assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003966895.1_ASM396689v1	AP018449	Methylomusa anaerophila DNA, complete genome	1	913-2738	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	Orphan	GTTTCAATCCCTTATAGGTAAGCTACAAAC,GTTTCAATCCCTTATAGGTAAGCTACAAAC,GTTTCAATCCCTTATAGGTAAGCTACAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	27,27,27	27	Orphan	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	NA,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|249aa|down_0|AP018449.1_3296_4043_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|743aa|down_1|AP018449.1_4157_6386_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|568aa|down_2|AP018449.1_6484_8188_-	cd08489, PBP2_NikA, The substrate-binding component of an ABC-type nickel import system contains the type 2 periplasmic binding fold	NA|744aa|down_3|AP018449.1_8199_10431_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|383aa|down_4|AP018449.1_10498_11647_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|403aa|down_5|AP018449.1_11820_13029_-	PRK11646, PRK11646, multidrug efflux MFS transporter MdtH	NA|268aa|down_6|AP018449.1_13043_13847_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|273aa|down_7|AP018449.1_13861_14680_-	pfam04016, DUF364, Putative heavy-metal chelation	NA|417aa|down_8|AP018449.1_14689_15940_-	PRK02186, PRK02186, argininosuccinate lyase; Provisional	NA|286aa|down_9|AP018449.1_16273_17131_-	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters
GCA_003966895.1_ASM396689v1	AP018449	Methylomusa anaerophila DNA, complete genome	2	23969-25403	2,2,2	CRT,PILER-CR,CRISPRCasFinder	no		RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	Orphan	GTTTCAATTCCTTATAGGTAAGCTACAAAC,GTTTCAATTCCTTATAGGTAAGCTACAAAC,GTTTCAATTCCTTATAGGTAAGCTACAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	21,20,20	21	Orphan	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	NA|126aa|up_2|AP018449.1_21794_22172_+,NA|78aa|up_0|AP018449.1_23210_23444_-,NA|56aa|down_4|AP018449.1_28451_28619_-	NA|273aa|up_9|AP018449.1_13861_14680_-	pfam04016, DUF364, Putative heavy-metal chelation	NA|417aa|up_8|AP018449.1_14689_15940_-	PRK02186, PRK02186, argininosuccinate lyase; Provisional	NA|286aa|up_7|AP018449.1_16273_17131_-	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters	NA|281aa|up_6|AP018449.1_17105_17948_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|282aa|up_5|AP018449.1_17966_18812_-	TIGR02790, Nickel_transport_system_permease_protein_nikC	NA|314aa|up_4|AP018449.1_18808_19750_-	PRK10352, PRK10352, nickel transporter permease NikB; Provisional	NA|540aa|up_3|AP018449.1_19774_21394_-	cd08489, PBP2_NikA, The substrate-binding component of an ABC-type nickel import system contains the type 2 periplasmic binding fold	NA|126aa|up_2|AP018449.1_21794_22172_+	NA	NA|126aa|up_1|AP018449.1_22789_23167_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|78aa|up_0|AP018449.1_23210_23444_-	NA	NA|84aa|down_0|AP018449.1_26065_26317_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|204aa|down_1|AP018449.1_26501_27113_+	COG2191, COG2191, Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]	NA|203aa|down_2|AP018449.1_27116_27725_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|231aa|down_3|AP018449.1_27749_28442_-	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional	NA|56aa|down_4|AP018449.1_28451_28619_-	NA	NA|112aa|down_5|AP018449.1_28718_29054_-	PRK10019, PRK10019, nickel/cobalt efflux transporter RcnA	NA|106aa|down_6|AP018449.1_29152_29470_-	cd01139, TroA_f, Periplasmic binding protein TroA_f	NA|255aa|down_7|AP018449.1_29441_30206_-	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|261aa|down_8|AP018449.1_30250_31033_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|369aa|down_9|AP018449.1_31073_32180_-	pfam01032, FecCD, FecCD transport family
GCA_003966895.1_ASM396689v1	AP018449	Methylomusa anaerophila DNA, complete genome	4	3002509-3003004	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	Type III-B,Type III-A,Type III-C,Type III-D	GTTGTGAAAGCCGCTAAGCGGCATTGAAAC,GTTGTGAAAGCCGCTAAGCGGCATTGAAAC,GTTGTGAAAGCCGCTAAGCGGCATTGAAACNNN	30,30,33	0	0	NA	NA	NA:NA:NA	6,6,7	7	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	NA|54aa|up_3|AP018449.1_2999062_2999224_+,NA|127aa|up_0|AP018449.1_3001876_3002257_+,NA	NA|312aa|up_9|AP018449.1_2991952_2992888_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|646aa|up_8|AP018449.1_2993205_2995143_+	cd01915, CODH, Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively	NA|170aa|up_7|AP018449.1_2995156_2995666_+	