assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003971565.1_ASM397156v1	CP026503	Lactobacillus crispatus strain AB70 chromosome, complete genome	1	272530-272630	1	CRISPRCasFinder	no	cas14j,cas2	cas14j,cas2,cas3,c2c9_V-U4,RT,DinG,csn2,cas1,cas9,DEDDh,csa3	Unclear	CAGCAGCGAAATTAGCAACTATGAATTTA	29	0	0	NA	NA	NA	1	1	TypeV	cas14j,cas2,cas3,c2c9_V-U4,RT,DinG,csn2,cas1,cas9,DEDDh,csa3	NA|124aa|up_8|CP026503.1_265174_265546_+,NA|90aa|up_7|CP026503.1_265853_266123_+,NA|142aa|up_5|CP026503.1_267085_267511_+,NA|170aa|up_4|CP026503.1_267461_267971_+,NA|64aa|up_0|CP026503.1_270750_270942_+,NA|60aa|down_0|CP026503.1_275545_275725_+,NA|172aa|down_5|CP026503.1_278849_279365_-,NA|64aa|down_7|CP026503.1_280775_280967_+	NA|888aa|up_9|CP026503.1_262280_264944_+	COG3421, COG3421, Uncharacterized protein conserved in bacteria [Function unknown]	NA|124aa|up_8|CP026503.1_265174_265546_+	NA	NA|90aa|up_7|CP026503.1_265853_266123_+	NA	NA|282aa|up_6|CP026503.1_266124_266970_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|142aa|up_5|CP026503.1_267085_267511_+	NA	NA|170aa|up_4|CP026503.1_267461_267971_+	NA	NA|60aa|up_3|CP026503.1_268049_268229_+	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|420aa|up_2|CP026503.1_268240_269500_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	cas14j|177aa|up_1|CP026503.1_269996_270527_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|64aa|up_0|CP026503.1_270750_270942_+	NA	NA|60aa|down_0|CP026503.1_275545_275725_+	NA	NA|116aa|down_1|CP026503.1_275708_276056_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|77aa|down_2|CP026503.1_276111_276342_+	pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain	NA|416aa|down_3|CP026503.1_276301_277549_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|286aa|down_4|CP026503.1_277628_278486_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|172aa|down_5|CP026503.1_278849_279365_-	NA	NA|393aa|down_6|CP026503.1_279626_280805_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|64aa|down_7|CP026503.1_280775_280967_+	NA	NA|450aa|down_8|CP026503.1_281057_282407_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|370aa|down_9|CP026503.1_282543_283653_+	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel
GCA_003971565.1_ASM397156v1	CP026503	Lactobacillus crispatus strain AB70 chromosome, complete genome	3	1238673-1239159	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas14j,cas2,cas3,c2c9_V-U4,RT,DinG,csn2,cas1,cas9,DEDDh,csa3	Type II-C,Type II-B,Type II-A	GATCTAAACCTCATTGATCTAACAATCATCTAAAAC,NNNNNNNNNNNGATCTAAACCTCATTGATCTAACAATCATCTAAAAC,GATCTAAACCTCATTGATCTAACAATCATCTAAAAC	36,47,36	1	1	1238709-1238738	CP026503.1_1095494-1095523	NA:NA:NA	6,7,6	7	TypeII-C,TypeII-B,TypeII-A	cas14j,cas2,cas3,c2c9_V-U4,RT,DinG,csn2,cas1,cas9,DEDDh,csa3	NA,NA	NA|607aa|up_9|CP026503.1_1228106_1229927_-	PRK05667, dnaG, DNA primase; Validated	NA|688aa|up_8|CP026503.1_1229956_1232020_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|306aa|up_7|CP026503.1_1232012_1232930_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|252aa|up_6|CP026503.1_1233189_1233945_-	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|301aa|up_5|CP026503.1_1234314_1235217_-	PRK00089, era, GTPase Era; Reviewed	NA|175aa|up_4|CP026503.1_1235216_1235741_-	pfam02130, UPF0054, Uncharacterized protein family UPF0054	NA|320aa|up_3|CP026503.1_1235743_1236703_-	pfam02562, PhoH, PhoH-like protein	NA|148aa|up_2|CP026503.1_1236728_1237172_-	pfam09424, YqeY, Yqey-like protein	NA|59aa|up_1|CP026503.1_1237332_1237509_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|279aa|up_0|CP026503.1_1237736_1238573_+	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	csn2|83aa|down_0|CP026503.1_1239191_1239440_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|393aa|down_1|CP026503.1_1239502_1240681_-	pfam00872, Transposase_mut, Transposase, Mutator family	csn2|145aa|down_2|CP026503.1_1240802_1241237_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_3|CP026503.1_1241233_1241539_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|303aa|down_4|CP026503.1_1241516_1242425_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|348aa|down_5|CP026503.1_1242628_1243672_-	pfam16595, Cas9_PI, PAM-interacting domain of CRISPR-associated endonuclease Cas9	cas9|207aa|down_6|CP026503.1_1243625_1244246_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|564aa|down_7|CP026503.1_1244389_1246081_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas9|858aa|down_8|CP026503.1_1246018_1248592_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|393aa|down_9|CP026503.1_1248750_1249929_+	pfam00872, Transposase_mut, Transposase, Mutator family
