	65.9	1.4e-98
BBF21027.1|4145498_4147037_+|transposase	IS66 family element, transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	93.9	1.2e-281
4153884:4153905	attR	CTCCTTCATGTTAATACGCAAC	NA	NA	NA	NA
>prophage 1
AP018785	Escherichia coli SK1144 plasmid pSK1144, nearly complete genome	169561	82085	116217	169561	transposase	Stx2-converting_phage(33.33%)	42	NA	NA
BBF21962.1|82085_82790_+|transposase	IS26 transposase	transposase	A0A077SL39	Escherichia_phage	99.1	5.8e-138
BBF21963.1|82795_83047_+	secreted copper-sensitivity suppressor protein ScsC	NA	NA	NA	NA	NA
BBF21964.1|83036_83543_+	secreted copper-sensitivity suppressor membrane protein ScsD	NA	NA	NA	NA	NA
BBF21965.1|83725_84541_+	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA	NA
BBF21966.1|84833_86774_+	high affinity Fe+2 binding protein permease component	NA	NA	NA	NA	NA
BBF21967.1|86814_87342_+	periplasmic protein p19	NA	NA	NA	NA	NA
BBF21968.1|87445_88825_+	high affinity Fe+2 binding protein membrane component	NA	NA	NA	NA	NA
BBF21969.1|88827_90111_+	high affinity Fe+2 binding protein permease component	NA	NA	NA	NA	NA
BBF21970.1|90100_91231_+	ABC-type antimicrobial peptide transport system	NA	NA	NA	NA	NA
BBF21971.1|91235_91931_+	molybdenum transport ATP-binding protein modC	NA	G9BWD6	Planktothrix_phage	38.9	7.5e-29
BBF21972.1|91917_92403_+	thiol-disulfide isomerase and thioredoxin	NA	NA	NA	NA	NA
BBF21973.1|92427_92913_+	predicted protein	NA	NA	NA	NA	NA
BBF21974.1|93034_93484_+	glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA	NA
BBF21975.1|93458_93779_+	glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA	NA
BBF21976.1|93817_94321_-	group II intron-encoded reverse transcriptase/maturase	NA	A0A077SK28	Escherichia_phage	93.2	6.9e-24
BBF21977.1|94951_95170_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
BBF21978.1|95414_96914_+|transposase	transposase	transposase	NA	NA	NA	NA
BBF21979.1|96910_97666_+	insertion sequence ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	33.9	3.2e-33
BBF21980.1|97807_98134_-|transposase	transposase ORF A, IS629	transposase	Q6H9S4	Enterobacteria_phage	97.2	1.8e-54
BBF21981.1|98198_98465_+|transposase	IS1294 transposase	transposase	NA	NA	NA	NA
BBF21982.1|98987_100100_-	enterotoxin TieB protein	NA	NA	NA	NA	NA
BBF21983.1|100231_102493_-	TonB-dependent colicin J protein CjrC	NA	NA	NA	NA	NA
BBF21984.1|102661_103438_-	TonB-dependent colicin J protein CjrB	NA	NA	NA	NA	NA
BBF21985.1|103445_104297_-	CjrA	NA	NA	NA	NA	NA
BBF21986.1|104652_105219_-	replication protein	NA	NA	NA	NA	NA
BBF21987.1|105795_105978_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF21988.1|106563_106773_+	uncharacterized protein	NA	NA	NA	NA	NA
BBF21989.1|106790_107126_-	colicin Ia immunity protein	NA	NA	NA	NA	NA
BBF21990.1|107254_107602_+	hypothetical protein	NA	NA	NA	NA	NA
BBF21991.1|107621_108131_-	YdeA	NA	NA	NA	NA	NA
BBF21992.1|108127_108388_-	YdfA	NA	NA	NA	NA	NA
BBF21993.1|108489_108816_+	IS629 ORF1	NA	Q6H9S4	Enterobacteria_phage	99.1	4.9e-55
BBF21994.1|109037_109256_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
BBF21995.1|109886_111410_+	group II intron-encoded reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	6.2e-44
BBF21996.1|111526_111883_+|transposase	transposase ORF B, IS629	transposase	Q6H9S3	Enterobacteria_phage	99.0	3.6e-51
BBF21997.1|111911_112316_+	ISSfl3 protein	NA	A0A0P0ZCV4	Stx2-converting_phage	100.0	3.0e-70
BBF21998.1|112312_112660_+	IS66 family element, orf2	NA	A0A0P0ZDM8	Stx2-converting_phage	100.0	2.6e-62
BBF21999.1|112708_112966_+|transposase	IS66 family element, transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	97.4	2.3e-31
BBF22000.1|112967_113726_+|transposase	IS66 family element, transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	96.9	9.1e-129
BBF22001.1|113739_114762_+|transposase	transposase for insertion sequence	transposase	A0A2L1IVA1	Escherichia_phage	99.7	3.2e-201
BBF22002.1|114761_115541_+|transposase	transposase/IS protein	transposase	A0A2L1IVB6	Escherichia_phage	100.0	1.5e-139
BBF22003.1|115698_116217_+|transposase	IS66 family element, transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	99.4	6.5e-94
>prophage 2
AP018785	Escherichia coli SK1144 plasmid pSK1144, nearly complete genome	169561	129878	135293	169561		Escherichia_phage(28.57%)	9	NA	NA
BBF22015.1|129878_130688_+	resolvase	NA	I3WFA4	Macacine_betaherpesvirus	95.5	7.8e-54
BBF22016.1|130825_131101_-	predicted protein	NA	NA	NA	NA	NA
BBF22017.1|131094_131739_-	putative partitioning protein	NA	A0A222YXS3	Escherichia_phage	43.5	8.8e-40
BBF22018.1|131967_132939_+	stable plasmid inheritance protein StbA	NA	A0A222YXF2	Escherichia_phage	42.9	9.7e-67
BBF22019.1|132943_133336_+	stable plasmid inheritance protein StbB	NA	NA	NA	NA	NA
BBF22020.1|133340_133589_-	DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	60.3	5.0e-20
BBF22021.1|133618_134611_-	DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	59.8	7.3e-102
BBF22022.1|134610_135048_-	ImpA UV protection protein	NA	A0A1W6JNS2	Morganella_phage	47.6	1.1e-25
BBF22023.1|135044_135293_-	ImpC	NA	Q2A098	Sodalis_phage	48.0	1.2e-13