cd10563, CooF_like, CooF, iron-sulfur subunit of carbon monoxide dehydrogenase	NA|252aa|up_6|AP018449.1_2995752_2996508_-	PRK07569, PRK07569, bidirectional hydrogenase complex protein HoxU; Validated	NA|601aa|up_5|AP018449.1_2996520_2998323_-	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|165aa|up_4|AP018449.1_2998309_2998804_-	pfam01257, 2Fe-2S_thioredx, Thioredoxin-like [2Fe-2S] ferredoxin	NA|54aa|up_3|AP018449.1_2999062_2999224_+	NA	NA|398aa|up_2|AP018449.1_2999567_3000761_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|253aa|up_1|AP018449.1_3000896_3001655_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|127aa|up_0|AP018449.1_3001876_3002257_+	NA	csx1|332aa|down_0|AP018449.1_3003896_3004892_+	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|132aa|down_1|AP018449.1_3004896_3005292_+	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cmr1gr7|312aa|down_2|AP018449.1_3005826_3006762_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas10|565aa|down_3|AP018449.1_3006758_3008453_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|356aa|down_4|AP018449.1_3008454_3009522_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	csm6|384aa|down_5|AP018449.1_3009521_3010673_+	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cmr4gr7|318aa|down_6|AP018449.1_3010690_3011644_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|146aa|down_7|AP018449.1_3011663_3012101_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|384aa|down_8|AP018449.1_3012084_3013236_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cas6|270aa|down_9|AP018449.1_3013413_3014223_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6
GCA_003966895.1_ASM396689v1	AP018449	Methylomusa anaerophila DNA, complete genome	5	3015750-3016510	4,5,4	PILER-CR,CRISPRCasFinder,CRT	no	csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	Type III-B,Type III-A,Type III-C,Type III-D	GTTGTGAAAGCTGCTATGCAGCATTGAAAC,GTTGTGAAAGCTGCTATGCAGCATTGAAAC,GTTGTGAAAGCTGCTATGCAGCATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	11,11,11	11	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	NA|68aa|up_0|AP018449.1_3015048_3015252_+,NA|230aa|down_6|AP018449.1_3024376_3025066_+	cas10|565aa|up_9|AP018449.1_3006758_3008453_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|356aa|up_8|AP018449.1_3008454_3009522_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	csm6|384aa|up_7|AP018449.1_3009521_3010673_+	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cmr4gr7|318aa|up_6|AP018449.1_3010690_3011644_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|146aa|up_5|AP018449.1_3011663_3012101_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|384aa|up_4|AP018449.1_3012084_3013236_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cas6|270aa|up_3|AP018449.1_3013413_3014223_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|103aa|up_2|AP018449.1_3014367_3014676_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|81aa|up_1|AP018449.1_3014809_3015052_+	pfam01381, HTH_3, Helix-turn-helix	NA|68aa|up_0|AP018449.1_3015048_3015252_+	NA	NA|241aa|down_0|AP018449.1_3016896_3017619_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|293aa|down_1|AP018449.1_3017700_3018579_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|239aa|down_2|AP018449.1_3018754_3019471_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|115aa|down_3|AP018449.1_3019546_3019891_+	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb	NA|301aa|down_4|AP018449.1_3020855_3021758_+	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein	NA|791aa|down_5|AP018449.1_3021761_3024134_+	cd01677, PFL2_DhaB_BssA, Pyruvate formate lyase 2 and related enzymes	NA|230aa|down_6|AP018449.1_3024376_3025066_+	NA	NA|599aa|down_7|AP018449.1_3025140_3026937_+	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain	NA|87aa|down_8|AP018449.1_3027065_3027326_+	PRK14860, tatA, twin arginine translocase protein A; Provisional	NA|87aa|down_9|AP018449.1_3027463_3027724_-	pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3