GCA_003971565.1_ASM397156v1	CP026503	Lactobacillus crispatus strain AB70 chromosome, complete genome	4	1252395-1252662	4	CRISPRCasFinder	no	csn2,cas2,cas1,cas9	cas14j,cas2,cas3,c2c9_V-U4,RT,DinG,csn2,cas1,cas9,DEDDh,csa3	Type II-C,Type II-B,Type II-A	CCTCCACATGTGTGGAGAATACT	23	0	0	NA	NA	NA	4	4	TypeII-C,TypeII-B,TypeII-A	cas14j,cas2,cas3,c2c9_V-U4,RT,DinG,csn2,cas1,cas9,DEDDh,csa3	NA,NA|216aa|down_1|CP026503.1_1253928_1254576_+	csn2|145aa|up_9|CP026503.1_1240802_1241237_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|up_8|CP026503.1_1241233_1241539_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|303aa|up_7|CP026503.1_1241516_1242425_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|348aa|up_6|CP026503.1_1242628_1243672_-	pfam16595, Cas9_PI, PAM-interacting domain of CRISPR-associated endonuclease Cas9	cas9|207aa|up_5|CP026503.1_1243625_1244246_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|564aa|up_4|CP026503.1_1244389_1246081_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas9|858aa|up_3|CP026503.1_1246018_1248592_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|393aa|up_2|CP026503.1_1248750_1249929_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|208aa|up_1|CP026503.1_1250271_1250895_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|189aa|up_0|CP026503.1_1250965_1251532_-	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|293aa|down_0|CP026503.1_1252879_1253758_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|216aa|down_1|CP026503.1_1253928_1254576_+	NA	NA|288aa|down_2|CP026503.1_1254601_1255465_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|412aa|down_3|CP026503.1_1255478_1256714_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|497aa|down_4|CP026503.1_1256825_1258316_+	PRK09225, PRK09225, threonine synthase; Validated	NA|456aa|down_5|CP026503.1_1258335_1259703_+	PRK09034, PRK09034, aspartate kinase; Reviewed	NA|187aa|down_6|CP026503.1_1259793_1260354_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|393aa|down_7|CP026503.1_1260507_1261686_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|772aa|down_8|CP026503.1_1261901_1264217_+	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain	NA|124aa|down_9|CP026503.1_1264274_1264646_-	pfam12680, SnoaL_2, SnoaL-like domain
GCA_003971565.1_ASM397156v1	CP026503	Lactobacillus crispatus strain AB70 chromosome, complete genome	5	2312476-2312540	5	CRISPRCasFinder	no		cas14j,cas2,cas3,c2c9_V-U4,RT,DinG,csn2,cas1,cas9,DEDDh,csa3	Orphan	TTTACTTTATAAAGGAAATAATATG	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas2,cas3,c2c9_V-U4,RT,DinG,csn2,cas1,cas9,DEDDh,csa3	NA|111aa|up_4|CP026503.1_2310149_2310482_+,NA|138aa|down_6|CP026503.1_2321884_2322298_-	NA|393aa|up_9|CP026503.1_2304446_2305625_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|243aa|up_8|CP026503.1_2306532_2307261_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|437aa|up_7|CP026503.1_2307441_2308752_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|286aa|up_6|CP026503.1_2308811_2309669_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|89aa|up_5|CP026503.1_2309893_2310160_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|111aa|up_4|CP026503.1_2310149_2310482_+	NA	NA|148aa|up_3|CP026503.1_2310664_2311108_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|65aa|up_2|CP026503.1_2311070_2311265_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|199aa|up_1|CP026503.1_2311471_2312068_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|126aa|up_0|CP026503.1_2312071_2312449_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|258aa|down_0|CP026503.1_2313828_2314602_-	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|437aa|down_1|CP026503.1_2314755_2316066_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|393aa|down_2|CP026503.1_2316307_2317486_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|243aa|down_3|CP026503.1_2317554_2318283_+	pfam13349, DUF4097, Putative adhesin	NA|523aa|down_4|CP026503.1_2318466_2320035_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|270aa|down_5|CP026503.1_2320136_2320946_-	pfam01381, HTH_3, Helix-turn-helix	NA|138aa|down_6|CP026503.1_2321884_2322298_-	NA	NA|282aa|down_7|CP026503.1_2322445_2323291_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|126aa|down_8|CP026503.1_2323479_2323857_+	pfam13473, Cupredoxin_1, Cupredoxin-like domain	NA|96aa|down_9|CP026503.1_2323869_2324157_+	pfam13473, Cupredoxin_1, Cupredoxin-like domain
