assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003966795.1_ASM396679v1	AP018488	Escherichia coli O157:H7 pv15-279 DNA, complete genome	1	71473-71607	1	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|249aa|up_4|AP018488.1_63442_64189_+,NA|37aa|down_7|AP018488.1_80648_80759_+	NA|274aa|up_9|AP018488.1_56577_57399_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|AP018488.1_57395_58385_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|AP018488.1_58384_59671_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|AP018488.1_59723_62078_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|279aa|up_5|AP018488.1_62311_63148_+	PRK09430, djlA, co-chaperone DjlA	NA|249aa|up_4|AP018488.1_63442_64189_+	NA	NA|220aa|up_3|AP018488.1_64596_65256_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|AP018488.1_65267_68174_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|AP018488.1_68337_70689_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|AP018488.1_70763_71459_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|AP018488.1_71658_73161_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|AP018488.1_73171_74872_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|AP018488.1_75210_76089_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|AP018488.1_76174_76939_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|AP018488.1_77025_77724_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|AP018488.1_77707_79318_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|AP018488.1_79293_80277_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|37aa|down_7|AP018488.1_80648_80759_+	NA	NA|109aa|down_8|AP018488.1_80810_81137_+	pfam01527, HTH_Tnp_1, Transposase	NA|296aa|down_9|AP018488.1_81136_82024_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed
GCA_003966795.1_ASM396679v1	AP018488	Escherichia coli O157:H7 pv15-279 DNA, complete genome	2	3346367-3346459	2	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCGCATCACGTATTTGCACACTT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|116aa|up_1|AP018488.1_3345281_3345629_-,NA|152aa|down_0|AP018488.1_3346556_3347012_+,NA|59aa|down_1|AP018488.1_3347386_3347563_+,NA|104aa|down_3|AP018488.1_3348056_3348368_+,NA|141aa|down_4|AP018488.1_3348386_3348809_+,NA|112aa|down_5|AP018488.1_3348814_3349150_+,NA|94aa|down_6|AP018488.1_3349280_3349562_+,NA|107aa|down_7|AP018488.1_3349574_3349895_+,NA|141aa|down_8|AP018488.1_3349990_3350413_+,NA|197aa|down_9|AP018488.1_3350402_3350993_+	NA|375aa|up_9|AP018488.1_3336763_3337888_-	PRK10130, PRK10130, HTH-type transcriptional regulator EutR	NA|167aa|up_8|AP018488.1_3337933_3338434_-	PRK15466, PRK15466, ethanolamine utilization microcompartment protein EutK	NA|220aa|up_7|AP018488.1_3338446_3339106_-	PRK15405, PRK15405, ethanolamine utilization microcompartment protein EutL	NA|296aa|up_6|AP018488.1_3339115_3340003_-	COG4302, EutC, Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]	NA|109aa|up_5|AP018488.1_3340729_3341056_+	pfam01527, HTH_Tnp_1, Transposase	NA|296aa|up_4|AP018488.1_3341055_3341943_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|403aa|up_3|AP018488.1_3342885_3344094_+	PRK09692, PRK09692, integrase; Provisional	NA|172aa|up_2|AP018488.1_3344779_3345295_-	pfam13957, YafO_toxin, Toxin YafO, type II toxin-antitoxin system	NA|116aa|up_1|AP018488.1_3345281_3345629_-	NA	NA|76aa|up_0|AP018488.1_3345901_3346129_+	pfam13730, HTH_36, Helix-turn-helix domain	NA|152aa|down_0|AP018488.1_3346556_3347012_+	NA	NA|59aa|down_1|AP018488.1_3347386_3347563_+	NA	NA|132aa|down_2|AP018488.1_3347593_3347989_+	pfam13392, HNH_3, HNH endonuclease	NA|104aa|down_3|AP018488.1_3348056_3348368_+	NA	NA|141aa|down_4|AP018488.1_3348386_3348809_+	NA	NA|112aa|down_5|AP018488.1_3348814_3349150_+	NA	NA|94aa|down_6|AP018488.1_3349280_3349562_+	NA	NA|107aa|down_7|AP018488.1_3349574_3349895_+	NA	NA|141aa|down_8|AP018488.1_3349990_3350413_+	NA	NA|197aa|down_9|AP018488.1_3350402_3350993_+	NA
GCA_003966795.1_ASM396679v1	AP018488	Escherichia coli O157:H7 pv15-279 DNA, complete genome	3	3697483-3697816	