GCA_003966895.1_ASM396689v1	AP018449	Methylomusa anaerophila DNA, complete genome	6	4694505-4694803	5,5,6	CRT,PILER-CR,CRISPRCasFinder	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm3gr7	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	 Type III-C?,Type III-D,Type III-C,Type III-B,Type III-A	NNNNGTTTCAAATCCTTATAGGTAGGCTATAAAC,GTTTCAAATCCTTATAGGTAGGCTATAAACC,GTTTCAAATCCTTATAGGTAGGCTATAAAC	34,31,30	0	0	NA	NA	NA:NA:NA	4,3,3	4	TypeIII-C?,TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	NA|339aa|up_4|AP018449.1_4687285_4688302_-,NA|33aa|up_3|AP018449.1_4688247_4688346_-,NA|182aa|up_1|AP018449.1_4692318_4692864_+,NA|91aa|down_0|AP018449.1_4695048_4695321_-,NA|95aa|down_1|AP018449.1_4695467_4695752_-	NA|252aa|up_9|AP018449.1_4682031_4682787_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|351aa|up_8|AP018449.1_4683035_4684088_-	PRK07094, PRK07094, biotin synthase; Provisional	NA|271aa|up_7|AP018449.1_4684182_4684995_-	COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	NA|355aa|up_6|AP018449.1_4685201_4686266_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|226aa|up_5|AP018449.1_4686611_4687289_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|339aa|up_4|AP018449.1_4687285_4688302_-	NA	NA|33aa|up_3|AP018449.1_4688247_4688346_-	NA	NA|1122aa|up_2|AP018449.1_4688709_4692075_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|182aa|up_1|AP018449.1_4692318_4692864_+	NA	NA|452aa|up_0|AP018449.1_4692931_4694287_-	cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|91aa|down_0|AP018449.1_4695048_4695321_-	NA	NA|95aa|down_1|AP018449.1_4695467_4695752_-	NA	NA|290aa|down_2|AP018449.1_4695779_4696649_-	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	NA|397aa|down_3|AP018449.1_4697629_4698820_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	cmr6gr7|420aa|down_4|AP018449.1_4698830_4700090_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|151aa|down_5|AP018449.1_4700086_4700539_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|321aa|down_6|AP018449.1_4700522_4701485_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|391aa|down_7|AP018449.1_4701497_4702670_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|549aa|down_8|AP018449.1_4702662_4704309_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|315aa|down_9|AP018449.1_4704308_4705253_-	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1
GCA_003966895.1_ASM396689v1	AP018449	Methylomusa anaerophila DNA, complete genome	7	4696838-4696928	7	CRISPRCasFinder	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm3gr7	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	 Type III-C?,Type III-D,Type III-C,Type III-B,Type III-A	ATCCCTTATAGGTAAGCTATAAAC	24	0	0	NA	NA	NA	1	1	TypeIII-C?,TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	NA|339aa|up_7|AP018449.1_4687285_4688302_-,NA|33aa|up_6|AP018449.1_4688247_4688346_-,NA|182aa|up_4|AP018449.1_4692318_4692864_+,NA|91aa|up_2|AP018449.1_4695048_4695321_-,NA|95aa|up_1|AP018449.1_4695467_4695752_-,NA|84aa|down_9|AP018449.1_4710736_4710988_-	NA|355aa|up_9|AP018449.1_4685201_4686266_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|226aa|up_8|AP018449.1_4686611_4687289_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|339aa|up_7|AP018449.1_4687285_4688302_-	NA	NA|33aa|up_6|AP018449.1_4688247_4688346_-	NA	NA|1122aa|up_5|AP018449.1_4688709_4692075_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|182aa|up_4|AP018449.1_4692318_4692864_+	NA	NA|452aa|up_3|AP018449.1_4692931_4694287_-	cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|91aa|up_2|AP018449.1_4695048_4695321_-	NA	NA|95aa|up_1|AP018449.1_4695467_4695752_-	NA	NA|290aa|up_0|AP018449.1_4695779_4696649_-	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	NA|397aa|down_0|AP018449.1_4697629_4698820_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	cmr6gr7|420aa|down_1|AP018449.1_4698830_4700090_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|151aa|down_2|AP018449.1_4700086_4700539_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|321aa|down_3|AP018449.1_4700522_4701485_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|391aa|down_4|AP018449.1_4701497_4702670_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|549aa|down_5|AP018449.1_4702662_4704309_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|315aa|down_6|AP018449.1_4704308_4705253_-	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1	NA|427aa|down_7|AP018449.1_4705610_4706891_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|290aa|down_8|AP018449.1_4707967_4708837_-	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	NA|84aa|down_9|AP018449.1_4710736_4710988_-	NA
GCA_003966895.1_ASM396689v1	AP018449	Methylomusa anaerophila DNA, complete genome	8	4709020-4710576	8,6,6	CRISPRCasFinder,CRT,PILER-CR	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm3gr7	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	 Type III-C?,Type III-D,Type III-C,Type III-B,Type III-A	GTTTCAATCCCTTATAGGTAAGCTATAAAC,GTTTCAATCCCTTATAGGTAAGCTATAAAC,GTTTCAATCCCTTATAGGTAAGCTATAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	23,23,22	23	TypeIII-C?,TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	NA,NA|84aa|down_0|AP018449.1_4710736_4710988_-,NA|38aa|down_3|AP018449.1_4712872_4712986_-	NA|290aa|up_9|AP018449.1_4695779_4696649_-	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	NA|397aa|up_8|AP018449.1_4697629_4698820_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	cmr6gr7|420aa|up_7|AP018449.1_4698830_4700090_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|151aa|up_6|AP018449.1_4700086_4700539_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|321aa|up_5|AP018449.1_4700522_4701485_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|391aa|up_4|AP018449.1_4701497_4702670_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|549aa|up_3|AP018449.1_4702662_4704309_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|315aa|up_2|AP018449.1_4704308_4705253_-	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1	NA|427aa|up_1|AP018449.1_4705610_4706891_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|290aa|up_0|AP018449.1_4707967_4708837_-	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	NA|84aa|down_0|AP018449.1_4710736_4710988_-	NA	csm3gr7|79aa|down_1|AP018449.1_4711070_4711307_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	NA|425aa|down_2|AP018449.1_4711556_4712831_-	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]	NA|38aa|down_3|AP018449.1_4712872_4712986_-	NA	NA|152aa|down_4|AP018449.1_4712982_4713438_-	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|337aa|down_5|AP018449.1_4713468_4714479_-	COG1902, NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]	NA|126aa|down_6|AP018449.1_4714610_4714988_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|194aa|down_7|AP018449.1_4715119_4715701_-	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|396aa|down_8|AP018449.1_4715904_4717092_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|218aa|down_9|AP018449.1_4717659_4718313_-	cd08613, GDPD_GDE4_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial  homologs of mammalian glycerophosphodiester phosphodiesterase GDE4
GCA_003966895.1_ASM396689v1	AP018449	Methylomusa anaerophila DNA, complete genome	9	4751728-4754560	7,7,9	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6,csm5gr7,csm4gr5,csm3gr7	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	 Type III-A?,Type I-B	GTTTCAATCCCTTATAGGTAAGCTACAAAC,GTTTCAATCCCTTATAGGTAAGCTACAAAC,GTTTCAATCCCTTATAGGTAAGCTACAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	42,41,41	42	TypeIII-A?,TypeI-B	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	NA|34aa|up_8|AP018449.1_4738159_4738261_-,NA|378aa|up_2|AP018449.1_4746583_4747717_-,NA	NA|408aa|up_9|AP018449.1_4736811_4738035_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|34aa|up_8|AP018449.1_4738159_4738261_-	NA	NA|664aa|up_7|AP018449.1_4738746_4740738_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|683aa|up_6|AP018449.1_4740768_4742817_-	pfam03170, BcsB, Bacterial cellulose synthase subunit	NA|418aa|up_5|AP018449.1_4742813_4744067_-	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|543aa|up_4|AP018449.1_4744118_4745747_-	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria	NA|288aa|up_3|AP018449.1_4745733_4746597_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|378aa|up_2|AP018449.1_4746583_4747717_-	NA	NA|159aa|up_1|AP018449.1_4750886_4751363_-	pfam06180, CbiK, Cobalt chelatase (CbiK)	NA|97aa|up_0|AP018449.1_4751404_4751695_-	pfam06180, CbiK, Cobalt chelatase (CbiK)	cas2|104aa|down_0|AP018449.1_4754782_4755094_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_1|AP018449.1_4755090_4756083_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|167aa|down_2|AP018449.1_4756110_4756611_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|144aa|down_3|AP018449.1_4756612_4757044_-	pfam01934, DUF86, Protein of unknown function DUF86	NA|143aa|down_4|AP018449.1_4757033_4757462_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	cas3|756aa|down_5|AP018449.1_4759354_4761622_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|239aa|down_6|AP018449.1_4761572_4762289_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|303aa|down_7|AP018449.1_4762294_4763203_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|139aa|down_8|AP018449.1_4763237_4763654_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas8b1|509aa|down_9|AP018449.1_4763650_4765177_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)