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|AP018488.1_3689295_3690057_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|AP018488.1_3690037_3691087_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|AP018488.1_3691083_3691563_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|AP018488.1_3691562_3692273_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|AP018488.1_3692291_3692603_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|AP018488.1_3692796_3693120_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|AP018488.1_3693169_3693775_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|AP018488.1_3693774_3695202_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|AP018488.1_3695203_3696112_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|AP018488.1_3696363_3697401_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|AP018488.1_3697912_3698206_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|AP018488.1_3698202_3699126_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|AP018488.1_3699122_3699773_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|AP018488.1_3699754_3700501_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|AP018488.1_3700511_3701567_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|AP018488.1_3701578_3702115_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|AP018488.1_3702111_3703674_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|AP018488.1_3703771_3706471_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|AP018488.1_3706662_3706815_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|AP018488.1_3707078_3707813_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_003966795.1_ASM396679v1	AP018488	Escherichia coli O157:H7 pv15-279 DNA, complete genome	4	3723508-3723721	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,3,3	3	Unclear	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|600aa|up_9|AP018488.1_3709598_3711398_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_8|AP018488.1_3711713_3712079_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|AP018488.1_3712156_3713428_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|AP018488.1_3713418_3713679_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|AP018488.1_3713695_3714271_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|AP018488.1_3715275_3716055_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|AP018488.1_3717462_3718917_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|AP018488.1_3718986_3719772_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|AP018488.1_3720090_3721368_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|AP018488.1_3721394_3722873_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|AP018488.1_3724060_3724732_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|165aa|down_1|AP018488.1_3725012_3725507_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|AP018488.1_3725520_3726195_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|AP018488.1_3726428_3727577_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|AP018488.1_3727573_3728488_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|AP018488.1_3728547_3729846_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|AP018488.1_3729933_3731571_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|AP018488.1_3731798_3732590_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|AP018488.1_3732660_3732996_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|AP018488.1_3732995_3733244_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCA_003966795.1_ASM396679v1	AP018488	Escherichia coli O157:H7 pv15-279 DNA, complete genome	5	5436465-5436614	5	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|585aa|up_6|AP018488.1_5427612_5429367_+,NA	NA|238aa|up_9|AP018488.1_5425515_5426229_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|AP018488.1_5426299_5426893_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|AP018488.1_5427037_5427490_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|585aa|up_6|AP018488.1_5427612_5429367_+	NA	NA|335aa|up_5|AP018488.1_5429423_5430428_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|AP018488.1_5430589_5431006_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|AP018488.1_5431051_5431555_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|AP018488.1_5431747_5432944_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|AP018488.1_5432998_5435854_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|AP018488.1_5435853_5436297_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|AP018488.1_5436650_5438162_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|360aa|down_1|AP018488.1_5438449_5439529_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|AP018488.1_5439528_5440611_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|AP018488.1_5440771_5442274_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|AP018488.1_5442403_5443423_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|650aa|down_5|AP018488.1_5443793_5445743_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|296aa|down_6|AP018488.1_5446111_5446999_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|down_7|AP018488.1_5446998_5447325_-	pfam01527, HTH_Tnp_1, Transposase	NA|122aa|down_8|AP018488.1_5447350_5447716_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|111aa|down_9|AP018488.1_5447837_5448170_-	pfam07978, NIPSNAP, NIPSNAP