GCA_003966895.1_ASM396689v1	AP018449	Methylomusa anaerophila DNA, complete genome	10	4757577-4758869	10,8,8	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	Type I-B,Type III-D,Type III-C,Type III-B,Type III-A	GTTTCAATCCCTTATAGGTAGGCTACAAAC,GTTTCAATCCCTTATAGGTAGGCTACAAAC,GTTTCAATCCCTTATAGGTAGGCTACAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	19,19,18	19	TypeI-B,TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	NA|378aa|up_7|AP018449.1_4746583_4747717_-,NA|64aa|down_8|AP018449.1_4767255_4767447_-,NA|93aa|down_9|AP018449.1_4767506_4767785_-	NA|543aa|up_9|AP018449.1_4744118_4745747_-	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria	NA|288aa|up_8|AP018449.1_4745733_4746597_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|378aa|up_7|AP018449.1_4746583_4747717_-	NA	NA|159aa|up_6|AP018449.1_4750886_4751363_-	pfam06180, CbiK, Cobalt chelatase (CbiK)	NA|97aa|up_5|AP018449.1_4751404_4751695_-	pfam06180, CbiK, Cobalt chelatase (CbiK)	cas2|104aa|up_4|AP018449.1_4754782_4755094_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|up_3|AP018449.1_4755090_4756083_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|167aa|up_2|AP018449.1_4756110_4756611_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|144aa|up_1|AP018449.1_4756612_4757044_-	pfam01934, DUF86, Protein of unknown function DUF86	NA|143aa|up_0|AP018449.1_4757033_4757462_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	cas3|756aa|down_0|AP018449.1_4759354_4761622_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|239aa|down_1|AP018449.1_4761572_4762289_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|303aa|down_2|AP018449.1_4762294_4763203_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|139aa|down_3|AP018449.1_4763237_4763654_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas8b1|509aa|down_4|AP018449.1_4763650_4765177_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|245aa|down_5|AP018449.1_4765190_4765925_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|116aa|down_6|AP018449.1_4766160_4766508_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|85aa|down_7|AP018449.1_4766501_4766756_-	COG0864, NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]	NA|64aa|down_8|AP018449.1_4767255_4767447_-	NA	NA|93aa|down_9|AP018449.1_4767506_4767785_-	NA
GCA_003966895.1_ASM396689v1	AP018449	Methylomusa anaerophila DNA, complete genome	11	4769382-4771016	11,9,9	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	Type I-B,Type III-D,Type III-C,Type III-B,Type III-A	GTTTCAATCCCTTATAGGTAAGCTACAAAC,GTTTCAATCCCTTATAGGTAAGCTACAAAC,GTTTCAATCCCTTATAGGTAAGCTACAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	24,24,23	24	TypeI-B,TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,WYL,csa3,cas14j,cas3HD,cas3,DinG,csx1,cmr1gr7,cas10,cmr3gr5,csm6,cmr4gr7,cmr5gr11,cmr6gr7,cas6,csm3gr7,cas2,cas1,cas4,cas5,cas7,cas8b1,csm5gr7,csm4gr5,csm2gr11	NA|64aa|up_2|AP018449.1_4767255_4767447_-,NA|93aa|up_1|AP018449.1_4767506_4767785_-,NA|515aa|down_6|AP018449.1_4778346_4779891_-	cas5|239aa|up_9|AP018449.1_4761572_4762289_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|303aa|up_8|AP018449.1_4762294_4763203_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|139aa|up_7|AP018449.1_4763237_4763654_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas8b1|509aa|up_6|AP018449.1_4763650_4765177_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|245aa|up_5|AP018449.1_4765190_4765925_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|116aa|up_4|AP018449.1_4766160_4766508_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|85aa|up_3|AP018449.1_4766501_4766756_-	COG0864, NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]	NA|64aa|up_2|AP018449.1_4767255_4767447_-	NA	NA|93aa|up_1|AP018449.1_4767506_4767785_-	NA	NA|136aa|up_0|AP018449.1_4768746_4769154_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	csm5gr7|375aa|down_0|AP018449.1_4771292_4772417_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|347aa|down_1|AP018449.1_4772418_4773459_-	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm3gr7|285aa|down_2|AP018449.1_4773495_4774350_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|157aa|down_3|AP018449.1_4774362_4774833_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|730aa|down_4|AP018449.1_4774897_4777087_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|258aa|down_5|AP018449.1_4777144_4777918_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|515aa|down_6|AP018449.1_4778346_4779891_-	NA	NA|295aa|down_7|AP018449.1_4780166_4781051_-	pfam13676, TIR_2, TIR domain	NA|NA	NA	NA|NA	NA
